Multiple sequence alignment - TraesCS1B01G020400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G020400 chr1B 100.000 4736 0 0 1 4736 9559563 9554828 0.000000e+00 8746
1 TraesCS1B01G020400 chr1B 85.437 3145 423 18 896 4019 9989491 9992621 0.000000e+00 3238
2 TraesCS1B01G020400 chr1B 84.779 2260 314 19 1502 3736 15877084 15879338 0.000000e+00 2241
3 TraesCS1B01G020400 chr1D 94.577 3264 160 6 897 4150 7606148 7609404 0.000000e+00 5031
4 TraesCS1B01G020400 chr1D 85.119 3145 417 26 899 4019 7280456 7277339 0.000000e+00 3168
5 TraesCS1B01G020400 chr1D 83.536 2800 427 22 964 3737 10663400 10660609 0.000000e+00 2586
6 TraesCS1B01G020400 chr1D 85.284 2093 254 28 1945 4019 7821408 7823464 0.000000e+00 2109
7 TraesCS1B01G020400 chr1D 96.305 893 31 1 1 893 255429031 255429921 0.000000e+00 1465
8 TraesCS1B01G020400 chr1D 83.259 448 71 2 900 1344 7820961 7821407 4.410000e-110 409
9 TraesCS1B01G020400 chr1D 85.616 292 36 3 4040 4325 7070037 7069746 7.700000e-78 302
10 TraesCS1B01G020400 chr1A 87.147 3649 397 25 899 4494 8718527 8714898 0.000000e+00 4074
11 TraesCS1B01G020400 chr1A 83.750 2800 422 19 964 3736 12503860 12506653 0.000000e+00 2619
12 TraesCS1B01G020400 chr1A 83.643 2800 424 23 964 3737 12306460 12303669 0.000000e+00 2603
13 TraesCS1B01G020400 chr1A 82.039 2795 476 16 964 3736 12210635 12207845 0.000000e+00 2357
14 TraesCS1B01G020400 chr1A 86.396 419 56 1 1243 1660 9251945 9252363 1.550000e-124 457
15 TraesCS1B01G020400 chr1A 93.103 116 7 1 4379 4494 8636128 8636014 8.150000e-38 169
16 TraesCS1B01G020400 chr3B 96.980 894 25 1 3 896 792321056 792320165 0.000000e+00 1500
17 TraesCS1B01G020400 chr3B 97.082 891 24 1 3 893 793418891 793419779 0.000000e+00 1500
18 TraesCS1B01G020400 chr3B 96.756 894 27 1 3 896 792407870 792406979 0.000000e+00 1489
19 TraesCS1B01G020400 chrUn 96.970 891 25 1 3 893 155055236 155056124 0.000000e+00 1495
20 TraesCS1B01G020400 chrUn 96.857 891 26 1 3 893 154972808 154973696 0.000000e+00 1489
21 TraesCS1B01G020400 chrUn 96.644 894 28 2 3 896 242536519 242535628 0.000000e+00 1483
22 TraesCS1B01G020400 chr2B 96.429 896 30 2 1 896 245266812 245265919 0.000000e+00 1476
23 TraesCS1B01G020400 chr5D 96.317 896 30 2 1 896 525185456 525184564 0.000000e+00 1469


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G020400 chr1B 9554828 9559563 4735 True 8746 8746 100.0000 1 4736 1 chr1B.!!$R1 4735
1 TraesCS1B01G020400 chr1B 9989491 9992621 3130 False 3238 3238 85.4370 896 4019 1 chr1B.!!$F1 3123
2 TraesCS1B01G020400 chr1B 15877084 15879338 2254 False 2241 2241 84.7790 1502 3736 1 chr1B.!!$F2 2234
3 TraesCS1B01G020400 chr1D 7606148 7609404 3256 False 5031 5031 94.5770 897 4150 1 chr1D.!!$F1 3253
4 TraesCS1B01G020400 chr1D 7277339 7280456 3117 True 3168 3168 85.1190 899 4019 1 chr1D.!!$R2 3120
5 TraesCS1B01G020400 chr1D 10660609 10663400 2791 True 2586 2586 83.5360 964 3737 1 chr1D.!!$R3 2773
6 TraesCS1B01G020400 chr1D 255429031 255429921 890 False 1465 1465 96.3050 1 893 1 chr1D.!!$F2 892
7 TraesCS1B01G020400 chr1D 7820961 7823464 2503 False 1259 2109 84.2715 900 4019 2 chr1D.!!$F3 3119
8 TraesCS1B01G020400 chr1A 8714898 8718527 3629 True 4074 4074 87.1470 899 4494 1 chr1A.!!$R2 3595
9 TraesCS1B01G020400 chr1A 12503860 12506653 2793 False 2619 2619 83.7500 964 3736 1 chr1A.!!$F2 2772
10 TraesCS1B01G020400 chr1A 12303669 12306460 2791 True 2603 2603 83.6430 964 3737 1 chr1A.!!$R4 2773
11 TraesCS1B01G020400 chr1A 12207845 12210635 2790 True 2357 2357 82.0390 964 3736 1 chr1A.!!$R3 2772
12 TraesCS1B01G020400 chr3B 792320165 792321056 891 True 1500 1500 96.9800 3 896 1 chr3B.!!$R1 893
13 TraesCS1B01G020400 chr3B 793418891 793419779 888 False 1500 1500 97.0820 3 893 1 chr3B.!!$F1 890
14 TraesCS1B01G020400 chr3B 792406979 792407870 891 True 1489 1489 96.7560 3 896 1 chr3B.!!$R2 893
15 TraesCS1B01G020400 chrUn 155055236 155056124 888 False 1495 1495 96.9700 3 893 1 chrUn.!!$F2 890
16 TraesCS1B01G020400 chrUn 154972808 154973696 888 False 1489 1489 96.8570 3 893 1 chrUn.!!$F1 890
17 TraesCS1B01G020400 chrUn 242535628 242536519 891 True 1483 1483 96.6440 3 896 1 chrUn.!!$R1 893
18 TraesCS1B01G020400 chr2B 245265919 245266812 893 True 1476 1476 96.4290 1 896 1 chr2B.!!$R1 895
19 TraesCS1B01G020400 chr5D 525184564 525185456 892 True 1469 1469 96.3170 1 896 1 chr5D.!!$R1 895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 468 1.125633 GGATACCGCCTTAGAACCCA 58.874 55.000 0.00 0.0 0.00 4.51 F
583 584 1.379710 TCATGAATGCCCAACCCGG 60.380 57.895 0.00 0.0 0.00 5.73 F
1439 1445 1.898574 GGGACACAGTGCAACCCAG 60.899 63.158 19.94 0.0 40.20 4.45 F
2622 2642 1.156736 CGACATCAAGTGGTTGGACC 58.843 55.000 0.00 0.0 39.22 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2295 2315 1.133823 TCTTCAGGGAACAAGCTGCAA 60.134 47.619 1.02 0.00 0.00 4.08 R
2533 2553 0.037447 GCAGAGCCAAACCTCTCCTT 59.963 55.000 0.00 0.00 40.11 3.36 R
2667 2699 0.106708 AGGACGAAGCTGTTGCAAGA 59.893 50.000 0.00 0.00 42.74 3.02 R
4496 4569 0.039617 CCGCTCACGAAAATTGGCAA 60.040 50.000 0.68 0.68 43.93 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.872483 GGTATCTTCATCTTCCAGATCTTCTTC 59.128 40.741 0.00 0.00 31.32 2.87
367 368 4.080582 TCCGAGCCATCCTTAATTGAGAAA 60.081 41.667 0.00 0.00 0.00 2.52
409 410 3.410631 TTCTTCGTTGCCATTAGTCCA 57.589 42.857 0.00 0.00 0.00 4.02
426 427 2.893489 GTCCAGCCCAAAAATGAGAGTT 59.107 45.455 0.00 0.00 0.00 3.01
445 446 4.880164 AGTTCCCAGGCTTCTAGTATACA 58.120 43.478 5.50 0.00 0.00 2.29
467 468 1.125633 GGATACCGCCTTAGAACCCA 58.874 55.000 0.00 0.00 0.00 4.51
519 520 3.140325 ACACCATCTTCCGTCAACAAT 57.860 42.857 0.00 0.00 0.00 2.71
583 584 1.379710 TCATGAATGCCCAACCCGG 60.380 57.895 0.00 0.00 0.00 5.73
667 668 4.371624 TCTCCTTGCCAAAAGAATCTCA 57.628 40.909 0.00 0.00 0.00 3.27
857 858 5.221481 TGTGTTTCCATTCAGCATTTGTGAT 60.221 36.000 0.00 0.00 0.00 3.06
893 894 4.411256 TCGGTATCCCCAAATAAGTGAC 57.589 45.455 0.00 0.00 0.00 3.67
912 913 5.069914 AGTGACCGTGCTATTACAATCCATA 59.930 40.000 0.00 0.00 0.00 2.74
918 919 6.595326 CCGTGCTATTACAATCCATACATCAT 59.405 38.462 0.00 0.00 0.00 2.45
919 920 7.413328 CCGTGCTATTACAATCCATACATCATG 60.413 40.741 0.00 0.00 0.00 3.07
962 965 5.300034 TCCCTGCTTCTTGTATTATGCATTG 59.700 40.000 3.54 0.00 0.00 2.82
1094 1100 2.622436 ACAGAAGCTATCGAAGGTTGC 58.378 47.619 14.00 0.66 45.83 4.17
1124 1130 6.918892 AAAGGAATTGCCAACAAAAGTTAC 57.081 33.333 0.00 0.00 39.77 2.50
1263 1269 6.882140 ACCGTGTTGAGGATGTAATTGATAAA 59.118 34.615 0.00 0.00 0.00 1.40
1329 1335 3.432378 ACGGTACATCTTCAGAGGTTCT 58.568 45.455 0.00 0.00 39.91 3.01
1351 1357 6.746120 TCTCGCCATATAAAGGTCTTTAGTC 58.254 40.000 8.80 0.00 38.30 2.59
1372 1378 5.771666 AGTCAAATTGCTGAGGAAATTGAGA 59.228 36.000 15.97 0.00 31.49 3.27
1439 1445 1.898574 GGGACACAGTGCAACCCAG 60.899 63.158 19.94 0.00 40.20 4.45
1443 1449 1.956477 GACACAGTGCAACCCAGAAAT 59.044 47.619 0.00 0.00 37.80 2.17
1543 1549 5.508657 GGGATTGATGAAAATAGGAGCAAGC 60.509 44.000 0.00 0.00 0.00 4.01
1574 1580 4.264253 TGGTTGAGCACTGATGATAAAGG 58.736 43.478 0.00 0.00 0.00 3.11
1927 1947 2.135933 GTCTCCAAGGAAGTCGTGTTG 58.864 52.381 0.00 0.00 0.00 3.33
2067 2087 2.203280 CCAAACCACGAGTGCCCA 60.203 61.111 0.00 0.00 0.00 5.36
2115 2135 5.473162 TGATGTTGTTAAGAAGTGTCATGGG 59.527 40.000 0.00 0.00 0.00 4.00
2154 2174 2.191400 TCTTCTGGCAGCCTATTGTCT 58.809 47.619 14.15 0.00 0.00 3.41
2194 2214 7.328005 CAGAGTATGTATGGAATCAGATGTTCG 59.672 40.741 0.00 0.00 0.00 3.95
2277 2297 2.619849 CCATGACTTGCCAGGTGATCTT 60.620 50.000 0.00 0.00 0.00 2.40
2390 2410 4.216257 CGTGATGAGGAAAGGAAACAACAT 59.784 41.667 0.00 0.00 0.00 2.71
2533 2553 1.654220 GCTCTTGCTGTGGCGAAAA 59.346 52.632 0.00 0.00 42.25 2.29
2575 2595 6.127507 TGCAAATGATTCGGGTGAAATGATTA 60.128 34.615 0.00 0.00 37.71 1.75
2583 2603 3.631686 CGGGTGAAATGATTAGCATGGAA 59.368 43.478 0.00 0.00 37.28 3.53
2601 2621 6.619874 GCATGGAAAAAGAAGTTCGTCGATTA 60.620 38.462 0.00 0.00 0.00 1.75
2622 2642 1.156736 CGACATCAAGTGGTTGGACC 58.843 55.000 0.00 0.00 39.22 4.46
2652 2684 2.467880 AGAGTGGAATTTCCTCGGCTA 58.532 47.619 16.25 0.00 37.46 3.93
2667 2699 1.337071 CGGCTACGTACCATCATGTCT 59.663 52.381 12.62 0.00 34.81 3.41
2721 2753 5.802821 GCTTTCCTCTGTTTTCTCTGGATCT 60.803 44.000 0.00 0.00 0.00 2.75
2763 2795 4.904241 AGCTTCAAGACTCTGCAATAACT 58.096 39.130 0.00 0.00 0.00 2.24
2796 2828 2.985896 TCCATCGGGAATCTGTTCAAC 58.014 47.619 0.00 0.00 41.32 3.18
2811 2843 3.071479 GTTCAACCTTCGCTACATTGGA 58.929 45.455 0.00 0.00 0.00 3.53
2862 2894 5.335191 GCCAGACACCATAGAAAAACTCTTG 60.335 44.000 0.00 0.00 35.41 3.02
2925 2957 3.161866 GCTCCCACCAGGAATTGTAAAA 58.838 45.455 0.00 0.00 46.94 1.52
2949 2981 1.604278 GAGAAGCTGCGACACCTTTTT 59.396 47.619 0.00 0.00 0.00 1.94
3048 3080 5.491635 ACTTTCAAGAACTGCAAACTCTC 57.508 39.130 0.00 0.00 0.00 3.20
3073 3105 1.236616 CGTCCATGCCAGCAAAGACA 61.237 55.000 19.33 0.00 34.03 3.41
3079 3111 0.178995 TGCCAGCAAAGACATGTCCA 60.179 50.000 22.21 7.60 0.00 4.02
3126 3158 5.543507 TGCAAACTGTTTGGGTTGATAAT 57.456 34.783 28.61 0.00 40.94 1.28
3215 3247 6.088016 ACTTCTCTCTGCATATGATGAGAC 57.912 41.667 18.20 0.00 32.86 3.36
3231 3263 6.055588 TGATGAGACCGAGAAACTTTCTTTT 58.944 36.000 5.49 0.00 40.87 2.27
3285 3317 4.158025 CACAGACTAATCGTTAGAGGTGGT 59.842 45.833 10.46 0.00 36.73 4.16
3782 3814 6.656270 CCCTTGGTTATTAAGAAACGTAAGGT 59.344 38.462 21.28 0.00 46.39 3.50
3828 3860 8.928733 GTGCATGCATTTAATTATTTATCAGGG 58.071 33.333 25.64 0.00 0.00 4.45
3979 4029 7.715265 TGAGAGTGAGTTAGTTTGTTTCATC 57.285 36.000 0.00 0.00 0.00 2.92
3982 4032 9.424319 GAGAGTGAGTTAGTTTGTTTCATCATA 57.576 33.333 0.00 0.00 0.00 2.15
4053 4117 8.599624 ATTGTCTGGGTAAATTCTTTCATGAT 57.400 30.769 0.00 0.00 0.00 2.45
4115 4181 2.159043 TCTGCCGCTTTTCTCTCTATGG 60.159 50.000 0.00 0.00 0.00 2.74
4135 4201 1.906105 TTCCACCACCAGGGCGATAC 61.906 60.000 0.00 0.00 42.05 2.24
4209 4275 3.887716 GTCCCATGATGCTTTGCTCTTAT 59.112 43.478 0.00 0.00 0.00 1.73
4251 4320 4.343526 ACCCAACAACAATATGACTGCAAA 59.656 37.500 0.00 0.00 0.00 3.68
4257 4326 5.764686 ACAACAATATGACTGCAAACTCTGA 59.235 36.000 0.00 0.00 0.00 3.27
4264 4333 5.235305 TGACTGCAAACTCTGAAACTTTC 57.765 39.130 0.00 0.00 0.00 2.62
4275 4348 6.381801 ACTCTGAAACTTTCTGTTGTTTGTG 58.618 36.000 3.22 0.00 39.13 3.33
4282 4355 2.276472 TCTGTTGTTTGTGCTTGTGC 57.724 45.000 0.00 0.00 40.20 4.57
4292 4365 3.157727 TGCTTGTGCATCAGCGTAT 57.842 47.368 13.65 0.00 45.31 3.06
4303 4376 1.277326 TCAGCGTATGACGAATGTGC 58.723 50.000 2.65 0.00 46.05 4.57
4305 4378 1.594397 CAGCGTATGACGAATGTGCAT 59.406 47.619 2.65 0.00 46.05 3.96
4307 4380 2.794910 AGCGTATGACGAATGTGCATAC 59.205 45.455 2.65 0.00 46.05 2.39
4330 4403 4.153117 CGAGAAGTGTCAAAGGAAGGAATG 59.847 45.833 0.00 0.00 0.00 2.67
4332 4405 5.312079 AGAAGTGTCAAAGGAAGGAATGAG 58.688 41.667 0.00 0.00 0.00 2.90
4335 4408 2.095461 GTCAAAGGAAGGAATGAGGCC 58.905 52.381 0.00 0.00 0.00 5.19
4339 4412 1.673767 AGGAAGGAATGAGGCCTGAA 58.326 50.000 12.00 0.00 35.50 3.02
4364 4437 2.863809 CAAAGGCTCACAGTTAAGGGT 58.136 47.619 0.00 0.00 0.00 4.34
4386 4459 0.539051 CTGGGGAGAAGGTGCTACTG 59.461 60.000 0.00 0.00 0.00 2.74
4388 4461 1.222113 GGGAGAAGGTGCTACTGCC 59.778 63.158 0.00 0.00 38.71 4.85
4403 4476 0.601046 CTGCCGACACTGCTCTTTCA 60.601 55.000 0.00 0.00 0.00 2.69
4408 4481 2.807967 CCGACACTGCTCTTTCAAATGA 59.192 45.455 0.00 0.00 0.00 2.57
4422 4495 9.234384 CTCTTTCAAATGATGATATTTCTGTGC 57.766 33.333 0.00 0.00 38.03 4.57
4424 4497 9.529325 CTTTCAAATGATGATATTTCTGTGCAT 57.471 29.630 0.00 0.00 38.03 3.96
4428 4501 9.908152 CAAATGATGATATTTCTGTGCATATGT 57.092 29.630 4.29 0.00 0.00 2.29
4432 4505 8.724229 TGATGATATTTCTGTGCATATGTTAGC 58.276 33.333 4.29 0.00 0.00 3.09
4433 4506 8.859236 ATGATATTTCTGTGCATATGTTAGCT 57.141 30.769 4.29 0.00 0.00 3.32
4434 4507 8.681486 TGATATTTCTGTGCATATGTTAGCTT 57.319 30.769 4.29 0.00 0.00 3.74
4435 4508 8.562052 TGATATTTCTGTGCATATGTTAGCTTG 58.438 33.333 4.29 0.00 0.00 4.01
4436 4509 6.764308 ATTTCTGTGCATATGTTAGCTTGT 57.236 33.333 4.29 0.00 0.00 3.16
4437 4510 5.550232 TTCTGTGCATATGTTAGCTTGTG 57.450 39.130 4.29 0.00 0.00 3.33
4438 4511 4.831107 TCTGTGCATATGTTAGCTTGTGA 58.169 39.130 4.29 0.00 0.00 3.58
4439 4512 5.430886 TCTGTGCATATGTTAGCTTGTGAT 58.569 37.500 4.29 0.00 0.00 3.06
4457 4530 3.435671 GTGATTACCCTTTCTCCGTGTTG 59.564 47.826 0.00 0.00 0.00 3.33
4467 4540 4.875544 TTCTCCGTGTTGAGTTTTGAAG 57.124 40.909 0.00 0.00 33.93 3.02
4469 4542 4.258543 TCTCCGTGTTGAGTTTTGAAGTT 58.741 39.130 0.00 0.00 33.93 2.66
4471 4544 4.728534 TCCGTGTTGAGTTTTGAAGTTTG 58.271 39.130 0.00 0.00 0.00 2.93
4494 4567 8.434589 TTGATAAAGGGGAAGAAAATGAATGT 57.565 30.769 0.00 0.00 0.00 2.71
4495 4568 8.434589 TGATAAAGGGGAAGAAAATGAATGTT 57.565 30.769 0.00 0.00 0.00 2.71
4496 4569 8.879227 TGATAAAGGGGAAGAAAATGAATGTTT 58.121 29.630 0.00 0.00 0.00 2.83
4497 4570 9.725019 GATAAAGGGGAAGAAAATGAATGTTTT 57.275 29.630 0.00 0.00 34.19 2.43
4498 4571 7.806409 AAAGGGGAAGAAAATGAATGTTTTG 57.194 32.000 0.00 0.00 31.80 2.44
4499 4572 5.308014 AGGGGAAGAAAATGAATGTTTTGC 58.692 37.500 0.00 0.00 31.80 3.68
4500 4573 4.455533 GGGGAAGAAAATGAATGTTTTGCC 59.544 41.667 0.00 0.00 31.80 4.52
4501 4574 5.062528 GGGAAGAAAATGAATGTTTTGCCA 58.937 37.500 0.00 0.00 31.80 4.92
4502 4575 5.530543 GGGAAGAAAATGAATGTTTTGCCAA 59.469 36.000 0.00 0.00 31.80 4.52
4503 4576 6.207221 GGGAAGAAAATGAATGTTTTGCCAAT 59.793 34.615 0.00 0.00 31.80 3.16
4504 4577 7.255555 GGGAAGAAAATGAATGTTTTGCCAATT 60.256 33.333 0.00 0.00 31.80 2.32
4505 4578 8.136800 GGAAGAAAATGAATGTTTTGCCAATTT 58.863 29.630 0.00 0.00 31.80 1.82
4506 4579 9.518906 GAAGAAAATGAATGTTTTGCCAATTTT 57.481 25.926 0.00 0.00 31.80 1.82
4507 4580 9.518906 AAGAAAATGAATGTTTTGCCAATTTTC 57.481 25.926 9.00 9.00 36.38 2.29
4508 4581 7.856894 AGAAAATGAATGTTTTGCCAATTTTCG 59.143 29.630 10.56 0.00 39.23 3.46
4509 4582 6.616774 AATGAATGTTTTGCCAATTTTCGT 57.383 29.167 0.00 0.00 0.00 3.85
4510 4583 5.401033 TGAATGTTTTGCCAATTTTCGTG 57.599 34.783 0.00 0.00 0.00 4.35
4511 4584 5.111989 TGAATGTTTTGCCAATTTTCGTGA 58.888 33.333 0.00 0.00 0.00 4.35
4512 4585 5.233902 TGAATGTTTTGCCAATTTTCGTGAG 59.766 36.000 0.00 0.00 0.00 3.51
4513 4586 2.863137 TGTTTTGCCAATTTTCGTGAGC 59.137 40.909 0.00 0.00 0.00 4.26
4514 4587 1.764851 TTTGCCAATTTTCGTGAGCG 58.235 45.000 0.00 0.00 39.92 5.03
4515 4588 0.039617 TTGCCAATTTTCGTGAGCGG 60.040 50.000 0.00 0.00 38.89 5.52
4516 4589 1.801512 GCCAATTTTCGTGAGCGGC 60.802 57.895 0.00 0.00 38.89 6.53
4517 4590 1.578926 CCAATTTTCGTGAGCGGCA 59.421 52.632 1.45 0.00 38.89 5.69
4518 4591 0.729140 CCAATTTTCGTGAGCGGCAC 60.729 55.000 1.45 0.00 44.21 5.01
4519 4592 0.238289 CAATTTTCGTGAGCGGCACT 59.762 50.000 1.45 0.00 45.49 4.40
4520 4593 0.238289 AATTTTCGTGAGCGGCACTG 59.762 50.000 1.45 5.20 45.49 3.66
4521 4594 0.602638 ATTTTCGTGAGCGGCACTGA 60.603 50.000 1.45 7.04 45.49 3.41
4522 4595 0.602638 TTTTCGTGAGCGGCACTGAT 60.603 50.000 1.45 0.00 45.49 2.90
4523 4596 0.245266 TTTCGTGAGCGGCACTGATA 59.755 50.000 1.45 3.64 45.49 2.15
4524 4597 0.179137 TTCGTGAGCGGCACTGATAG 60.179 55.000 1.45 0.00 45.49 2.08
4525 4598 1.029947 TCGTGAGCGGCACTGATAGA 61.030 55.000 1.45 0.00 45.49 1.98
4526 4599 0.593518 CGTGAGCGGCACTGATAGAG 60.594 60.000 1.45 0.00 45.49 2.43
4527 4600 0.741326 GTGAGCGGCACTGATAGAGA 59.259 55.000 1.45 0.00 44.27 3.10
4528 4601 0.741326 TGAGCGGCACTGATAGAGAC 59.259 55.000 1.45 0.00 0.00 3.36
4529 4602 0.741326 GAGCGGCACTGATAGAGACA 59.259 55.000 1.45 0.00 0.00 3.41
4530 4603 0.457851 AGCGGCACTGATAGAGACAC 59.542 55.000 1.45 0.00 0.00 3.67
4531 4604 0.173481 GCGGCACTGATAGAGACACA 59.827 55.000 0.00 0.00 0.00 3.72
4532 4605 1.800655 GCGGCACTGATAGAGACACAG 60.801 57.143 0.00 0.00 37.62 3.66
4533 4606 1.202348 CGGCACTGATAGAGACACAGG 60.202 57.143 0.00 0.00 36.17 4.00
4534 4607 1.472376 GGCACTGATAGAGACACAGGC 60.472 57.143 0.00 0.00 36.17 4.85
4535 4608 1.205655 GCACTGATAGAGACACAGGCA 59.794 52.381 0.00 0.00 36.17 4.75
4536 4609 2.738000 GCACTGATAGAGACACAGGCAG 60.738 54.545 0.00 0.00 36.17 4.85
4537 4610 1.480137 ACTGATAGAGACACAGGCAGC 59.520 52.381 0.00 0.00 36.17 5.25
4538 4611 1.755959 CTGATAGAGACACAGGCAGCT 59.244 52.381 0.00 0.00 0.00 4.24
4539 4612 2.168106 CTGATAGAGACACAGGCAGCTT 59.832 50.000 0.00 0.00 0.00 3.74
4540 4613 2.167281 TGATAGAGACACAGGCAGCTTC 59.833 50.000 0.00 0.00 0.00 3.86
4541 4614 1.632589 TAGAGACACAGGCAGCTTCA 58.367 50.000 0.00 0.00 0.00 3.02
4542 4615 0.321021 AGAGACACAGGCAGCTTCAG 59.679 55.000 0.00 0.00 0.00 3.02
4543 4616 0.319728 GAGACACAGGCAGCTTCAGA 59.680 55.000 0.00 0.00 0.00 3.27
4544 4617 0.761187 AGACACAGGCAGCTTCAGAA 59.239 50.000 0.00 0.00 0.00 3.02
4545 4618 1.155042 GACACAGGCAGCTTCAGAAG 58.845 55.000 5.72 5.72 0.00 2.85
4569 4642 4.928601 CATCATTTATGGGTCAAGCTGTG 58.071 43.478 0.00 0.00 31.38 3.66
4570 4643 3.355378 TCATTTATGGGTCAAGCTGTGG 58.645 45.455 0.00 0.00 0.00 4.17
4571 4644 2.969821 TTTATGGGTCAAGCTGTGGT 57.030 45.000 0.00 0.00 0.00 4.16
4572 4645 2.198827 TTATGGGTCAAGCTGTGGTG 57.801 50.000 0.00 0.00 0.00 4.17
4573 4646 1.064003 TATGGGTCAAGCTGTGGTGT 58.936 50.000 0.00 0.00 0.00 4.16
4574 4647 0.538057 ATGGGTCAAGCTGTGGTGTG 60.538 55.000 0.00 0.00 0.00 3.82
4575 4648 1.898574 GGGTCAAGCTGTGGTGTGG 60.899 63.158 0.00 0.00 0.00 4.17
4576 4649 1.152963 GGTCAAGCTGTGGTGTGGT 60.153 57.895 0.00 0.00 0.00 4.16
4577 4650 1.447317 GGTCAAGCTGTGGTGTGGTG 61.447 60.000 0.00 0.00 0.00 4.17
4578 4651 0.748005 GTCAAGCTGTGGTGTGGTGT 60.748 55.000 0.00 0.00 0.00 4.16
4579 4652 0.463654 TCAAGCTGTGGTGTGGTGTC 60.464 55.000 0.00 0.00 0.00 3.67
4580 4653 0.464373 CAAGCTGTGGTGTGGTGTCT 60.464 55.000 0.00 0.00 0.00 3.41
4581 4654 0.179045 AAGCTGTGGTGTGGTGTCTC 60.179 55.000 0.00 0.00 0.00 3.36
4582 4655 1.146041 GCTGTGGTGTGGTGTCTCA 59.854 57.895 0.00 0.00 0.00 3.27
4583 4656 0.250467 GCTGTGGTGTGGTGTCTCAT 60.250 55.000 0.00 0.00 0.00 2.90
4584 4657 1.800805 CTGTGGTGTGGTGTCTCATC 58.199 55.000 0.00 0.00 0.00 2.92
4585 4658 1.345741 CTGTGGTGTGGTGTCTCATCT 59.654 52.381 0.00 0.00 0.00 2.90
4586 4659 2.562738 CTGTGGTGTGGTGTCTCATCTA 59.437 50.000 0.00 0.00 0.00 1.98
4587 4660 3.173151 TGTGGTGTGGTGTCTCATCTAT 58.827 45.455 0.00 0.00 0.00 1.98
4588 4661 3.055891 TGTGGTGTGGTGTCTCATCTATG 60.056 47.826 0.00 0.00 0.00 2.23
4589 4662 3.195610 GTGGTGTGGTGTCTCATCTATGA 59.804 47.826 0.00 0.00 35.16 2.15
4590 4663 3.837731 TGGTGTGGTGTCTCATCTATGAA 59.162 43.478 0.00 0.00 36.18 2.57
4591 4664 4.081476 TGGTGTGGTGTCTCATCTATGAAG 60.081 45.833 0.00 0.00 36.18 3.02
4592 4665 4.160439 GGTGTGGTGTCTCATCTATGAAGA 59.840 45.833 0.00 0.00 36.18 2.87
4593 4666 5.163364 GGTGTGGTGTCTCATCTATGAAGAT 60.163 44.000 0.00 0.00 43.54 2.40
4594 4667 5.982516 GTGTGGTGTCTCATCTATGAAGATC 59.017 44.000 0.00 0.00 40.65 2.75
4595 4668 5.218885 GTGGTGTCTCATCTATGAAGATCG 58.781 45.833 0.00 0.00 40.65 3.69
4596 4669 4.889995 TGGTGTCTCATCTATGAAGATCGT 59.110 41.667 0.00 0.00 40.65 3.73
4597 4670 6.017026 GTGGTGTCTCATCTATGAAGATCGTA 60.017 42.308 0.00 0.00 40.65 3.43
4598 4671 6.546034 TGGTGTCTCATCTATGAAGATCGTAA 59.454 38.462 0.00 0.00 40.65 3.18
4599 4672 7.231519 TGGTGTCTCATCTATGAAGATCGTAAT 59.768 37.037 0.00 0.00 40.65 1.89
4600 4673 8.085296 GGTGTCTCATCTATGAAGATCGTAATT 58.915 37.037 0.00 0.00 40.65 1.40
4611 4684 8.893219 ATGAAGATCGTAATTATGTGATGTGT 57.107 30.769 4.63 0.00 0.00 3.72
4612 4685 8.130307 TGAAGATCGTAATTATGTGATGTGTG 57.870 34.615 4.63 0.00 0.00 3.82
4613 4686 7.763985 TGAAGATCGTAATTATGTGATGTGTGT 59.236 33.333 4.63 0.00 0.00 3.72
4614 4687 7.468922 AGATCGTAATTATGTGATGTGTGTG 57.531 36.000 4.63 0.00 0.00 3.82
4615 4688 7.041721 AGATCGTAATTATGTGATGTGTGTGT 58.958 34.615 4.63 0.00 0.00 3.72
4616 4689 7.549134 AGATCGTAATTATGTGATGTGTGTGTT 59.451 33.333 4.63 0.00 0.00 3.32
4617 4690 7.428282 TCGTAATTATGTGATGTGTGTGTTT 57.572 32.000 4.63 0.00 0.00 2.83
4618 4691 7.294473 TCGTAATTATGTGATGTGTGTGTTTG 58.706 34.615 4.63 0.00 0.00 2.93
4619 4692 7.041712 TCGTAATTATGTGATGTGTGTGTTTGT 60.042 33.333 4.63 0.00 0.00 2.83
4620 4693 7.059374 CGTAATTATGTGATGTGTGTGTTTGTG 59.941 37.037 0.00 0.00 0.00 3.33
4621 4694 3.713858 ATGTGATGTGTGTGTTTGTGG 57.286 42.857 0.00 0.00 0.00 4.17
4622 4695 1.133982 TGTGATGTGTGTGTTTGTGGC 59.866 47.619 0.00 0.00 0.00 5.01
4623 4696 1.133982 GTGATGTGTGTGTTTGTGGCA 59.866 47.619 0.00 0.00 0.00 4.92
4624 4697 1.404748 TGATGTGTGTGTTTGTGGCAG 59.595 47.619 0.00 0.00 0.00 4.85
4625 4698 1.675483 GATGTGTGTGTTTGTGGCAGA 59.325 47.619 0.00 0.00 0.00 4.26
4626 4699 1.539157 TGTGTGTGTTTGTGGCAGAA 58.461 45.000 0.00 0.00 0.00 3.02
4627 4700 1.889170 TGTGTGTGTTTGTGGCAGAAA 59.111 42.857 5.61 5.61 0.00 2.52
4628 4701 2.297315 TGTGTGTGTTTGTGGCAGAAAA 59.703 40.909 11.72 1.13 0.00 2.29
4629 4702 3.056250 TGTGTGTGTTTGTGGCAGAAAAT 60.056 39.130 11.72 0.00 0.00 1.82
4630 4703 3.551485 GTGTGTGTTTGTGGCAGAAAATC 59.449 43.478 11.72 8.33 0.00 2.17
4631 4704 3.194329 TGTGTGTTTGTGGCAGAAAATCA 59.806 39.130 11.72 10.67 0.00 2.57
4632 4705 3.798337 GTGTGTTTGTGGCAGAAAATCAG 59.202 43.478 11.72 0.00 0.00 2.90
4633 4706 3.698539 TGTGTTTGTGGCAGAAAATCAGA 59.301 39.130 11.72 2.64 0.00 3.27
4634 4707 4.202040 TGTGTTTGTGGCAGAAAATCAGAG 60.202 41.667 11.72 0.00 0.00 3.35
4635 4708 3.953612 TGTTTGTGGCAGAAAATCAGAGT 59.046 39.130 11.72 0.00 0.00 3.24
4636 4709 4.036734 TGTTTGTGGCAGAAAATCAGAGTC 59.963 41.667 11.72 0.00 0.00 3.36
4637 4710 2.416747 TGTGGCAGAAAATCAGAGTCG 58.583 47.619 0.00 0.00 0.00 4.18
4638 4711 1.734465 GTGGCAGAAAATCAGAGTCGG 59.266 52.381 0.00 0.00 0.00 4.79
4639 4712 1.623311 TGGCAGAAAATCAGAGTCGGA 59.377 47.619 0.00 0.00 0.00 4.55
4640 4713 2.003301 GGCAGAAAATCAGAGTCGGAC 58.997 52.381 0.00 0.00 0.00 4.79
4641 4714 1.656095 GCAGAAAATCAGAGTCGGACG 59.344 52.381 1.89 0.00 0.00 4.79
4642 4715 2.671351 GCAGAAAATCAGAGTCGGACGA 60.671 50.000 1.89 0.00 0.00 4.20
4643 4716 2.917971 CAGAAAATCAGAGTCGGACGAC 59.082 50.000 16.39 16.39 44.86 4.34
4644 4717 2.557056 AGAAAATCAGAGTCGGACGACA 59.443 45.455 24.48 6.37 46.76 4.35
4645 4718 2.638556 AAATCAGAGTCGGACGACAG 57.361 50.000 24.48 14.56 46.76 3.51
4646 4719 1.535833 AATCAGAGTCGGACGACAGT 58.464 50.000 24.48 9.92 46.76 3.55
4647 4720 1.535833 ATCAGAGTCGGACGACAGTT 58.464 50.000 24.48 6.23 46.76 3.16
4648 4721 2.174363 TCAGAGTCGGACGACAGTTA 57.826 50.000 24.48 6.73 46.76 2.24
4649 4722 2.074576 TCAGAGTCGGACGACAGTTAG 58.925 52.381 24.48 10.87 46.76 2.34
4650 4723 0.803740 AGAGTCGGACGACAGTTAGC 59.196 55.000 24.48 8.23 46.76 3.09
4651 4724 0.520404 GAGTCGGACGACAGTTAGCA 59.480 55.000 24.48 0.00 46.76 3.49
4652 4725 0.956633 AGTCGGACGACAGTTAGCAA 59.043 50.000 24.48 0.00 46.76 3.91
4653 4726 1.544691 AGTCGGACGACAGTTAGCAAT 59.455 47.619 24.48 0.05 46.76 3.56
4654 4727 2.029290 AGTCGGACGACAGTTAGCAATT 60.029 45.455 24.48 0.00 46.76 2.32
4655 4728 2.735134 GTCGGACGACAGTTAGCAATTT 59.265 45.455 18.86 0.00 44.02 1.82
4656 4729 3.185797 GTCGGACGACAGTTAGCAATTTT 59.814 43.478 18.86 0.00 44.02 1.82
4657 4730 4.386652 GTCGGACGACAGTTAGCAATTTTA 59.613 41.667 18.86 0.00 44.02 1.52
4658 4731 5.063060 GTCGGACGACAGTTAGCAATTTTAT 59.937 40.000 18.86 0.00 44.02 1.40
4659 4732 5.062934 TCGGACGACAGTTAGCAATTTTATG 59.937 40.000 0.00 0.00 0.00 1.90
4660 4733 5.062934 CGGACGACAGTTAGCAATTTTATGA 59.937 40.000 0.00 0.00 0.00 2.15
4661 4734 6.478588 GGACGACAGTTAGCAATTTTATGAG 58.521 40.000 0.00 0.00 0.00 2.90
4662 4735 6.312918 GGACGACAGTTAGCAATTTTATGAGA 59.687 38.462 0.00 0.00 0.00 3.27
4663 4736 7.011482 GGACGACAGTTAGCAATTTTATGAGAT 59.989 37.037 0.00 0.00 0.00 2.75
4664 4737 7.688372 ACGACAGTTAGCAATTTTATGAGATG 58.312 34.615 0.00 0.00 0.00 2.90
4665 4738 6.630443 CGACAGTTAGCAATTTTATGAGATGC 59.370 38.462 0.00 0.00 37.28 3.91
4666 4739 6.799512 ACAGTTAGCAATTTTATGAGATGCC 58.200 36.000 0.00 0.00 37.73 4.40
4667 4740 6.604795 ACAGTTAGCAATTTTATGAGATGCCT 59.395 34.615 0.00 0.00 37.73 4.75
4668 4741 7.775093 ACAGTTAGCAATTTTATGAGATGCCTA 59.225 33.333 0.00 0.00 37.73 3.93
4669 4742 8.790718 CAGTTAGCAATTTTATGAGATGCCTAT 58.209 33.333 0.00 0.00 37.73 2.57
4680 4753 8.902540 TTATGAGATGCCTATAAAATCAACGT 57.097 30.769 0.00 0.00 0.00 3.99
4681 4754 9.990360 TTATGAGATGCCTATAAAATCAACGTA 57.010 29.630 0.00 0.00 0.00 3.57
4684 4757 9.419297 TGAGATGCCTATAAAATCAACGTATAC 57.581 33.333 0.00 0.00 0.00 1.47
4685 4758 8.462143 AGATGCCTATAAAATCAACGTATACG 57.538 34.615 23.24 23.24 46.33 3.06
4686 4759 8.301720 AGATGCCTATAAAATCAACGTATACGA 58.698 33.333 30.77 9.97 43.02 3.43
4687 4760 8.997621 ATGCCTATAAAATCAACGTATACGAT 57.002 30.769 30.77 17.45 43.02 3.73
4688 4761 8.234887 TGCCTATAAAATCAACGTATACGATG 57.765 34.615 30.77 27.49 42.39 3.84
4689 4762 7.868922 TGCCTATAAAATCAACGTATACGATGT 59.131 33.333 30.77 16.29 41.83 3.06
4690 4763 8.160342 GCCTATAAAATCAACGTATACGATGTG 58.840 37.037 30.77 22.50 41.83 3.21
4691 4764 9.188588 CCTATAAAATCAACGTATACGATGTGT 57.811 33.333 30.77 18.28 41.83 3.72
4692 4765 9.989394 CTATAAAATCAACGTATACGATGTGTG 57.011 33.333 30.77 18.19 41.83 3.82
4693 4766 6.715344 AAAATCAACGTATACGATGTGTGT 57.285 33.333 30.77 14.50 41.83 3.72
4694 4767 5.696260 AATCAACGTATACGATGTGTGTG 57.304 39.130 30.77 15.19 41.83 3.82
4695 4768 4.163458 TCAACGTATACGATGTGTGTGT 57.837 40.909 30.77 2.75 41.83 3.72
4696 4769 3.915569 TCAACGTATACGATGTGTGTGTG 59.084 43.478 30.77 13.13 41.83 3.82
4697 4770 3.564235 ACGTATACGATGTGTGTGTGT 57.436 42.857 30.77 1.42 43.02 3.72
4698 4771 3.239254 ACGTATACGATGTGTGTGTGTG 58.761 45.455 30.77 0.00 43.02 3.82
4699 4772 3.239254 CGTATACGATGTGTGTGTGTGT 58.761 45.455 20.58 0.00 43.02 3.72
4700 4773 3.058913 CGTATACGATGTGTGTGTGTGTG 59.941 47.826 20.58 0.00 43.02 3.82
4701 4774 2.588027 TACGATGTGTGTGTGTGTGT 57.412 45.000 0.00 0.00 0.00 3.72
4702 4775 1.006086 ACGATGTGTGTGTGTGTGTG 58.994 50.000 0.00 0.00 0.00 3.82
4703 4776 1.006086 CGATGTGTGTGTGTGTGTGT 58.994 50.000 0.00 0.00 0.00 3.72
4704 4777 1.267483 CGATGTGTGTGTGTGTGTGTG 60.267 52.381 0.00 0.00 0.00 3.82
4705 4778 1.737236 GATGTGTGTGTGTGTGTGTGT 59.263 47.619 0.00 0.00 0.00 3.72
4706 4779 1.598882 TGTGTGTGTGTGTGTGTGTT 58.401 45.000 0.00 0.00 0.00 3.32
4707 4780 1.265365 TGTGTGTGTGTGTGTGTGTTG 59.735 47.619 0.00 0.00 0.00 3.33
4708 4781 1.265635 GTGTGTGTGTGTGTGTGTTGT 59.734 47.619 0.00 0.00 0.00 3.32
4709 4782 1.265365 TGTGTGTGTGTGTGTGTTGTG 59.735 47.619 0.00 0.00 0.00 3.33
4710 4783 1.265635 GTGTGTGTGTGTGTGTTGTGT 59.734 47.619 0.00 0.00 0.00 3.72
4711 4784 1.265365 TGTGTGTGTGTGTGTTGTGTG 59.735 47.619 0.00 0.00 0.00 3.82
4712 4785 1.265635 GTGTGTGTGTGTGTTGTGTGT 59.734 47.619 0.00 0.00 0.00 3.72
4713 4786 1.265365 TGTGTGTGTGTGTTGTGTGTG 59.735 47.619 0.00 0.00 0.00 3.82
4714 4787 1.265635 GTGTGTGTGTGTTGTGTGTGT 59.734 47.619 0.00 0.00 0.00 3.72
4715 4788 1.265365 TGTGTGTGTGTTGTGTGTGTG 59.735 47.619 0.00 0.00 0.00 3.82
4716 4789 1.265635 GTGTGTGTGTTGTGTGTGTGT 59.734 47.619 0.00 0.00 0.00 3.72
4717 4790 1.265365 TGTGTGTGTTGTGTGTGTGTG 59.735 47.619 0.00 0.00 0.00 3.82
4718 4791 1.265635 GTGTGTGTTGTGTGTGTGTGT 59.734 47.619 0.00 0.00 0.00 3.72
4719 4792 1.265365 TGTGTGTTGTGTGTGTGTGTG 59.735 47.619 0.00 0.00 0.00 3.82
4720 4793 0.877743 TGTGTTGTGTGTGTGTGTGG 59.122 50.000 0.00 0.00 0.00 4.17
4721 4794 0.455972 GTGTTGTGTGTGTGTGTGGC 60.456 55.000 0.00 0.00 0.00 5.01
4722 4795 0.890996 TGTTGTGTGTGTGTGTGGCA 60.891 50.000 0.00 0.00 0.00 4.92
4723 4796 0.179166 GTTGTGTGTGTGTGTGGCAG 60.179 55.000 0.00 0.00 0.00 4.85
4724 4797 0.322008 TTGTGTGTGTGTGTGGCAGA 60.322 50.000 0.00 0.00 0.00 4.26
4725 4798 0.322008 TGTGTGTGTGTGTGGCAGAA 60.322 50.000 0.00 0.00 0.00 3.02
4726 4799 0.808125 GTGTGTGTGTGTGGCAGAAA 59.192 50.000 0.00 0.00 0.00 2.52
4727 4800 1.201181 GTGTGTGTGTGTGGCAGAAAA 59.799 47.619 0.00 0.00 0.00 2.29
4728 4801 2.098614 TGTGTGTGTGTGGCAGAAAAT 58.901 42.857 0.00 0.00 0.00 1.82
4729 4802 2.098934 TGTGTGTGTGTGGCAGAAAATC 59.901 45.455 0.00 0.00 0.00 2.17
4730 4803 2.098934 GTGTGTGTGTGGCAGAAAATCA 59.901 45.455 0.00 0.00 0.00 2.57
4731 4804 2.358582 TGTGTGTGTGGCAGAAAATCAG 59.641 45.455 0.00 0.00 0.00 2.90
4732 4805 1.337703 TGTGTGTGGCAGAAAATCAGC 59.662 47.619 0.00 0.00 0.00 4.26
4733 4806 1.610522 GTGTGTGGCAGAAAATCAGCT 59.389 47.619 0.00 0.00 0.00 4.24
4734 4807 1.881973 TGTGTGGCAGAAAATCAGCTC 59.118 47.619 0.00 0.00 0.00 4.09
4735 4808 1.881973 GTGTGGCAGAAAATCAGCTCA 59.118 47.619 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.765036 AGTCAGATGTGCCAGTTGATAATAAG 59.235 38.462 0.00 0.00 0.00 1.73
180 181 5.970640 AGGGATTTAATTGGACCTAGACTCA 59.029 40.000 0.00 0.00 0.00 3.41
367 368 7.283329 AGAAATATTTCTTCCGCTATGGTTCT 58.717 34.615 22.43 0.00 44.70 3.01
409 410 2.158325 TGGGAACTCTCATTTTTGGGCT 60.158 45.455 0.00 0.00 0.00 5.19
426 427 4.160329 CCATGTATACTAGAAGCCTGGGA 58.840 47.826 4.17 0.00 0.00 4.37
445 446 1.697982 GGTTCTAAGGCGGTATCCCAT 59.302 52.381 0.00 0.00 0.00 4.00
519 520 3.637229 TCCTCGGCAAATGGTTGTTTAAA 59.363 39.130 0.00 0.00 37.06 1.52
893 894 5.931724 TGATGTATGGATTGTAATAGCACGG 59.068 40.000 0.00 0.00 0.00 4.94
918 919 7.309012 GCAGGGATCGAGTACAATAATACTACA 60.309 40.741 0.00 0.00 35.48 2.74
919 920 7.028361 GCAGGGATCGAGTACAATAATACTAC 58.972 42.308 0.00 0.00 35.48 2.73
962 965 4.581409 ACACCAACACCCAACAAGTTATAC 59.419 41.667 0.00 0.00 0.00 1.47
1023 1026 0.523072 CTGCCCCAATCTTTGACACG 59.477 55.000 0.00 0.00 0.00 4.49
1094 1100 3.507233 TGTTGGCAATTCCTTTAGAGCTG 59.493 43.478 1.92 0.00 35.26 4.24
1124 1130 7.148423 TGGTCGTCAATTCTACATTGATTCTTG 60.148 37.037 0.79 0.00 39.80 3.02
1329 1335 6.474140 TGACTAAAGACCTTTATATGGCGA 57.526 37.500 3.03 0.00 34.86 5.54
1543 1549 2.483106 CAGTGCTCAACCATTCAGTCAG 59.517 50.000 0.00 0.00 0.00 3.51
1574 1580 4.092091 CAGAAACTGTTATCACCGAGCTTC 59.908 45.833 0.00 0.00 0.00 3.86
1629 1635 8.552296 ACTTTCTCCCTATCATACACATTCTTT 58.448 33.333 0.00 0.00 0.00 2.52
1927 1947 2.163818 TCCTTCCGTGTTGTGATCAC 57.836 50.000 19.27 19.27 0.00 3.06
2067 2087 2.925170 ACTGCCTTGAGCTCCGGT 60.925 61.111 12.15 3.67 44.23 5.28
2154 2174 2.902705 ACTCTGTTGGTTGCTTCGTA 57.097 45.000 0.00 0.00 0.00 3.43
2194 2214 1.861971 AACTCGTCCCGAAGTTGTTC 58.138 50.000 0.00 0.00 34.74 3.18
2295 2315 1.133823 TCTTCAGGGAACAAGCTGCAA 60.134 47.619 1.02 0.00 0.00 4.08
2533 2553 0.037447 GCAGAGCCAAACCTCTCCTT 59.963 55.000 0.00 0.00 40.11 3.36
2575 2595 3.058914 CGACGAACTTCTTTTTCCATGCT 60.059 43.478 0.00 0.00 0.00 3.79
2601 2621 2.615493 GGTCCAACCACTTGATGTCGAT 60.615 50.000 0.00 0.00 38.42 3.59
2646 2678 1.335810 GACATGATGGTACGTAGCCGA 59.664 52.381 21.20 4.80 37.88 5.54
2652 2684 2.233676 TGCAAGAGACATGATGGTACGT 59.766 45.455 0.00 0.00 0.00 3.57
2667 2699 0.106708 AGGACGAAGCTGTTGCAAGA 59.893 50.000 0.00 0.00 42.74 3.02
2721 2753 3.626670 GCTCGAGAACAGTAAGGTAGCTA 59.373 47.826 18.75 0.00 0.00 3.32
2763 2795 0.745486 CGATGGATGCTGGCACTTCA 60.745 55.000 0.00 0.00 0.00 3.02
2796 2828 3.251004 GCCTTAATCCAATGTAGCGAAGG 59.749 47.826 0.00 0.00 36.18 3.46
2811 2843 3.054655 ACTGGACATTGGTACGCCTTAAT 60.055 43.478 0.00 0.00 35.27 1.40
2862 2894 2.743636 TGTCCAATGTCTCGAGGTTC 57.256 50.000 13.56 4.50 0.00 3.62
2925 2957 0.601311 GGTGTCGCAGCTTCTCAACT 60.601 55.000 0.00 0.00 0.00 3.16
2949 2981 1.202794 TCATCAGCAAACCTGTCTGCA 60.203 47.619 0.00 0.00 42.38 4.41
3001 3033 3.325293 AATCATATGAGGCGCTTCGAT 57.675 42.857 15.28 11.54 0.00 3.59
3048 3080 2.202797 CTGGCATGGACGGTCTCG 60.203 66.667 8.23 0.00 43.02 4.04
3073 3105 6.012113 TCATTTTCTTCAACTCCATGGACAT 58.988 36.000 11.44 0.00 0.00 3.06
3079 3111 6.310149 ACTTCCTCATTTTCTTCAACTCCAT 58.690 36.000 0.00 0.00 0.00 3.41
3126 3158 8.432013 AGGTCATCACAGTTAGATGCATTAATA 58.568 33.333 0.00 0.00 41.98 0.98
3215 3247 5.294552 AGTGACTGAAAAGAAAGTTTCTCGG 59.705 40.000 18.28 13.24 39.61 4.63
3231 3263 3.072330 TGGAAATTGGCACTAGTGACTGA 59.928 43.478 28.56 17.69 39.96 3.41
3285 3317 1.133181 TGAGTGTCCCATCAGCCCAA 61.133 55.000 0.00 0.00 0.00 4.12
3742 3774 1.422161 AAGGGAGGCAGACTGCTGTT 61.422 55.000 25.92 12.65 44.28 3.16
3753 3785 4.095932 CGTTTCTTAATAACCAAGGGAGGC 59.904 45.833 0.00 0.00 0.00 4.70
3828 3860 6.936900 TGATACTATTACAGTACCGTAGGACC 59.063 42.308 0.00 0.00 46.75 4.46
3979 4029 9.630098 AAATCCAAGCAGCGAAAATTATATATG 57.370 29.630 0.00 0.00 0.00 1.78
3982 4032 6.421801 GCAAATCCAAGCAGCGAAAATTATAT 59.578 34.615 0.00 0.00 0.00 0.86
4053 4117 5.843019 AGGTCCAAGAGTTTCCTCAAATA 57.157 39.130 0.00 0.00 40.40 1.40
4058 4122 4.461198 TGAAAAGGTCCAAGAGTTTCCTC 58.539 43.478 0.00 0.00 38.04 3.71
4115 4181 1.906105 TATCGCCCTGGTGGTGGAAC 61.906 60.000 0.00 0.00 45.26 3.62
4209 4275 5.314529 TGGGTTGTTCCATACGAAATACAA 58.685 37.500 0.00 0.00 38.11 2.41
4251 4320 6.381801 CACAAACAACAGAAAGTTTCAGAGT 58.618 36.000 17.65 9.90 38.74 3.24
4257 4326 5.177327 CACAAGCACAAACAACAGAAAGTTT 59.823 36.000 0.00 0.00 38.74 2.66
4275 4348 1.009078 TCATACGCTGATGCACAAGC 58.991 50.000 11.57 11.57 39.64 4.01
4282 4355 2.347939 GCACATTCGTCATACGCTGATG 60.348 50.000 8.25 2.20 42.21 3.07
4283 4356 1.860950 GCACATTCGTCATACGCTGAT 59.139 47.619 8.25 0.00 42.21 2.90
4287 4360 3.155344 GTATGCACATTCGTCATACGC 57.845 47.619 0.00 0.00 42.21 4.42
4292 4365 2.931512 TCTCGTATGCACATTCGTCA 57.068 45.000 9.07 0.00 34.04 4.35
4303 4376 4.627467 CCTTCCTTTGACACTTCTCGTATG 59.373 45.833 0.00 0.00 0.00 2.39
4305 4378 3.893200 TCCTTCCTTTGACACTTCTCGTA 59.107 43.478 0.00 0.00 0.00 3.43
4307 4380 3.386768 TCCTTCCTTTGACACTTCTCG 57.613 47.619 0.00 0.00 0.00 4.04
4335 4408 1.163554 GTGAGCCTTTGCCTCTTCAG 58.836 55.000 0.00 0.00 38.69 3.02
4339 4412 0.475906 AACTGTGAGCCTTTGCCTCT 59.524 50.000 0.00 0.00 38.69 3.69
4350 4423 3.307480 CCCCAGTAACCCTTAACTGTGAG 60.307 52.174 2.19 0.00 41.25 3.51
4355 4428 3.572661 TCTCCCCAGTAACCCTTAACT 57.427 47.619 0.00 0.00 0.00 2.24
4364 4437 2.185387 GTAGCACCTTCTCCCCAGTAA 58.815 52.381 0.00 0.00 0.00 2.24
4386 4459 0.944386 TTTGAAAGAGCAGTGTCGGC 59.056 50.000 0.00 0.00 0.00 5.54
4388 4461 4.152938 TCATCATTTGAAAGAGCAGTGTCG 59.847 41.667 0.00 0.00 0.00 4.35
4408 4481 8.859236 AGCTAACATATGCACAGAAATATCAT 57.141 30.769 1.58 0.00 0.00 2.45
4422 4495 7.807977 AAGGGTAATCACAAGCTAACATATG 57.192 36.000 0.00 0.00 0.00 1.78
4424 4497 7.630082 AGAAAGGGTAATCACAAGCTAACATA 58.370 34.615 0.00 0.00 0.00 2.29
4425 4498 6.485171 AGAAAGGGTAATCACAAGCTAACAT 58.515 36.000 0.00 0.00 0.00 2.71
4426 4499 5.876357 AGAAAGGGTAATCACAAGCTAACA 58.124 37.500 0.00 0.00 0.00 2.41
4427 4500 5.354513 GGAGAAAGGGTAATCACAAGCTAAC 59.645 44.000 0.00 0.00 0.00 2.34
4428 4501 5.497474 GGAGAAAGGGTAATCACAAGCTAA 58.503 41.667 0.00 0.00 0.00 3.09
4429 4502 4.382685 CGGAGAAAGGGTAATCACAAGCTA 60.383 45.833 0.00 0.00 0.00 3.32
4430 4503 3.619979 CGGAGAAAGGGTAATCACAAGCT 60.620 47.826 0.00 0.00 0.00 3.74
4431 4504 2.678336 CGGAGAAAGGGTAATCACAAGC 59.322 50.000 0.00 0.00 0.00 4.01
4432 4505 3.684788 CACGGAGAAAGGGTAATCACAAG 59.315 47.826 0.00 0.00 0.00 3.16
4433 4506 3.071892 ACACGGAGAAAGGGTAATCACAA 59.928 43.478 0.00 0.00 0.00 3.33
4434 4507 2.635915 ACACGGAGAAAGGGTAATCACA 59.364 45.455 0.00 0.00 0.00 3.58
4435 4508 3.329929 ACACGGAGAAAGGGTAATCAC 57.670 47.619 0.00 0.00 0.00 3.06
4436 4509 3.325425 TCAACACGGAGAAAGGGTAATCA 59.675 43.478 0.00 0.00 0.00 2.57
4437 4510 3.933332 CTCAACACGGAGAAAGGGTAATC 59.067 47.826 0.00 0.00 37.05 1.75
4438 4511 3.326880 ACTCAACACGGAGAAAGGGTAAT 59.673 43.478 0.00 0.00 38.30 1.89
4439 4512 2.701951 ACTCAACACGGAGAAAGGGTAA 59.298 45.455 0.00 0.00 38.30 2.85
4457 4530 7.284919 TCCCCTTTATCAAACTTCAAAACTC 57.715 36.000 0.00 0.00 0.00 3.01
4467 4540 9.154847 CATTCATTTTCTTCCCCTTTATCAAAC 57.845 33.333 0.00 0.00 0.00 2.93
4469 4542 8.434589 ACATTCATTTTCTTCCCCTTTATCAA 57.565 30.769 0.00 0.00 0.00 2.57
4471 4544 9.725019 AAAACATTCATTTTCTTCCCCTTTATC 57.275 29.630 0.00 0.00 0.00 1.75
4494 4567 2.123342 CGCTCACGAAAATTGGCAAAA 58.877 42.857 3.01 0.00 43.93 2.44
4495 4568 1.601663 CCGCTCACGAAAATTGGCAAA 60.602 47.619 3.01 0.00 43.93 3.68
4496 4569 0.039617 CCGCTCACGAAAATTGGCAA 60.040 50.000 0.68 0.68 43.93 4.52
4497 4570 1.578926 CCGCTCACGAAAATTGGCA 59.421 52.632 0.00 0.00 43.93 4.92
4498 4571 1.801512 GCCGCTCACGAAAATTGGC 60.802 57.895 0.00 0.00 43.93 4.52
4499 4572 0.729140 GTGCCGCTCACGAAAATTGG 60.729 55.000 0.00 0.00 43.93 3.16
4500 4573 2.712077 GTGCCGCTCACGAAAATTG 58.288 52.632 0.00 0.00 43.93 2.32
4508 4581 0.741326 TCTCTATCAGTGCCGCTCAC 59.259 55.000 0.00 0.00 45.98 3.51
4509 4582 0.741326 GTCTCTATCAGTGCCGCTCA 59.259 55.000 0.00 0.00 0.00 4.26
4510 4583 0.741326 TGTCTCTATCAGTGCCGCTC 59.259 55.000 0.00 0.00 0.00 5.03
4511 4584 0.457851 GTGTCTCTATCAGTGCCGCT 59.542 55.000 0.00 0.00 0.00 5.52
4512 4585 0.173481 TGTGTCTCTATCAGTGCCGC 59.827 55.000 0.00 0.00 0.00 6.53
4513 4586 1.202348 CCTGTGTCTCTATCAGTGCCG 60.202 57.143 0.00 0.00 0.00 5.69
4514 4587 1.472376 GCCTGTGTCTCTATCAGTGCC 60.472 57.143 0.00 0.00 0.00 5.01
4515 4588 1.205655 TGCCTGTGTCTCTATCAGTGC 59.794 52.381 0.00 0.00 0.00 4.40
4516 4589 2.738000 GCTGCCTGTGTCTCTATCAGTG 60.738 54.545 0.00 0.00 0.00 3.66
4517 4590 1.480137 GCTGCCTGTGTCTCTATCAGT 59.520 52.381 0.00 0.00 0.00 3.41
4518 4591 1.755959 AGCTGCCTGTGTCTCTATCAG 59.244 52.381 0.00 0.00 0.00 2.90
4519 4592 1.857965 AGCTGCCTGTGTCTCTATCA 58.142 50.000 0.00 0.00 0.00 2.15
4520 4593 2.167281 TGAAGCTGCCTGTGTCTCTATC 59.833 50.000 0.00 0.00 0.00 2.08
4521 4594 2.168106 CTGAAGCTGCCTGTGTCTCTAT 59.832 50.000 0.00 0.00 0.00 1.98
4522 4595 1.547820 CTGAAGCTGCCTGTGTCTCTA 59.452 52.381 0.00 0.00 0.00 2.43
4523 4596 0.321021 CTGAAGCTGCCTGTGTCTCT 59.679 55.000 0.00 0.00 0.00 3.10
4524 4597 0.319728 TCTGAAGCTGCCTGTGTCTC 59.680 55.000 0.00 0.00 0.00 3.36
4525 4598 0.761187 TTCTGAAGCTGCCTGTGTCT 59.239 50.000 0.00 0.00 0.00 3.41
4526 4599 1.155042 CTTCTGAAGCTGCCTGTGTC 58.845 55.000 4.20 0.00 0.00 3.67
4527 4600 3.319135 CTTCTGAAGCTGCCTGTGT 57.681 52.632 4.20 0.00 0.00 3.72
4547 4620 4.202080 CCACAGCTTGACCCATAAATGATG 60.202 45.833 0.00 0.00 35.05 3.07
4548 4621 3.956199 CCACAGCTTGACCCATAAATGAT 59.044 43.478 0.00 0.00 0.00 2.45
4549 4622 3.245229 ACCACAGCTTGACCCATAAATGA 60.245 43.478 0.00 0.00 0.00 2.57
4550 4623 3.091545 ACCACAGCTTGACCCATAAATG 58.908 45.455 0.00 0.00 0.00 2.32
4551 4624 3.091545 CACCACAGCTTGACCCATAAAT 58.908 45.455 0.00 0.00 0.00 1.40
4552 4625 2.158534 ACACCACAGCTTGACCCATAAA 60.159 45.455 0.00 0.00 0.00 1.40
4553 4626 1.423541 ACACCACAGCTTGACCCATAA 59.576 47.619 0.00 0.00 0.00 1.90
4554 4627 1.064003 ACACCACAGCTTGACCCATA 58.936 50.000 0.00 0.00 0.00 2.74
4555 4628 0.538057 CACACCACAGCTTGACCCAT 60.538 55.000 0.00 0.00 0.00 4.00
4556 4629 1.152984 CACACCACAGCTTGACCCA 60.153 57.895 0.00 0.00 0.00 4.51
4557 4630 1.898574 CCACACCACAGCTTGACCC 60.899 63.158 0.00 0.00 0.00 4.46
4558 4631 1.152963 ACCACACCACAGCTTGACC 60.153 57.895 0.00 0.00 0.00 4.02
4559 4632 0.748005 ACACCACACCACAGCTTGAC 60.748 55.000 0.00 0.00 0.00 3.18
4560 4633 0.463654 GACACCACACCACAGCTTGA 60.464 55.000 0.00 0.00 0.00 3.02
4561 4634 0.464373 AGACACCACACCACAGCTTG 60.464 55.000 0.00 0.00 0.00 4.01
4562 4635 0.179045 GAGACACCACACCACAGCTT 60.179 55.000 0.00 0.00 0.00 3.74
4563 4636 1.337384 TGAGACACCACACCACAGCT 61.337 55.000 0.00 0.00 0.00 4.24
4564 4637 0.250467 ATGAGACACCACACCACAGC 60.250 55.000 0.00 0.00 0.00 4.40
4565 4638 1.345741 AGATGAGACACCACACCACAG 59.654 52.381 0.00 0.00 0.00 3.66
4566 4639 1.423584 AGATGAGACACCACACCACA 58.576 50.000 0.00 0.00 0.00 4.17
4567 4640 3.195610 TCATAGATGAGACACCACACCAC 59.804 47.826 0.00 0.00 32.11 4.16
4568 4641 3.440127 TCATAGATGAGACACCACACCA 58.560 45.455 0.00 0.00 32.11 4.17
4569 4642 4.160439 TCTTCATAGATGAGACACCACACC 59.840 45.833 0.00 0.00 38.19 4.16
4570 4643 5.330455 TCTTCATAGATGAGACACCACAC 57.670 43.478 0.00 0.00 38.19 3.82
4571 4644 5.221126 CGATCTTCATAGATGAGACACCACA 60.221 44.000 0.00 0.00 41.23 4.17
4572 4645 5.218885 CGATCTTCATAGATGAGACACCAC 58.781 45.833 0.00 0.00 41.23 4.16
4573 4646 4.889995 ACGATCTTCATAGATGAGACACCA 59.110 41.667 0.00 0.00 41.23 4.17
4574 4647 5.446143 ACGATCTTCATAGATGAGACACC 57.554 43.478 0.00 0.00 41.23 4.16
4585 4658 9.981114 ACACATCACATAATTACGATCTTCATA 57.019 29.630 0.00 0.00 0.00 2.15
4586 4659 8.768019 CACACATCACATAATTACGATCTTCAT 58.232 33.333 0.00 0.00 0.00 2.57
4587 4660 7.763985 ACACACATCACATAATTACGATCTTCA 59.236 33.333 0.00 0.00 0.00 3.02
4588 4661 8.058328 CACACACATCACATAATTACGATCTTC 58.942 37.037 0.00 0.00 0.00 2.87
4589 4662 7.549134 ACACACACATCACATAATTACGATCTT 59.451 33.333 0.00 0.00 0.00 2.40
4590 4663 7.041721 ACACACACATCACATAATTACGATCT 58.958 34.615 0.00 0.00 0.00 2.75
4591 4664 7.234187 ACACACACATCACATAATTACGATC 57.766 36.000 0.00 0.00 0.00 3.69
4592 4665 7.609760 AACACACACATCACATAATTACGAT 57.390 32.000 0.00 0.00 0.00 3.73
4593 4666 7.041712 ACAAACACACACATCACATAATTACGA 60.042 33.333 0.00 0.00 0.00 3.43
4594 4667 7.059374 CACAAACACACACATCACATAATTACG 59.941 37.037 0.00 0.00 0.00 3.18
4595 4668 7.325821 CCACAAACACACACATCACATAATTAC 59.674 37.037 0.00 0.00 0.00 1.89
4596 4669 7.366513 CCACAAACACACACATCACATAATTA 58.633 34.615 0.00 0.00 0.00 1.40
4597 4670 6.215121 CCACAAACACACACATCACATAATT 58.785 36.000 0.00 0.00 0.00 1.40
4598 4671 5.771469 CCACAAACACACACATCACATAAT 58.229 37.500 0.00 0.00 0.00 1.28
4599 4672 4.498850 GCCACAAACACACACATCACATAA 60.499 41.667 0.00 0.00 0.00 1.90
4600 4673 3.004210 GCCACAAACACACACATCACATA 59.996 43.478 0.00 0.00 0.00 2.29
4601 4674 2.223782 GCCACAAACACACACATCACAT 60.224 45.455 0.00 0.00 0.00 3.21
4602 4675 1.133982 GCCACAAACACACACATCACA 59.866 47.619 0.00 0.00 0.00 3.58
4603 4676 1.133982 TGCCACAAACACACACATCAC 59.866 47.619 0.00 0.00 0.00 3.06
4604 4677 1.404748 CTGCCACAAACACACACATCA 59.595 47.619 0.00 0.00 0.00 3.07
4605 4678 1.675483 TCTGCCACAAACACACACATC 59.325 47.619 0.00 0.00 0.00 3.06
4606 4679 1.761449 TCTGCCACAAACACACACAT 58.239 45.000 0.00 0.00 0.00 3.21
4607 4680 1.539157 TTCTGCCACAAACACACACA 58.461 45.000 0.00 0.00 0.00 3.72
4608 4681 2.645730 TTTCTGCCACAAACACACAC 57.354 45.000 0.00 0.00 0.00 3.82
4609 4682 3.194329 TGATTTTCTGCCACAAACACACA 59.806 39.130 0.00 0.00 0.00 3.72
4610 4683 3.779759 TGATTTTCTGCCACAAACACAC 58.220 40.909 0.00 0.00 0.00 3.82
4611 4684 3.698539 TCTGATTTTCTGCCACAAACACA 59.301 39.130 0.00 0.00 0.00 3.72
4612 4685 4.202050 ACTCTGATTTTCTGCCACAAACAC 60.202 41.667 0.00 0.00 0.00 3.32
4613 4686 3.953612 ACTCTGATTTTCTGCCACAAACA 59.046 39.130 0.00 0.00 0.00 2.83
4614 4687 4.540824 GACTCTGATTTTCTGCCACAAAC 58.459 43.478 0.00 0.00 0.00 2.93
4615 4688 3.250762 CGACTCTGATTTTCTGCCACAAA 59.749 43.478 0.00 0.00 0.00 2.83
4616 4689 2.807967 CGACTCTGATTTTCTGCCACAA 59.192 45.455 0.00 0.00 0.00 3.33
4617 4690 2.416747 CGACTCTGATTTTCTGCCACA 58.583 47.619 0.00 0.00 0.00 4.17
4618 4691 1.734465 CCGACTCTGATTTTCTGCCAC 59.266 52.381 0.00 0.00 0.00 5.01
4619 4692 1.623311 TCCGACTCTGATTTTCTGCCA 59.377 47.619 0.00 0.00 0.00 4.92
4620 4693 2.003301 GTCCGACTCTGATTTTCTGCC 58.997 52.381 0.00 0.00 0.00 4.85
4621 4694 1.656095 CGTCCGACTCTGATTTTCTGC 59.344 52.381 0.00 0.00 0.00 4.26
4622 4695 2.917971 GTCGTCCGACTCTGATTTTCTG 59.082 50.000 12.31 0.00 41.57 3.02
4623 4696 2.557056 TGTCGTCCGACTCTGATTTTCT 59.443 45.455 19.30 0.00 44.80 2.52
4624 4697 2.917971 CTGTCGTCCGACTCTGATTTTC 59.082 50.000 19.30 0.00 44.80 2.29
4625 4698 2.296471 ACTGTCGTCCGACTCTGATTTT 59.704 45.455 19.30 0.00 44.80 1.82
4626 4699 1.887198 ACTGTCGTCCGACTCTGATTT 59.113 47.619 19.30 0.00 44.80 2.17
4627 4700 1.535833 ACTGTCGTCCGACTCTGATT 58.464 50.000 19.30 0.00 44.80 2.57
4628 4701 1.535833 AACTGTCGTCCGACTCTGAT 58.464 50.000 19.30 3.89 44.80 2.90
4629 4702 2.074576 CTAACTGTCGTCCGACTCTGA 58.925 52.381 19.30 0.00 44.80 3.27
4630 4703 1.466024 GCTAACTGTCGTCCGACTCTG 60.466 57.143 19.30 12.18 44.80 3.35
4631 4704 0.803740 GCTAACTGTCGTCCGACTCT 59.196 55.000 19.30 7.53 44.80 3.24
4632 4705 0.520404 TGCTAACTGTCGTCCGACTC 59.480 55.000 19.30 0.00 44.80 3.36
4633 4706 0.956633 TTGCTAACTGTCGTCCGACT 59.043 50.000 19.30 3.68 44.80 4.18
4634 4707 1.992170 ATTGCTAACTGTCGTCCGAC 58.008 50.000 12.66 12.66 44.77 4.79
4635 4708 2.736144 AATTGCTAACTGTCGTCCGA 57.264 45.000 0.00 0.00 0.00 4.55
4636 4709 3.806316 AAAATTGCTAACTGTCGTCCG 57.194 42.857 0.00 0.00 0.00 4.79
4637 4710 6.312918 TCTCATAAAATTGCTAACTGTCGTCC 59.687 38.462 0.00 0.00 0.00 4.79
4638 4711 7.290857 TCTCATAAAATTGCTAACTGTCGTC 57.709 36.000 0.00 0.00 0.00 4.20
4639 4712 7.677276 GCATCTCATAAAATTGCTAACTGTCGT 60.677 37.037 0.00 0.00 0.00 4.34
4640 4713 6.630443 GCATCTCATAAAATTGCTAACTGTCG 59.370 38.462 0.00 0.00 0.00 4.35
4641 4714 6.914757 GGCATCTCATAAAATTGCTAACTGTC 59.085 38.462 0.00 0.00 33.86 3.51
4642 4715 6.604795 AGGCATCTCATAAAATTGCTAACTGT 59.395 34.615 0.00 0.00 33.86 3.55
4643 4716 7.035840 AGGCATCTCATAAAATTGCTAACTG 57.964 36.000 0.00 0.00 33.86 3.16
4644 4717 8.930846 ATAGGCATCTCATAAAATTGCTAACT 57.069 30.769 0.00 0.00 33.86 2.24
4654 4727 9.337396 ACGTTGATTTTATAGGCATCTCATAAA 57.663 29.630 0.00 0.00 0.00 1.40
4655 4728 8.902540 ACGTTGATTTTATAGGCATCTCATAA 57.097 30.769 0.00 0.00 0.00 1.90
4658 4731 9.419297 GTATACGTTGATTTTATAGGCATCTCA 57.581 33.333 0.00 0.00 0.00 3.27
4659 4732 8.584600 CGTATACGTTGATTTTATAGGCATCTC 58.415 37.037 17.16 0.00 34.11 2.75
4660 4733 8.301720 TCGTATACGTTGATTTTATAGGCATCT 58.698 33.333 23.67 0.00 40.80 2.90
4661 4734 8.456904 TCGTATACGTTGATTTTATAGGCATC 57.543 34.615 23.67 0.00 40.80 3.91
4662 4735 8.869897 CATCGTATACGTTGATTTTATAGGCAT 58.130 33.333 25.22 5.09 40.40 4.40
4663 4736 7.868922 ACATCGTATACGTTGATTTTATAGGCA 59.131 33.333 32.32 8.59 40.40 4.75
4664 4737 8.160342 CACATCGTATACGTTGATTTTATAGGC 58.840 37.037 32.32 0.00 40.40 3.93
4665 4738 9.188588 ACACATCGTATACGTTGATTTTATAGG 57.811 33.333 32.32 13.04 40.40 2.57
4666 4739 9.989394 CACACATCGTATACGTTGATTTTATAG 57.011 33.333 32.32 17.32 40.40 1.31
4667 4740 9.518906 ACACACATCGTATACGTTGATTTTATA 57.481 29.630 32.32 10.20 40.40 0.98
4668 4741 8.325282 CACACACATCGTATACGTTGATTTTAT 58.675 33.333 32.32 13.10 40.40 1.40
4669 4742 7.328982 ACACACACATCGTATACGTTGATTTTA 59.671 33.333 32.32 11.50 40.40 1.52
4670 4743 6.146510 ACACACACATCGTATACGTTGATTTT 59.853 34.615 32.32 14.70 40.40 1.82
4671 4744 5.636121 ACACACACATCGTATACGTTGATTT 59.364 36.000 32.32 17.94 40.40 2.17
4672 4745 5.061684 CACACACACATCGTATACGTTGATT 59.938 40.000 32.32 19.84 40.40 2.57
4673 4746 4.561213 CACACACACATCGTATACGTTGAT 59.439 41.667 32.32 20.93 40.40 2.57
4674 4747 3.915569 CACACACACATCGTATACGTTGA 59.084 43.478 32.32 14.15 40.40 3.18
4675 4748 3.671459 ACACACACACATCGTATACGTTG 59.329 43.478 26.80 26.80 42.75 4.10
4676 4749 3.671459 CACACACACACATCGTATACGTT 59.329 43.478 23.67 13.80 40.80 3.99
4677 4750 3.239254 CACACACACACATCGTATACGT 58.761 45.455 23.67 9.53 40.80 3.57
4678 4751 3.058913 CACACACACACACATCGTATACG 59.941 47.826 19.23 19.23 41.45 3.06
4679 4752 3.985279 ACACACACACACACATCGTATAC 59.015 43.478 0.00 0.00 0.00 1.47
4680 4753 3.984633 CACACACACACACACATCGTATA 59.015 43.478 0.00 0.00 0.00 1.47
4681 4754 2.799978 CACACACACACACACATCGTAT 59.200 45.455 0.00 0.00 0.00 3.06
4682 4755 2.197577 CACACACACACACACATCGTA 58.802 47.619 0.00 0.00 0.00 3.43
4683 4756 1.006086 CACACACACACACACATCGT 58.994 50.000 0.00 0.00 0.00 3.73
4684 4757 1.006086 ACACACACACACACACATCG 58.994 50.000 0.00 0.00 0.00 3.84
4685 4758 1.737236 ACACACACACACACACACATC 59.263 47.619 0.00 0.00 0.00 3.06
4686 4759 1.819928 ACACACACACACACACACAT 58.180 45.000 0.00 0.00 0.00 3.21
4687 4760 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
4688 4761 1.265635 ACAACACACACACACACACAC 59.734 47.619 0.00 0.00 0.00 3.82
4689 4762 1.265365 CACAACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
4690 4763 1.265635 ACACAACACACACACACACAC 59.734 47.619 0.00 0.00 0.00 3.82
4691 4764 1.265365 CACACAACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
4692 4765 1.265635 ACACACAACACACACACACAC 59.734 47.619 0.00 0.00 0.00 3.82
4693 4766 1.265365 CACACACAACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
4694 4767 1.265635 ACACACACAACACACACACAC 59.734 47.619 0.00 0.00 0.00 3.82
4695 4768 1.265365 CACACACACAACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
4696 4769 1.265635 ACACACACACAACACACACAC 59.734 47.619 0.00 0.00 0.00 3.82
4697 4770 1.265365 CACACACACACAACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
4698 4771 1.265635 ACACACACACACAACACACAC 59.734 47.619 0.00 0.00 0.00 3.82
4699 4772 1.265365 CACACACACACACAACACACA 59.735 47.619 0.00 0.00 0.00 3.72
4700 4773 1.400888 CCACACACACACACAACACAC 60.401 52.381 0.00 0.00 0.00 3.82
4701 4774 0.877743 CCACACACACACACAACACA 59.122 50.000 0.00 0.00 0.00 3.72
4702 4775 0.455972 GCCACACACACACACAACAC 60.456 55.000 0.00 0.00 0.00 3.32
4703 4776 0.890996 TGCCACACACACACACAACA 60.891 50.000 0.00 0.00 0.00 3.33
4704 4777 0.179166 CTGCCACACACACACACAAC 60.179 55.000 0.00 0.00 0.00 3.32
4705 4778 0.322008 TCTGCCACACACACACACAA 60.322 50.000 0.00 0.00 0.00 3.33
4706 4779 0.322008 TTCTGCCACACACACACACA 60.322 50.000 0.00 0.00 0.00 3.72
4707 4780 0.808125 TTTCTGCCACACACACACAC 59.192 50.000 0.00 0.00 0.00 3.82
4708 4781 1.539157 TTTTCTGCCACACACACACA 58.461 45.000 0.00 0.00 0.00 3.72
4709 4782 2.098934 TGATTTTCTGCCACACACACAC 59.901 45.455 0.00 0.00 0.00 3.82
4710 4783 2.358582 CTGATTTTCTGCCACACACACA 59.641 45.455 0.00 0.00 0.00 3.72
4711 4784 2.859806 GCTGATTTTCTGCCACACACAC 60.860 50.000 0.00 0.00 35.62 3.82
4712 4785 1.337703 GCTGATTTTCTGCCACACACA 59.662 47.619 0.00 0.00 35.62 3.72
4713 4786 1.610522 AGCTGATTTTCTGCCACACAC 59.389 47.619 3.18 0.00 41.50 3.82
4714 4787 1.881973 GAGCTGATTTTCTGCCACACA 59.118 47.619 0.00 0.00 41.50 3.72
4715 4788 1.881973 TGAGCTGATTTTCTGCCACAC 59.118 47.619 0.00 0.00 41.50 3.82
4716 4789 2.275134 TGAGCTGATTTTCTGCCACA 57.725 45.000 0.00 2.46 41.50 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.