Multiple sequence alignment - TraesCS1B01G021700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G021700 chr1B 100.000 3512 0 0 1 3512 9934134 9937645 0.000000e+00 6486.0
1 TraesCS1B01G021700 chr1B 78.274 672 100 23 1313 1967 9915411 9916053 1.180000e-104 390.0
2 TraesCS1B01G021700 chr1B 77.547 579 88 22 2044 2622 9916157 9916693 9.470000e-81 311.0
3 TraesCS1B01G021700 chr1B 84.068 295 26 9 989 1268 9910048 9910336 7.470000e-67 265.0
4 TraesCS1B01G021700 chr1A 94.059 808 41 4 1 802 9202528 9203334 0.000000e+00 1219.0
5 TraesCS1B01G021700 chr1A 88.289 871 82 13 2645 3512 9223529 9224382 0.000000e+00 1026.0
6 TraesCS1B01G021700 chr1A 95.429 525 17 4 1 518 9175134 9175658 0.000000e+00 830.0
7 TraesCS1B01G021700 chr1A 79.484 931 128 35 989 1892 9203511 9204405 1.390000e-168 603.0
8 TraesCS1B01G021700 chr1A 79.856 834 120 26 992 1783 9221675 9220848 1.830000e-157 566.0
9 TraesCS1B01G021700 chr1A 83.247 579 88 3 2044 2622 9204593 9205162 1.120000e-144 523.0
10 TraesCS1B01G021700 chr1A 77.730 696 131 15 1917 2603 9220612 9219932 4.220000e-109 405.0
11 TraesCS1B01G021700 chr1A 78.425 584 95 21 2045 2622 9222572 9223130 5.580000e-93 351.0
12 TraesCS1B01G021700 chr1A 82.547 424 39 17 454 861 9222273 9221869 1.210000e-89 340.0
13 TraesCS1B01G021700 chr1A 85.512 283 32 5 3228 3508 9206802 9207077 1.600000e-73 287.0
14 TraesCS1B01G021700 chr1A 85.455 165 15 5 831 995 9203332 9203487 2.810000e-36 163.0
15 TraesCS1B01G021700 chr1A 97.183 71 1 1 312 381 9222377 9222307 6.160000e-23 119.0
16 TraesCS1B01G021700 chr1A 78.571 112 22 2 3208 3319 9222409 9222300 4.860000e-09 73.1
17 TraesCS1B01G021700 chr1A 88.889 54 6 0 2090 2143 554071454 554071401 2.260000e-07 67.6
18 TraesCS1B01G021700 chr1D 79.472 1666 246 57 989 2622 7715724 7717325 0.000000e+00 1094.0
19 TraesCS1B01G021700 chr1D 88.268 716 64 11 294 995 7714991 7715700 0.000000e+00 839.0
20 TraesCS1B01G021700 chr1D 88.202 712 46 10 294 995 7342788 7342105 0.000000e+00 815.0
21 TraesCS1B01G021700 chr1D 85.944 747 83 11 2763 3507 7337466 7336740 0.000000e+00 778.0
22 TraesCS1B01G021700 chr1D 80.881 999 150 24 992 1968 7342072 7341093 0.000000e+00 749.0
23 TraesCS1B01G021700 chr1D 91.423 513 31 8 488 995 7768155 7768659 0.000000e+00 691.0
24 TraesCS1B01G021700 chr1D 79.348 1012 145 36 989 1968 7768686 7769665 0.000000e+00 652.0
25 TraesCS1B01G021700 chr1D 83.074 579 89 3 2044 2622 7769768 7770337 5.200000e-143 518.0
26 TraesCS1B01G021700 chr1D 91.705 217 12 4 1 215 7714529 7714741 2.650000e-76 296.0
27 TraesCS1B01G021700 chr1D 83.333 312 52 0 2314 2625 7340954 7340643 4.440000e-74 289.0
28 TraesCS1B01G021700 chr1D 89.862 217 16 4 1 215 7343219 7343007 1.240000e-69 274.0
29 TraesCS1B01G021700 chr1D 88.837 215 18 4 1 213 7767576 7767786 3.480000e-65 259.0
30 TraesCS1B01G021700 chr1D 84.583 240 19 6 3273 3512 7718662 7718883 4.560000e-54 222.0
31 TraesCS1B01G021700 chr1D 85.238 210 24 3 3301 3508 7772186 7772390 3.550000e-50 209.0
32 TraesCS1B01G021700 chr1D 77.657 367 65 8 3071 3436 7714847 7715197 1.280000e-49 207.0
33 TraesCS1B01G021700 chr1D 77.112 367 66 10 3071 3436 7342932 7342583 2.770000e-46 196.0
34 TraesCS1B01G021700 chr1D 79.736 227 36 6 292 512 7765340 7765562 4.690000e-34 156.0
35 TraesCS1B01G021700 chrUn 94.026 385 16 4 147 524 318884221 318883837 8.450000e-161 577.0
36 TraesCS1B01G021700 chrUn 94.026 385 16 4 147 524 349769802 349769418 8.450000e-161 577.0
37 TraesCS1B01G021700 chrUn 98.013 151 3 0 1 151 395190270 395190120 2.690000e-66 263.0
38 TraesCS1B01G021700 chr6B 97.826 46 1 0 206 251 395680984 395681029 2.910000e-11 80.5
39 TraesCS1B01G021700 chr2B 95.918 49 0 2 206 253 49300050 49300097 1.050000e-10 78.7
40 TraesCS1B01G021700 chr2B 95.745 47 2 0 205 251 461514773 461514727 3.760000e-10 76.8
41 TraesCS1B01G021700 chr7D 92.453 53 3 1 199 251 376699315 376699366 1.350000e-09 75.0
42 TraesCS1B01G021700 chr7D 85.294 68 7 3 2057 2122 545256029 545256095 2.260000e-07 67.6
43 TraesCS1B01G021700 chr3A 91.228 57 1 3 195 251 550509509 550509457 1.350000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G021700 chr1B 9934134 9937645 3511 False 6486.000000 6486 100.000000 1 3512 1 chr1B.!!$F2 3511
1 TraesCS1B01G021700 chr1B 9915411 9916693 1282 False 350.500000 390 77.910500 1313 2622 2 chr1B.!!$F3 1309
2 TraesCS1B01G021700 chr1A 9175134 9175658 524 False 830.000000 830 95.429000 1 518 1 chr1A.!!$F1 517
3 TraesCS1B01G021700 chr1A 9222572 9224382 1810 False 688.500000 1026 83.357000 2045 3512 2 chr1A.!!$F3 1467
4 TraesCS1B01G021700 chr1A 9202528 9207077 4549 False 559.000000 1219 85.551400 1 3508 5 chr1A.!!$F2 3507
5 TraesCS1B01G021700 chr1A 9219932 9222409 2477 True 300.620000 566 83.177400 312 3319 5 chr1A.!!$R2 3007
6 TraesCS1B01G021700 chr1D 7714529 7718883 4354 False 531.600000 1094 84.337000 1 3512 5 chr1D.!!$F1 3511
7 TraesCS1B01G021700 chr1D 7336740 7343219 6479 True 516.833333 815 84.222333 1 3507 6 chr1D.!!$R1 3506
8 TraesCS1B01G021700 chr1D 7765340 7772390 7050 False 414.166667 691 84.609333 1 3508 6 chr1D.!!$F2 3507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 3207 0.396435 TGAAGACCGACAGTGGCAAT 59.604 50.0 0.0 0.0 0.0 3.56 F
1627 4285 0.102663 GGACAGCTACTTCTACGCCC 59.897 60.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 4842 0.030908 GGACGAGATCGCCGAATTCT 59.969 55.0 15.55 0.0 44.43 2.40 R
3440 10227 0.179076 CATGTGACGGCCAGCTATCA 60.179 55.0 2.24 0.0 0.00 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 2300 9.844257 ATTCTAGCTAGACTAATCAAATGCTTT 57.156 29.630 23.17 0.00 30.81 3.51
271 2718 6.623767 GCAAAATACTGTCCCAGCTTTAGAAG 60.624 42.308 0.00 0.00 34.37 2.85
452 2950 4.898265 TGGTCTTAGCAGATCTAGAGCATT 59.102 41.667 17.23 0.00 32.89 3.56
526 3024 6.215636 AGTGGTTTCTTCCTAGTACATCCAAT 59.784 38.462 0.00 0.00 0.00 3.16
531 3029 9.841880 GTTTCTTCCTAGTACATCCAATTTTTC 57.158 33.333 0.00 0.00 0.00 2.29
556 3055 8.412456 TCTCTCTTGAAAATGCAACACAATTTA 58.588 29.630 0.00 0.00 31.41 1.40
637 3141 3.488778 AATGAGGATGGTCTCTGATGC 57.511 47.619 0.00 0.00 34.98 3.91
647 3151 2.495270 GGTCTCTGATGCTCTCTTGACA 59.505 50.000 0.00 0.00 0.00 3.58
690 3199 2.869801 GTTGAACATGTGAAGACCGACA 59.130 45.455 0.00 0.00 0.00 4.35
698 3207 0.396435 TGAAGACCGACAGTGGCAAT 59.604 50.000 0.00 0.00 0.00 3.56
794 3308 3.738281 CGCATCGATATATTCTGGACCCC 60.738 52.174 0.00 0.00 0.00 4.95
919 3473 5.141910 GGTCTATAAGAGGAGCTACAAGGT 58.858 45.833 0.00 0.00 0.00 3.50
941 3501 3.088532 TGTGTGCTTCTTTGTTCCAGTT 58.911 40.909 0.00 0.00 0.00 3.16
946 3506 5.526111 TGTGCTTCTTTGTTCCAGTTAGTAC 59.474 40.000 0.00 0.00 0.00 2.73
967 3527 1.279846 TGCATTCATCTCTGCCACTCA 59.720 47.619 0.00 0.00 37.59 3.41
977 3537 1.416030 TCTGCCACTCAGCTGTGTTTA 59.584 47.619 18.42 7.37 42.56 2.01
979 3539 2.816087 CTGCCACTCAGCTGTGTTTATT 59.184 45.455 18.42 0.00 35.78 1.40
1056 3660 0.255890 CGGGTTGGTCCATGGAAGAT 59.744 55.000 18.20 0.00 38.11 2.40
1066 3670 0.382158 CATGGAAGATGCAGCTGCTG 59.618 55.000 36.61 24.80 42.66 4.41
1114 3718 0.734889 CCAAACATCCTTGCCTAGCG 59.265 55.000 0.00 0.00 0.00 4.26
1115 3719 0.734889 CAAACATCCTTGCCTAGCGG 59.265 55.000 0.00 0.00 0.00 5.52
1127 3740 0.522180 CCTAGCGGTAGTGATAGCGG 59.478 60.000 19.56 0.00 40.79 5.52
1128 3741 1.520494 CTAGCGGTAGTGATAGCGGA 58.480 55.000 13.51 0.00 40.79 5.54
1129 3742 1.878088 CTAGCGGTAGTGATAGCGGAA 59.122 52.381 13.51 0.00 40.79 4.30
1176 3804 2.906897 CCAGCCACACCCACACAC 60.907 66.667 0.00 0.00 0.00 3.82
1182 3810 0.320374 CCACACCCACACACGATACT 59.680 55.000 0.00 0.00 0.00 2.12
1187 3815 2.991190 CACCCACACACGATACTTGTAC 59.009 50.000 0.00 0.00 0.00 2.90
1188 3816 2.629137 ACCCACACACGATACTTGTACA 59.371 45.455 0.00 0.00 0.00 2.90
1193 3821 5.399013 CACACACGATACTTGTACAGATCA 58.601 41.667 12.36 0.00 0.00 2.92
1204 3835 1.134670 GTACAGATCAGGACCAGGTGC 60.135 57.143 1.97 1.97 0.00 5.01
1278 3912 1.077429 GATGCACAGGTTCCCTCCC 60.077 63.158 0.00 0.00 0.00 4.30
1298 3932 2.184322 CCTGGTGGATGTCGACGG 59.816 66.667 11.62 0.00 34.57 4.79
1432 4081 2.730524 GGCCTCTCACTCCAGGAGC 61.731 68.421 17.31 0.78 32.04 4.70
1439 4088 1.476085 CTCACTCCAGGAGCTGTACAG 59.524 57.143 18.93 18.93 32.04 2.74
1448 4097 3.862124 GCTGTACAGCGTGGTCTG 58.138 61.111 30.66 0.03 45.29 3.51
1493 4142 3.460857 CCTCTACTACCACAATGAGGC 57.539 52.381 0.00 0.00 35.35 4.70
1498 4147 3.673956 TACCACAATGAGGCGGCGG 62.674 63.158 9.78 0.00 0.00 6.13
1501 4150 3.395702 ACAATGAGGCGGCGGGTA 61.396 61.111 9.78 0.00 0.00 3.69
1502 4151 2.124901 CAATGAGGCGGCGGGTAA 60.125 61.111 9.78 0.00 0.00 2.85
1503 4152 1.747367 CAATGAGGCGGCGGGTAAA 60.747 57.895 9.78 0.00 0.00 2.01
1504 4153 1.101049 CAATGAGGCGGCGGGTAAAT 61.101 55.000 9.78 0.00 0.00 1.40
1505 4154 0.470766 AATGAGGCGGCGGGTAAATA 59.529 50.000 9.78 0.00 0.00 1.40
1506 4155 0.690762 ATGAGGCGGCGGGTAAATAT 59.309 50.000 9.78 0.00 0.00 1.28
1507 4156 1.340088 TGAGGCGGCGGGTAAATATA 58.660 50.000 9.78 0.00 0.00 0.86
1508 4157 1.903860 TGAGGCGGCGGGTAAATATAT 59.096 47.619 9.78 0.00 0.00 0.86
1509 4158 2.277084 GAGGCGGCGGGTAAATATATG 58.723 52.381 9.78 0.00 0.00 1.78
1510 4159 1.065709 AGGCGGCGGGTAAATATATGG 60.066 52.381 9.78 0.00 0.00 2.74
1513 4162 1.339247 CGGCGGGTAAATATATGGGCA 60.339 52.381 0.00 0.00 0.00 5.36
1525 4177 3.963383 ATATGGGCAACGACGATTTTC 57.037 42.857 0.00 0.00 37.60 2.29
1627 4285 0.102663 GGACAGCTACTTCTACGCCC 59.897 60.000 0.00 0.00 0.00 6.13
1647 4305 2.202610 TTCGAGCGCATCTCCACG 60.203 61.111 11.47 3.63 38.62 4.94
1759 4417 1.207089 CCTGGGAGCAGTTCGTCATTA 59.793 52.381 0.00 0.00 0.00 1.90
1760 4418 2.354704 CCTGGGAGCAGTTCGTCATTAA 60.355 50.000 0.00 0.00 0.00 1.40
1804 4462 2.352814 CGAGAGGTTTCCAACATCGACT 60.353 50.000 0.00 0.00 46.10 4.18
1805 4463 3.254892 GAGAGGTTTCCAACATCGACTC 58.745 50.000 0.00 0.00 46.10 3.36
1830 4491 2.876550 CGACATCGTGGTAGATCCTACA 59.123 50.000 6.48 0.00 37.07 2.74
1839 4500 7.005902 TCGTGGTAGATCCTACATATAAACCA 58.994 38.462 6.48 0.00 37.07 3.67
1880 4541 1.470979 CCGGTTCTACATCGTGGGAAG 60.471 57.143 0.00 0.00 0.00 3.46
1882 4600 1.278238 GTTCTACATCGTGGGAAGCG 58.722 55.000 0.00 0.00 0.00 4.68
1884 4602 0.738975 TCTACATCGTGGGAAGCGAG 59.261 55.000 0.00 0.00 41.83 5.03
1892 4610 2.182030 GGGAAGCGAGGACGACAG 59.818 66.667 0.00 0.00 42.66 3.51
1893 4611 2.341101 GGGAAGCGAGGACGACAGA 61.341 63.158 0.00 0.00 42.66 3.41
1894 4612 1.153997 GGAAGCGAGGACGACAGAC 60.154 63.158 0.00 0.00 42.66 3.51
1895 4613 1.153997 GAAGCGAGGACGACAGACC 60.154 63.158 0.00 0.00 42.66 3.85
1900 4618 0.956410 CGAGGACGACAGACCAGACT 60.956 60.000 0.00 0.00 42.66 3.24
1901 4619 1.249407 GAGGACGACAGACCAGACTT 58.751 55.000 0.00 0.00 34.60 3.01
1902 4620 1.200484 GAGGACGACAGACCAGACTTC 59.800 57.143 0.00 0.00 34.60 3.01
1903 4621 0.959553 GGACGACAGACCAGACTTCA 59.040 55.000 0.00 0.00 32.40 3.02
1905 4623 2.608261 GGACGACAGACCAGACTTCAAG 60.608 54.545 0.00 0.00 32.40 3.02
1906 4624 2.293677 GACGACAGACCAGACTTCAAGA 59.706 50.000 0.00 0.00 0.00 3.02
1907 4625 2.894126 ACGACAGACCAGACTTCAAGAT 59.106 45.455 0.00 0.00 0.00 2.40
1909 4627 3.674682 CGACAGACCAGACTTCAAGATCC 60.675 52.174 0.00 0.00 0.00 3.36
1910 4628 3.242867 ACAGACCAGACTTCAAGATCCA 58.757 45.455 0.00 0.00 0.00 3.41
1913 4631 4.081254 CAGACCAGACTTCAAGATCCATGA 60.081 45.833 0.00 0.00 0.00 3.07
1942 4714 4.041938 TGCCCATGTCATTATCTATCAGCA 59.958 41.667 0.00 0.00 0.00 4.41
1944 4716 5.066117 GCCCATGTCATTATCTATCAGCATG 59.934 44.000 0.00 0.00 34.14 4.06
1956 4728 4.421515 AGCATGGCCGAGCTTGCT 62.422 61.111 15.34 12.49 40.77 3.91
1968 4740 2.555199 GAGCTTGCTGACATCGGTATT 58.445 47.619 0.00 0.00 0.00 1.89
1969 4741 2.283298 AGCTTGCTGACATCGGTATTG 58.717 47.619 0.00 0.00 0.00 1.90
1970 4742 2.093500 AGCTTGCTGACATCGGTATTGA 60.093 45.455 0.00 0.00 0.00 2.57
1975 4747 2.481969 GCTGACATCGGTATTGAGCTGA 60.482 50.000 0.00 0.00 0.00 4.26
1976 4748 3.785486 CTGACATCGGTATTGAGCTGAA 58.215 45.455 0.00 0.00 0.00 3.02
1977 4749 4.375272 CTGACATCGGTATTGAGCTGAAT 58.625 43.478 3.30 3.30 0.00 2.57
1985 4760 2.449137 ATTGAGCTGAATCCCAAGGG 57.551 50.000 0.00 0.00 0.00 3.95
2014 4789 2.187946 GGCTAGTGGACATGCGCT 59.812 61.111 9.73 0.00 0.00 5.92
2017 4792 0.740868 GCTAGTGGACATGCGCTTCA 60.741 55.000 9.73 0.00 0.00 3.02
2018 4793 1.284657 CTAGTGGACATGCGCTTCAG 58.715 55.000 9.73 0.00 0.00 3.02
2019 4794 0.740868 TAGTGGACATGCGCTTCAGC 60.741 55.000 9.73 0.00 37.78 4.26
2028 4803 2.892334 GCGCTTCAGCACGAAACCA 61.892 57.895 0.00 0.00 42.21 3.67
2038 4840 0.950836 CACGAAACCATGGTGCTTCA 59.049 50.000 20.60 0.00 30.72 3.02
2040 4842 2.746904 CACGAAACCATGGTGCTTCATA 59.253 45.455 20.60 0.00 30.72 2.15
2041 4843 3.009723 ACGAAACCATGGTGCTTCATAG 58.990 45.455 20.60 9.31 0.00 2.23
2056 4858 3.203161 TCATAGAATTCGGCGATCTCG 57.797 47.619 15.63 9.29 43.27 4.04
2059 4861 0.030908 AGAATTCGGCGATCTCGTCC 59.969 55.000 11.76 1.35 41.58 4.79
2082 4884 2.288025 GCCCCTGTACCTGACCGAA 61.288 63.158 0.00 0.00 0.00 4.30
2137 4939 1.066430 TCGAGTTATGCAAGACCCCAC 60.066 52.381 0.00 0.00 0.00 4.61
2157 4965 5.186198 CCACATTTCGGAGAAGTTAATCCT 58.814 41.667 5.34 0.00 45.90 3.24
2158 4966 5.065218 CCACATTTCGGAGAAGTTAATCCTG 59.935 44.000 5.34 0.47 45.90 3.86
2159 4967 5.874810 CACATTTCGGAGAAGTTAATCCTGA 59.125 40.000 5.34 2.54 45.90 3.86
2160 4968 6.540189 CACATTTCGGAGAAGTTAATCCTGAT 59.460 38.462 5.34 0.00 45.90 2.90
2161 4969 6.763610 ACATTTCGGAGAAGTTAATCCTGATC 59.236 38.462 5.34 0.00 45.90 2.92
2162 4970 6.546428 TTTCGGAGAAGTTAATCCTGATCT 57.454 37.500 0.00 0.00 45.90 2.75
2163 4971 6.546428 TTCGGAGAAGTTAATCCTGATCTT 57.454 37.500 0.00 0.00 45.90 2.40
2164 4972 5.907207 TCGGAGAAGTTAATCCTGATCTTG 58.093 41.667 0.00 0.00 33.12 3.02
2165 4973 5.422331 TCGGAGAAGTTAATCCTGATCTTGT 59.578 40.000 0.00 0.00 33.12 3.16
2166 4974 6.070767 TCGGAGAAGTTAATCCTGATCTTGTT 60.071 38.462 0.00 0.00 33.12 2.83
2167 4975 6.256757 CGGAGAAGTTAATCCTGATCTTGTTC 59.743 42.308 0.00 0.00 33.12 3.18
2168 4976 6.256757 GGAGAAGTTAATCCTGATCTTGTTCG 59.743 42.308 0.00 0.00 32.51 3.95
2169 4977 6.702329 AGAAGTTAATCCTGATCTTGTTCGT 58.298 36.000 0.00 0.00 0.00 3.85
2173 4981 7.782049 AGTTAATCCTGATCTTGTTCGTGATA 58.218 34.615 0.00 0.00 0.00 2.15
2187 4995 4.642445 TCGTGATAAAGATTCCGCTGTA 57.358 40.909 0.00 0.00 0.00 2.74
2197 5005 1.480789 TTCCGCTGTATGCTCCTACA 58.519 50.000 0.00 0.00 40.11 2.74
2235 5043 3.790437 CTGGACCGGGAGCAGCAT 61.790 66.667 6.32 0.00 0.00 3.79
2288 5096 1.594310 GAGGAGGACTCACCAGCAC 59.406 63.158 1.32 0.00 45.85 4.40
2303 5111 2.411701 CACGGAGGCGCTCGAATA 59.588 61.111 20.64 0.00 0.00 1.75
2362 5170 8.644318 AACATTCTACCTCGACATAATAACAC 57.356 34.615 0.00 0.00 0.00 3.32
2372 5180 7.203255 TCGACATAATAACACAGATCGAGAT 57.797 36.000 0.00 0.00 32.82 2.75
2380 5188 5.651387 AACACAGATCGAGATCTTCAAGA 57.349 39.130 12.50 0.00 45.31 3.02
2382 5190 6.030548 ACACAGATCGAGATCTTCAAGAAA 57.969 37.500 12.50 0.00 45.31 2.52
2384 5192 7.102346 ACACAGATCGAGATCTTCAAGAAAAT 58.898 34.615 12.50 0.00 45.31 1.82
2392 5200 6.183360 CGAGATCTTCAAGAAAATGAGGTCAC 60.183 42.308 0.00 0.00 0.00 3.67
2395 5203 5.849510 TCTTCAAGAAAATGAGGTCACGTA 58.150 37.500 0.00 0.00 0.00 3.57
2449 5257 2.508439 CTACAATCGCGGCCGTGT 60.508 61.111 35.52 27.87 35.54 4.49
2462 5270 1.453155 GCCGTGTTCTCCATCATTGT 58.547 50.000 0.00 0.00 0.00 2.71
2469 5277 3.503363 TGTTCTCCATCATTGTTGCAGTC 59.497 43.478 0.00 0.00 0.00 3.51
2535 5347 2.494471 TGTACCGGACCTGATTGTACTG 59.506 50.000 9.46 0.00 34.37 2.74
2539 5351 1.739067 GGACCTGATTGTACTGGCAC 58.261 55.000 0.00 0.00 33.18 5.01
2541 5353 2.290323 GGACCTGATTGTACTGGCACTT 60.290 50.000 0.00 0.00 33.18 3.16
2554 5366 0.668401 GGCACTTGCTTGCATGTTCC 60.668 55.000 12.55 12.55 44.94 3.62
2577 5391 7.970102 TCCACTTGTACACCTTTTACTATTCT 58.030 34.615 0.00 0.00 0.00 2.40
2638 8532 6.886459 AGTGAAATTTGTACCTAGATGCATGT 59.114 34.615 2.46 1.37 0.00 3.21
2641 8535 8.839343 TGAAATTTGTACCTAGATGCATGTATG 58.161 33.333 2.46 3.99 0.00 2.39
2644 8538 5.728637 TGTACCTAGATGCATGTATGAGG 57.271 43.478 2.46 15.80 0.00 3.86
2645 8539 5.393866 TGTACCTAGATGCATGTATGAGGA 58.606 41.667 21.42 8.11 0.00 3.71
2646 8540 6.019108 TGTACCTAGATGCATGTATGAGGAT 58.981 40.000 21.42 11.90 0.00 3.24
2647 8541 5.417754 ACCTAGATGCATGTATGAGGATG 57.582 43.478 21.42 0.00 0.00 3.51
2668 8634 9.032624 AGGATGTGTACTATTTACGCCTATTAT 57.967 33.333 0.00 0.00 0.00 1.28
2922 8899 7.168219 TGGATTATAACTAGCAATGATCCACC 58.832 38.462 19.54 4.30 41.05 4.61
2923 8900 7.017551 TGGATTATAACTAGCAATGATCCACCT 59.982 37.037 19.54 0.00 41.05 4.00
2925 8902 2.898729 ACTAGCAATGATCCACCTCG 57.101 50.000 0.00 0.00 0.00 4.63
2947 8924 9.914131 CCTCGATACATAGTTCAATAGATTTGA 57.086 33.333 0.00 0.00 0.00 2.69
2961 8938 9.611284 TCAATAGATTTGAAACAAATGAAGACG 57.389 29.630 13.25 0.00 0.00 4.18
2979 8956 2.167693 GACGGTCCCTGTAATCATGTCA 59.832 50.000 0.00 0.00 0.00 3.58
2980 8957 2.168521 ACGGTCCCTGTAATCATGTCAG 59.831 50.000 0.00 0.00 0.00 3.51
2981 8958 2.168521 CGGTCCCTGTAATCATGTCAGT 59.831 50.000 0.00 0.00 0.00 3.41
2996 8982 6.066690 TCATGTCAGTAGTAGTATACCACCC 58.933 44.000 0.00 0.00 44.47 4.61
3085 9075 9.520515 ACATATGTTACTGGTTCTCAAAAGAAT 57.479 29.630 1.41 0.00 43.26 2.40
3182 9624 4.236935 CAATTGTTTTAACTCATGCCGCT 58.763 39.130 0.00 0.00 0.00 5.52
3253 9695 8.994170 TGTCGATTGTTTGAAACATGATTACTA 58.006 29.630 11.97 0.00 41.79 1.82
3277 9719 1.056103 CGAGTGACAGAAGAACAGCG 58.944 55.000 0.00 0.00 0.00 5.18
3322 10107 8.565416 CATACAATATATCATATGGCAGCCAAG 58.435 37.037 20.84 11.93 36.95 3.61
3363 10150 1.276989 TCGATACCCTCCAACAACCAC 59.723 52.381 0.00 0.00 0.00 4.16
3387 10174 4.020751 GCTATATGGAACCTCAGCTGATCA 60.021 45.833 18.63 11.01 0.00 2.92
3412 10199 2.224257 GCCTCAAATTTGGCTGGTTTCA 60.224 45.455 17.90 0.00 45.26 2.69
3432 10219 2.680841 CAAGAAAAGTCACACCAACCGA 59.319 45.455 0.00 0.00 0.00 4.69
3436 10223 0.108041 AAGTCACACCAACCGAACGT 60.108 50.000 0.00 0.00 0.00 3.99
3440 10227 0.941542 CACACCAACCGAACGTGATT 59.058 50.000 0.00 0.00 0.00 2.57
3508 10295 3.837213 AGCATCAAATGAAGTTGGTCG 57.163 42.857 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 2300 6.531021 CTTGTTTACCAAGTCCTAAAGAGGA 58.469 40.000 0.00 0.00 44.58 3.71
526 3024 7.095910 TGTGTTGCATTTTCAAGAGAGAAAAA 58.904 30.769 6.03 0.00 46.81 1.94
531 3029 7.473027 AAATTGTGTTGCATTTTCAAGAGAG 57.527 32.000 0.00 0.00 0.00 3.20
556 3055 4.141642 TGCATGTGACAACCAGCTATATCT 60.142 41.667 0.00 0.00 0.00 1.98
637 3141 6.149142 AGCTTAAGCATCTTTTGTCAAGAGAG 59.851 38.462 28.39 5.46 45.16 3.20
647 3151 7.880195 TCAACTCTAGAAGCTTAAGCATCTTTT 59.120 33.333 32.96 20.34 45.53 2.27
690 3199 1.556911 CCTCTGTCCTACATTGCCACT 59.443 52.381 0.00 0.00 0.00 4.00
698 3207 3.767673 GGTCAATGTACCTCTGTCCTACA 59.232 47.826 0.00 0.00 36.53 2.74
879 3399 2.913578 CAACCAGCCAGCCAGCAA 60.914 61.111 0.00 0.00 34.23 3.91
881 3401 4.982701 ACCAACCAGCCAGCCAGC 62.983 66.667 0.00 0.00 0.00 4.85
919 3473 3.088532 ACTGGAACAAAGAAGCACACAA 58.911 40.909 0.00 0.00 38.70 3.33
941 3501 3.706086 TGGCAGAGATGAATGCAGTACTA 59.294 43.478 0.00 0.00 44.37 1.82
946 3506 1.941294 GAGTGGCAGAGATGAATGCAG 59.059 52.381 0.00 0.00 44.37 4.41
948 3508 2.034104 TGAGTGGCAGAGATGAATGC 57.966 50.000 0.00 0.00 41.80 3.56
967 3527 7.336176 GCTACCTACCTAAAAATAAACACAGCT 59.664 37.037 0.00 0.00 0.00 4.24
977 3537 3.433173 CGCCCAGCTACCTACCTAAAAAT 60.433 47.826 0.00 0.00 0.00 1.82
979 3539 1.483415 CGCCCAGCTACCTACCTAAAA 59.517 52.381 0.00 0.00 0.00 1.52
1066 3670 2.885266 TCCTATGATCACTACTCCACGC 59.115 50.000 0.00 0.00 0.00 5.34
1067 3671 5.713792 AATCCTATGATCACTACTCCACG 57.286 43.478 0.00 0.00 0.00 4.94
1068 3672 6.435904 AGCTAATCCTATGATCACTACTCCAC 59.564 42.308 0.00 0.00 0.00 4.02
1114 3718 2.408050 CTGCATTCCGCTATCACTACC 58.592 52.381 0.00 0.00 43.06 3.18
1115 3719 1.795286 GCTGCATTCCGCTATCACTAC 59.205 52.381 0.00 0.00 43.06 2.73
1176 3804 4.338400 TGGTCCTGATCTGTACAAGTATCG 59.662 45.833 0.00 0.00 0.00 2.92
1182 3810 2.567169 CACCTGGTCCTGATCTGTACAA 59.433 50.000 0.00 0.00 0.00 2.41
1187 3815 0.177604 GAGCACCTGGTCCTGATCTG 59.822 60.000 0.00 0.00 36.62 2.90
1188 3816 0.252421 TGAGCACCTGGTCCTGATCT 60.252 55.000 0.00 0.00 41.53 2.75
1193 3821 0.768221 TTCCTTGAGCACCTGGTCCT 60.768 55.000 0.00 0.00 41.53 3.85
1204 3835 1.728971 CGCTTGCACTACTTCCTTGAG 59.271 52.381 0.00 0.00 0.00 3.02
1278 3912 1.448540 GTCGACATCCACCAGGCTG 60.449 63.158 11.55 7.75 37.07 4.85
1394 4043 2.740714 GAGTCCGTGACGCATTGGC 61.741 63.158 0.00 0.00 37.67 4.52
1402 4051 4.131088 GAGGCCCGAGTCCGTGAC 62.131 72.222 0.00 0.00 0.00 3.67
1418 4067 1.075536 TGTACAGCTCCTGGAGTGAGA 59.924 52.381 23.92 11.69 35.51 3.27
1432 4081 0.734253 GAGCAGACCACGCTGTACAG 60.734 60.000 18.93 18.93 40.63 2.74
1439 4088 4.664677 ACACGGAGCAGACCACGC 62.665 66.667 0.00 0.00 0.00 5.34
1442 4091 1.530655 TCTGACACGGAGCAGACCA 60.531 57.895 0.00 0.00 36.31 4.02
1493 4142 1.339247 TGCCCATATATTTACCCGCCG 60.339 52.381 0.00 0.00 0.00 6.46
1498 4147 4.309099 TCGTCGTTGCCCATATATTTACC 58.691 43.478 0.00 0.00 0.00 2.85
1501 4150 6.262273 AGAAAATCGTCGTTGCCCATATATTT 59.738 34.615 0.00 0.00 0.00 1.40
1502 4151 5.763204 AGAAAATCGTCGTTGCCCATATATT 59.237 36.000 0.00 0.00 0.00 1.28
1503 4152 5.179368 CAGAAAATCGTCGTTGCCCATATAT 59.821 40.000 0.00 0.00 0.00 0.86
1504 4153 4.509970 CAGAAAATCGTCGTTGCCCATATA 59.490 41.667 0.00 0.00 0.00 0.86
1505 4154 3.312421 CAGAAAATCGTCGTTGCCCATAT 59.688 43.478 0.00 0.00 0.00 1.78
1506 4155 2.675844 CAGAAAATCGTCGTTGCCCATA 59.324 45.455 0.00 0.00 0.00 2.74
1507 4156 1.468520 CAGAAAATCGTCGTTGCCCAT 59.531 47.619 0.00 0.00 0.00 4.00
1508 4157 0.871722 CAGAAAATCGTCGTTGCCCA 59.128 50.000 0.00 0.00 0.00 5.36
1509 4158 0.454452 GCAGAAAATCGTCGTTGCCC 60.454 55.000 0.00 0.00 0.00 5.36
1510 4159 0.454452 GGCAGAAAATCGTCGTTGCC 60.454 55.000 0.00 0.00 43.54 4.52
1513 4162 2.811431 TCATTGGCAGAAAATCGTCGTT 59.189 40.909 0.00 0.00 0.00 3.85
1525 4177 4.081862 ACCATCAAAGAACATCATTGGCAG 60.082 41.667 0.00 0.00 0.00 4.85
1609 4267 0.815734 TGGGCGTAGAAGTAGCTGTC 59.184 55.000 0.00 0.00 0.00 3.51
1617 4275 0.802607 GCTCGAAGTGGGCGTAGAAG 60.803 60.000 0.00 0.00 0.00 2.85
1627 4285 1.153765 TGGAGATGCGCTCGAAGTG 60.154 57.895 9.73 0.00 44.91 3.16
1647 4305 3.314635 GGTTCTCAAGCATCATGATGTCC 59.685 47.826 31.09 18.58 40.80 4.02
1747 4405 5.276114 CGCTTCTCATCTTAATGACGAACTG 60.276 44.000 0.00 0.00 36.98 3.16
1759 4417 2.408271 TTCATGCCGCTTCTCATCTT 57.592 45.000 0.00 0.00 0.00 2.40
1760 4418 2.408271 TTTCATGCCGCTTCTCATCT 57.592 45.000 0.00 0.00 0.00 2.90
1787 4445 1.337823 CGGAGTCGATGTTGGAAACCT 60.338 52.381 0.00 0.00 42.31 3.50
1818 4479 7.015877 TGTGGTGGTTTATATGTAGGATCTACC 59.984 40.741 3.05 0.00 39.35 3.18
1830 4491 4.040461 CCGAGGAGATGTGGTGGTTTATAT 59.960 45.833 0.00 0.00 0.00 0.86
1839 4500 2.039624 AGGCCGAGGAGATGTGGT 59.960 61.111 0.00 0.00 0.00 4.16
1880 4541 2.179517 CTGGTCTGTCGTCCTCGC 59.820 66.667 0.00 0.00 36.96 5.03
1882 4600 1.200484 GAAGTCTGGTCTGTCGTCCTC 59.800 57.143 0.00 0.00 0.00 3.71
1884 4602 0.959553 TGAAGTCTGGTCTGTCGTCC 59.040 55.000 0.00 0.00 0.00 4.79
1892 4610 4.478206 TCATGGATCTTGAAGTCTGGTC 57.522 45.455 0.00 0.00 0.00 4.02
1893 4611 4.533707 TCTTCATGGATCTTGAAGTCTGGT 59.466 41.667 25.05 0.00 46.54 4.00
1894 4612 4.874966 GTCTTCATGGATCTTGAAGTCTGG 59.125 45.833 25.05 11.06 46.54 3.86
1895 4613 5.485620 TGTCTTCATGGATCTTGAAGTCTG 58.514 41.667 25.05 11.31 46.54 3.51
1919 4691 4.041938 TGCTGATAGATAATGACATGGGCA 59.958 41.667 0.00 0.00 0.00 5.36
1942 4714 2.437359 GTCAGCAAGCTCGGCCAT 60.437 61.111 2.24 0.00 0.00 4.40
1944 4716 2.437359 ATGTCAGCAAGCTCGGCC 60.437 61.111 6.70 0.00 0.00 6.13
1956 4728 3.885724 TTCAGCTCAATACCGATGTCA 57.114 42.857 0.00 0.00 0.00 3.58
1968 4740 1.371467 TTCCCTTGGGATTCAGCTCA 58.629 50.000 9.48 0.00 0.00 4.26
1969 4741 2.305009 CATTCCCTTGGGATTCAGCTC 58.695 52.381 9.48 0.00 0.00 4.09
1970 4742 1.687368 GCATTCCCTTGGGATTCAGCT 60.687 52.381 9.48 0.00 0.00 4.24
1975 4747 1.197812 GCTTGCATTCCCTTGGGATT 58.802 50.000 9.48 3.18 0.00 3.01
1976 4748 0.041535 TGCTTGCATTCCCTTGGGAT 59.958 50.000 9.48 0.00 0.00 3.85
1977 4749 0.612732 CTGCTTGCATTCCCTTGGGA 60.613 55.000 3.91 3.91 0.00 4.37
1985 4760 0.737219 CACTAGCCCTGCTTGCATTC 59.263 55.000 0.00 0.00 40.44 2.67
1990 4765 0.254178 ATGTCCACTAGCCCTGCTTG 59.746 55.000 0.00 0.00 40.44 4.01
2014 4789 0.950836 CACCATGGTTTCGTGCTGAA 59.049 50.000 16.84 0.00 33.85 3.02
2019 4794 0.950836 TGAAGCACCATGGTTTCGTG 59.049 50.000 16.84 4.57 38.31 4.35
2021 4796 3.270027 TCTATGAAGCACCATGGTTTCG 58.730 45.455 16.84 5.35 38.31 3.46
2028 4803 2.880890 GCCGAATTCTATGAAGCACCAT 59.119 45.455 3.52 0.00 0.00 3.55
2038 4840 2.095161 GGACGAGATCGCCGAATTCTAT 60.095 50.000 15.55 0.00 44.43 1.98
2040 4842 0.030908 GGACGAGATCGCCGAATTCT 59.969 55.000 15.55 0.00 44.43 2.40
2041 4843 0.030908 AGGACGAGATCGCCGAATTC 59.969 55.000 15.55 0.00 44.43 2.17
2056 4858 4.468689 GTACAGGGGCGGCAGGAC 62.469 72.222 12.47 2.79 0.00 3.85
2059 4861 4.473520 CAGGTACAGGGGCGGCAG 62.474 72.222 12.47 2.10 0.00 4.85
2082 4884 2.034687 AGCCAGGTCGCATTTGCT 59.965 55.556 0.51 0.00 39.32 3.91
2137 4939 6.989169 AGATCAGGATTAACTTCTCCGAAATG 59.011 38.462 0.00 0.00 36.62 2.32
2157 4965 6.255670 CGGAATCTTTATCACGAACAAGATCA 59.744 38.462 0.00 0.00 35.37 2.92
2158 4966 6.641062 CGGAATCTTTATCACGAACAAGATC 58.359 40.000 0.00 0.00 35.37 2.75
2159 4967 5.006746 GCGGAATCTTTATCACGAACAAGAT 59.993 40.000 0.00 0.00 37.54 2.40
2160 4968 4.328983 GCGGAATCTTTATCACGAACAAGA 59.671 41.667 0.00 0.00 0.00 3.02
2161 4969 4.330074 AGCGGAATCTTTATCACGAACAAG 59.670 41.667 0.00 0.00 0.00 3.16
2162 4970 4.092821 CAGCGGAATCTTTATCACGAACAA 59.907 41.667 0.00 0.00 0.00 2.83
2163 4971 3.616821 CAGCGGAATCTTTATCACGAACA 59.383 43.478 0.00 0.00 0.00 3.18
2164 4972 3.617263 ACAGCGGAATCTTTATCACGAAC 59.383 43.478 0.00 0.00 0.00 3.95
2165 4973 3.857052 ACAGCGGAATCTTTATCACGAA 58.143 40.909 0.00 0.00 0.00 3.85
2166 4974 3.520290 ACAGCGGAATCTTTATCACGA 57.480 42.857 0.00 0.00 0.00 4.35
2167 4975 4.376413 GCATACAGCGGAATCTTTATCACG 60.376 45.833 0.00 0.00 0.00 4.35
2168 4976 5.023551 GCATACAGCGGAATCTTTATCAC 57.976 43.478 0.00 0.00 0.00 3.06
2187 4995 2.485966 AGAGGTGGATGTAGGAGCAT 57.514 50.000 0.00 0.00 0.00 3.79
2197 5005 1.153086 GCATGGCGAAGAGGTGGAT 60.153 57.895 0.00 0.00 0.00 3.41
2257 5065 0.678395 CCTCCTCCATCGATGACCAG 59.322 60.000 26.86 17.30 0.00 4.00
2258 5066 0.261696 TCCTCCTCCATCGATGACCA 59.738 55.000 26.86 9.03 0.00 4.02
2268 5076 1.610673 GCTGGTGAGTCCTCCTCCA 60.611 63.158 7.67 7.67 39.65 3.86
2288 5096 0.935366 GAAGTATTCGAGCGCCTCCG 60.935 60.000 2.29 5.86 34.17 4.63
2303 5111 3.228188 TCTTGCCAATGGAAGTGAAGT 57.772 42.857 2.05 0.00 30.28 3.01
2362 5170 7.042590 CCTCATTTTCTTGAAGATCTCGATCTG 60.043 40.741 9.99 0.00 46.75 2.90
2372 5180 4.703897 ACGTGACCTCATTTTCTTGAAGA 58.296 39.130 0.00 0.00 0.00 2.87
2380 5188 2.301870 TGAGCCTACGTGACCTCATTTT 59.698 45.455 0.00 0.00 30.00 1.82
2382 5190 1.478510 CTGAGCCTACGTGACCTCATT 59.521 52.381 12.26 0.00 34.20 2.57
2384 5192 0.965866 CCTGAGCCTACGTGACCTCA 60.966 60.000 0.00 6.02 33.65 3.86
2392 5200 1.726265 GGTACGACCTGAGCCTACG 59.274 63.158 0.00 0.00 34.73 3.51
2425 5233 0.101759 GCCGCGATTGTAGTCCTGTA 59.898 55.000 8.23 0.00 0.00 2.74
2449 5257 2.743664 CGACTGCAACAATGATGGAGAA 59.256 45.455 17.83 0.00 38.38 2.87
2462 5270 1.006086 CAATATGCCGACGACTGCAA 58.994 50.000 8.09 0.00 39.43 4.08
2469 5277 1.837450 CGACGACAATATGCCGACG 59.163 57.895 0.00 0.00 35.39 5.12
2535 5347 0.668401 GGAACATGCAAGCAAGTGCC 60.668 55.000 11.31 11.31 44.26 5.01
2539 5351 2.223876 ACAAGTGGAACATGCAAGCAAG 60.224 45.455 0.00 0.00 44.52 4.01
2541 5353 1.401761 ACAAGTGGAACATGCAAGCA 58.598 45.000 0.00 0.00 44.52 3.91
2554 5366 8.827177 TGAGAATAGTAAAAGGTGTACAAGTG 57.173 34.615 0.00 0.00 0.00 3.16
2612 5426 8.046708 ACATGCATCTAGGTACAAATTTCACTA 58.953 33.333 0.00 0.00 0.00 2.74
2622 5436 5.393866 TCCTCATACATGCATCTAGGTACA 58.606 41.667 0.00 0.00 0.00 2.90
2638 8532 6.492429 AGGCGTAAATAGTACACATCCTCATA 59.508 38.462 0.00 0.00 0.00 2.15
2641 8535 5.197682 AGGCGTAAATAGTACACATCCTC 57.802 43.478 0.00 0.00 0.00 3.71
2668 8634 9.747898 AATAGGGAATTTACAATGTGAACAGTA 57.252 29.630 0.00 0.00 0.00 2.74
2669 8635 8.650143 AATAGGGAATTTACAATGTGAACAGT 57.350 30.769 0.00 0.00 0.00 3.55
2710 8677 3.879998 TGAAGCTTGTTGTGGTACAGAA 58.120 40.909 2.10 0.00 41.80 3.02
2752 8719 6.996879 ACAGATCTTCATTTATCCAGGTCATG 59.003 38.462 0.00 0.00 0.00 3.07
2784 8751 8.568794 AGTTGTAGCTTTTGTTATCTTTTCTCC 58.431 33.333 0.00 0.00 0.00 3.71
2813 8780 9.113838 GATATGTCAATGTACTTCCATCAGTTT 57.886 33.333 0.00 0.00 0.00 2.66
2911 8888 6.030548 ACTATGTATCGAGGTGGATCATTG 57.969 41.667 0.00 0.00 0.00 2.82
2912 8889 6.267699 TGAACTATGTATCGAGGTGGATCATT 59.732 38.462 0.00 0.00 0.00 2.57
2947 8924 2.884639 CAGGGACCGTCTTCATTTGTTT 59.115 45.455 0.00 0.00 0.00 2.83
2961 8938 3.914426 ACTGACATGATTACAGGGACC 57.086 47.619 0.00 0.00 36.17 4.46
2979 8956 7.455638 TGAAAACTTGGGTGGTATACTACTACT 59.544 37.037 17.66 0.00 39.73 2.57
2980 8957 7.614494 TGAAAACTTGGGTGGTATACTACTAC 58.386 38.462 17.66 12.00 39.17 2.73
2981 8958 7.795534 TGAAAACTTGGGTGGTATACTACTA 57.204 36.000 17.66 6.14 0.00 1.82
3038 9024 9.845740 ATATGTAGAATTGCATACCACTAACAA 57.154 29.630 0.00 0.00 35.19 2.83
3068 9058 8.477419 TCCAAATTATTCTTTTGAGAACCAGT 57.523 30.769 0.00 0.00 36.40 4.00
3125 9567 6.384305 ACCTAGCTAGTCCTTCAAATACACAT 59.616 38.462 19.31 0.00 0.00 3.21
3126 9568 5.720041 ACCTAGCTAGTCCTTCAAATACACA 59.280 40.000 19.31 0.00 0.00 3.72
3127 9569 6.223351 ACCTAGCTAGTCCTTCAAATACAC 57.777 41.667 19.31 0.00 0.00 2.90
3128 9570 6.550108 CCTACCTAGCTAGTCCTTCAAATACA 59.450 42.308 19.31 0.00 0.00 2.29
3234 9676 6.400621 CGTCGCTAGTAATCATGTTTCAAACA 60.401 38.462 5.18 5.18 46.94 2.83
3253 9695 0.952280 TTCTTCTGTCACTCGTCGCT 59.048 50.000 0.00 0.00 0.00 4.93
3277 9719 5.584649 TGTATGGTTATACTTGCAAGAGTGC 59.415 40.000 32.50 16.55 43.78 4.40
3363 10150 2.297315 TCAGCTGAGGTTCCATATAGCG 59.703 50.000 13.74 0.00 36.36 4.26
3412 10199 2.993937 TCGGTTGGTGTGACTTTTCTT 58.006 42.857 0.00 0.00 0.00 2.52
3432 10219 1.668419 GGCCAGCTATCAATCACGTT 58.332 50.000 0.00 0.00 0.00 3.99
3436 10223 0.829990 TGACGGCCAGCTATCAATCA 59.170 50.000 2.24 0.00 0.00 2.57
3440 10227 0.179076 CATGTGACGGCCAGCTATCA 60.179 55.000 2.24 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.