Multiple sequence alignment - TraesCS1B01G021500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G021500 chr1B 100.000 4295 0 0 1 4295 9872736 9877030 0.000000e+00 7932.0
1 TraesCS1B01G021500 chr1B 83.684 2231 341 17 1432 3653 9550007 9547791 0.000000e+00 2082.0
2 TraesCS1B01G021500 chr1B 82.287 2230 359 24 1436 3648 9692538 9690328 0.000000e+00 1897.0
3 TraesCS1B01G021500 chr1B 82.366 2172 343 25 1428 3585 10015308 10017453 0.000000e+00 1853.0
4 TraesCS1B01G021500 chr1B 82.970 2020 318 21 1455 3462 10060686 10062691 0.000000e+00 1801.0
5 TraesCS1B01G021500 chr1B 80.763 1258 219 17 2379 3632 9607682 9606444 0.000000e+00 961.0
6 TraesCS1B01G021500 chr1B 87.135 342 42 2 1101 1441 10014726 10015066 1.870000e-103 387.0
7 TraesCS1B01G021500 chr1B 85.965 342 47 1 1101 1441 10060077 10060418 8.780000e-97 364.0
8 TraesCS1B01G021500 chr1B 85.380 342 48 2 1101 1441 9693127 9692787 1.900000e-93 353.0
9 TraesCS1B01G021500 chr1D 84.491 2231 326 16 1432 3653 7422096 7419877 0.000000e+00 2185.0
10 TraesCS1B01G021500 chr1D 84.305 2230 331 11 1432 3648 7058360 7056137 0.000000e+00 2161.0
11 TraesCS1B01G021500 chr1D 84.165 2204 325 20 1443 3638 7067452 7065265 0.000000e+00 2115.0
12 TraesCS1B01G021500 chr1D 83.401 2211 359 7 1432 3636 7384049 7381841 0.000000e+00 2043.0
13 TraesCS1B01G021500 chr1D 87.770 556 60 3 3532 4087 7512890 7513437 1.010000e-180 643.0
14 TraesCS1B01G021500 chr1D 89.087 504 55 0 46 549 204083153 204082650 1.010000e-175 627.0
15 TraesCS1B01G021500 chr1D 92.625 339 22 3 1105 1441 7384637 7384300 6.460000e-133 484.0
16 TraesCS1B01G021500 chr1D 87.761 335 40 1 1108 1441 7868615 7868949 1.450000e-104 390.0
17 TraesCS1B01G021500 chr1D 85.714 336 47 1 1107 1441 7058949 7058614 1.900000e-93 353.0
18 TraesCS1B01G021500 chr1D 100.000 28 0 0 4101 4128 7513480 7513507 8.000000e-03 52.8
19 TraesCS1B01G021500 chr1A 84.121 2223 329 17 1443 3648 8632554 8630339 0.000000e+00 2128.0
20 TraesCS1B01G021500 chr1A 82.781 1661 257 19 1432 3076 9341499 9343146 0.000000e+00 1456.0
21 TraesCS1B01G021500 chr1A 83.692 883 115 20 567 1441 9340393 9341254 0.000000e+00 806.0
22 TraesCS1B01G021500 chr1A 86.310 336 45 1 1107 1441 8633163 8632828 8.780000e-97 364.0
23 TraesCS1B01G021500 chr1A 85.673 342 48 1 1101 1441 9543556 9543897 4.080000e-95 359.0
24 TraesCS1B01G021500 chr1A 90.751 173 16 0 3412 3584 9348732 9348904 9.290000e-57 231.0
25 TraesCS1B01G021500 chr1A 95.312 64 2 1 561 623 9101872 9101809 2.730000e-17 100.0
26 TraesCS1B01G021500 chr4B 83.220 2211 347 16 1440 3633 4991361 4993564 0.000000e+00 2006.0
27 TraesCS1B01G021500 chr6B 86.322 541 69 4 11 551 111520438 111520973 6.190000e-163 584.0
28 TraesCS1B01G021500 chr6B 86.137 541 71 3 11 551 111350384 111350920 8.010000e-162 580.0
29 TraesCS1B01G021500 chr6B 86.137 541 70 4 11 551 111503609 111504144 2.880000e-161 579.0
30 TraesCS1B01G021500 chr6B 85.978 542 68 7 11 551 111337721 111338255 1.340000e-159 573.0
31 TraesCS1B01G021500 chr6B 85.952 541 71 4 11 551 111416761 111417296 1.340000e-159 573.0
32 TraesCS1B01G021500 chr6B 85.952 541 71 4 11 551 111476916 111477451 1.340000e-159 573.0
33 TraesCS1B01G021500 chr6B 85.952 541 71 4 11 551 111549616 111550151 1.340000e-159 573.0
34 TraesCS1B01G021500 chrUn 85.952 541 71 4 11 551 384679131 384678596 1.340000e-159 573.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G021500 chr1B 9872736 9877030 4294 False 7932.0 7932 100.0000 1 4295 1 chr1B.!!$F1 4294
1 TraesCS1B01G021500 chr1B 9547791 9550007 2216 True 2082.0 2082 83.6840 1432 3653 1 chr1B.!!$R1 2221
2 TraesCS1B01G021500 chr1B 9690328 9693127 2799 True 1125.0 1897 83.8335 1101 3648 2 chr1B.!!$R3 2547
3 TraesCS1B01G021500 chr1B 10014726 10017453 2727 False 1120.0 1853 84.7505 1101 3585 2 chr1B.!!$F2 2484
4 TraesCS1B01G021500 chr1B 10060077 10062691 2614 False 1082.5 1801 84.4675 1101 3462 2 chr1B.!!$F3 2361
5 TraesCS1B01G021500 chr1B 9606444 9607682 1238 True 961.0 961 80.7630 2379 3632 1 chr1B.!!$R2 1253
6 TraesCS1B01G021500 chr1D 7419877 7422096 2219 True 2185.0 2185 84.4910 1432 3653 1 chr1D.!!$R2 2221
7 TraesCS1B01G021500 chr1D 7065265 7067452 2187 True 2115.0 2115 84.1650 1443 3638 1 chr1D.!!$R1 2195
8 TraesCS1B01G021500 chr1D 7381841 7384637 2796 True 1263.5 2043 88.0130 1105 3636 2 chr1D.!!$R5 2531
9 TraesCS1B01G021500 chr1D 7056137 7058949 2812 True 1257.0 2161 85.0095 1107 3648 2 chr1D.!!$R4 2541
10 TraesCS1B01G021500 chr1D 204082650 204083153 503 True 627.0 627 89.0870 46 549 1 chr1D.!!$R3 503
11 TraesCS1B01G021500 chr1D 7512890 7513507 617 False 347.9 643 93.8850 3532 4128 2 chr1D.!!$F2 596
12 TraesCS1B01G021500 chr1A 8630339 8633163 2824 True 1246.0 2128 85.2155 1107 3648 2 chr1A.!!$R2 2541
13 TraesCS1B01G021500 chr1A 9340393 9343146 2753 False 1131.0 1456 83.2365 567 3076 2 chr1A.!!$F3 2509
14 TraesCS1B01G021500 chr4B 4991361 4993564 2203 False 2006.0 2006 83.2200 1440 3633 1 chr4B.!!$F1 2193
15 TraesCS1B01G021500 chr6B 111520438 111520973 535 False 584.0 584 86.3220 11 551 1 chr6B.!!$F6 540
16 TraesCS1B01G021500 chr6B 111350384 111350920 536 False 580.0 580 86.1370 11 551 1 chr6B.!!$F2 540
17 TraesCS1B01G021500 chr6B 111503609 111504144 535 False 579.0 579 86.1370 11 551 1 chr6B.!!$F5 540
18 TraesCS1B01G021500 chr6B 111337721 111338255 534 False 573.0 573 85.9780 11 551 1 chr6B.!!$F1 540
19 TraesCS1B01G021500 chr6B 111416761 111417296 535 False 573.0 573 85.9520 11 551 1 chr6B.!!$F3 540
20 TraesCS1B01G021500 chr6B 111476916 111477451 535 False 573.0 573 85.9520 11 551 1 chr6B.!!$F4 540
21 TraesCS1B01G021500 chr6B 111549616 111550151 535 False 573.0 573 85.9520 11 551 1 chr6B.!!$F7 540
22 TraesCS1B01G021500 chrUn 384678596 384679131 535 True 573.0 573 85.9520 11 551 1 chrUn.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.109272 GCTCTGGACGACGATGTTGA 60.109 55.0 0.0 0.0 0.0 3.18 F
1438 1977 0.036388 GGTTCACCGGCAAGATCAGA 60.036 55.0 0.0 0.0 0.0 3.27 F
2056 2601 0.526211 GGGGTTTGGATTCGCAGTTC 59.474 55.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1618 2157 0.177604 CTCTCATCTCACTGGTGGCC 59.822 60.0 0.0 0.0 0.00 5.36 R
2269 2820 0.037326 TTCGATTCACAAGCTCGGCT 60.037 50.0 0.0 0.0 42.56 5.52 R
4035 4621 0.178981 AGGATTGTGTGCTGGCAAGT 60.179 50.0 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.514824 GGCCTGCACCGGATTCTC 60.515 66.667 9.46 0.00 0.00 2.87
20 21 2.268920 GCCTGCACCGGATTCTCA 59.731 61.111 9.46 0.00 0.00 3.27
23 24 2.125552 TGCACCGGATTCTCAGCG 60.126 61.111 9.46 0.00 0.00 5.18
91 92 4.194720 GCCGCTCTGGACGACGAT 62.195 66.667 0.00 0.00 42.00 3.73
96 97 0.109272 GCTCTGGACGACGATGTTGA 60.109 55.000 0.00 0.00 0.00 3.18
103 104 2.444624 CGACGATGTTGACCTGGCG 61.445 63.158 0.00 0.00 0.00 5.69
201 202 1.080093 GCGTCCATGACTTCCACGA 60.080 57.895 0.00 0.00 32.08 4.35
205 206 2.271800 GTCCATGACTTCCACGATGAC 58.728 52.381 0.00 0.00 0.00 3.06
227 228 4.436998 GACGGCTGGGAGGTGTCG 62.437 72.222 0.00 0.00 0.00 4.35
233 234 3.723235 CTGGGAGGTGTCGATGGCG 62.723 68.421 0.00 0.00 39.35 5.69
235 236 3.771160 GGAGGTGTCGATGGCGGT 61.771 66.667 0.00 0.00 38.28 5.68
279 280 2.348888 GGAGCGGACGGAGGAAGAA 61.349 63.158 0.00 0.00 0.00 2.52
280 281 1.139947 GAGCGGACGGAGGAAGAAG 59.860 63.158 0.00 0.00 0.00 2.85
293 294 1.706287 GAAGAAGAATGGCGGCGGAC 61.706 60.000 9.78 0.00 0.00 4.79
305 306 1.985116 GGCGGACAGAAGGGAGAGT 60.985 63.158 0.00 0.00 0.00 3.24
318 319 3.240134 GAGAGTGGGAACTGCCGCA 62.240 63.158 3.52 0.00 37.63 5.69
335 337 1.026718 GCACAGAAATGTCCCTCCCG 61.027 60.000 0.00 0.00 0.00 5.14
353 355 1.812214 CGCCAAATCTCGCTAGCGAC 61.812 60.000 34.66 21.54 46.03 5.19
356 358 1.202302 CCAAATCTCGCTAGCGACAGA 60.202 52.381 34.66 29.51 44.01 3.41
379 381 4.824515 CCCTCGAGTCGGCCTCCT 62.825 72.222 13.54 0.00 36.82 3.69
406 408 3.495453 CGTGTTTCTAAAGGTTGAGGGGA 60.495 47.826 0.00 0.00 0.00 4.81
417 419 1.202348 GTTGAGGGGAAGAATTTGCCG 59.798 52.381 0.00 0.00 45.12 5.69
467 469 2.421424 GTCCGGTACTGTATCTGTTCGT 59.579 50.000 0.00 0.00 0.00 3.85
496 498 1.634702 TTCACGCAAAACTGCAAACC 58.365 45.000 0.00 0.00 34.41 3.27
551 553 3.639094 GGGTCTGCTAGAGATGCTCTTAA 59.361 47.826 1.88 0.00 41.50 1.85
552 554 4.261994 GGGTCTGCTAGAGATGCTCTTAAG 60.262 50.000 1.88 0.00 41.50 1.85
553 555 4.340950 GGTCTGCTAGAGATGCTCTTAAGT 59.659 45.833 1.63 0.00 41.50 2.24
554 556 5.163457 GGTCTGCTAGAGATGCTCTTAAGTT 60.163 44.000 1.63 0.00 41.50 2.66
555 557 6.039941 GGTCTGCTAGAGATGCTCTTAAGTTA 59.960 42.308 1.63 0.00 41.50 2.24
556 558 7.416890 GGTCTGCTAGAGATGCTCTTAAGTTAA 60.417 40.741 1.63 0.00 41.50 2.01
557 559 7.434013 GTCTGCTAGAGATGCTCTTAAGTTAAC 59.566 40.741 1.63 0.00 41.50 2.01
558 560 6.574350 TGCTAGAGATGCTCTTAAGTTAACC 58.426 40.000 0.88 0.00 41.50 2.85
559 561 6.154534 TGCTAGAGATGCTCTTAAGTTAACCA 59.845 38.462 0.88 0.00 41.50 3.67
560 562 7.042335 GCTAGAGATGCTCTTAAGTTAACCAA 58.958 38.462 0.88 0.00 41.50 3.67
561 563 7.713073 GCTAGAGATGCTCTTAAGTTAACCAAT 59.287 37.037 0.88 0.00 41.50 3.16
563 565 8.950208 AGAGATGCTCTTAAGTTAACCAATAC 57.050 34.615 0.88 0.00 37.60 1.89
564 566 8.763601 AGAGATGCTCTTAAGTTAACCAATACT 58.236 33.333 0.88 0.00 37.60 2.12
600 602 9.898152 TTTGGAGTTCAAACCAAGATAATTTTT 57.102 25.926 0.00 0.00 45.08 1.94
603 605 9.419297 GGAGTTCAAACCAAGATAATTTTTACC 57.581 33.333 0.00 0.00 0.00 2.85
619 621 1.133809 TACCTGTGCCCCTCTTGCTT 61.134 55.000 0.00 0.00 0.00 3.91
620 622 1.975407 CCTGTGCCCCTCTTGCTTG 60.975 63.158 0.00 0.00 0.00 4.01
631 633 3.306989 CCCTCTTGCTTGTATGACTGTCA 60.307 47.826 13.60 13.60 0.00 3.58
633 635 5.395657 CCCTCTTGCTTGTATGACTGTCATA 60.396 44.000 23.01 23.01 38.26 2.15
635 637 6.202379 CCTCTTGCTTGTATGACTGTCATATG 59.798 42.308 27.72 21.41 40.97 1.78
636 638 6.643388 TCTTGCTTGTATGACTGTCATATGT 58.357 36.000 27.72 9.87 40.97 2.29
638 640 4.571984 TGCTTGTATGACTGTCATATGTGC 59.428 41.667 27.72 26.88 40.97 4.57
639 641 4.571984 GCTTGTATGACTGTCATATGTGCA 59.428 41.667 27.72 19.56 40.97 4.57
641 643 6.667007 TTGTATGACTGTCATATGTGCAAG 57.333 37.500 27.72 0.00 40.97 4.01
646 648 4.194640 GACTGTCATATGTGCAAGGTGAT 58.805 43.478 2.24 0.00 0.00 3.06
652 654 4.641541 TCATATGTGCAAGGTGATTCTTGG 59.358 41.667 1.90 0.00 43.06 3.61
684 688 7.714813 CCAAAATACATTCCAAAAGTTTGAGGT 59.285 33.333 5.34 0.00 40.55 3.85
698 702 4.286032 AGTTTGAGGTGGACAGCAACTATA 59.714 41.667 4.20 0.00 0.00 1.31
701 705 5.235850 TGAGGTGGACAGCAACTATAAAA 57.764 39.130 4.20 0.00 0.00 1.52
715 719 8.113462 AGCAACTATAAAATTTGGAAGTAGGGA 58.887 33.333 0.00 0.00 0.00 4.20
716 720 8.188799 GCAACTATAAAATTTGGAAGTAGGGAC 58.811 37.037 0.00 0.00 0.00 4.46
719 723 9.816787 ACTATAAAATTTGGAAGTAGGGACAAA 57.183 29.630 0.00 0.00 37.25 2.83
738 742 0.822121 AAAAAGGGTCCGGTGTGAGC 60.822 55.000 0.00 0.00 0.00 4.26
747 751 0.250038 CCGGTGTGAGCCATCCTATG 60.250 60.000 0.00 0.00 0.00 2.23
749 753 1.138859 CGGTGTGAGCCATCCTATGAA 59.861 52.381 0.00 0.00 0.00 2.57
754 758 4.514441 GTGTGAGCCATCCTATGAATTGAG 59.486 45.833 0.00 0.00 0.00 3.02
760 764 6.002704 AGCCATCCTATGAATTGAGAACATC 58.997 40.000 0.00 0.00 0.00 3.06
784 788 4.567159 GGAGTTCTCGTCCAACAATATGTC 59.433 45.833 0.00 0.00 33.84 3.06
792 796 4.380339 CGTCCAACAATATGTCCATTTGCA 60.380 41.667 0.00 0.00 0.00 4.08
793 797 5.663456 GTCCAACAATATGTCCATTTGCAT 58.337 37.500 0.00 0.00 0.00 3.96
794 798 5.521010 GTCCAACAATATGTCCATTTGCATG 59.479 40.000 0.00 0.00 0.00 4.06
795 799 4.271533 CCAACAATATGTCCATTTGCATGC 59.728 41.667 11.82 11.82 0.00 4.06
797 801 4.940463 ACAATATGTCCATTTGCATGCTC 58.060 39.130 20.33 1.59 0.00 4.26
799 803 0.742505 ATGTCCATTTGCATGCTCCG 59.257 50.000 20.33 4.66 0.00 4.63
827 834 0.394216 TGAAGCATTATGCCGGCTGT 60.394 50.000 29.70 18.80 46.52 4.40
833 840 1.660104 CATTATGCCGGCTGTTTTTGC 59.340 47.619 29.70 0.00 0.00 3.68
841 848 1.570813 GGCTGTTTTTGCACACTTCC 58.429 50.000 0.00 0.00 0.00 3.46
880 888 8.630278 TTTTCTCATAGAACGCAGACTTATAC 57.370 34.615 0.00 0.00 33.26 1.47
882 890 6.960468 TCTCATAGAACGCAGACTTATACAG 58.040 40.000 0.00 0.00 0.00 2.74
883 891 6.542735 TCTCATAGAACGCAGACTTATACAGT 59.457 38.462 0.00 0.00 39.07 3.55
885 893 7.862648 TCATAGAACGCAGACTTATACAGTAG 58.137 38.462 0.00 0.00 35.01 2.57
886 894 7.498239 TCATAGAACGCAGACTTATACAGTAGT 59.502 37.037 0.00 0.00 35.01 2.73
887 895 8.771766 CATAGAACGCAGACTTATACAGTAGTA 58.228 37.037 0.00 0.00 35.01 1.82
888 896 7.621428 AGAACGCAGACTTATACAGTAGTAA 57.379 36.000 0.00 0.00 35.01 2.24
889 897 8.048534 AGAACGCAGACTTATACAGTAGTAAA 57.951 34.615 0.00 0.00 35.01 2.01
890 898 8.517878 AGAACGCAGACTTATACAGTAGTAAAA 58.482 33.333 0.00 0.00 35.01 1.52
891 899 9.298774 GAACGCAGACTTATACAGTAGTAAAAT 57.701 33.333 0.00 0.00 35.01 1.82
914 922 8.807667 AATTTTAGCTGAGAACATTGAAGTTG 57.192 30.769 0.00 0.00 0.00 3.16
916 924 6.545504 TTAGCTGAGAACATTGAAGTTGTC 57.454 37.500 0.00 0.00 40.89 3.18
918 926 3.248602 GCTGAGAACATTGAAGTTGTCGT 59.751 43.478 0.00 0.00 42.73 4.34
934 942 5.710099 AGTTGTCGTCCAATAATTTGTCCAT 59.290 36.000 0.00 0.00 35.02 3.41
939 947 4.566360 CGTCCAATAATTTGTCCATTTGCC 59.434 41.667 0.00 0.00 0.00 4.52
941 949 6.172630 GTCCAATAATTTGTCCATTTGCCTT 58.827 36.000 0.00 0.00 0.00 4.35
949 957 6.917217 TTTGTCCATTTGCCTTTAAAGTTG 57.083 33.333 14.03 1.07 0.00 3.16
953 961 5.236263 GTCCATTTGCCTTTAAAGTTGTTGG 59.764 40.000 14.03 12.82 0.00 3.77
955 963 2.500509 TGCCTTTAAAGTTGTTGGCG 57.499 45.000 14.03 0.00 42.87 5.69
968 976 4.094146 AGTTGTTGGCGGAATTTTGTTTTG 59.906 37.500 0.00 0.00 0.00 2.44
976 984 6.712547 TGGCGGAATTTTGTTTTGGAATAAAT 59.287 30.769 0.00 0.00 0.00 1.40
1021 1029 4.083164 CCAACCTTACCAAACCATTCGTAC 60.083 45.833 0.00 0.00 0.00 3.67
1029 1037 2.649331 AACCATTCGTACGTCCTCTG 57.351 50.000 16.05 6.72 0.00 3.35
1035 1043 2.799371 GTACGTCCTCTGCCTCCG 59.201 66.667 0.00 0.00 0.00 4.63
1041 1049 0.386113 GTCCTCTGCCTCCGATACAC 59.614 60.000 0.00 0.00 0.00 2.90
1042 1050 0.259065 TCCTCTGCCTCCGATACACT 59.741 55.000 0.00 0.00 0.00 3.55
1046 1054 1.032794 CTGCCTCCGATACACTAGCA 58.967 55.000 0.00 0.00 0.00 3.49
1048 1056 1.136305 TGCCTCCGATACACTAGCAAC 59.864 52.381 0.00 0.00 0.00 4.17
1050 1058 2.799917 GCCTCCGATACACTAGCAACAG 60.800 54.545 0.00 0.00 0.00 3.16
1052 1060 3.489398 CCTCCGATACACTAGCAACAGTC 60.489 52.174 0.00 0.00 0.00 3.51
1053 1061 2.426024 TCCGATACACTAGCAACAGTCC 59.574 50.000 0.00 0.00 0.00 3.85
1054 1062 2.427453 CCGATACACTAGCAACAGTCCT 59.573 50.000 0.00 0.00 0.00 3.85
1055 1063 3.439293 CGATACACTAGCAACAGTCCTG 58.561 50.000 0.00 0.00 0.00 3.86
1056 1064 2.743636 TACACTAGCAACAGTCCTGC 57.256 50.000 0.00 0.00 40.24 4.85
1057 1065 0.758734 ACACTAGCAACAGTCCTGCA 59.241 50.000 0.09 0.00 42.48 4.41
1058 1066 1.151668 CACTAGCAACAGTCCTGCAC 58.848 55.000 0.09 0.00 42.48 4.57
1082 1090 1.137086 TGCTCCTCCGATAGCAAGAAC 59.863 52.381 3.66 0.00 45.36 3.01
1088 1096 1.757118 TCCGATAGCAAGAACCCTCTG 59.243 52.381 0.00 0.00 30.03 3.35
1089 1097 1.757118 CCGATAGCAAGAACCCTCTGA 59.243 52.381 0.00 0.00 30.03 3.27
1201 1209 3.356639 CTTCGGCTGGTCGCTGCTA 62.357 63.158 0.00 0.00 44.92 3.49
1202 1210 3.642778 TTCGGCTGGTCGCTGCTAC 62.643 63.158 0.00 0.00 44.92 3.58
1317 1325 2.914379 GGTTCAAGGACACCGACAG 58.086 57.895 0.00 0.00 0.00 3.51
1326 1334 3.299977 CACCGACAGGACCACCGA 61.300 66.667 0.00 0.00 41.02 4.69
1336 1344 1.420138 AGGACCACCGACATCTTTGTT 59.580 47.619 0.00 0.00 41.83 2.83
1434 1973 1.299976 GAGGGTTCACCGGCAAGAT 59.700 57.895 0.00 0.00 46.96 2.40
1438 1977 0.036388 GGTTCACCGGCAAGATCAGA 60.036 55.000 0.00 0.00 0.00 3.27
1441 1980 0.976641 TCACCGGCAAGATCAGAAGT 59.023 50.000 0.00 0.00 0.00 3.01
1453 1992 6.426937 GCAAGATCAGAAGTAAAGTTACCACA 59.573 38.462 0.00 0.00 34.19 4.17
1564 2103 5.106673 GGTAACCATGTTGAAGAGTTACTGC 60.107 44.000 14.46 1.61 41.47 4.40
1573 2112 5.290493 TGAAGAGTTACTGCCTCAAAGAA 57.710 39.130 0.00 0.00 0.00 2.52
1575 2114 3.654414 AGAGTTACTGCCTCAAAGAACG 58.346 45.455 0.00 0.00 0.00 3.95
1618 2157 1.061411 CGGCATCGCAGTTGATGTG 59.939 57.895 5.71 0.00 45.98 3.21
1626 2165 1.870055 GCAGTTGATGTGGCCACCAG 61.870 60.000 32.62 14.58 32.34 4.00
1741 2280 6.013379 TGTGGTCAGAGATAAGGAATGTCTTT 60.013 38.462 0.00 0.00 36.09 2.52
1804 2343 5.368145 AGAAAGCATGAAGTGTCACTGTTA 58.632 37.500 6.18 0.00 36.31 2.41
1852 2397 2.802816 GGAACCGCTACAAGCATATCAG 59.197 50.000 0.00 0.00 42.58 2.90
1939 2484 2.442413 CAAGAATTGGCCCGGAAGTTA 58.558 47.619 0.73 0.00 43.94 2.24
1940 2485 2.420058 AGAATTGGCCCGGAAGTTAG 57.580 50.000 0.73 0.00 0.00 2.34
2004 2549 0.895530 CGCCTACTCTCCTGGAAACA 59.104 55.000 0.00 0.00 39.59 2.83
2056 2601 0.526211 GGGGTTTGGATTCGCAGTTC 59.474 55.000 0.00 0.00 0.00 3.01
2115 2660 1.202940 GGTCAGCTTGGAGGACCTTTT 60.203 52.381 11.89 0.00 45.99 2.27
2124 2669 5.885912 GCTTGGAGGACCTTTTGTATGATAA 59.114 40.000 0.00 0.00 37.04 1.75
2165 2710 3.216800 TGTGCATTATGCCCAGAAGATC 58.783 45.455 15.06 0.00 44.23 2.75
2186 2731 7.972301 AGATCATGTATTAAAGAGGAGGAAGG 58.028 38.462 0.00 0.00 0.00 3.46
2263 2814 2.270527 GAGGAAGTGGCAGAGGGC 59.729 66.667 0.00 0.00 43.74 5.19
2319 2870 4.141846 GCAGGTAGTGAAGAGGAATCATGA 60.142 45.833 0.00 0.00 0.00 3.07
2362 2913 3.588955 GATGCATGATGTCATACGCCTA 58.411 45.455 2.46 0.00 34.26 3.93
2398 2949 1.895131 GCCAAGGAAGAATGCTTTGGA 59.105 47.619 6.81 0.00 34.65 3.53
2429 2989 1.903877 TAGCTCTGCTTCTGGGGCAC 61.904 60.000 0.00 0.00 40.44 5.01
2467 3027 1.202417 CGTCGCATATCTGTTCAGGGT 60.202 52.381 0.00 0.00 0.00 4.34
2510 3070 2.498167 GTTCTGGTGCAACACATCTCT 58.502 47.619 0.00 0.00 39.98 3.10
2524 3084 2.007608 CATCTCTGTGTGCTCCATGTG 58.992 52.381 0.00 0.00 0.00 3.21
2527 3087 2.632512 TCTCTGTGTGCTCCATGTGTTA 59.367 45.455 0.00 0.00 0.00 2.41
2563 3123 8.125978 TCAATGTTGATTTTCTGAAGCCTATT 57.874 30.769 0.00 0.00 31.01 1.73
2581 3141 8.738645 AGCCTATTCTAACATCTTCGAAATTT 57.261 30.769 0.00 0.00 0.00 1.82
2590 3150 5.449304 ACATCTTCGAAATTTTTGTCGACC 58.551 37.500 14.12 0.00 45.35 4.79
2591 3151 4.477302 TCTTCGAAATTTTTGTCGACCC 57.523 40.909 14.12 0.00 45.35 4.46
2593 3153 4.577283 TCTTCGAAATTTTTGTCGACCCTT 59.423 37.500 14.12 0.00 45.35 3.95
2600 3160 2.472695 TTTGTCGACCCTTGATCTGG 57.527 50.000 14.12 0.00 0.00 3.86
2610 3170 3.107601 CCCTTGATCTGGAAGGTACTCA 58.892 50.000 8.95 0.00 38.49 3.41
2838 3419 4.582656 TGGTTCACCAGTAAATGAAACTGG 59.417 41.667 18.33 18.33 42.06 4.00
2859 3440 2.703007 GAGATGGAGTCAAGGTGCCTAT 59.297 50.000 0.00 0.00 0.00 2.57
2880 3461 3.772557 TTGGCATACAGCACATGACAGC 61.773 50.000 0.00 0.00 42.27 4.40
2887 3468 1.081641 GCACATGACAGCACTGCAC 60.082 57.895 0.00 0.00 33.34 4.57
2936 3517 4.818546 CAGAGTTTCTGTGTGAAGTTGGAT 59.181 41.667 0.00 0.00 39.58 3.41
2943 3524 5.624159 TCTGTGTGAAGTTGGATCTTTGAT 58.376 37.500 0.00 0.00 0.00 2.57
2957 3538 7.268586 TGGATCTTTGATAGAGCTAAGAACAC 58.731 38.462 0.00 0.00 39.29 3.32
2972 3553 2.093500 AGAACACTCAGTGTCTGCAACA 60.093 45.455 11.89 0.00 46.79 3.33
2974 3555 2.923121 ACACTCAGTGTCTGCAACATT 58.077 42.857 3.98 0.00 43.92 2.71
3010 3591 1.089920 CTGGCTTGAGCAACGCTATT 58.910 50.000 5.24 0.00 39.88 1.73
3064 3648 2.093473 CGCTGCAGCTGAGAGTGAC 61.093 63.158 34.22 3.85 39.32 3.67
3079 3663 2.435586 GACGTGCTGCAGCTGGAT 60.436 61.111 36.61 20.74 42.66 3.41
3087 3671 2.590007 GCAGCTGGATGGGCTACG 60.590 66.667 17.12 0.00 38.03 3.51
3113 3697 2.319844 CTCCAACCCTTTCTTGGCTTT 58.680 47.619 0.00 0.00 38.50 3.51
3126 3710 0.608035 TGGCTTTGTTTAGGAGGGCG 60.608 55.000 0.00 0.00 0.00 6.13
3179 3763 4.020218 TCTCTTCCTGGTCACACCTTAATG 60.020 45.833 0.00 0.00 39.58 1.90
3184 3768 1.271871 TGGTCACACCTTAATGGCCTG 60.272 52.381 3.32 0.00 41.44 4.85
3223 3807 7.392418 TGGGATTCTCTAATATTGATGAGCAG 58.608 38.462 0.00 0.00 0.00 4.24
3238 3822 2.037772 TGAGCAGACCTTTTCCTGTCTC 59.962 50.000 0.00 0.00 39.76 3.36
3291 3876 3.328535 AGGAAGGCTTTTGAAGGGAAA 57.671 42.857 0.00 0.00 0.00 3.13
3293 3878 4.037222 AGGAAGGCTTTTGAAGGGAAAAA 58.963 39.130 0.00 0.00 0.00 1.94
3347 3932 7.901322 AGAACTTAGGCATCTATACATATGGGA 59.099 37.037 7.80 0.43 0.00 4.37
3355 3940 5.134202 TCTATACATATGGGACGCAACAG 57.866 43.478 7.80 0.00 0.00 3.16
3376 3961 4.154918 CAGAGCTCAACCAAGTTGGAATAC 59.845 45.833 28.80 12.78 42.99 1.89
3383 3968 3.256704 ACCAAGTTGGAATACAGGAGGA 58.743 45.455 28.80 0.00 40.96 3.71
3395 3980 1.002366 CAGGAGGACGCGATGAAAAG 58.998 55.000 15.93 0.00 0.00 2.27
3403 3988 1.586028 GCGATGAAAAGCCTTGCCA 59.414 52.632 0.00 0.00 0.00 4.92
3405 3990 1.404583 GCGATGAAAAGCCTTGCCAAT 60.405 47.619 0.00 0.00 0.00 3.16
3468 4053 0.316204 GCATTGAACACCTTGCAGCT 59.684 50.000 0.00 0.00 35.22 4.24
3471 4056 1.597742 TTGAACACCTTGCAGCTCTC 58.402 50.000 0.00 0.00 0.00 3.20
3513 4098 6.438741 AGGACACATCAGAAGAGTTGATAGAA 59.561 38.462 0.00 0.00 33.67 2.10
3591 4177 8.534333 TTAGTCACATAAGAAATGTCACAGTC 57.466 34.615 0.00 0.00 0.00 3.51
3593 4179 6.648310 AGTCACATAAGAAATGTCACAGTCAG 59.352 38.462 0.00 0.00 0.00 3.51
3637 4223 2.879646 GAGAGGATTAGGTGATCGTCGT 59.120 50.000 0.00 0.00 42.67 4.34
3648 4234 3.924686 GGTGATCGTCGTTATTCACAAGT 59.075 43.478 16.19 0.00 40.14 3.16
3728 4314 6.746120 TCCTAAATTAATAGGCTGAGTCGAC 58.254 40.000 7.70 7.70 41.93 4.20
3742 4328 4.733850 TGAGTCGACTGTGCTATTAAGTG 58.266 43.478 25.58 0.00 0.00 3.16
3747 4333 3.000727 GACTGTGCTATTAAGTGGCGTT 58.999 45.455 0.00 0.00 37.07 4.84
3767 4353 3.744940 TTGCAAAGATTCTCCCCTGAT 57.255 42.857 0.00 0.00 0.00 2.90
3772 4358 0.849417 AGATTCTCCCCTGATTGGCC 59.151 55.000 0.00 0.00 0.00 5.36
3817 4403 8.980610 CAATTTTTATCAGACACATTTTGCTCA 58.019 29.630 0.00 0.00 0.00 4.26
3818 4404 8.752766 ATTTTTATCAGACACATTTTGCTCAG 57.247 30.769 0.00 0.00 0.00 3.35
3819 4405 3.844577 ATCAGACACATTTTGCTCAGC 57.155 42.857 0.00 0.00 0.00 4.26
3834 4420 3.013932 AGCAGGGAGGAGGCAAGG 61.014 66.667 0.00 0.00 0.00 3.61
3840 4426 0.332972 GGGAGGAGGCAAGGACATTT 59.667 55.000 0.00 0.00 0.00 2.32
3850 4436 2.362077 GCAAGGACATTTGAGGTGTTGT 59.638 45.455 0.00 0.00 0.00 3.32
3862 4448 7.633193 TTTGAGGTGTTGTAGTTGTTACATT 57.367 32.000 0.00 0.00 41.72 2.71
3875 4461 9.257651 GTAGTTGTTACATTAGTTTCTCAGTGT 57.742 33.333 0.00 0.00 32.27 3.55
3901 4487 4.829064 TTGCGCTGTTCTTTCTTGTTAT 57.171 36.364 9.73 0.00 0.00 1.89
3902 4488 4.145876 TGCGCTGTTCTTTCTTGTTATG 57.854 40.909 9.73 0.00 0.00 1.90
3911 4497 8.964476 TGTTCTTTCTTGTTATGACTTCTCTT 57.036 30.769 0.00 0.00 0.00 2.85
3912 4498 9.396022 TGTTCTTTCTTGTTATGACTTCTCTTT 57.604 29.630 0.00 0.00 0.00 2.52
3921 4507 6.536582 TGTTATGACTTCTCTTTATGAGCTGC 59.463 38.462 0.00 0.00 42.38 5.25
3936 4522 2.165845 GAGCTGCTTCCTGATTTGCATT 59.834 45.455 2.53 0.00 34.79 3.56
3943 4529 4.321452 GCTTCCTGATTTGCATTGAAGACA 60.321 41.667 0.00 0.00 37.41 3.41
3944 4530 5.775686 CTTCCTGATTTGCATTGAAGACAA 58.224 37.500 0.00 0.00 37.41 3.18
3945 4531 5.381174 TCCTGATTTGCATTGAAGACAAG 57.619 39.130 0.00 0.00 39.46 3.16
3946 4532 4.828939 TCCTGATTTGCATTGAAGACAAGT 59.171 37.500 0.00 0.00 39.46 3.16
3954 4540 6.545504 TGCATTGAAGACAAGTAAGAAGAC 57.454 37.500 0.00 0.00 39.46 3.01
3981 4567 2.489722 GTGGGTCAGCTTCTTGATTTCC 59.510 50.000 0.00 0.00 0.00 3.13
3985 4571 2.160417 GTCAGCTTCTTGATTTCCGTGG 59.840 50.000 0.00 0.00 0.00 4.94
3997 4583 4.160065 TGATTTCCGTGGCATGATGATTTT 59.840 37.500 8.63 0.00 0.00 1.82
4017 4603 8.912988 TGATTTTCTAGCTCCAAAGAAGAAAAA 58.087 29.630 17.65 4.83 42.70 1.94
4026 4612 7.040132 AGCTCCAAAGAAGAAAAAGAACTATGG 60.040 37.037 0.00 0.00 0.00 2.74
4028 4614 6.015434 TCCAAAGAAGAAAAAGAACTATGGGC 60.015 38.462 0.00 0.00 0.00 5.36
4033 4619 0.039035 AAAAGAACTATGGGCCGGCA 59.961 50.000 30.85 9.36 0.00 5.69
4035 4621 1.136828 AAGAACTATGGGCCGGCATA 58.863 50.000 30.85 17.33 0.00 3.14
4055 4641 0.242825 CTTGCCAGCACACAATCCTG 59.757 55.000 0.00 0.00 0.00 3.86
4063 4649 1.952367 GCACACAATCCTGAAGGGGAG 60.952 57.143 0.00 0.00 38.92 4.30
4073 4659 2.224867 CCTGAAGGGGAGAACACATGTT 60.225 50.000 0.00 0.00 41.64 2.71
4074 4660 6.328356 TCCTGAAGGGGAGAACACATGTTC 62.328 50.000 15.51 15.51 43.87 3.18
4090 4676 8.268850 ACACATGTTCTCTTATTCCACAATAC 57.731 34.615 0.00 0.00 0.00 1.89
4092 4678 7.064609 CACATGTTCTCTTATTCCACAATACGT 59.935 37.037 0.00 0.00 0.00 3.57
4093 4679 7.277981 ACATGTTCTCTTATTCCACAATACGTC 59.722 37.037 0.00 0.00 0.00 4.34
4094 4680 6.931838 TGTTCTCTTATTCCACAATACGTCT 58.068 36.000 0.00 0.00 0.00 4.18
4096 4682 7.876068 TGTTCTCTTATTCCACAATACGTCTTT 59.124 33.333 0.00 0.00 0.00 2.52
4097 4683 8.381387 GTTCTCTTATTCCACAATACGTCTTTC 58.619 37.037 0.00 0.00 0.00 2.62
4098 4684 7.039882 TCTCTTATTCCACAATACGTCTTTCC 58.960 38.462 0.00 0.00 0.00 3.13
4099 4685 6.703319 TCTTATTCCACAATACGTCTTTCCA 58.297 36.000 0.00 0.00 0.00 3.53
4128 4743 4.997395 TCTGTTGCCTAGCTACTTTCTTTG 59.003 41.667 0.00 0.00 35.51 2.77
4129 4744 4.072131 TGTTGCCTAGCTACTTTCTTTGG 58.928 43.478 0.00 0.00 35.51 3.28
4130 4745 2.711542 TGCCTAGCTACTTTCTTTGGC 58.288 47.619 8.94 8.94 39.53 4.52
4131 4746 2.017782 GCCTAGCTACTTTCTTTGGCC 58.982 52.381 0.00 0.00 33.66 5.36
4132 4747 2.618045 GCCTAGCTACTTTCTTTGGCCA 60.618 50.000 0.00 0.00 33.66 5.36
4133 4748 3.010420 CCTAGCTACTTTCTTTGGCCAC 58.990 50.000 3.88 0.00 0.00 5.01
4134 4749 2.656947 AGCTACTTTCTTTGGCCACA 57.343 45.000 3.88 0.00 0.00 4.17
4135 4750 3.160679 AGCTACTTTCTTTGGCCACAT 57.839 42.857 3.88 0.00 0.00 3.21
4136 4751 2.821969 AGCTACTTTCTTTGGCCACATG 59.178 45.455 3.88 0.00 0.00 3.21
4137 4752 2.672195 GCTACTTTCTTTGGCCACATGC 60.672 50.000 3.88 0.00 40.16 4.06
4138 4753 1.708341 ACTTTCTTTGGCCACATGCT 58.292 45.000 3.88 0.00 40.92 3.79
4139 4754 1.342174 ACTTTCTTTGGCCACATGCTG 59.658 47.619 3.88 0.00 40.92 4.41
4140 4755 0.033781 TTTCTTTGGCCACATGCTGC 59.966 50.000 3.88 0.00 40.92 5.25
4141 4756 0.828762 TTCTTTGGCCACATGCTGCT 60.829 50.000 3.88 0.00 40.92 4.24
4142 4757 0.038021 TCTTTGGCCACATGCTGCTA 59.962 50.000 3.88 0.00 40.92 3.49
4143 4758 0.454600 CTTTGGCCACATGCTGCTAG 59.545 55.000 3.88 0.00 40.92 3.42
4144 4759 0.038021 TTTGGCCACATGCTGCTAGA 59.962 50.000 3.88 0.00 40.92 2.43
4145 4760 0.038021 TTGGCCACATGCTGCTAGAA 59.962 50.000 3.88 0.00 40.92 2.10
4146 4761 0.038021 TGGCCACATGCTGCTAGAAA 59.962 50.000 0.00 0.00 40.92 2.52
4147 4762 1.341285 TGGCCACATGCTGCTAGAAAT 60.341 47.619 0.00 0.00 40.92 2.17
4148 4763 1.753073 GGCCACATGCTGCTAGAAATT 59.247 47.619 0.00 0.00 40.92 1.82
4149 4764 2.223665 GGCCACATGCTGCTAGAAATTC 60.224 50.000 0.00 0.00 40.92 2.17
4150 4765 2.223665 GCCACATGCTGCTAGAAATTCC 60.224 50.000 0.00 0.00 36.87 3.01
4151 4766 3.018856 CCACATGCTGCTAGAAATTCCA 58.981 45.455 0.00 0.00 0.00 3.53
4152 4767 3.635373 CCACATGCTGCTAGAAATTCCAT 59.365 43.478 0.00 0.00 0.00 3.41
4153 4768 4.261489 CCACATGCTGCTAGAAATTCCATC 60.261 45.833 0.00 0.00 0.00 3.51
4154 4769 4.579340 CACATGCTGCTAGAAATTCCATCT 59.421 41.667 0.00 0.00 0.00 2.90
4155 4770 4.579340 ACATGCTGCTAGAAATTCCATCTG 59.421 41.667 0.00 0.00 0.00 2.90
4156 4771 3.548770 TGCTGCTAGAAATTCCATCTGG 58.451 45.455 0.00 0.00 0.00 3.86
4157 4772 3.200605 TGCTGCTAGAAATTCCATCTGGA 59.799 43.478 0.00 0.00 43.73 3.86
4167 4782 1.838112 TCCATCTGGAATGGTGTTGC 58.162 50.000 0.00 0.00 42.18 4.17
4168 4783 1.355381 TCCATCTGGAATGGTGTTGCT 59.645 47.619 0.00 0.00 42.18 3.91
4169 4784 1.475280 CCATCTGGAATGGTGTTGCTG 59.525 52.381 0.00 0.00 37.39 4.41
4170 4785 1.135199 CATCTGGAATGGTGTTGCTGC 60.135 52.381 0.00 0.00 0.00 5.25
4171 4786 0.178995 TCTGGAATGGTGTTGCTGCA 60.179 50.000 0.00 0.00 0.00 4.41
4172 4787 0.675083 CTGGAATGGTGTTGCTGCAA 59.325 50.000 11.69 11.69 0.00 4.08
4173 4788 0.675083 TGGAATGGTGTTGCTGCAAG 59.325 50.000 16.53 0.00 0.00 4.01
4221 4836 9.695526 TCCTGATGAAATTTTGTAACTGATTTG 57.304 29.630 0.00 0.00 0.00 2.32
4222 4837 9.480053 CCTGATGAAATTTTGTAACTGATTTGT 57.520 29.630 0.00 0.00 0.00 2.83
4224 4839 9.474920 TGATGAAATTTTGTAACTGATTTGTCC 57.525 29.630 0.00 0.00 0.00 4.02
4225 4840 9.696917 GATGAAATTTTGTAACTGATTTGTCCT 57.303 29.630 0.00 0.00 0.00 3.85
4226 4841 9.696917 ATGAAATTTTGTAACTGATTTGTCCTC 57.303 29.630 0.00 0.00 0.00 3.71
4227 4842 8.141268 TGAAATTTTGTAACTGATTTGTCCTCC 58.859 33.333 0.00 0.00 0.00 4.30
4228 4843 7.839680 AATTTTGTAACTGATTTGTCCTCCT 57.160 32.000 0.00 0.00 0.00 3.69
4229 4844 6.633500 TTTTGTAACTGATTTGTCCTCCTG 57.367 37.500 0.00 0.00 0.00 3.86
4230 4845 4.974645 TGTAACTGATTTGTCCTCCTGT 57.025 40.909 0.00 0.00 0.00 4.00
4231 4846 5.304686 TGTAACTGATTTGTCCTCCTGTT 57.695 39.130 0.00 0.00 0.00 3.16
4232 4847 6.428083 TGTAACTGATTTGTCCTCCTGTTA 57.572 37.500 0.00 0.00 0.00 2.41
4233 4848 7.016153 TGTAACTGATTTGTCCTCCTGTTAT 57.984 36.000 0.00 0.00 0.00 1.89
4234 4849 7.458397 TGTAACTGATTTGTCCTCCTGTTATT 58.542 34.615 0.00 0.00 0.00 1.40
4235 4850 8.598916 TGTAACTGATTTGTCCTCCTGTTATTA 58.401 33.333 0.00 0.00 0.00 0.98
4236 4851 9.099454 GTAACTGATTTGTCCTCCTGTTATTAG 57.901 37.037 0.00 0.00 0.00 1.73
4237 4852 7.496346 ACTGATTTGTCCTCCTGTTATTAGA 57.504 36.000 0.00 0.00 0.00 2.10
4238 4853 7.918076 ACTGATTTGTCCTCCTGTTATTAGAA 58.082 34.615 0.00 0.00 0.00 2.10
4239 4854 8.383175 ACTGATTTGTCCTCCTGTTATTAGAAA 58.617 33.333 0.00 0.00 0.00 2.52
4240 4855 9.231297 CTGATTTGTCCTCCTGTTATTAGAAAA 57.769 33.333 0.00 0.00 0.00 2.29
4241 4856 9.581289 TGATTTGTCCTCCTGTTATTAGAAAAA 57.419 29.630 0.00 0.00 0.00 1.94
4242 4857 9.841880 GATTTGTCCTCCTGTTATTAGAAAAAC 57.158 33.333 0.00 0.00 0.00 2.43
4243 4858 8.990163 TTTGTCCTCCTGTTATTAGAAAAACT 57.010 30.769 0.00 0.00 0.00 2.66
4244 4859 8.990163 TTGTCCTCCTGTTATTAGAAAAACTT 57.010 30.769 0.00 0.00 0.00 2.66
4245 4860 8.391075 TGTCCTCCTGTTATTAGAAAAACTTG 57.609 34.615 0.00 0.00 0.00 3.16
4246 4861 7.996644 TGTCCTCCTGTTATTAGAAAAACTTGT 59.003 33.333 0.00 0.00 0.00 3.16
4247 4862 8.504815 GTCCTCCTGTTATTAGAAAAACTTGTC 58.495 37.037 0.00 0.00 0.00 3.18
4248 4863 7.386848 TCCTCCTGTTATTAGAAAAACTTGTCG 59.613 37.037 0.00 0.00 0.00 4.35
4249 4864 7.172703 CCTCCTGTTATTAGAAAAACTTGTCGT 59.827 37.037 0.00 0.00 0.00 4.34
4250 4865 9.199982 CTCCTGTTATTAGAAAAACTTGTCGTA 57.800 33.333 0.00 0.00 0.00 3.43
4251 4866 9.715121 TCCTGTTATTAGAAAAACTTGTCGTAT 57.285 29.630 0.00 0.00 0.00 3.06
4257 4872 5.587033 AGAAAAACTTGTCGTATTCGTCC 57.413 39.130 0.00 0.00 38.33 4.79
4258 4873 4.450080 AGAAAAACTTGTCGTATTCGTCCC 59.550 41.667 0.00 0.00 38.33 4.46
4259 4874 3.389925 AAACTTGTCGTATTCGTCCCA 57.610 42.857 0.00 0.00 38.33 4.37
4260 4875 2.358939 ACTTGTCGTATTCGTCCCAC 57.641 50.000 0.00 0.00 38.33 4.61
4261 4876 1.265568 CTTGTCGTATTCGTCCCACG 58.734 55.000 0.00 0.00 44.19 4.94
4262 4877 0.109179 TTGTCGTATTCGTCCCACGG 60.109 55.000 0.00 0.00 42.81 4.94
4263 4878 1.226773 GTCGTATTCGTCCCACGGG 60.227 63.158 0.00 0.00 42.81 5.28
4264 4879 1.378382 TCGTATTCGTCCCACGGGA 60.378 57.895 0.00 0.00 42.81 5.14
4265 4880 1.065273 CGTATTCGTCCCACGGGAG 59.935 63.158 4.63 0.11 46.16 4.30
4266 4881 1.440476 GTATTCGTCCCACGGGAGG 59.560 63.158 17.11 17.11 46.16 4.30
4267 4882 2.428925 TATTCGTCCCACGGGAGGC 61.429 63.158 18.18 1.55 46.16 4.70
4273 4888 4.109675 CCCACGGGAGGCGGAATT 62.110 66.667 0.00 0.00 37.50 2.17
4274 4889 2.737881 CCCACGGGAGGCGGAATTA 61.738 63.158 0.00 0.00 37.50 1.40
4275 4890 1.222387 CCACGGGAGGCGGAATTAA 59.778 57.895 0.00 0.00 0.00 1.40
4276 4891 0.179029 CCACGGGAGGCGGAATTAAT 60.179 55.000 0.00 0.00 0.00 1.40
4277 4892 1.675552 CACGGGAGGCGGAATTAATT 58.324 50.000 0.00 0.00 0.00 1.40
4278 4893 1.333619 CACGGGAGGCGGAATTAATTG 59.666 52.381 5.17 0.00 0.00 2.32
4279 4894 1.064979 ACGGGAGGCGGAATTAATTGT 60.065 47.619 5.17 0.00 0.00 2.71
4280 4895 2.021457 CGGGAGGCGGAATTAATTGTT 58.979 47.619 5.17 0.00 0.00 2.83
4281 4896 2.223479 CGGGAGGCGGAATTAATTGTTG 60.223 50.000 5.17 0.00 0.00 3.33
4282 4897 2.100749 GGGAGGCGGAATTAATTGTTGG 59.899 50.000 5.17 0.00 0.00 3.77
4283 4898 2.100749 GGAGGCGGAATTAATTGTTGGG 59.899 50.000 5.17 0.00 0.00 4.12
4284 4899 3.020984 GAGGCGGAATTAATTGTTGGGA 58.979 45.455 5.17 0.00 0.00 4.37
4285 4900 3.436243 AGGCGGAATTAATTGTTGGGAA 58.564 40.909 5.17 0.00 0.00 3.97
4286 4901 3.835395 AGGCGGAATTAATTGTTGGGAAA 59.165 39.130 5.17 0.00 0.00 3.13
4287 4902 3.930229 GGCGGAATTAATTGTTGGGAAAC 59.070 43.478 5.17 0.00 0.00 2.78
4288 4903 3.610677 GCGGAATTAATTGTTGGGAAACG 59.389 43.478 5.17 0.00 0.00 3.60
4289 4904 4.170256 CGGAATTAATTGTTGGGAAACGG 58.830 43.478 5.17 0.00 0.00 4.44
4290 4905 4.082679 CGGAATTAATTGTTGGGAAACGGA 60.083 41.667 5.17 0.00 0.00 4.69
4291 4906 5.407502 GGAATTAATTGTTGGGAAACGGAG 58.592 41.667 5.17 0.00 0.00 4.63
4292 4907 3.926821 TTAATTGTTGGGAAACGGAGC 57.073 42.857 0.00 0.00 0.00 4.70
4293 4908 1.698506 AATTGTTGGGAAACGGAGCA 58.301 45.000 0.00 0.00 0.00 4.26
4294 4909 1.923356 ATTGTTGGGAAACGGAGCAT 58.077 45.000 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.817099 GCTGAGAATCCGGTGCAGG 60.817 63.158 0.00 0.00 0.00 4.85
5 6 2.169789 CGCTGAGAATCCGGTGCAG 61.170 63.158 0.00 4.46 0.00 4.41
7 8 2.892425 CCGCTGAGAATCCGGTGC 60.892 66.667 0.00 0.00 35.58 5.01
9 10 4.514577 CGCCGCTGAGAATCCGGT 62.515 66.667 0.00 0.00 41.21 5.28
10 11 4.207281 TCGCCGCTGAGAATCCGG 62.207 66.667 0.00 0.00 41.92 5.14
11 12 2.956964 GTCGCCGCTGAGAATCCG 60.957 66.667 0.00 0.00 0.00 4.18
12 13 2.956964 CGTCGCCGCTGAGAATCC 60.957 66.667 0.00 0.00 0.00 3.01
13 14 2.956964 CCGTCGCCGCTGAGAATC 60.957 66.667 0.00 0.00 0.00 2.52
91 92 3.286751 GCAAGCGCCAGGTCAACA 61.287 61.111 2.29 0.00 0.00 3.33
223 224 2.183300 GTAGCACCGCCATCGACA 59.817 61.111 0.00 0.00 38.10 4.35
227 228 4.427394 CTCTGTAGCACCGCCATC 57.573 61.111 0.00 0.00 0.00 3.51
279 280 2.859273 CTTCTGTCCGCCGCCATTCT 62.859 60.000 0.00 0.00 0.00 2.40
280 281 2.435938 TTCTGTCCGCCGCCATTC 60.436 61.111 0.00 0.00 0.00 2.67
293 294 1.277557 CAGTTCCCACTCTCCCTTCTG 59.722 57.143 0.00 0.00 0.00 3.02
305 306 2.616797 TTTCTGTGCGGCAGTTCCCA 62.617 55.000 1.18 0.00 45.23 4.37
318 319 1.299976 GCGGGAGGGACATTTCTGT 59.700 57.895 0.00 0.00 38.67 3.41
320 321 1.497309 TTGGCGGGAGGGACATTTCT 61.497 55.000 0.00 0.00 0.00 2.52
335 337 4.420143 TCGCTAGCGAGATTTGGC 57.580 55.556 34.66 0.00 44.01 4.52
379 381 0.475044 ACCTTTAGAAACACGGGGCA 59.525 50.000 0.00 0.00 0.00 5.36
406 408 3.758931 GGGGCGCGGCAAATTCTT 61.759 61.111 34.30 0.00 0.00 2.52
417 419 3.490800 TTAAAAGAAATTACGGGGCGC 57.509 42.857 0.00 0.00 0.00 6.53
425 427 5.047872 GGACCACGGCCTTTAAAAGAAATTA 60.048 40.000 0.00 0.00 0.00 1.40
451 453 2.921754 GTGGCACGAACAGATACAGTAC 59.078 50.000 0.00 0.00 0.00 2.73
455 457 2.831685 AAGTGGCACGAACAGATACA 57.168 45.000 12.71 0.00 0.00 2.29
491 493 2.730928 CTGCAAAATAACTGCCGGTTTG 59.269 45.455 1.90 5.14 39.13 2.93
496 498 2.241722 CGAACTGCAAAATAACTGCCG 58.758 47.619 0.00 0.00 39.13 5.69
562 564 9.232473 GGTTTGAACTCCAAAATAAGATCTAGT 57.768 33.333 0.00 0.00 45.40 2.57
563 565 9.231297 TGGTTTGAACTCCAAAATAAGATCTAG 57.769 33.333 0.00 0.00 45.40 2.43
564 566 9.581289 TTGGTTTGAACTCCAAAATAAGATCTA 57.419 29.630 0.00 0.00 45.40 1.98
565 567 8.477419 TTGGTTTGAACTCCAAAATAAGATCT 57.523 30.769 0.00 0.00 45.40 2.75
566 568 8.576442 TCTTGGTTTGAACTCCAAAATAAGATC 58.424 33.333 0.00 0.00 45.40 2.75
567 569 8.477419 TCTTGGTTTGAACTCCAAAATAAGAT 57.523 30.769 0.00 0.00 45.40 2.40
568 570 7.889873 TCTTGGTTTGAACTCCAAAATAAGA 57.110 32.000 0.00 0.00 45.40 2.10
573 575 9.898152 AAAATTATCTTGGTTTGAACTCCAAAA 57.102 25.926 0.00 0.00 45.40 2.44
574 576 9.898152 AAAAATTATCTTGGTTTGAACTCCAAA 57.102 25.926 0.00 0.00 42.14 3.28
576 578 9.974980 GTAAAAATTATCTTGGTTTGAACTCCA 57.025 29.630 0.00 0.00 0.00 3.86
577 579 9.419297 GGTAAAAATTATCTTGGTTTGAACTCC 57.581 33.333 0.00 0.00 0.00 3.85
583 585 7.117667 GGCACAGGTAAAAATTATCTTGGTTTG 59.882 37.037 0.00 0.00 0.00 2.93
600 602 1.133809 AAGCAAGAGGGGCACAGGTA 61.134 55.000 0.00 0.00 0.00 3.08
603 605 0.036732 TACAAGCAAGAGGGGCACAG 59.963 55.000 0.00 0.00 0.00 3.66
619 621 5.118286 CCTTGCACATATGACAGTCATACA 58.882 41.667 23.08 14.54 41.62 2.29
620 622 5.007039 CACCTTGCACATATGACAGTCATAC 59.993 44.000 23.08 12.36 41.62 2.39
631 633 4.858850 TCCAAGAATCACCTTGCACATAT 58.141 39.130 0.00 0.00 41.53 1.78
633 635 3.159213 TCCAAGAATCACCTTGCACAT 57.841 42.857 0.00 0.00 41.53 3.21
635 637 4.525912 AAATCCAAGAATCACCTTGCAC 57.474 40.909 0.00 0.00 41.53 4.57
636 638 4.462483 GGTAAATCCAAGAATCACCTTGCA 59.538 41.667 0.00 0.00 41.53 4.08
662 664 6.553100 TCCACCTCAAACTTTTGGAATGTATT 59.447 34.615 1.94 0.00 38.66 1.89
684 688 7.232534 ACTTCCAAATTTTATAGTTGCTGTCCA 59.767 33.333 0.00 0.00 30.63 4.02
719 723 0.822121 GCTCACACCGGACCCTTTTT 60.822 55.000 9.46 0.00 0.00 1.94
738 742 5.410746 CCGATGTTCTCAATTCATAGGATGG 59.589 44.000 0.00 0.00 36.80 3.51
754 758 1.201647 TGGACGAGAACTCCGATGTTC 59.798 52.381 10.97 10.97 44.67 3.18
760 764 2.080286 ATTGTTGGACGAGAACTCCG 57.920 50.000 0.00 0.00 0.00 4.63
784 788 2.367030 TTTTCGGAGCATGCAAATGG 57.633 45.000 21.98 4.18 0.00 3.16
805 812 2.034124 AGCCGGCATAATGCTTCATTT 58.966 42.857 31.54 0.00 44.28 2.32
808 815 0.394216 ACAGCCGGCATAATGCTTCA 60.394 50.000 31.54 0.00 44.28 3.02
809 816 0.740737 AACAGCCGGCATAATGCTTC 59.259 50.000 31.54 0.00 44.28 3.86
813 820 1.660104 GCAAAAACAGCCGGCATAATG 59.340 47.619 31.54 20.78 0.00 1.90
816 823 0.038709 GTGCAAAAACAGCCGGCATA 60.039 50.000 31.54 0.00 36.79 3.14
818 825 2.105930 GTGCAAAAACAGCCGGCA 59.894 55.556 31.54 0.00 0.00 5.69
819 826 2.105930 TGTGCAAAAACAGCCGGC 59.894 55.556 21.89 21.89 0.00 6.13
823 830 2.099756 AGAGGAAGTGTGCAAAAACAGC 59.900 45.455 0.00 0.00 0.00 4.40
827 834 5.659440 AAAAGAGAGGAAGTGTGCAAAAA 57.341 34.783 0.00 0.00 0.00 1.94
887 895 9.822185 AACTTCAATGTTCTCAGCTAAAATTTT 57.178 25.926 8.75 8.75 0.00 1.82
888 896 9.252962 CAACTTCAATGTTCTCAGCTAAAATTT 57.747 29.630 0.00 0.00 0.00 1.82
889 897 8.416329 ACAACTTCAATGTTCTCAGCTAAAATT 58.584 29.630 0.00 0.00 0.00 1.82
890 898 7.945134 ACAACTTCAATGTTCTCAGCTAAAAT 58.055 30.769 0.00 0.00 0.00 1.82
891 899 7.333528 ACAACTTCAATGTTCTCAGCTAAAA 57.666 32.000 0.00 0.00 0.00 1.52
914 922 5.288472 GCAAATGGACAAATTATTGGACGAC 59.712 40.000 0.00 0.00 41.01 4.34
916 924 4.566360 GGCAAATGGACAAATTATTGGACG 59.434 41.667 0.00 0.00 41.01 4.79
918 926 6.371595 AAGGCAAATGGACAAATTATTGGA 57.628 33.333 0.00 0.00 41.01 3.53
934 942 3.190874 CGCCAACAACTTTAAAGGCAAA 58.809 40.909 19.14 0.00 42.10 3.68
939 947 6.036626 ACAAAATTCCGCCAACAACTTTAAAG 59.963 34.615 13.76 13.76 0.00 1.85
941 949 5.420409 ACAAAATTCCGCCAACAACTTTAA 58.580 33.333 0.00 0.00 0.00 1.52
949 957 3.198872 TCCAAAACAAAATTCCGCCAAC 58.801 40.909 0.00 0.00 0.00 3.77
953 961 9.753669 CTAATTTATTCCAAAACAAAATTCCGC 57.246 29.630 0.00 0.00 33.24 5.54
976 984 5.423931 TGGCTACCTACAATGTGTGATCTAA 59.576 40.000 0.00 0.00 0.00 2.10
994 1002 2.866351 TGGTTTGGTAAGGTTGGCTAC 58.134 47.619 0.00 0.00 0.00 3.58
995 1003 3.818295 ATGGTTTGGTAAGGTTGGCTA 57.182 42.857 0.00 0.00 0.00 3.93
996 1004 2.694616 ATGGTTTGGTAAGGTTGGCT 57.305 45.000 0.00 0.00 0.00 4.75
997 1005 2.352323 CGAATGGTTTGGTAAGGTTGGC 60.352 50.000 0.00 0.00 0.00 4.52
1003 1011 3.368843 GGACGTACGAATGGTTTGGTAAG 59.631 47.826 24.41 0.00 33.79 2.34
1021 1029 1.101635 TGTATCGGAGGCAGAGGACG 61.102 60.000 0.00 0.00 0.00 4.79
1029 1037 1.136305 TGTTGCTAGTGTATCGGAGGC 59.864 52.381 0.00 0.00 0.00 4.70
1035 1043 3.190874 GCAGGACTGTTGCTAGTGTATC 58.809 50.000 0.82 0.00 38.51 2.24
1041 1049 1.674221 GGAGTGCAGGACTGTTGCTAG 60.674 57.143 0.00 0.00 42.02 3.42
1042 1050 0.321671 GGAGTGCAGGACTGTTGCTA 59.678 55.000 0.00 0.00 42.02 3.49
1056 1064 0.958091 CTATCGGAGGAGCAGGAGTG 59.042 60.000 0.00 0.00 0.00 3.51
1057 1065 0.825840 GCTATCGGAGGAGCAGGAGT 60.826 60.000 9.21 0.00 36.97 3.85
1058 1066 0.825425 TGCTATCGGAGGAGCAGGAG 60.825 60.000 12.03 0.00 40.81 3.69
1082 1090 3.533547 CTTTGAGCTCAGATTCAGAGGG 58.466 50.000 17.43 0.00 33.72 4.30
1088 1096 2.983229 TGAGGCTTTGAGCTCAGATTC 58.017 47.619 17.43 11.69 41.99 2.52
1089 1097 3.080319 GTTGAGGCTTTGAGCTCAGATT 58.920 45.455 17.43 2.32 41.99 2.40
1168 1176 3.591254 GAAGGTCGCCGCCTCTGTT 62.591 63.158 0.67 0.00 38.03 3.16
1289 1297 2.358737 CTTGAACCGCTCCGCCTT 60.359 61.111 0.00 0.00 0.00 4.35
1317 1325 1.535462 CAACAAAGATGTCGGTGGTCC 59.465 52.381 0.00 0.00 39.40 4.46
1326 1334 3.005554 CTGATCTCGCCAACAAAGATGT 58.994 45.455 0.00 0.00 43.14 3.06
1336 1344 4.804420 AGGCCCCTGATCTCGCCA 62.804 66.667 0.00 0.00 44.18 5.69
1434 1973 7.383687 CCATACTGTGGTAACTTTACTTCTGA 58.616 38.462 0.00 0.00 43.44 3.27
1453 1992 0.552848 CACCAGGCATTCCCCATACT 59.447 55.000 0.00 0.00 0.00 2.12
1509 2048 4.689812 CGGCATCAAAATCCAATTTCAACA 59.310 37.500 0.00 0.00 0.00 3.33
1511 2050 3.683822 GCGGCATCAAAATCCAATTTCAA 59.316 39.130 0.00 0.00 0.00 2.69
1547 2086 4.623932 TGAGGCAGTAACTCTTCAACAT 57.376 40.909 0.00 0.00 35.98 2.71
1551 2090 4.955811 TCTTTGAGGCAGTAACTCTTCA 57.044 40.909 0.00 0.00 35.98 3.02
1553 2092 4.058817 CGTTCTTTGAGGCAGTAACTCTT 58.941 43.478 0.00 0.00 35.98 2.85
1564 2103 2.169832 TCTTCAGCCGTTCTTTGAGG 57.830 50.000 0.00 0.00 0.00 3.86
1618 2157 0.177604 CTCTCATCTCACTGGTGGCC 59.822 60.000 0.00 0.00 0.00 5.36
1626 2165 1.340889 CTGCTAGGCCTCTCATCTCAC 59.659 57.143 9.68 0.00 0.00 3.51
1673 2212 3.756434 TCCAGGACCACGATGAAATTTTC 59.244 43.478 2.05 2.05 0.00 2.29
1678 2217 1.905894 TCATCCAGGACCACGATGAAA 59.094 47.619 16.99 1.21 39.46 2.69
1685 2224 2.094675 CCAAACATCATCCAGGACCAC 58.905 52.381 0.00 0.00 0.00 4.16
1741 2280 3.537580 GCCGGTACAATTAGATGTTGGA 58.462 45.455 1.90 0.00 34.75 3.53
1804 2343 1.352083 TTGCAGACTCCCTAGTTGCT 58.648 50.000 11.28 0.00 38.97 3.91
1852 2397 0.819259 TGCAGAACAACAGCCAGGAC 60.819 55.000 0.00 0.00 0.00 3.85
1939 2484 2.880890 CAAGCCTTGACACTTTGCTACT 59.119 45.455 0.00 0.00 0.00 2.57
1940 2485 2.605580 GCAAGCCTTGACACTTTGCTAC 60.606 50.000 9.04 0.00 0.00 3.58
1969 2514 1.816259 GCGGCCAATGCATGCAATT 60.816 52.632 26.68 16.11 39.42 2.32
2004 2549 3.037549 TCCCATTCAGCAAAAGTTGGTT 58.962 40.909 0.00 0.00 39.79 3.67
2056 2601 4.023107 GCATCAGGGATCACATCTTTCATG 60.023 45.833 0.00 0.00 0.00 3.07
2154 2699 6.429385 CCTCTTTAATACATGATCTTCTGGGC 59.571 42.308 0.00 0.00 0.00 5.36
2165 2710 9.277783 CATTACCTTCCTCCTCTTTAATACATG 57.722 37.037 0.00 0.00 0.00 3.21
2186 2731 3.131396 CCGTAATCCACTGCCTCATTAC 58.869 50.000 0.00 0.00 0.00 1.89
2263 2814 2.941453 TCACAAGCTCGGCTAAGTAG 57.059 50.000 0.00 0.00 38.25 2.57
2269 2820 0.037326 TTCGATTCACAAGCTCGGCT 60.037 50.000 0.00 0.00 42.56 5.52
2319 2870 1.594293 CAGTGTTTCAGTCGCCCGT 60.594 57.895 0.00 0.00 0.00 5.28
2362 2913 0.396974 TGGCTTTGTTGAGGGCAAGT 60.397 50.000 0.00 0.00 34.01 3.16
2420 2980 0.704664 TCTACAGAGAGTGCCCCAGA 59.295 55.000 0.00 0.00 0.00 3.86
2467 3027 4.681744 GGCTCAGTTGTTCAATGTTTTCA 58.318 39.130 0.00 0.00 0.00 2.69
2510 3070 1.271325 CCCTAACACATGGAGCACACA 60.271 52.381 0.00 0.00 0.00 3.72
2514 3074 0.911769 CCTCCCTAACACATGGAGCA 59.088 55.000 0.00 0.00 43.56 4.26
2524 3084 5.741011 TCAACATTGATACACCTCCCTAAC 58.259 41.667 0.00 0.00 31.01 2.34
2527 3087 5.456921 AATCAACATTGATACACCTCCCT 57.543 39.130 7.52 0.00 46.60 4.20
2563 3123 8.007716 GTCGACAAAAATTTCGAAGATGTTAGA 58.992 33.333 11.55 2.95 45.35 2.10
2581 3141 1.974957 TCCAGATCAAGGGTCGACAAA 59.025 47.619 18.91 0.00 0.00 2.83
2590 3150 6.268617 TGATATGAGTACCTTCCAGATCAAGG 59.731 42.308 8.43 8.43 45.41 3.61
2591 3151 7.295322 TGATATGAGTACCTTCCAGATCAAG 57.705 40.000 0.00 0.00 36.13 3.02
2593 3153 7.675161 TTTGATATGAGTACCTTCCAGATCA 57.325 36.000 0.00 0.00 36.93 2.92
2600 3160 6.433766 GCAGCATTTTGATATGAGTACCTTC 58.566 40.000 0.00 0.00 0.00 3.46
2610 3170 5.129815 ACTTCATTGGGCAGCATTTTGATAT 59.870 36.000 0.00 0.00 0.00 1.63
2650 3210 3.869065 TCTAAGACCCAAATAACGCAGG 58.131 45.455 0.00 0.00 0.00 4.85
2704 3264 3.955524 TCCAAGTTTTGTAACCTCCCA 57.044 42.857 0.00 0.00 34.71 4.37
2753 3313 3.492756 ACAACATTGTTTGGCAAATACGC 59.507 39.130 16.74 3.60 40.91 4.42
2782 3342 5.351465 CGCATACAGGTATCTCAACTTTTGT 59.649 40.000 0.00 0.00 0.00 2.83
2826 3407 6.373005 TGACTCCATCTCCAGTTTCATTTA 57.627 37.500 0.00 0.00 0.00 1.40
2832 3413 2.982488 ACCTTGACTCCATCTCCAGTTT 59.018 45.455 0.00 0.00 0.00 2.66
2838 3419 0.908198 AGGCACCTTGACTCCATCTC 59.092 55.000 0.00 0.00 18.29 2.75
2859 3440 2.086094 CTGTCATGTGCTGTATGCCAA 58.914 47.619 0.00 0.00 42.00 4.52
2887 3468 2.008329 GCTTTGATGCACTGGAGAGAG 58.992 52.381 0.00 0.00 0.00 3.20
2936 3517 7.177568 ACTGAGTGTTCTTAGCTCTATCAAAGA 59.822 37.037 0.00 0.00 31.56 2.52
2957 3538 4.142945 GCTTCTAATGTTGCAGACACTGAG 60.143 45.833 2.81 3.38 42.04 3.35
2972 3553 3.257393 CAGCAGAGTGTTCGCTTCTAAT 58.743 45.455 0.00 0.00 33.18 1.73
2974 3555 1.067565 CCAGCAGAGTGTTCGCTTCTA 60.068 52.381 0.00 0.00 33.18 2.10
3010 3591 5.076182 TGAACAAGATGGCTCATTTTGGTA 58.924 37.500 16.98 5.88 36.29 3.25
3064 3648 3.506096 CCATCCAGCTGCAGCACG 61.506 66.667 38.24 27.83 45.16 5.34
3079 3663 1.002315 GTTGGAGGTAAACGTAGCCCA 59.998 52.381 0.00 0.00 0.00 5.36
3087 3671 3.572682 CCAAGAAAGGGTTGGAGGTAAAC 59.427 47.826 0.00 0.00 46.53 2.01
3113 3697 0.324923 TCTAGCCGCCCTCCTAAACA 60.325 55.000 0.00 0.00 0.00 2.83
3126 3710 4.826556 AGGCATCGATATTTTCTCTAGCC 58.173 43.478 0.00 2.50 38.65 3.93
3179 3763 2.743928 CTGCAACCGAGTCAGGCC 60.744 66.667 0.00 0.00 33.69 5.19
3184 3768 2.527951 ATCCCAGCTGCAACCGAGTC 62.528 60.000 8.66 0.00 0.00 3.36
3223 3807 3.388345 ACGAAGAGACAGGAAAAGGTC 57.612 47.619 0.00 0.00 0.00 3.85
3238 3822 3.508762 AGCGTAGACCATGTAAACGAAG 58.491 45.455 10.20 0.00 35.66 3.79
3291 3876 3.711190 ACCCTGAGCAAAAGTCCAATTTT 59.289 39.130 0.00 0.00 32.65 1.82
3293 3878 2.893489 GACCCTGAGCAAAAGTCCAATT 59.107 45.455 0.00 0.00 0.00 2.32
3307 3892 4.019321 CCTAAGTTCTGGAAATGACCCTGA 60.019 45.833 0.00 0.00 0.00 3.86
3347 3932 0.463654 TTGGTTGAGCTCTGTTGCGT 60.464 50.000 16.19 0.00 38.13 5.24
3355 3940 4.072131 TGTATTCCAACTTGGTTGAGCTC 58.928 43.478 6.82 6.82 45.28 4.09
3376 3961 1.002366 CTTTTCATCGCGTCCTCCTG 58.998 55.000 5.77 0.00 0.00 3.86
3383 3968 1.210155 GCAAGGCTTTTCATCGCGT 59.790 52.632 5.77 0.00 0.00 6.01
3395 3980 4.660789 ATGAACAATAGATTGGCAAGGC 57.339 40.909 5.96 0.00 41.96 4.35
3403 3988 9.388506 CTCAGGACAGTTTATGAACAATAGATT 57.611 33.333 2.93 0.00 38.26 2.40
3405 3990 6.818644 GCTCAGGACAGTTTATGAACAATAGA 59.181 38.462 2.93 0.00 38.26 1.98
3468 4053 1.544246 TCCAGACGCAATTTCTCGAGA 59.456 47.619 12.08 12.08 0.00 4.04
3471 4056 1.002366 CCTCCAGACGCAATTTCTCG 58.998 55.000 0.00 0.00 0.00 4.04
3513 4098 0.248843 CTCTCTTCTGCCGGAGCTTT 59.751 55.000 5.05 0.00 40.80 3.51
3579 4164 3.755378 GGCTCAATCTGACTGTGACATTT 59.245 43.478 0.00 0.00 0.00 2.32
3585 4171 4.334759 CCTTTATGGCTCAATCTGACTGTG 59.665 45.833 0.00 0.00 0.00 3.66
3591 4177 6.327934 CAAAAGTCCTTTATGGCTCAATCTG 58.672 40.000 0.00 0.00 35.26 2.90
3593 4179 5.418840 TCCAAAAGTCCTTTATGGCTCAATC 59.581 40.000 12.35 0.00 34.13 2.67
3637 4223 9.575783 AAAAACGAAAGCTAAACTTGTGAATAA 57.424 25.926 0.00 0.00 39.09 1.40
3665 4251 7.157347 AGACATACGTAGGATAATGAGTACGA 58.843 38.462 15.09 0.00 40.53 3.43
3667 4253 9.609950 GAAAGACATACGTAGGATAATGAGTAC 57.390 37.037 15.09 0.00 0.00 2.73
3717 4303 0.457851 ATAGCACAGTCGACTCAGCC 59.542 55.000 26.51 12.64 0.00 4.85
3728 4314 3.747193 CAAACGCCACTTAATAGCACAG 58.253 45.455 0.00 0.00 0.00 3.66
3742 4328 1.402852 GGGAGAATCTTTGCAAACGCC 60.403 52.381 8.05 9.60 33.73 5.68
3747 4333 3.744940 ATCAGGGGAGAATCTTTGCAA 57.255 42.857 0.00 0.00 33.73 4.08
3767 4353 3.695830 AAGATTCAGTTAGTCGGCCAA 57.304 42.857 2.24 0.00 0.00 4.52
3772 4358 7.858052 AAATTGCAAAAGATTCAGTTAGTCG 57.142 32.000 1.71 0.00 0.00 4.18
3817 4403 3.013932 CCTTGCCTCCTCCCTGCT 61.014 66.667 0.00 0.00 0.00 4.24
3818 4404 3.011517 TCCTTGCCTCCTCCCTGC 61.012 66.667 0.00 0.00 0.00 4.85
3819 4405 1.277580 ATGTCCTTGCCTCCTCCCTG 61.278 60.000 0.00 0.00 0.00 4.45
3834 4420 5.751243 ACAACTACAACACCTCAAATGTC 57.249 39.130 0.00 0.00 0.00 3.06
3840 4426 7.502696 ACTAATGTAACAACTACAACACCTCA 58.497 34.615 0.00 0.00 43.75 3.86
3862 4448 5.468746 AGCGCAAATTTACACTGAGAAACTA 59.531 36.000 11.47 0.00 0.00 2.24
3875 4461 5.587289 ACAAGAAAGAACAGCGCAAATTTA 58.413 33.333 11.47 0.00 0.00 1.40
3880 4466 4.274705 TCATAACAAGAAAGAACAGCGCAA 59.725 37.500 11.47 0.00 0.00 4.85
3883 4469 5.597813 AGTCATAACAAGAAAGAACAGCG 57.402 39.130 0.00 0.00 0.00 5.18
3911 4497 3.379372 GCAAATCAGGAAGCAGCTCATAA 59.621 43.478 0.00 0.00 0.00 1.90
3912 4498 2.947652 GCAAATCAGGAAGCAGCTCATA 59.052 45.455 0.00 0.00 0.00 2.15
3917 4503 2.094390 TCAATGCAAATCAGGAAGCAGC 60.094 45.455 0.00 0.00 40.71 5.25
3921 4507 5.381174 TGTCTTCAATGCAAATCAGGAAG 57.619 39.130 0.00 0.00 39.47 3.46
3936 4522 4.345257 AGCTGGTCTTCTTACTTGTCTTCA 59.655 41.667 0.00 0.00 0.00 3.02
3943 4529 2.039084 CCCACAGCTGGTCTTCTTACTT 59.961 50.000 19.93 0.00 35.46 2.24
3944 4530 1.625818 CCCACAGCTGGTCTTCTTACT 59.374 52.381 19.93 0.00 35.46 2.24
3945 4531 1.348036 ACCCACAGCTGGTCTTCTTAC 59.652 52.381 19.93 0.00 35.46 2.34
3946 4532 1.729586 ACCCACAGCTGGTCTTCTTA 58.270 50.000 19.93 0.00 35.46 2.10
3969 4555 2.749076 TCATGCCACGGAAATCAAGAAG 59.251 45.455 0.00 0.00 0.00 2.85
3981 4567 3.562973 AGCTAGAAAATCATCATGCCACG 59.437 43.478 0.00 0.00 0.00 4.94
3985 4571 5.762825 TTGGAGCTAGAAAATCATCATGC 57.237 39.130 0.00 0.00 0.00 4.06
3997 4583 7.283329 AGTTCTTTTTCTTCTTTGGAGCTAGA 58.717 34.615 0.00 0.00 0.00 2.43
4017 4603 0.396811 GTATGCCGGCCCATAGTTCT 59.603 55.000 26.77 0.00 0.00 3.01
4033 4619 2.094675 GGATTGTGTGCTGGCAAGTAT 58.905 47.619 0.00 0.00 0.00 2.12
4035 4621 0.178981 AGGATTGTGTGCTGGCAAGT 60.179 50.000 0.00 0.00 0.00 3.16
4045 4631 2.040412 GTTCTCCCCTTCAGGATTGTGT 59.960 50.000 0.00 0.00 38.24 3.72
4073 4659 7.039882 GGAAAGACGTATTGTGGAATAAGAGA 58.960 38.462 0.00 0.00 30.54 3.10
4074 4660 6.816640 TGGAAAGACGTATTGTGGAATAAGAG 59.183 38.462 0.00 0.00 30.54 2.85
4087 4673 6.092259 GCAACAGAAACTATGGAAAGACGTAT 59.908 38.462 0.00 0.00 0.00 3.06
4090 4676 4.378459 GGCAACAGAAACTATGGAAAGACG 60.378 45.833 0.00 0.00 0.00 4.18
4092 4678 4.985538 AGGCAACAGAAACTATGGAAAGA 58.014 39.130 0.00 0.00 41.41 2.52
4093 4679 5.163713 GCTAGGCAACAGAAACTATGGAAAG 60.164 44.000 0.00 0.00 41.41 2.62
4094 4680 4.700213 GCTAGGCAACAGAAACTATGGAAA 59.300 41.667 0.00 0.00 41.41 3.13
4096 4682 3.519510 AGCTAGGCAACAGAAACTATGGA 59.480 43.478 0.00 0.00 41.41 3.41
4097 4683 3.878778 AGCTAGGCAACAGAAACTATGG 58.121 45.455 0.00 0.00 41.41 2.74
4098 4684 5.665459 AGTAGCTAGGCAACAGAAACTATG 58.335 41.667 0.00 0.00 41.41 2.23
4099 4685 5.941555 AGTAGCTAGGCAACAGAAACTAT 57.058 39.130 0.00 0.00 41.41 2.12
4128 4743 1.396653 ATTTCTAGCAGCATGTGGCC 58.603 50.000 0.00 0.00 46.50 5.36
4129 4744 2.223665 GGAATTTCTAGCAGCATGTGGC 60.224 50.000 0.00 0.00 45.30 5.01
4130 4745 3.018856 TGGAATTTCTAGCAGCATGTGG 58.981 45.455 0.00 0.00 39.31 4.17
4131 4746 4.579340 AGATGGAATTTCTAGCAGCATGTG 59.421 41.667 0.82 0.00 39.31 3.21
4132 4747 4.579340 CAGATGGAATTTCTAGCAGCATGT 59.421 41.667 0.82 0.00 39.31 3.21
4133 4748 4.023107 CCAGATGGAATTTCTAGCAGCATG 60.023 45.833 0.82 0.00 37.39 4.06
4134 4749 4.141321 TCCAGATGGAATTTCTAGCAGCAT 60.141 41.667 0.00 0.00 42.18 3.79
4135 4750 3.200605 TCCAGATGGAATTTCTAGCAGCA 59.799 43.478 0.00 0.00 42.18 4.41
4136 4751 3.813443 TCCAGATGGAATTTCTAGCAGC 58.187 45.455 0.00 0.00 42.18 5.25
4148 4763 1.355381 AGCAACACCATTCCAGATGGA 59.645 47.619 11.75 0.00 41.64 3.41
4149 4764 1.475280 CAGCAACACCATTCCAGATGG 59.525 52.381 3.58 3.58 44.54 3.51
4150 4765 1.135199 GCAGCAACACCATTCCAGATG 60.135 52.381 0.00 0.00 0.00 2.90
4151 4766 1.180029 GCAGCAACACCATTCCAGAT 58.820 50.000 0.00 0.00 0.00 2.90
4152 4767 0.178995 TGCAGCAACACCATTCCAGA 60.179 50.000 0.00 0.00 0.00 3.86
4153 4768 0.675083 TTGCAGCAACACCATTCCAG 59.325 50.000 2.83 0.00 0.00 3.86
4154 4769 0.675083 CTTGCAGCAACACCATTCCA 59.325 50.000 2.83 0.00 0.00 3.53
4155 4770 0.668401 GCTTGCAGCAACACCATTCC 60.668 55.000 2.83 0.00 41.89 3.01
4156 4771 0.316204 AGCTTGCAGCAACACCATTC 59.684 50.000 2.83 0.00 45.56 2.67
4157 4772 1.619654 TAGCTTGCAGCAACACCATT 58.380 45.000 2.83 0.00 45.56 3.16
4158 4773 1.619654 TTAGCTTGCAGCAACACCAT 58.380 45.000 2.83 0.00 45.56 3.55
4159 4774 1.397672 TTTAGCTTGCAGCAACACCA 58.602 45.000 2.83 0.00 45.56 4.17
4160 4775 2.127251 GTTTTAGCTTGCAGCAACACC 58.873 47.619 2.83 0.00 45.56 4.16
4161 4776 2.791004 CAGTTTTAGCTTGCAGCAACAC 59.209 45.455 2.83 0.00 45.56 3.32
4162 4777 2.426738 ACAGTTTTAGCTTGCAGCAACA 59.573 40.909 2.83 0.00 45.56 3.33
4163 4778 3.084070 ACAGTTTTAGCTTGCAGCAAC 57.916 42.857 2.83 1.60 45.56 4.17
4164 4779 5.009510 TGAATACAGTTTTAGCTTGCAGCAA 59.990 36.000 7.81 7.81 45.56 3.91
4165 4780 4.518590 TGAATACAGTTTTAGCTTGCAGCA 59.481 37.500 10.16 0.00 45.56 4.41
4166 4781 5.046910 TGAATACAGTTTTAGCTTGCAGC 57.953 39.130 0.00 0.47 42.84 5.25
4178 4793 9.739276 TTCATCAGGAAATTACTGAATACAGTT 57.261 29.630 12.45 0.00 46.89 3.16
4195 4810 9.695526 CAAATCAGTTACAAAATTTCATCAGGA 57.304 29.630 0.00 0.00 0.00 3.86
4196 4811 9.480053 ACAAATCAGTTACAAAATTTCATCAGG 57.520 29.630 0.00 0.00 0.00 3.86
4198 4813 9.474920 GGACAAATCAGTTACAAAATTTCATCA 57.525 29.630 0.00 0.00 0.00 3.07
4199 4814 9.696917 AGGACAAATCAGTTACAAAATTTCATC 57.303 29.630 0.00 0.00 0.00 2.92
4200 4815 9.696917 GAGGACAAATCAGTTACAAAATTTCAT 57.303 29.630 0.00 0.00 0.00 2.57
4201 4816 8.141268 GGAGGACAAATCAGTTACAAAATTTCA 58.859 33.333 0.00 0.00 0.00 2.69
4202 4817 8.360390 AGGAGGACAAATCAGTTACAAAATTTC 58.640 33.333 0.00 0.00 0.00 2.17
4203 4818 8.143835 CAGGAGGACAAATCAGTTACAAAATTT 58.856 33.333 0.00 0.00 0.00 1.82
4204 4819 7.287696 ACAGGAGGACAAATCAGTTACAAAATT 59.712 33.333 0.00 0.00 0.00 1.82
4205 4820 6.777580 ACAGGAGGACAAATCAGTTACAAAAT 59.222 34.615 0.00 0.00 0.00 1.82
4206 4821 6.126409 ACAGGAGGACAAATCAGTTACAAAA 58.874 36.000 0.00 0.00 0.00 2.44
4207 4822 5.690865 ACAGGAGGACAAATCAGTTACAAA 58.309 37.500 0.00 0.00 0.00 2.83
4208 4823 5.304686 ACAGGAGGACAAATCAGTTACAA 57.695 39.130 0.00 0.00 0.00 2.41
4209 4824 4.974645 ACAGGAGGACAAATCAGTTACA 57.025 40.909 0.00 0.00 0.00 2.41
4210 4825 7.923414 AATAACAGGAGGACAAATCAGTTAC 57.077 36.000 0.00 0.00 0.00 2.50
4211 4826 9.042450 TCTAATAACAGGAGGACAAATCAGTTA 57.958 33.333 0.00 0.00 0.00 2.24
4212 4827 7.918076 TCTAATAACAGGAGGACAAATCAGTT 58.082 34.615 0.00 0.00 0.00 3.16
4213 4828 7.496346 TCTAATAACAGGAGGACAAATCAGT 57.504 36.000 0.00 0.00 0.00 3.41
4214 4829 8.792830 TTTCTAATAACAGGAGGACAAATCAG 57.207 34.615 0.00 0.00 0.00 2.90
4215 4830 9.581289 TTTTTCTAATAACAGGAGGACAAATCA 57.419 29.630 0.00 0.00 0.00 2.57
4216 4831 9.841880 GTTTTTCTAATAACAGGAGGACAAATC 57.158 33.333 0.00 0.00 0.00 2.17
4217 4832 9.588096 AGTTTTTCTAATAACAGGAGGACAAAT 57.412 29.630 0.00 0.00 0.00 2.32
4218 4833 8.990163 AGTTTTTCTAATAACAGGAGGACAAA 57.010 30.769 0.00 0.00 0.00 2.83
4219 4834 8.846211 CAAGTTTTTCTAATAACAGGAGGACAA 58.154 33.333 0.00 0.00 0.00 3.18
4220 4835 7.996644 ACAAGTTTTTCTAATAACAGGAGGACA 59.003 33.333 0.00 0.00 0.00 4.02
4221 4836 8.392372 ACAAGTTTTTCTAATAACAGGAGGAC 57.608 34.615 0.00 0.00 0.00 3.85
4222 4837 7.386848 CGACAAGTTTTTCTAATAACAGGAGGA 59.613 37.037 0.00 0.00 0.00 3.71
4223 4838 7.172703 ACGACAAGTTTTTCTAATAACAGGAGG 59.827 37.037 0.00 0.00 0.00 4.30
4224 4839 8.084590 ACGACAAGTTTTTCTAATAACAGGAG 57.915 34.615 0.00 0.00 0.00 3.69
4225 4840 9.715121 ATACGACAAGTTTTTCTAATAACAGGA 57.285 29.630 0.00 0.00 0.00 3.86
4231 4846 8.863049 GGACGAATACGACAAGTTTTTCTAATA 58.137 33.333 0.00 0.00 42.66 0.98
4232 4847 7.148523 GGGACGAATACGACAAGTTTTTCTAAT 60.149 37.037 0.00 0.00 42.66 1.73
4233 4848 6.146021 GGGACGAATACGACAAGTTTTTCTAA 59.854 38.462 0.00 0.00 42.66 2.10
4234 4849 5.634859 GGGACGAATACGACAAGTTTTTCTA 59.365 40.000 0.00 0.00 42.66 2.10
4235 4850 4.450080 GGGACGAATACGACAAGTTTTTCT 59.550 41.667 0.00 0.00 42.66 2.52
4236 4851 4.211794 TGGGACGAATACGACAAGTTTTTC 59.788 41.667 0.00 0.00 42.66 2.29
4237 4852 4.024641 GTGGGACGAATACGACAAGTTTTT 60.025 41.667 0.00 0.00 42.66 1.94
4238 4853 3.495753 GTGGGACGAATACGACAAGTTTT 59.504 43.478 0.00 0.00 42.66 2.43
4239 4854 3.062042 GTGGGACGAATACGACAAGTTT 58.938 45.455 0.00 0.00 42.66 2.66
4240 4855 2.680577 GTGGGACGAATACGACAAGTT 58.319 47.619 0.00 0.00 42.66 2.66
4241 4856 1.401931 CGTGGGACGAATACGACAAGT 60.402 52.381 0.00 0.00 46.05 3.16
4242 4857 1.265568 CGTGGGACGAATACGACAAG 58.734 55.000 0.00 0.00 46.05 3.16
4243 4858 0.109179 CCGTGGGACGAATACGACAA 60.109 55.000 0.00 0.00 46.05 3.18
4244 4859 1.507630 CCGTGGGACGAATACGACA 59.492 57.895 0.00 0.00 46.05 4.35
4245 4860 1.226773 CCCGTGGGACGAATACGAC 60.227 63.158 0.00 0.00 46.05 4.34
4246 4861 1.378382 TCCCGTGGGACGAATACGA 60.378 57.895 2.72 0.00 46.05 3.43
4247 4862 1.065273 CTCCCGTGGGACGAATACG 59.935 63.158 2.72 0.00 46.05 3.06
4248 4863 1.440476 CCTCCCGTGGGACGAATAC 59.560 63.158 2.72 0.00 46.05 1.89
4249 4864 2.428925 GCCTCCCGTGGGACGAATA 61.429 63.158 2.72 0.00 46.05 1.75
4250 4865 3.782443 GCCTCCCGTGGGACGAAT 61.782 66.667 2.72 0.00 46.05 3.34
4256 4871 2.260088 TTAATTCCGCCTCCCGTGGG 62.260 60.000 0.00 0.00 42.96 4.61
4257 4872 0.179029 ATTAATTCCGCCTCCCGTGG 60.179 55.000 0.00 0.00 44.24 4.94
4258 4873 1.333619 CAATTAATTCCGCCTCCCGTG 59.666 52.381 0.00 0.00 34.38 4.94
4259 4874 1.064979 ACAATTAATTCCGCCTCCCGT 60.065 47.619 0.00 0.00 34.38 5.28
4260 4875 1.675552 ACAATTAATTCCGCCTCCCG 58.324 50.000 0.00 0.00 0.00 5.14
4261 4876 2.100749 CCAACAATTAATTCCGCCTCCC 59.899 50.000 0.00 0.00 0.00 4.30
4262 4877 2.100749 CCCAACAATTAATTCCGCCTCC 59.899 50.000 0.00 0.00 0.00 4.30
4263 4878 3.020984 TCCCAACAATTAATTCCGCCTC 58.979 45.455 0.00 0.00 0.00 4.70
4264 4879 3.094484 TCCCAACAATTAATTCCGCCT 57.906 42.857 0.00 0.00 0.00 5.52
4265 4880 3.878160 TTCCCAACAATTAATTCCGCC 57.122 42.857 0.00 0.00 0.00 6.13
4266 4881 3.610677 CGTTTCCCAACAATTAATTCCGC 59.389 43.478 0.00 0.00 32.54 5.54
4267 4882 4.082679 TCCGTTTCCCAACAATTAATTCCG 60.083 41.667 0.00 0.00 32.54 4.30
4268 4883 5.394224 TCCGTTTCCCAACAATTAATTCC 57.606 39.130 0.00 0.00 32.54 3.01
4269 4884 4.862574 GCTCCGTTTCCCAACAATTAATTC 59.137 41.667 0.00 0.00 32.54 2.17
4270 4885 4.282195 TGCTCCGTTTCCCAACAATTAATT 59.718 37.500 0.00 0.00 32.54 1.40
4271 4886 3.829601 TGCTCCGTTTCCCAACAATTAAT 59.170 39.130 0.00 0.00 32.54 1.40
4272 4887 3.223435 TGCTCCGTTTCCCAACAATTAA 58.777 40.909 0.00 0.00 32.54 1.40
4273 4888 2.865079 TGCTCCGTTTCCCAACAATTA 58.135 42.857 0.00 0.00 32.54 1.40
4274 4889 1.698506 TGCTCCGTTTCCCAACAATT 58.301 45.000 0.00 0.00 32.54 2.32
4275 4890 1.923356 ATGCTCCGTTTCCCAACAAT 58.077 45.000 0.00 0.00 32.54 2.71
4276 4891 3.430473 ATGCTCCGTTTCCCAACAA 57.570 47.368 0.00 0.00 32.54 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.