Multiple sequence alignment - TraesCS1B01G018700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G018700 chr1B 100.000 4100 0 0 1 4100 8917220 8913121 0.000000e+00 7572.0
1 TraesCS1B01G018700 chr1B 95.562 1690 63 9 2181 3868 9263964 9265643 0.000000e+00 2695.0
2 TraesCS1B01G018700 chr1B 91.145 1660 107 17 245 1888 9262332 9263967 0.000000e+00 2215.0
3 TraesCS1B01G018700 chr1B 87.836 781 79 10 2362 3129 9270481 9271258 0.000000e+00 902.0
4 TraesCS1B01G018700 chr1B 86.080 704 68 17 1045 1740 9269670 9270351 0.000000e+00 730.0
5 TraesCS1B01G018700 chr1B 100.000 245 0 0 1 245 9261865 9262109 1.740000e-123 453.0
6 TraesCS1B01G018700 chr1B 86.000 100 13 1 4002 4100 334894532 334894631 5.610000e-19 106.0
7 TraesCS1B01G018700 chr1A 86.166 1424 151 21 334 1743 8294849 8296240 0.000000e+00 1496.0
8 TraesCS1B01G018700 chr1A 83.579 1017 103 30 752 1742 8311276 8312254 0.000000e+00 894.0
9 TraesCS1B01G018700 chr1A 89.790 666 67 1 2362 3027 8321741 8322405 0.000000e+00 852.0
10 TraesCS1B01G018700 chr1A 85.125 800 94 16 2430 3208 8296594 8297389 0.000000e+00 795.0
11 TraesCS1B01G018700 chr1A 81.489 1021 131 31 2436 3402 8312538 8313554 0.000000e+00 785.0
12 TraesCS1B01G018700 chr1A 85.641 780 58 23 994 1754 8320682 8321426 0.000000e+00 771.0
13 TraesCS1B01G018700 chr1A 85.113 309 44 2 383 691 8310505 8310811 8.560000e-82 315.0
14 TraesCS1B01G018700 chr1A 75.840 476 89 19 1282 1738 8292719 8292251 6.900000e-53 219.0
15 TraesCS1B01G018700 chr1A 84.848 99 14 1 4003 4100 540324039 540323941 9.380000e-17 99.0
16 TraesCS1B01G018700 chr1D 92.472 704 50 1 1031 1734 6789453 6790153 0.000000e+00 1003.0
17 TraesCS1B01G018700 chr1D 84.102 1019 99 36 752 1742 6817184 6818167 0.000000e+00 926.0
18 TraesCS1B01G018700 chr1D 89.612 722 59 10 1045 1754 6864273 6864990 0.000000e+00 904.0
19 TraesCS1B01G018700 chr1D 84.582 934 116 15 2435 3344 6793963 6794892 0.000000e+00 902.0
20 TraesCS1B01G018700 chr1D 90.233 686 65 2 2362 3047 6865300 6865983 0.000000e+00 894.0
21 TraesCS1B01G018700 chr1D 83.996 956 104 29 119 1035 6788328 6789273 0.000000e+00 872.0
22 TraesCS1B01G018700 chr1D 89.689 611 63 0 2437 3047 6818453 6819063 0.000000e+00 780.0
23 TraesCS1B01G018700 chr1D 86.005 443 62 0 1292 1734 6732809 6732367 3.710000e-130 475.0
24 TraesCS1B01G018700 chr1D 84.013 319 47 4 384 700 6807948 6808264 1.850000e-78 303.0
25 TraesCS1B01G018700 chr1D 76.744 473 82 21 1282 1734 6787693 6787229 5.300000e-59 239.0
26 TraesCS1B01G018700 chr1D 79.528 254 52 0 1280 1533 307217809 307218062 9.050000e-42 182.0
27 TraesCS1B01G018700 chr1D 85.271 129 5 2 1 117 6788175 6788301 2.000000e-23 121.0
28 TraesCS1B01G018700 chr1D 85.859 99 13 1 4003 4100 445061743 445061645 2.020000e-18 104.0
29 TraesCS1B01G018700 chr4B 86.460 613 83 0 2435 3047 36663849 36663237 0.000000e+00 673.0
30 TraesCS1B01G018700 chr2D 89.776 313 22 5 1881 2183 643041972 643042284 3.840000e-105 392.0
31 TraesCS1B01G018700 chr2D 85.235 149 20 2 3885 4031 572692622 572692770 7.100000e-33 152.0
32 TraesCS1B01G018700 chr6B 89.968 309 22 5 1886 2186 43191589 43191282 1.380000e-104 390.0
33 TraesCS1B01G018700 chr6B 84.472 322 38 9 1870 2183 491659438 491659755 1.430000e-79 307.0
34 TraesCS1B01G018700 chr3D 89.610 308 23 4 1886 2184 601182784 601183091 2.310000e-102 383.0
35 TraesCS1B01G018700 chr3D 85.149 101 14 1 4001 4100 15216370 15216470 7.250000e-18 102.0
36 TraesCS1B01G018700 chr3D 87.059 85 4 2 3420 3497 603017487 603017403 5.640000e-14 89.8
37 TraesCS1B01G018700 chr3A 88.782 312 23 8 1883 2184 720855363 720855672 5.010000e-99 372.0
38 TraesCS1B01G018700 chr3A 80.717 223 35 7 3885 4100 750495655 750495434 2.540000e-37 167.0
39 TraesCS1B01G018700 chr3A 84.564 149 21 2 3885 4031 435805334 435805186 3.300000e-31 147.0
40 TraesCS1B01G018700 chr3A 78.733 221 40 6 3885 4100 612984638 612984420 1.540000e-29 141.0
41 TraesCS1B01G018700 chr3A 85.149 101 14 1 4001 4100 727233767 727233867 7.250000e-18 102.0
42 TraesCS1B01G018700 chr3A 85.882 85 5 3 3420 3497 151000076 151000160 2.630000e-12 84.2
43 TraesCS1B01G018700 chr5B 87.859 313 24 5 1886 2184 474525906 474525594 5.040000e-94 355.0
44 TraesCS1B01G018700 chr4A 87.580 314 28 7 1880 2183 535261075 535261387 1.810000e-93 353.0
45 TraesCS1B01G018700 chr4A 87.147 319 29 7 1877 2183 437044459 437044777 6.520000e-93 351.0
46 TraesCS1B01G018700 chr4A 85.870 92 6 4 3420 3504 271538764 271538673 1.570000e-14 91.6
47 TraesCS1B01G018700 chr2B 86.084 309 32 8 1886 2184 755145983 755146290 5.110000e-84 322.0
48 TraesCS1B01G018700 chr5D 91.150 113 9 1 3885 3996 442333605 442333493 7.100000e-33 152.0
49 TraesCS1B01G018700 chr5D 86.822 129 14 3 3873 3999 484944231 484944104 1.540000e-29 141.0
50 TraesCS1B01G018700 chr7B 88.710 124 12 2 3879 4000 3793799 3793922 2.550000e-32 150.0
51 TraesCS1B01G018700 chr4D 88.710 124 12 2 3885 4006 105237919 105237796 2.550000e-32 150.0
52 TraesCS1B01G018700 chr4D 86.408 103 12 2 4000 4100 16653136 16653034 1.200000e-20 111.0
53 TraesCS1B01G018700 chr4D 86.047 86 5 4 3419 3497 313923919 313923834 7.300000e-13 86.1
54 TraesCS1B01G018700 chr3B 86.364 132 16 2 3885 4014 61536217 61536348 4.270000e-30 143.0
55 TraesCS1B01G018700 chr3B 87.059 85 4 2 3420 3497 536991965 536991881 5.640000e-14 89.8
56 TraesCS1B01G018700 chr7A 82.759 116 18 2 3987 4100 387176706 387176591 7.250000e-18 102.0
57 TraesCS1B01G018700 chr7A 84.694 98 8 4 3420 3510 513541294 513541197 1.570000e-14 91.6
58 TraesCS1B01G018700 chr2A 87.097 93 5 4 3420 3505 691662315 691662407 9.380000e-17 99.0
59 TraesCS1B01G018700 chr2A 86.047 86 5 3 3419 3497 58864902 58864817 7.300000e-13 86.1
60 TraesCS1B01G018700 chr6D 85.417 96 6 4 3410 3498 53672144 53672050 4.360000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G018700 chr1B 8913121 8917220 4099 True 7572.000000 7572 100.000000 1 4100 1 chr1B.!!$R1 4099
1 TraesCS1B01G018700 chr1B 9261865 9265643 3778 False 1787.666667 2695 95.569000 1 3868 3 chr1B.!!$F2 3867
2 TraesCS1B01G018700 chr1B 9269670 9271258 1588 False 816.000000 902 86.958000 1045 3129 2 chr1B.!!$F3 2084
3 TraesCS1B01G018700 chr1A 8294849 8297389 2540 False 1145.500000 1496 85.645500 334 3208 2 chr1A.!!$F1 2874
4 TraesCS1B01G018700 chr1A 8320682 8322405 1723 False 811.500000 852 87.715500 994 3027 2 chr1A.!!$F3 2033
5 TraesCS1B01G018700 chr1A 8310505 8313554 3049 False 664.666667 894 83.393667 383 3402 3 chr1A.!!$F2 3019
6 TraesCS1B01G018700 chr1D 6864273 6865983 1710 False 899.000000 904 89.922500 1045 3047 2 chr1D.!!$F5 2002
7 TraesCS1B01G018700 chr1D 6817184 6819063 1879 False 853.000000 926 86.895500 752 3047 2 chr1D.!!$F4 2295
8 TraesCS1B01G018700 chr1D 6788175 6794892 6717 False 724.500000 1003 86.580250 1 3344 4 chr1D.!!$F3 3343
9 TraesCS1B01G018700 chr4B 36663237 36663849 612 True 673.000000 673 86.460000 2435 3047 1 chr4B.!!$R1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 884 0.107848 CGATGCCCGGAAAGTAGGTT 60.108 55.000 0.73 0.00 33.91 3.50 F
628 917 1.096416 GAGGGGCGAGGATATAGTCG 58.904 60.000 2.48 2.48 39.25 4.18 F
1201 2142 1.271871 CCAACCATCAGCCACCTGTTA 60.272 52.381 0.00 0.00 40.09 2.41 F
2017 4413 1.031571 ACGGCCACATGCATGTAAGG 61.032 55.000 30.92 27.55 43.89 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 4394 1.031571 CCTTACATGCATGTGGCCGT 61.032 55.000 36.72 15.6 43.89 5.68 R
2000 4396 1.406539 CTTCCTTACATGCATGTGGCC 59.593 52.381 36.72 0.0 43.89 5.36 R
2105 4501 1.549170 AGGCCACTAACAGTAACGGAG 59.451 52.381 5.01 0.0 0.00 4.63 R
3873 8117 0.032130 GACGAAGGGCGCAGATGATA 59.968 55.000 10.83 0.0 46.04 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
405 694 9.877178 ATGAATATACACTTCGTTTCTTCTCTT 57.123 29.630 0.00 0.00 0.00 2.85
408 697 6.771188 ATACACTTCGTTTCTTCTCTTGTG 57.229 37.500 0.00 0.00 0.00 3.33
479 768 2.639839 AGCACCATTGACAAGGACTAGT 59.360 45.455 0.42 0.00 0.00 2.57
555 844 2.096248 TGCGAAAAACCAAGGAGTTGT 58.904 42.857 0.00 0.00 30.95 3.32
563 852 0.182537 CCAAGGAGTTGTGGTCCACA 59.817 55.000 21.21 21.21 43.02 4.17
595 884 0.107848 CGATGCCCGGAAAGTAGGTT 60.108 55.000 0.73 0.00 33.91 3.50
628 917 1.096416 GAGGGGCGAGGATATAGTCG 58.904 60.000 2.48 2.48 39.25 4.18
791 1503 2.240279 AGGCGATGGAGGAGTACATAC 58.760 52.381 0.00 0.00 0.00 2.39
832 1553 2.297701 GGAGACAAAAGGCACAGAACA 58.702 47.619 0.00 0.00 0.00 3.18
955 1690 2.633488 GCCTGGAGCACCTTAGTTTAG 58.367 52.381 0.00 0.00 42.97 1.85
1035 1954 4.930696 TCCTGTCTATTCCACTACTCACA 58.069 43.478 0.00 0.00 0.00 3.58
1036 1955 4.950475 TCCTGTCTATTCCACTACTCACAG 59.050 45.833 0.00 0.00 0.00 3.66
1039 1958 5.084519 TGTCTATTCCACTACTCACAGGTT 58.915 41.667 0.00 0.00 0.00 3.50
1141 2063 2.444895 ATCCCTCTCCTCACGCCC 60.445 66.667 0.00 0.00 0.00 6.13
1156 2078 4.986467 CCCTACAAGATGGGCCAC 57.014 61.111 9.28 2.67 36.61 5.01
1201 2142 1.271871 CCAACCATCAGCCACCTGTTA 60.272 52.381 0.00 0.00 40.09 2.41
1214 2155 4.141574 GCCACCTGTTATACCTGTTCCATA 60.142 45.833 0.00 0.00 0.00 2.74
1401 2356 2.584418 CTCATCGCTGAGGCCACG 60.584 66.667 5.01 2.89 44.40 4.94
1452 2407 1.768482 CACCCCGGGGATATGGACA 60.768 63.158 46.68 0.00 38.96 4.02
1698 2653 1.645034 CTGCCATCATCGACGACTTT 58.355 50.000 0.00 0.00 0.00 2.66
1734 2689 4.501714 GCCATCGACGCCGGTACA 62.502 66.667 1.90 0.00 36.24 2.90
1794 3701 7.680442 AATTACTTTGTGCCAACAACTTTTT 57.320 28.000 0.00 0.00 45.91 1.94
1801 3708 3.063316 GTGCCAACAACTTTTTGCGAAAT 59.937 39.130 0.00 0.00 36.00 2.17
1802 3709 3.308323 TGCCAACAACTTTTTGCGAAATC 59.692 39.130 0.00 0.00 36.00 2.17
1804 3711 4.201763 GCCAACAACTTTTTGCGAAATCAA 60.202 37.500 0.00 0.00 36.00 2.57
1806 3713 6.485393 CCAACAACTTTTTGCGAAATCAATT 58.515 32.000 0.00 0.00 36.00 2.32
1808 3715 7.793427 CCAACAACTTTTTGCGAAATCAATTAG 59.207 33.333 0.00 0.00 36.00 1.73
1900 4286 3.953542 AATTGTACTCCCTCCATTCCC 57.046 47.619 0.00 0.00 0.00 3.97
1901 4287 2.661176 TTGTACTCCCTCCATTCCCT 57.339 50.000 0.00 0.00 0.00 4.20
1902 4288 2.661176 TGTACTCCCTCCATTCCCTT 57.339 50.000 0.00 0.00 0.00 3.95
1904 4290 4.295905 TGTACTCCCTCCATTCCCTTAT 57.704 45.455 0.00 0.00 0.00 1.73
1906 4292 5.152934 TGTACTCCCTCCATTCCCTTATAC 58.847 45.833 0.00 0.00 0.00 1.47
1926 4312 6.909550 ATACAAGGCCACAAACTCAAATTA 57.090 33.333 5.01 0.00 0.00 1.40
1929 4325 4.853924 AGGCCACAAACTCAAATTACAG 57.146 40.909 5.01 0.00 0.00 2.74
1933 4329 5.458015 GCCACAAACTCAAATTACAGGTAC 58.542 41.667 0.00 0.00 0.00 3.34
1937 4333 7.119262 CCACAAACTCAAATTACAGGTACCTAG 59.881 40.741 15.80 11.72 0.00 3.02
1938 4334 7.119262 CACAAACTCAAATTACAGGTACCTAGG 59.881 40.741 15.80 7.41 0.00 3.02
1942 4338 8.439964 ACTCAAATTACAGGTACCTAGGTAAA 57.560 34.615 23.40 13.70 31.86 2.01
1944 4340 9.901172 CTCAAATTACAGGTACCTAGGTAAAAT 57.099 33.333 23.40 13.98 31.86 1.82
1946 4342 9.901172 CAAATTACAGGTACCTAGGTAAAATCT 57.099 33.333 23.40 14.63 31.86 2.40
1951 4347 8.849543 ACAGGTACCTAGGTAAAATCTAATGA 57.150 34.615 23.40 0.00 31.86 2.57
1953 4349 8.925338 CAGGTACCTAGGTAAAATCTAATGACT 58.075 37.037 23.40 4.86 31.86 3.41
1962 4358 9.515226 AGGTAAAATCTAATGACTACTTTGCAA 57.485 29.630 0.00 0.00 0.00 4.08
1963 4359 9.774742 GGTAAAATCTAATGACTACTTTGCAAG 57.225 33.333 0.00 0.00 0.00 4.01
1964 4360 9.278734 GTAAAATCTAATGACTACTTTGCAAGC 57.721 33.333 0.00 0.00 0.00 4.01
1965 4361 6.442513 AATCTAATGACTACTTTGCAAGCC 57.557 37.500 0.00 0.00 0.00 4.35
1966 4362 4.905429 TCTAATGACTACTTTGCAAGCCA 58.095 39.130 0.00 0.00 0.00 4.75
1968 4364 3.923017 ATGACTACTTTGCAAGCCAAC 57.077 42.857 0.00 0.00 31.97 3.77
1969 4365 2.930950 TGACTACTTTGCAAGCCAACT 58.069 42.857 0.00 0.00 31.97 3.16
1970 4366 3.287222 TGACTACTTTGCAAGCCAACTT 58.713 40.909 0.00 0.00 36.19 2.66
1971 4367 3.699038 TGACTACTTTGCAAGCCAACTTT 59.301 39.130 0.00 0.00 32.29 2.66
1972 4368 4.159506 TGACTACTTTGCAAGCCAACTTTT 59.840 37.500 0.00 0.00 32.29 2.27
1973 4369 4.682787 ACTACTTTGCAAGCCAACTTTTC 58.317 39.130 0.00 0.00 32.29 2.29
1974 4370 3.893326 ACTTTGCAAGCCAACTTTTCT 57.107 38.095 0.00 0.00 32.29 2.52
1975 4371 4.206477 ACTTTGCAAGCCAACTTTTCTT 57.794 36.364 0.00 0.00 32.29 2.52
1979 4375 3.784338 TGCAAGCCAACTTTTCTTCTTG 58.216 40.909 0.00 0.00 32.29 3.02
1980 4376 3.195396 TGCAAGCCAACTTTTCTTCTTGT 59.805 39.130 0.00 0.00 34.90 3.16
1981 4377 4.183865 GCAAGCCAACTTTTCTTCTTGTT 58.816 39.130 0.00 0.00 34.90 2.83
1983 4379 5.985530 GCAAGCCAACTTTTCTTCTTGTTAT 59.014 36.000 0.00 0.00 34.90 1.89
1984 4380 6.144563 GCAAGCCAACTTTTCTTCTTGTTATC 59.855 38.462 0.00 0.00 34.90 1.75
1985 4381 7.428826 CAAGCCAACTTTTCTTCTTGTTATCT 58.571 34.615 0.00 0.00 32.29 1.98
1986 4382 6.974965 AGCCAACTTTTCTTCTTGTTATCTG 58.025 36.000 0.00 0.00 0.00 2.90
1987 4383 6.772716 AGCCAACTTTTCTTCTTGTTATCTGA 59.227 34.615 0.00 0.00 0.00 3.27
1989 4385 7.041098 GCCAACTTTTCTTCTTGTTATCTGAGA 60.041 37.037 0.00 0.00 0.00 3.27
1990 4386 9.007901 CCAACTTTTCTTCTTGTTATCTGAGAT 57.992 33.333 0.00 0.00 0.00 2.75
1993 4389 9.956640 ACTTTTCTTCTTGTTATCTGAGATCAT 57.043 29.630 0.00 0.00 0.00 2.45
2001 4397 9.914131 TCTTGTTATCTGAGATCATTAATACGG 57.086 33.333 0.00 0.00 0.00 4.02
2002 4398 8.534333 TTGTTATCTGAGATCATTAATACGGC 57.466 34.615 0.00 0.00 0.00 5.68
2003 4399 7.097192 TGTTATCTGAGATCATTAATACGGCC 58.903 38.462 0.00 0.00 0.00 6.13
2004 4400 5.745312 ATCTGAGATCATTAATACGGCCA 57.255 39.130 2.24 0.00 0.00 5.36
2005 4401 4.883083 TCTGAGATCATTAATACGGCCAC 58.117 43.478 2.24 0.00 0.00 5.01
2006 4402 4.343814 TCTGAGATCATTAATACGGCCACA 59.656 41.667 2.24 0.00 0.00 4.17
2007 4403 5.012046 TCTGAGATCATTAATACGGCCACAT 59.988 40.000 2.24 0.00 0.00 3.21
2008 4404 4.996758 TGAGATCATTAATACGGCCACATG 59.003 41.667 2.24 0.00 0.00 3.21
2009 4405 3.753272 AGATCATTAATACGGCCACATGC 59.247 43.478 2.24 0.00 40.16 4.06
2010 4406 2.924421 TCATTAATACGGCCACATGCA 58.076 42.857 2.24 0.00 43.89 3.96
2011 4407 3.485394 TCATTAATACGGCCACATGCAT 58.515 40.909 2.24 0.00 43.89 3.96
2012 4408 3.252944 TCATTAATACGGCCACATGCATG 59.747 43.478 25.09 25.09 43.89 4.06
2013 4409 2.340210 TAATACGGCCACATGCATGT 57.660 45.000 26.61 26.61 43.89 3.21
2015 4411 2.340210 ATACGGCCACATGCATGTAA 57.660 45.000 30.92 13.09 43.89 2.41
2016 4412 1.662517 TACGGCCACATGCATGTAAG 58.337 50.000 30.92 24.58 43.89 2.34
2017 4413 1.031571 ACGGCCACATGCATGTAAGG 61.032 55.000 30.92 27.55 43.89 2.69
2019 4415 1.473258 GGCCACATGCATGTAAGGAA 58.527 50.000 30.63 0.00 43.89 3.36
2020 4416 1.406539 GGCCACATGCATGTAAGGAAG 59.593 52.381 30.63 19.17 43.89 3.46
2021 4417 1.406539 GCCACATGCATGTAAGGAAGG 59.593 52.381 30.63 26.08 39.39 3.46
2022 4418 2.945440 GCCACATGCATGTAAGGAAGGA 60.945 50.000 30.63 0.00 39.39 3.36
2023 4419 3.355378 CCACATGCATGTAAGGAAGGAA 58.645 45.455 30.92 0.00 39.39 3.36
2025 4421 4.202080 CCACATGCATGTAAGGAAGGAATG 60.202 45.833 30.92 14.22 39.39 2.67
2026 4422 4.641541 CACATGCATGTAAGGAAGGAATGA 59.358 41.667 30.92 0.00 39.39 2.57
2027 4423 4.885907 ACATGCATGTAAGGAAGGAATGAG 59.114 41.667 30.50 0.00 39.68 2.90
2028 4424 4.842531 TGCATGTAAGGAAGGAATGAGA 57.157 40.909 0.00 0.00 0.00 3.27
2030 4426 5.188434 TGCATGTAAGGAAGGAATGAGAAG 58.812 41.667 0.00 0.00 0.00 2.85
2031 4427 4.578105 GCATGTAAGGAAGGAATGAGAAGG 59.422 45.833 0.00 0.00 0.00 3.46
2033 4429 6.418101 CATGTAAGGAAGGAATGAGAAGGAA 58.582 40.000 0.00 0.00 0.00 3.36
2034 4430 6.054860 TGTAAGGAAGGAATGAGAAGGAAG 57.945 41.667 0.00 0.00 0.00 3.46
2035 4431 5.548056 TGTAAGGAAGGAATGAGAAGGAAGT 59.452 40.000 0.00 0.00 0.00 3.01
2037 4433 5.948742 AGGAAGGAATGAGAAGGAAGTAG 57.051 43.478 0.00 0.00 0.00 2.57
2038 4434 4.163268 AGGAAGGAATGAGAAGGAAGTAGC 59.837 45.833 0.00 0.00 0.00 3.58
2039 4435 4.080863 GGAAGGAATGAGAAGGAAGTAGCA 60.081 45.833 0.00 0.00 0.00 3.49
2040 4436 4.479786 AGGAATGAGAAGGAAGTAGCAC 57.520 45.455 0.00 0.00 0.00 4.40
2041 4437 3.840666 AGGAATGAGAAGGAAGTAGCACA 59.159 43.478 0.00 0.00 0.00 4.57
2042 4438 4.081198 AGGAATGAGAAGGAAGTAGCACAG 60.081 45.833 0.00 0.00 0.00 3.66
2043 4439 4.323104 GGAATGAGAAGGAAGTAGCACAGT 60.323 45.833 0.00 0.00 0.00 3.55
2044 4440 3.667497 TGAGAAGGAAGTAGCACAGTG 57.333 47.619 0.00 0.00 0.00 3.66
2045 4441 2.965831 TGAGAAGGAAGTAGCACAGTGT 59.034 45.455 1.61 0.00 0.00 3.55
2046 4442 3.388024 TGAGAAGGAAGTAGCACAGTGTT 59.612 43.478 1.61 0.00 0.00 3.32
2049 4445 6.115448 AGAAGGAAGTAGCACAGTGTTATT 57.885 37.500 1.61 0.00 0.00 1.40
2050 4446 7.039293 TGAGAAGGAAGTAGCACAGTGTTATTA 60.039 37.037 1.61 0.00 0.00 0.98
2051 4447 7.852263 AGAAGGAAGTAGCACAGTGTTATTAT 58.148 34.615 1.61 0.00 0.00 1.28
2052 4448 7.766278 AGAAGGAAGTAGCACAGTGTTATTATG 59.234 37.037 1.61 0.00 0.00 1.90
2054 4450 7.042335 AGGAAGTAGCACAGTGTTATTATGAC 58.958 38.462 1.61 0.00 0.00 3.06
2055 4451 7.042335 GGAAGTAGCACAGTGTTATTATGACT 58.958 38.462 1.61 0.00 0.00 3.41
2056 4452 8.195436 GGAAGTAGCACAGTGTTATTATGACTA 58.805 37.037 1.61 0.00 0.00 2.59
2057 4453 8.928270 AAGTAGCACAGTGTTATTATGACTAC 57.072 34.615 1.61 2.22 32.42 2.73
2058 4454 8.063200 AGTAGCACAGTGTTATTATGACTACA 57.937 34.615 1.61 0.00 33.54 2.74
2059 4455 8.696374 AGTAGCACAGTGTTATTATGACTACAT 58.304 33.333 1.61 0.00 40.16 2.29
2060 4456 7.776933 AGCACAGTGTTATTATGACTACATG 57.223 36.000 1.61 0.00 37.87 3.21
2061 4457 6.258727 AGCACAGTGTTATTATGACTACATGC 59.741 38.462 1.61 0.00 37.87 4.06
2063 4459 7.254898 GCACAGTGTTATTATGACTACATGCAT 60.255 37.037 1.61 0.00 37.87 3.96
2064 4460 8.066000 CACAGTGTTATTATGACTACATGCATG 58.934 37.037 25.09 25.09 37.87 4.06
2066 4462 6.767423 AGTGTTATTATGACTACATGCATGCA 59.233 34.615 26.53 25.04 37.87 3.96
2067 4463 7.282901 AGTGTTATTATGACTACATGCATGCAA 59.717 33.333 26.68 13.91 37.87 4.08
2068 4464 7.588854 GTGTTATTATGACTACATGCATGCAAG 59.411 37.037 26.68 23.45 37.87 4.01
2069 4465 7.282901 TGTTATTATGACTACATGCATGCAAGT 59.717 33.333 29.11 29.11 37.87 3.16
2070 4466 8.773645 GTTATTATGACTACATGCATGCAAGTA 58.226 33.333 28.33 28.33 37.87 2.24
2071 4467 7.991084 ATTATGACTACATGCATGCAAGTAT 57.009 32.000 29.78 20.73 37.87 2.12
2072 4468 7.806409 TTATGACTACATGCATGCAAGTATT 57.194 32.000 29.78 25.52 37.87 1.89
2073 4469 8.900983 TTATGACTACATGCATGCAAGTATTA 57.099 30.769 29.78 20.56 37.87 0.98
2077 4473 9.336171 TGACTACATGCATGCAAGTATTAAATA 57.664 29.630 29.78 12.93 31.16 1.40
2082 4478 9.304731 ACATGCATGCAAGTATTAAATAAGTTG 57.695 29.630 25.90 14.84 0.00 3.16
2083 4479 7.754069 TGCATGCAAGTATTAAATAAGTTGC 57.246 32.000 20.30 15.92 37.42 4.17
2085 4481 7.488792 TGCATGCAAGTATTAAATAAGTTGCTG 59.511 33.333 20.30 17.18 37.62 4.41
2086 4482 7.043192 GCATGCAAGTATTAAATAAGTTGCTGG 60.043 37.037 14.21 15.46 37.62 4.85
2093 4489 9.461312 AGTATTAAATAAGTTGCTGGAACATCA 57.539 29.630 14.52 0.00 38.20 3.07
2103 4499 8.314143 AGTTGCTGGAACATCATTAAATTTTG 57.686 30.769 14.52 0.00 38.20 2.44
2105 4501 5.642919 TGCTGGAACATCATTAAATTTTGCC 59.357 36.000 0.00 0.00 38.20 4.52
2106 4502 5.876460 GCTGGAACATCATTAAATTTTGCCT 59.124 36.000 0.00 0.00 38.20 4.75
2107 4503 6.036408 GCTGGAACATCATTAAATTTTGCCTC 59.964 38.462 0.00 0.00 38.20 4.70
2109 4505 5.519927 GGAACATCATTAAATTTTGCCTCCG 59.480 40.000 0.00 0.00 0.00 4.63
2110 4506 5.659440 ACATCATTAAATTTTGCCTCCGT 57.341 34.783 0.00 0.00 0.00 4.69
2111 4507 6.036577 ACATCATTAAATTTTGCCTCCGTT 57.963 33.333 0.00 0.00 0.00 4.44
2112 4508 7.164230 ACATCATTAAATTTTGCCTCCGTTA 57.836 32.000 0.00 0.00 0.00 3.18
2113 4509 7.033185 ACATCATTAAATTTTGCCTCCGTTAC 58.967 34.615 0.00 0.00 0.00 2.50
2114 4510 6.827586 TCATTAAATTTTGCCTCCGTTACT 57.172 33.333 0.00 0.00 0.00 2.24
2115 4511 6.616947 TCATTAAATTTTGCCTCCGTTACTG 58.383 36.000 0.00 0.00 0.00 2.74
2117 4513 4.929819 AAATTTTGCCTCCGTTACTGTT 57.070 36.364 0.00 0.00 0.00 3.16
2118 4514 7.507733 TTAAATTTTGCCTCCGTTACTGTTA 57.492 32.000 0.00 0.00 0.00 2.41
2119 4515 5.622770 AATTTTGCCTCCGTTACTGTTAG 57.377 39.130 0.00 0.00 0.00 2.34
2120 4516 3.756933 TTTGCCTCCGTTACTGTTAGT 57.243 42.857 0.00 0.00 0.00 2.24
2122 4518 1.274167 TGCCTCCGTTACTGTTAGTGG 59.726 52.381 0.00 0.00 0.00 4.00
2123 4519 2.005560 GCCTCCGTTACTGTTAGTGGC 61.006 57.143 0.00 0.00 0.00 5.01
2124 4520 1.405121 CCTCCGTTACTGTTAGTGGCC 60.405 57.143 0.00 0.00 0.00 5.36
2125 4521 1.549170 CTCCGTTACTGTTAGTGGCCT 59.451 52.381 3.32 0.00 0.00 5.19
2126 4522 1.972795 TCCGTTACTGTTAGTGGCCTT 59.027 47.619 3.32 0.00 0.00 4.35
2127 4523 2.073816 CCGTTACTGTTAGTGGCCTTG 58.926 52.381 3.32 0.00 0.00 3.61
2128 4524 2.549349 CCGTTACTGTTAGTGGCCTTGT 60.549 50.000 3.32 0.00 0.00 3.16
2129 4525 3.306225 CCGTTACTGTTAGTGGCCTTGTA 60.306 47.826 3.32 0.00 0.00 2.41
2131 4527 5.394443 CCGTTACTGTTAGTGGCCTTGTATA 60.394 44.000 3.32 0.00 0.00 1.47
2132 4528 5.747197 CGTTACTGTTAGTGGCCTTGTATAG 59.253 44.000 3.32 0.00 0.00 1.31
2133 4529 6.405065 CGTTACTGTTAGTGGCCTTGTATAGA 60.405 42.308 3.32 0.00 0.00 1.98
2134 4530 7.498443 GTTACTGTTAGTGGCCTTGTATAGAT 58.502 38.462 3.32 0.00 0.00 1.98
2135 4531 5.918608 ACTGTTAGTGGCCTTGTATAGATG 58.081 41.667 3.32 0.00 0.00 2.90
2136 4532 4.703897 TGTTAGTGGCCTTGTATAGATGC 58.296 43.478 3.32 0.00 0.00 3.91
2138 4534 3.931907 AGTGGCCTTGTATAGATGCAA 57.068 42.857 3.32 0.00 0.00 4.08
2139 4535 4.235079 AGTGGCCTTGTATAGATGCAAA 57.765 40.909 3.32 0.00 32.12 3.68
2140 4536 4.599041 AGTGGCCTTGTATAGATGCAAAA 58.401 39.130 3.32 0.00 32.12 2.44
2142 4538 5.068198 AGTGGCCTTGTATAGATGCAAAATG 59.932 40.000 3.32 0.00 32.12 2.32
2144 4540 6.039270 GTGGCCTTGTATAGATGCAAAATGTA 59.961 38.462 3.32 0.00 32.12 2.29
2145 4541 6.777091 TGGCCTTGTATAGATGCAAAATGTAT 59.223 34.615 3.32 0.00 32.12 2.29
2146 4542 7.287466 TGGCCTTGTATAGATGCAAAATGTATT 59.713 33.333 3.32 0.00 32.12 1.89
2147 4543 8.143835 GGCCTTGTATAGATGCAAAATGTATTT 58.856 33.333 0.00 0.00 32.12 1.40
2148 4544 9.533253 GCCTTGTATAGATGCAAAATGTATTTT 57.467 29.630 0.00 0.00 40.37 1.82
2157 4553 9.533253 AGATGCAAAATGTATTTTTATAGTGGC 57.467 29.630 0.00 0.97 37.86 5.01
2158 4554 8.661352 ATGCAAAATGTATTTTTATAGTGGCC 57.339 30.769 0.00 0.00 37.86 5.36
2159 4555 7.846066 TGCAAAATGTATTTTTATAGTGGCCT 58.154 30.769 3.32 0.00 37.86 5.19
2160 4556 8.317679 TGCAAAATGTATTTTTATAGTGGCCTT 58.682 29.630 3.32 0.00 37.86 4.35
2161 4557 8.603181 GCAAAATGTATTTTTATAGTGGCCTTG 58.397 33.333 3.32 0.00 37.86 3.61
2162 4558 9.651913 CAAAATGTATTTTTATAGTGGCCTTGT 57.348 29.630 3.32 0.00 37.86 3.16
2293 5963 5.410067 CCTTTAGGGTACAAATTGCACATG 58.590 41.667 0.00 0.00 0.00 3.21
2808 6991 0.832135 ACAGAGAGGCGTTCAAGGGA 60.832 55.000 0.00 0.00 0.00 4.20
2810 6993 0.610687 AGAGAGGCGTTCAAGGGAAG 59.389 55.000 0.00 0.00 32.62 3.46
2880 7063 3.613527 GAGGGGTACACGGACCTC 58.386 66.667 0.00 0.00 42.31 3.85
3057 7244 1.734465 CTTCTTTCTTACCGCTGGCTG 59.266 52.381 0.00 0.00 0.00 4.85
3132 7338 3.012518 ACGATAATTGCTGAAGCTGCTT 58.987 40.909 15.92 15.92 42.66 3.91
3135 7341 5.123820 ACGATAATTGCTGAAGCTGCTTAAA 59.876 36.000 15.95 8.15 42.66 1.52
3146 7352 7.061557 GCTGAAGCTGCTTAAATTTTTACAGAG 59.938 37.037 15.95 6.96 38.21 3.35
3171 7402 6.616947 ACATTACTCTCTCTTTCAAGTCTCG 58.383 40.000 0.00 0.00 0.00 4.04
3377 7620 9.474920 GATATCTCACTCCTTGTCATTTCTAAG 57.525 37.037 0.00 0.00 0.00 2.18
3535 7779 5.920193 ATCATATTGTTGACCAAACCCAG 57.080 39.130 0.00 0.00 38.06 4.45
3537 7781 1.786937 ATTGTTGACCAAACCCAGCA 58.213 45.000 0.00 0.00 38.06 4.41
3568 7812 8.376028 CGTTTTCGTCAAAGGGATACATATCCT 61.376 40.741 15.90 2.00 43.61 3.24
3592 7836 1.450312 GAATCGGGCCACTCCACAG 60.450 63.158 4.39 0.00 36.21 3.66
3614 7858 7.335171 CACAGAGTCATCCACAAATTCAAGATA 59.665 37.037 0.00 0.00 0.00 1.98
3682 7926 9.216117 GTAAGCTATGTAAAGAAAAGGTCTTCA 57.784 33.333 0.00 0.00 46.36 3.02
3717 7961 0.744874 TTGAGAAGGCCTACGATCGG 59.255 55.000 20.98 2.45 0.00 4.18
3749 7993 5.417580 TGTGGTTTTTGCTAAGTCACTCTTT 59.582 36.000 9.91 0.00 37.56 2.52
3820 8064 2.545969 TGTCCTAAACACTGCCCCA 58.454 52.632 0.00 0.00 31.20 4.96
3829 8073 0.035056 ACACTGCCCCAGCTTATCAC 60.035 55.000 0.00 0.00 40.80 3.06
3859 8103 8.760980 ATCTAACCTATGGCTATCATCTACTC 57.239 38.462 0.00 0.00 37.30 2.59
3860 8104 7.934313 TCTAACCTATGGCTATCATCTACTCT 58.066 38.462 0.00 0.00 37.30 3.24
3862 8106 5.515106 ACCTATGGCTATCATCTACTCTCC 58.485 45.833 0.00 0.00 37.30 3.71
3864 8108 4.690767 ATGGCTATCATCTACTCTCCCT 57.309 45.455 0.00 0.00 0.00 4.20
3865 8109 4.040936 TGGCTATCATCTACTCTCCCTC 57.959 50.000 0.00 0.00 0.00 4.30
3866 8110 3.245443 TGGCTATCATCTACTCTCCCTCC 60.245 52.174 0.00 0.00 0.00 4.30
3867 8111 3.013921 GCTATCATCTACTCTCCCTCCG 58.986 54.545 0.00 0.00 0.00 4.63
3868 8112 3.307833 GCTATCATCTACTCTCCCTCCGA 60.308 52.174 0.00 0.00 0.00 4.55
3869 8113 4.627741 GCTATCATCTACTCTCCCTCCGAT 60.628 50.000 0.00 0.00 0.00 4.18
3870 8114 3.147553 TCATCTACTCTCCCTCCGATG 57.852 52.381 0.00 0.00 0.00 3.84
3871 8115 2.166829 CATCTACTCTCCCTCCGATGG 58.833 57.143 0.00 0.00 0.00 3.51
3872 8116 0.178987 TCTACTCTCCCTCCGATGGC 60.179 60.000 0.00 0.00 0.00 4.40
3873 8117 0.178975 CTACTCTCCCTCCGATGGCT 60.179 60.000 0.00 0.00 0.00 4.75
3874 8118 1.074084 CTACTCTCCCTCCGATGGCTA 59.926 57.143 0.00 0.00 0.00 3.93
3875 8119 0.485099 ACTCTCCCTCCGATGGCTAT 59.515 55.000 0.00 0.00 0.00 2.97
3876 8120 1.181786 CTCTCCCTCCGATGGCTATC 58.818 60.000 0.00 0.00 0.00 2.08
3877 8121 0.482887 TCTCCCTCCGATGGCTATCA 59.517 55.000 10.94 0.00 32.67 2.15
3878 8122 1.077828 TCTCCCTCCGATGGCTATCAT 59.922 52.381 10.94 0.00 39.13 2.45
3879 8123 1.480137 CTCCCTCCGATGGCTATCATC 59.520 57.143 10.94 1.20 46.63 2.92
3885 8129 2.464682 GATGGCTATCATCTGCGCC 58.535 57.895 4.18 0.00 46.59 6.53
3886 8130 1.002868 ATGGCTATCATCTGCGCCC 60.003 57.895 4.18 0.00 41.80 6.13
3887 8131 1.486997 ATGGCTATCATCTGCGCCCT 61.487 55.000 4.18 0.00 41.80 5.19
3888 8132 1.072159 GGCTATCATCTGCGCCCTT 59.928 57.895 4.18 0.00 36.56 3.95
3889 8133 0.952984 GGCTATCATCTGCGCCCTTC 60.953 60.000 4.18 0.00 36.56 3.46
3890 8134 1.287730 GCTATCATCTGCGCCCTTCG 61.288 60.000 4.18 0.00 42.12 3.79
3891 8135 0.032678 CTATCATCTGCGCCCTTCGT 59.967 55.000 4.18 0.00 41.07 3.85
3892 8136 0.032130 TATCATCTGCGCCCTTCGTC 59.968 55.000 4.18 0.00 41.07 4.20
3893 8137 2.650813 ATCATCTGCGCCCTTCGTCC 62.651 60.000 4.18 0.00 41.07 4.79
3894 8138 4.514577 ATCTGCGCCCTTCGTCCG 62.515 66.667 4.18 0.00 41.07 4.79
3896 8140 4.735132 CTGCGCCCTTCGTCCGAA 62.735 66.667 4.18 1.81 41.07 4.30
3897 8141 4.302509 TGCGCCCTTCGTCCGAAA 62.303 61.111 4.18 0.00 41.07 3.46
3898 8142 3.045492 GCGCCCTTCGTCCGAAAA 61.045 61.111 0.00 0.00 41.07 2.29
3899 8143 2.396157 GCGCCCTTCGTCCGAAAAT 61.396 57.895 0.00 0.00 41.07 1.82
3900 8144 1.085501 GCGCCCTTCGTCCGAAAATA 61.086 55.000 0.00 0.00 41.07 1.40
3901 8145 0.648958 CGCCCTTCGTCCGAAAATAC 59.351 55.000 3.52 0.00 33.34 1.89
3902 8146 1.738030 CGCCCTTCGTCCGAAAATACT 60.738 52.381 3.52 0.00 33.34 2.12
3903 8147 2.353323 GCCCTTCGTCCGAAAATACTT 58.647 47.619 3.52 0.00 33.34 2.24
3904 8148 2.095372 GCCCTTCGTCCGAAAATACTTG 59.905 50.000 3.52 0.00 33.34 3.16
3905 8149 3.332034 CCCTTCGTCCGAAAATACTTGT 58.668 45.455 3.52 0.00 33.34 3.16
3906 8150 4.497300 CCCTTCGTCCGAAAATACTTGTA 58.503 43.478 3.52 0.00 33.34 2.41
3907 8151 4.931002 CCCTTCGTCCGAAAATACTTGTAA 59.069 41.667 3.52 0.00 33.34 2.41
3908 8152 5.409214 CCCTTCGTCCGAAAATACTTGTAAA 59.591 40.000 3.52 0.00 33.34 2.01
3909 8153 6.401796 CCCTTCGTCCGAAAATACTTGTAAAG 60.402 42.308 3.52 0.00 41.00 1.85
3910 8154 6.366877 CCTTCGTCCGAAAATACTTGTAAAGA 59.633 38.462 3.52 0.00 38.94 2.52
3911 8155 7.095523 CCTTCGTCCGAAAATACTTGTAAAGAA 60.096 37.037 3.52 0.00 38.94 2.52
3912 8156 8.277713 CTTCGTCCGAAAATACTTGTAAAGAAA 58.722 33.333 3.52 0.00 38.94 2.52
3929 8173 9.182214 TGTAAAGAAATAGATGTACCTAGACGT 57.818 33.333 0.00 0.00 0.00 4.34
3940 8184 9.406113 AGATGTACCTAGACGTATTTTAGTTCT 57.594 33.333 0.00 0.00 0.00 3.01
3943 8187 9.890629 TGTACCTAGACGTATTTTAGTTCTAGA 57.109 33.333 5.67 0.00 0.00 2.43
3969 8213 9.887862 ATACATCCATTTTTATCCATTTCTCCT 57.112 29.630 0.00 0.00 0.00 3.69
3971 8215 9.136323 ACATCCATTTTTATCCATTTCTCCTAC 57.864 33.333 0.00 0.00 0.00 3.18
3972 8216 9.135189 CATCCATTTTTATCCATTTCTCCTACA 57.865 33.333 0.00 0.00 0.00 2.74
3973 8217 9.713684 ATCCATTTTTATCCATTTCTCCTACAA 57.286 29.630 0.00 0.00 0.00 2.41
3974 8218 9.540538 TCCATTTTTATCCATTTCTCCTACAAA 57.459 29.630 0.00 0.00 0.00 2.83
3983 8227 8.305046 TCCATTTCTCCTACAAATATTTTGGG 57.695 34.615 0.00 2.74 0.00 4.12
3984 8228 8.119246 TCCATTTCTCCTACAAATATTTTGGGA 58.881 33.333 0.00 6.62 0.00 4.37
3985 8229 8.927411 CCATTTCTCCTACAAATATTTTGGGAT 58.073 33.333 12.47 1.29 0.00 3.85
3986 8230 9.754382 CATTTCTCCTACAAATATTTTGGGATG 57.246 33.333 12.47 7.33 0.00 3.51
3987 8231 7.896383 TTCTCCTACAAATATTTTGGGATGG 57.104 36.000 12.47 5.21 0.00 3.51
3988 8232 7.219601 TCTCCTACAAATATTTTGGGATGGA 57.780 36.000 12.47 8.08 0.00 3.41
3989 8233 7.290061 TCTCCTACAAATATTTTGGGATGGAG 58.710 38.462 17.04 17.04 37.95 3.86
3990 8234 6.372931 TCCTACAAATATTTTGGGATGGAGG 58.627 40.000 7.32 7.32 39.75 4.30
3991 8235 5.539955 CCTACAAATATTTTGGGATGGAGGG 59.460 44.000 6.07 0.00 35.62 4.30
3992 8236 5.219468 ACAAATATTTTGGGATGGAGGGA 57.781 39.130 0.00 0.00 0.00 4.20
3993 8237 5.211201 ACAAATATTTTGGGATGGAGGGAG 58.789 41.667 0.00 0.00 0.00 4.30
3994 8238 5.211201 CAAATATTTTGGGATGGAGGGAGT 58.789 41.667 0.00 0.00 0.00 3.85
3995 8239 6.068498 ACAAATATTTTGGGATGGAGGGAGTA 60.068 38.462 0.00 0.00 0.00 2.59
3996 8240 3.953542 ATTTTGGGATGGAGGGAGTAC 57.046 47.619 0.00 0.00 0.00 2.73
3997 8241 2.352561 TTTGGGATGGAGGGAGTACA 57.647 50.000 0.00 0.00 0.00 2.90
3998 8242 2.587060 TTGGGATGGAGGGAGTACAT 57.413 50.000 0.00 0.00 0.00 2.29
3999 8243 1.806496 TGGGATGGAGGGAGTACATG 58.194 55.000 0.00 0.00 0.00 3.21
4000 8244 1.009552 TGGGATGGAGGGAGTACATGT 59.990 52.381 2.69 2.69 0.00 3.21
4001 8245 1.694696 GGGATGGAGGGAGTACATGTC 59.305 57.143 0.00 0.00 0.00 3.06
4002 8246 2.683768 GGATGGAGGGAGTACATGTCT 58.316 52.381 0.00 0.00 0.00 3.41
4003 8247 3.041946 GGATGGAGGGAGTACATGTCTT 58.958 50.000 0.00 0.00 0.00 3.01
4004 8248 3.456277 GGATGGAGGGAGTACATGTCTTT 59.544 47.826 0.00 0.00 0.00 2.52
4005 8249 4.080299 GGATGGAGGGAGTACATGTCTTTT 60.080 45.833 0.00 0.00 0.00 2.27
4006 8250 4.286297 TGGAGGGAGTACATGTCTTTTG 57.714 45.455 0.00 0.00 0.00 2.44
4007 8251 3.009033 TGGAGGGAGTACATGTCTTTTGG 59.991 47.826 0.00 0.00 0.00 3.28
4008 8252 3.263425 GGAGGGAGTACATGTCTTTTGGA 59.737 47.826 0.00 0.00 0.00 3.53
4009 8253 4.508662 GAGGGAGTACATGTCTTTTGGAG 58.491 47.826 0.00 0.00 0.00 3.86
4010 8254 4.168101 AGGGAGTACATGTCTTTTGGAGA 58.832 43.478 0.00 0.00 0.00 3.71
4011 8255 4.785376 AGGGAGTACATGTCTTTTGGAGAT 59.215 41.667 0.00 0.00 36.61 2.75
4012 8256 5.251700 AGGGAGTACATGTCTTTTGGAGATT 59.748 40.000 0.00 0.00 36.61 2.40
4013 8257 5.946377 GGGAGTACATGTCTTTTGGAGATTT 59.054 40.000 0.00 0.00 36.61 2.17
4014 8258 6.434340 GGGAGTACATGTCTTTTGGAGATTTT 59.566 38.462 0.00 0.00 36.61 1.82
4015 8259 7.610305 GGGAGTACATGTCTTTTGGAGATTTTA 59.390 37.037 0.00 0.00 36.61 1.52
4016 8260 9.010029 GGAGTACATGTCTTTTGGAGATTTTAA 57.990 33.333 0.00 0.00 36.61 1.52
4026 8270 9.691362 TCTTTTGGAGATTTTAATACAAACTGC 57.309 29.630 0.00 0.00 0.00 4.40
4027 8271 9.474920 CTTTTGGAGATTTTAATACAAACTGCA 57.525 29.630 0.00 0.00 0.00 4.41
4028 8272 9.995003 TTTTGGAGATTTTAATACAAACTGCAT 57.005 25.926 0.00 0.00 0.00 3.96
4031 8275 9.237187 TGGAGATTTTAATACAAACTGCATACA 57.763 29.630 0.00 0.00 0.00 2.29
4077 8321 8.496707 AAAATGTCCATTCATTATTTTGCTCC 57.503 30.769 0.00 0.00 37.09 4.70
4078 8322 5.247507 TGTCCATTCATTATTTTGCTCCG 57.752 39.130 0.00 0.00 0.00 4.63
4079 8323 4.704540 TGTCCATTCATTATTTTGCTCCGT 59.295 37.500 0.00 0.00 0.00 4.69
4080 8324 5.883115 TGTCCATTCATTATTTTGCTCCGTA 59.117 36.000 0.00 0.00 0.00 4.02
4081 8325 6.545666 TGTCCATTCATTATTTTGCTCCGTAT 59.454 34.615 0.00 0.00 0.00 3.06
4082 8326 6.857964 GTCCATTCATTATTTTGCTCCGTATG 59.142 38.462 0.00 0.00 0.00 2.39
4083 8327 6.545666 TCCATTCATTATTTTGCTCCGTATGT 59.454 34.615 0.00 0.00 0.00 2.29
4084 8328 7.717436 TCCATTCATTATTTTGCTCCGTATGTA 59.283 33.333 0.00 0.00 0.00 2.29
4085 8329 8.017373 CCATTCATTATTTTGCTCCGTATGTAG 58.983 37.037 0.00 0.00 0.00 2.74
4086 8330 8.559536 CATTCATTATTTTGCTCCGTATGTAGT 58.440 33.333 0.00 0.00 0.00 2.73
4087 8331 7.709269 TCATTATTTTGCTCCGTATGTAGTC 57.291 36.000 0.00 0.00 0.00 2.59
4088 8332 6.704493 TCATTATTTTGCTCCGTATGTAGTCC 59.296 38.462 0.00 0.00 0.00 3.85
4089 8333 2.572191 TTTGCTCCGTATGTAGTCCG 57.428 50.000 0.00 0.00 0.00 4.79
4090 8334 0.101759 TTGCTCCGTATGTAGTCCGC 59.898 55.000 0.00 0.00 0.00 5.54
4091 8335 1.033202 TGCTCCGTATGTAGTCCGCA 61.033 55.000 0.00 0.00 0.00 5.69
4092 8336 0.314302 GCTCCGTATGTAGTCCGCAT 59.686 55.000 0.00 0.00 0.00 4.73
4093 8337 1.269621 GCTCCGTATGTAGTCCGCATT 60.270 52.381 0.00 0.00 0.00 3.56
4094 8338 2.394708 CTCCGTATGTAGTCCGCATTG 58.605 52.381 0.00 0.00 0.00 2.82
4095 8339 2.025898 TCCGTATGTAGTCCGCATTGA 58.974 47.619 0.00 0.00 0.00 2.57
4096 8340 2.427812 TCCGTATGTAGTCCGCATTGAA 59.572 45.455 0.00 0.00 0.00 2.69
4097 8341 3.119065 TCCGTATGTAGTCCGCATTGAAA 60.119 43.478 0.00 0.00 0.00 2.69
4098 8342 3.807622 CCGTATGTAGTCCGCATTGAAAT 59.192 43.478 0.00 0.00 0.00 2.17
4099 8343 4.084537 CCGTATGTAGTCCGCATTGAAATC 60.085 45.833 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
318 579 1.606994 GCACAATGGAGGTGTCACGTA 60.607 52.381 0.00 0.00 38.51 3.57
349 635 4.081697 TGAAGCTTTCATCGGTCATACTCA 60.082 41.667 0.00 0.00 34.08 3.41
351 637 4.471904 TGAAGCTTTCATCGGTCATACT 57.528 40.909 0.00 0.00 34.08 2.12
382 671 8.926710 CACAAGAGAAGAAACGAAGTGTATATT 58.073 33.333 0.00 0.00 45.00 1.28
405 694 2.181521 GGCGGTGAAAACGACCACA 61.182 57.895 0.00 0.00 35.13 4.17
408 697 1.009335 GTTGGCGGTGAAAACGACC 60.009 57.895 0.00 0.00 38.97 4.79
555 844 2.842462 AGACGGTGCTGTGGACCA 60.842 61.111 8.83 0.00 32.45 4.02
563 852 2.573869 CATCGGTCAGACGGTGCT 59.426 61.111 7.92 0.00 38.23 4.40
595 884 2.363018 CCTCTCGCCCTCCTCACA 60.363 66.667 0.00 0.00 0.00 3.58
637 926 4.809673 CGGGAAAGGAAAATGAAAGGAAG 58.190 43.478 0.00 0.00 0.00 3.46
791 1503 1.171308 CCAGAGACAGCCACCAATTG 58.829 55.000 0.00 0.00 0.00 2.32
893 1615 1.839354 TCATGGGTGAGCTAAGCATGA 59.161 47.619 1.93 6.91 0.00 3.07
938 1672 6.441284 TGGTTATACTAAACTAAGGTGCTCCA 59.559 38.462 7.70 0.00 35.89 3.86
1035 1954 2.897969 CTGAGTGGTGTGGTAGTAACCT 59.102 50.000 0.00 0.00 46.91 3.50
1036 1955 2.612221 GCTGAGTGGTGTGGTAGTAACC 60.612 54.545 0.00 0.00 46.98 2.85
1039 1958 1.893137 CTGCTGAGTGGTGTGGTAGTA 59.107 52.381 0.00 0.00 0.00 1.82
1141 2063 1.207089 TCGAAGTGGCCCATCTTGTAG 59.793 52.381 0.00 0.00 0.00 2.74
1156 2078 1.153939 CCTGTGAGCGAGGTCGAAG 60.154 63.158 2.94 0.00 43.02 3.79
1214 2155 4.725490 TGCATGATGATGATCCATGAGTT 58.275 39.130 13.55 0.00 0.00 3.01
1269 2216 1.180456 CCACCCTGCAGCATCAACAA 61.180 55.000 8.66 0.00 0.00 2.83
1344 2299 1.601419 GCTGGGAGTAGTACACGGCA 61.601 60.000 14.74 0.00 0.00 5.69
1392 2347 2.764128 GAGATCCCCGTGGCCTCA 60.764 66.667 3.32 0.00 33.73 3.86
1698 2653 1.298667 GTTCCTGGCGGCCTTTCTA 59.701 57.895 21.46 0.00 0.00 2.10
1794 3701 3.023119 ACATGCCCTAATTGATTTCGCA 58.977 40.909 0.00 0.00 0.00 5.10
1877 4263 5.023452 GGGAATGGAGGGAGTACAATTTTT 58.977 41.667 0.00 0.00 0.00 1.94
1879 4265 3.858638 AGGGAATGGAGGGAGTACAATTT 59.141 43.478 0.00 0.00 0.00 1.82
1881 4267 3.151542 AGGGAATGGAGGGAGTACAAT 57.848 47.619 0.00 0.00 0.00 2.71
1882 4268 2.661176 AGGGAATGGAGGGAGTACAA 57.339 50.000 0.00 0.00 0.00 2.41
1883 4269 2.661176 AAGGGAATGGAGGGAGTACA 57.339 50.000 0.00 0.00 0.00 2.90
1885 4271 5.427857 TGTATAAGGGAATGGAGGGAGTA 57.572 43.478 0.00 0.00 0.00 2.59
1886 4272 4.295905 TGTATAAGGGAATGGAGGGAGT 57.704 45.455 0.00 0.00 0.00 3.85
1887 4273 5.234466 CTTGTATAAGGGAATGGAGGGAG 57.766 47.826 0.00 0.00 0.00 4.30
1900 4286 5.957842 TTGAGTTTGTGGCCTTGTATAAG 57.042 39.130 3.32 0.00 0.00 1.73
1901 4287 6.909550 ATTTGAGTTTGTGGCCTTGTATAA 57.090 33.333 3.32 0.00 0.00 0.98
1902 4288 6.909550 AATTTGAGTTTGTGGCCTTGTATA 57.090 33.333 3.32 0.00 0.00 1.47
1904 4290 5.594725 TGTAATTTGAGTTTGTGGCCTTGTA 59.405 36.000 3.32 0.00 0.00 2.41
1906 4292 4.942852 TGTAATTTGAGTTTGTGGCCTTG 58.057 39.130 3.32 0.00 0.00 3.61
1910 4296 4.584327 ACCTGTAATTTGAGTTTGTGGC 57.416 40.909 0.00 0.00 0.00 5.01
1912 4298 6.877611 AGGTACCTGTAATTTGAGTTTGTG 57.122 37.500 15.42 0.00 0.00 3.33
1916 4302 6.947376 ACCTAGGTACCTGTAATTTGAGTT 57.053 37.500 25.33 0.00 0.00 3.01
1926 4312 8.702819 GTCATTAGATTTTACCTAGGTACCTGT 58.297 37.037 25.33 16.78 0.00 4.00
1937 4333 9.774742 CTTGCAAAGTAGTCATTAGATTTTACC 57.225 33.333 0.00 0.00 39.70 2.85
1957 4353 4.183101 CAAGAAGAAAAGTTGGCTTGCAA 58.817 39.130 0.00 0.00 34.71 4.08
1958 4354 3.195396 ACAAGAAGAAAAGTTGGCTTGCA 59.805 39.130 0.00 0.00 36.97 4.08
1959 4355 3.785486 ACAAGAAGAAAAGTTGGCTTGC 58.215 40.909 0.00 0.00 36.97 4.01
1960 4356 7.380602 CAGATAACAAGAAGAAAAGTTGGCTTG 59.619 37.037 0.00 0.00 38.81 4.01
1962 4358 6.772716 TCAGATAACAAGAAGAAAAGTTGGCT 59.227 34.615 0.00 0.00 0.00 4.75
1963 4359 6.970484 TCAGATAACAAGAAGAAAAGTTGGC 58.030 36.000 0.00 0.00 0.00 4.52
1964 4360 8.383318 TCTCAGATAACAAGAAGAAAAGTTGG 57.617 34.615 0.00 0.00 0.00 3.77
1966 4362 9.784531 TGATCTCAGATAACAAGAAGAAAAGTT 57.215 29.630 0.00 0.00 0.00 2.66
1975 4371 9.914131 CCGTATTAATGATCTCAGATAACAAGA 57.086 33.333 0.00 0.00 0.00 3.02
1979 4375 7.063544 GTGGCCGTATTAATGATCTCAGATAAC 59.936 40.741 0.00 0.00 0.00 1.89
1980 4376 7.097192 GTGGCCGTATTAATGATCTCAGATAA 58.903 38.462 0.00 0.00 0.00 1.75
1981 4377 6.210584 TGTGGCCGTATTAATGATCTCAGATA 59.789 38.462 0.00 0.00 0.00 1.98
1983 4379 4.343814 TGTGGCCGTATTAATGATCTCAGA 59.656 41.667 0.00 0.00 0.00 3.27
1984 4380 4.631131 TGTGGCCGTATTAATGATCTCAG 58.369 43.478 0.00 0.00 0.00 3.35
1985 4381 4.681074 TGTGGCCGTATTAATGATCTCA 57.319 40.909 0.00 0.00 0.00 3.27
1986 4382 4.142816 GCATGTGGCCGTATTAATGATCTC 60.143 45.833 0.00 0.00 36.11 2.75
1987 4383 3.753272 GCATGTGGCCGTATTAATGATCT 59.247 43.478 0.00 0.00 36.11 2.75
1989 4385 3.485394 TGCATGTGGCCGTATTAATGAT 58.515 40.909 0.00 0.00 43.89 2.45
1990 4386 2.924421 TGCATGTGGCCGTATTAATGA 58.076 42.857 0.00 0.00 43.89 2.57
1991 4387 3.004629 ACATGCATGTGGCCGTATTAATG 59.995 43.478 30.92 1.03 43.89 1.90
1993 4389 2.649190 ACATGCATGTGGCCGTATTAA 58.351 42.857 30.92 0.00 43.89 1.40
1994 4390 2.340210 ACATGCATGTGGCCGTATTA 57.660 45.000 30.92 0.00 43.89 0.98
1996 4392 2.221169 CTTACATGCATGTGGCCGTAT 58.779 47.619 36.72 14.18 43.89 3.06
1997 4393 1.662517 CTTACATGCATGTGGCCGTA 58.337 50.000 36.72 17.19 43.89 4.02
1998 4394 1.031571 CCTTACATGCATGTGGCCGT 61.032 55.000 36.72 15.60 43.89 5.68
2000 4396 1.406539 CTTCCTTACATGCATGTGGCC 59.593 52.381 36.72 0.00 43.89 5.36
2001 4397 1.406539 CCTTCCTTACATGCATGTGGC 59.593 52.381 36.72 0.00 41.89 5.01
2002 4398 3.003394 TCCTTCCTTACATGCATGTGG 57.997 47.619 36.72 29.92 41.89 4.17
2003 4399 4.641541 TCATTCCTTCCTTACATGCATGTG 59.358 41.667 36.72 23.22 41.89 3.21
2004 4400 4.858850 TCATTCCTTCCTTACATGCATGT 58.141 39.130 33.20 33.20 44.48 3.21
2005 4401 5.128205 TCTCATTCCTTCCTTACATGCATG 58.872 41.667 25.09 25.09 0.00 4.06
2006 4402 5.378230 TCTCATTCCTTCCTTACATGCAT 57.622 39.130 0.00 0.00 0.00 3.96
2007 4403 4.842531 TCTCATTCCTTCCTTACATGCA 57.157 40.909 0.00 0.00 0.00 3.96
2008 4404 4.578105 CCTTCTCATTCCTTCCTTACATGC 59.422 45.833 0.00 0.00 0.00 4.06
2009 4405 5.994250 TCCTTCTCATTCCTTCCTTACATG 58.006 41.667 0.00 0.00 0.00 3.21
2010 4406 6.216456 ACTTCCTTCTCATTCCTTCCTTACAT 59.784 38.462 0.00 0.00 0.00 2.29
2011 4407 5.548056 ACTTCCTTCTCATTCCTTCCTTACA 59.452 40.000 0.00 0.00 0.00 2.41
2012 4408 6.056090 ACTTCCTTCTCATTCCTTCCTTAC 57.944 41.667 0.00 0.00 0.00 2.34
2013 4409 6.127026 GCTACTTCCTTCTCATTCCTTCCTTA 60.127 42.308 0.00 0.00 0.00 2.69
2015 4411 4.163268 GCTACTTCCTTCTCATTCCTTCCT 59.837 45.833 0.00 0.00 0.00 3.36
2016 4412 4.080863 TGCTACTTCCTTCTCATTCCTTCC 60.081 45.833 0.00 0.00 0.00 3.46
2017 4413 4.873259 GTGCTACTTCCTTCTCATTCCTTC 59.127 45.833 0.00 0.00 0.00 3.46
2019 4415 3.840666 TGTGCTACTTCCTTCTCATTCCT 59.159 43.478 0.00 0.00 0.00 3.36
2020 4416 4.187694 CTGTGCTACTTCCTTCTCATTCC 58.812 47.826 0.00 0.00 0.00 3.01
2021 4417 4.629200 CACTGTGCTACTTCCTTCTCATTC 59.371 45.833 0.00 0.00 0.00 2.67
2022 4418 4.040952 ACACTGTGCTACTTCCTTCTCATT 59.959 41.667 7.90 0.00 0.00 2.57
2023 4419 3.580458 ACACTGTGCTACTTCCTTCTCAT 59.420 43.478 7.90 0.00 0.00 2.90
2025 4421 3.669251 ACACTGTGCTACTTCCTTCTC 57.331 47.619 7.90 0.00 0.00 2.87
2026 4422 5.746990 ATAACACTGTGCTACTTCCTTCT 57.253 39.130 7.90 0.00 0.00 2.85
2027 4423 7.764443 TCATAATAACACTGTGCTACTTCCTTC 59.236 37.037 7.90 0.00 0.00 3.46
2028 4424 7.549488 GTCATAATAACACTGTGCTACTTCCTT 59.451 37.037 7.90 0.00 0.00 3.36
2030 4426 7.042335 AGTCATAATAACACTGTGCTACTTCC 58.958 38.462 7.90 0.00 0.00 3.46
2031 4427 9.021863 GTAGTCATAATAACACTGTGCTACTTC 57.978 37.037 7.90 0.00 0.00 3.01
2033 4429 8.063200 TGTAGTCATAATAACACTGTGCTACT 57.937 34.615 7.90 0.00 0.00 2.57
2034 4430 8.755941 CATGTAGTCATAATAACACTGTGCTAC 58.244 37.037 7.90 8.29 32.47 3.58
2035 4431 7.438160 GCATGTAGTCATAATAACACTGTGCTA 59.562 37.037 7.90 0.00 32.47 3.49
2037 4433 6.037062 TGCATGTAGTCATAATAACACTGTGC 59.963 38.462 7.90 0.00 32.47 4.57
2038 4434 7.538303 TGCATGTAGTCATAATAACACTGTG 57.462 36.000 6.19 6.19 32.47 3.66
2039 4435 7.254898 GCATGCATGTAGTCATAATAACACTGT 60.255 37.037 26.79 0.00 32.47 3.55
2040 4436 7.073883 GCATGCATGTAGTCATAATAACACTG 58.926 38.462 26.79 0.00 32.47 3.66
2041 4437 6.767423 TGCATGCATGTAGTCATAATAACACT 59.233 34.615 26.79 0.00 32.47 3.55
2042 4438 6.958255 TGCATGCATGTAGTCATAATAACAC 58.042 36.000 26.79 5.79 32.47 3.32
2043 4439 7.282901 ACTTGCATGCATGTAGTCATAATAACA 59.717 33.333 31.27 9.33 33.44 2.41
2044 4440 7.642669 ACTTGCATGCATGTAGTCATAATAAC 58.357 34.615 31.27 6.83 33.44 1.89
2045 4441 7.806409 ACTTGCATGCATGTAGTCATAATAA 57.194 32.000 31.27 7.97 33.44 1.40
2046 4442 9.506018 AATACTTGCATGCATGTAGTCATAATA 57.494 29.630 35.26 20.98 39.04 0.98
2049 4445 8.900983 TTAATACTTGCATGCATGTAGTCATA 57.099 30.769 35.19 25.50 39.04 2.15
2050 4446 7.806409 TTAATACTTGCATGCATGTAGTCAT 57.194 32.000 35.19 26.22 39.04 3.06
2051 4447 7.622893 TTTAATACTTGCATGCATGTAGTCA 57.377 32.000 35.19 26.95 39.04 3.41
2056 4452 9.304731 CAACTTATTTAATACTTGCATGCATGT 57.695 29.630 33.40 33.40 37.87 3.21
2057 4453 8.270799 GCAACTTATTTAATACTTGCATGCATG 58.729 33.333 26.93 26.93 35.23 4.06
2058 4454 8.199449 AGCAACTTATTTAATACTTGCATGCAT 58.801 29.630 23.37 10.46 37.14 3.96
2059 4455 7.488792 CAGCAACTTATTTAATACTTGCATGCA 59.511 33.333 18.46 18.46 37.14 3.96
2060 4456 7.043192 CCAGCAACTTATTTAATACTTGCATGC 60.043 37.037 11.82 11.82 37.14 4.06
2061 4457 8.190122 TCCAGCAACTTATTTAATACTTGCATG 58.810 33.333 19.97 15.92 37.14 4.06
2063 4459 7.695480 TCCAGCAACTTATTTAATACTTGCA 57.305 32.000 19.97 0.00 37.14 4.08
2064 4460 8.026607 TGTTCCAGCAACTTATTTAATACTTGC 58.973 33.333 14.19 14.19 35.79 4.01
2067 4463 9.461312 TGATGTTCCAGCAACTTATTTAATACT 57.539 29.630 0.00 0.00 35.79 2.12
2077 4473 8.776470 CAAAATTTAATGATGTTCCAGCAACTT 58.224 29.630 0.00 0.00 32.21 2.66
2079 4475 7.017055 GCAAAATTTAATGATGTTCCAGCAAC 58.983 34.615 0.00 0.00 32.21 4.17
2082 4478 5.876460 AGGCAAAATTTAATGATGTTCCAGC 59.124 36.000 0.00 0.00 0.00 4.85
2083 4479 6.536224 GGAGGCAAAATTTAATGATGTTCCAG 59.464 38.462 0.00 0.00 0.00 3.86
2085 4481 5.519927 CGGAGGCAAAATTTAATGATGTTCC 59.480 40.000 0.00 0.00 0.00 3.62
2086 4482 6.099341 ACGGAGGCAAAATTTAATGATGTTC 58.901 36.000 0.00 0.00 0.00 3.18
2092 4488 6.386654 ACAGTAACGGAGGCAAAATTTAATG 58.613 36.000 0.00 0.00 0.00 1.90
2093 4489 6.584185 ACAGTAACGGAGGCAAAATTTAAT 57.416 33.333 0.00 0.00 0.00 1.40
2095 4491 6.711645 ACTAACAGTAACGGAGGCAAAATTTA 59.288 34.615 0.00 0.00 0.00 1.40
2096 4492 4.929819 AACAGTAACGGAGGCAAAATTT 57.070 36.364 0.00 0.00 0.00 1.82
2097 4493 5.048991 CACTAACAGTAACGGAGGCAAAATT 60.049 40.000 0.00 0.00 0.00 1.82
2099 4495 3.810941 CACTAACAGTAACGGAGGCAAAA 59.189 43.478 0.00 0.00 0.00 2.44
2100 4496 3.395639 CACTAACAGTAACGGAGGCAAA 58.604 45.455 0.00 0.00 0.00 3.68
2103 4499 2.005560 GCCACTAACAGTAACGGAGGC 61.006 57.143 0.00 0.00 0.00 4.70
2105 4501 1.549170 AGGCCACTAACAGTAACGGAG 59.451 52.381 5.01 0.00 0.00 4.63
2106 4502 1.636148 AGGCCACTAACAGTAACGGA 58.364 50.000 5.01 0.00 0.00 4.69
2107 4503 2.073816 CAAGGCCACTAACAGTAACGG 58.926 52.381 5.01 0.00 0.00 4.44
2109 4505 6.870769 TCTATACAAGGCCACTAACAGTAAC 58.129 40.000 5.01 0.00 0.00 2.50
2110 4506 7.497595 CATCTATACAAGGCCACTAACAGTAA 58.502 38.462 5.01 0.00 0.00 2.24
2111 4507 6.462487 GCATCTATACAAGGCCACTAACAGTA 60.462 42.308 5.01 0.00 0.00 2.74
2112 4508 5.685075 GCATCTATACAAGGCCACTAACAGT 60.685 44.000 5.01 0.00 0.00 3.55
2113 4509 4.752101 GCATCTATACAAGGCCACTAACAG 59.248 45.833 5.01 0.00 0.00 3.16
2114 4510 4.163268 TGCATCTATACAAGGCCACTAACA 59.837 41.667 5.01 0.00 0.00 2.41
2115 4511 4.703897 TGCATCTATACAAGGCCACTAAC 58.296 43.478 5.01 0.00 0.00 2.34
2117 4513 5.366482 TTTGCATCTATACAAGGCCACTA 57.634 39.130 5.01 0.00 0.00 2.74
2118 4514 3.931907 TTGCATCTATACAAGGCCACT 57.068 42.857 5.01 0.00 0.00 4.00
2119 4515 4.981806 TTTTGCATCTATACAAGGCCAC 57.018 40.909 5.01 0.00 0.00 5.01
2120 4516 4.955450 ACATTTTGCATCTATACAAGGCCA 59.045 37.500 5.01 0.00 0.00 5.36
2122 4518 9.533253 AAAATACATTTTGCATCTATACAAGGC 57.467 29.630 0.00 0.00 38.46 4.35
2131 4527 9.533253 GCCACTATAAAAATACATTTTGCATCT 57.467 29.630 0.86 0.00 41.29 2.90
2132 4528 8.764287 GGCCACTATAAAAATACATTTTGCATC 58.236 33.333 0.00 0.00 41.29 3.91
2133 4529 8.485392 AGGCCACTATAAAAATACATTTTGCAT 58.515 29.630 5.01 1.72 41.29 3.96
2134 4530 7.846066 AGGCCACTATAAAAATACATTTTGCA 58.154 30.769 5.01 0.00 41.29 4.08
2135 4531 8.603181 CAAGGCCACTATAAAAATACATTTTGC 58.397 33.333 5.01 0.00 41.29 3.68
2136 4532 9.651913 ACAAGGCCACTATAAAAATACATTTTG 57.348 29.630 5.01 0.00 41.29 2.44
2158 4554 6.253946 ACTCCCTTCATTCCCTTATACAAG 57.746 41.667 0.00 0.00 0.00 3.16
2159 4555 6.100714 GGTACTCCCTTCATTCCCTTATACAA 59.899 42.308 0.00 0.00 0.00 2.41
2160 4556 5.605488 GGTACTCCCTTCATTCCCTTATACA 59.395 44.000 0.00 0.00 0.00 2.29
2161 4557 5.845065 AGGTACTCCCTTCATTCCCTTATAC 59.155 44.000 0.00 0.00 42.73 1.47
2162 4558 6.051946 AGGTACTCCCTTCATTCCCTTATA 57.948 41.667 0.00 0.00 42.73 0.98
2163 4559 4.909284 AGGTACTCCCTTCATTCCCTTAT 58.091 43.478 0.00 0.00 42.73 1.73
2165 4561 3.222394 AGGTACTCCCTTCATTCCCTT 57.778 47.619 0.00 0.00 42.73 3.95
2808 6991 6.202188 CGTATCCACCATTAGCGATAAAACTT 59.798 38.462 0.00 0.00 0.00 2.66
2810 6993 5.693104 TCGTATCCACCATTAGCGATAAAAC 59.307 40.000 0.00 0.00 0.00 2.43
3146 7352 6.745450 CGAGACTTGAAAGAGAGAGTAATGTC 59.255 42.308 0.00 0.00 0.00 3.06
3171 7402 3.821033 ACCCTTCTTGAAACAGTGTATGC 59.179 43.478 0.00 0.00 0.00 3.14
3237 7473 3.831323 TCAAGAAATGGTTGCCTTGAGA 58.169 40.909 0.00 0.00 39.76 3.27
3238 7474 4.589216 TTCAAGAAATGGTTGCCTTGAG 57.411 40.909 0.00 0.00 43.70 3.02
3239 7475 5.104982 ACTTTTCAAGAAATGGTTGCCTTGA 60.105 36.000 11.55 0.00 42.00 3.02
3377 7620 9.914131 AAAGAAATGAAGACTAAAAATGCCTAC 57.086 29.630 0.00 0.00 0.00 3.18
3520 7764 0.754957 CCTGCTGGGTTTGGTCAACA 60.755 55.000 0.71 0.00 37.07 3.33
3535 7779 2.349155 CCTTTGACGAAAACGTACCTGC 60.349 50.000 0.00 0.00 0.00 4.85
3537 7781 2.102925 TCCCTTTGACGAAAACGTACCT 59.897 45.455 0.00 0.00 0.00 3.08
3592 7836 9.912634 TTTTTATCTTGAATTTGTGGATGACTC 57.087 29.630 0.00 0.00 0.00 3.36
3682 7926 9.056005 GGCCTTCTCAAAATCAAATTTTAAAGT 57.944 29.630 0.00 0.00 40.27 2.66
3702 7946 2.877043 TAAACCGATCGTAGGCCTTC 57.123 50.000 12.58 4.38 0.00 3.46
3717 7961 8.874816 TGACTTAGCAAAAACCACAAATTAAAC 58.125 29.630 0.00 0.00 0.00 2.01
3749 7993 1.504359 CCACGTGAAAGCCTTTACGA 58.496 50.000 19.30 0.00 39.61 3.43
3790 8034 1.823169 TTAGGACACCCGACACCAGC 61.823 60.000 0.00 0.00 37.58 4.85
3829 8073 7.563188 AGATGATAGCCATAGGTTAGATACCAG 59.437 40.741 0.00 0.00 41.82 4.00
3832 8076 9.635404 AGTAGATGATAGCCATAGGTTAGATAC 57.365 37.037 0.00 0.00 35.17 2.24
3859 8103 1.480137 GATGATAGCCATCGGAGGGAG 59.520 57.143 13.78 0.00 41.88 4.30
3860 8104 1.561643 GATGATAGCCATCGGAGGGA 58.438 55.000 13.78 0.00 41.88 4.20
3871 8115 1.287730 CGAAGGGCGCAGATGATAGC 61.288 60.000 10.83 0.00 0.00 2.97
3872 8116 0.032678 ACGAAGGGCGCAGATGATAG 59.967 55.000 10.83 0.00 46.04 2.08
3873 8117 0.032130 GACGAAGGGCGCAGATGATA 59.968 55.000 10.83 0.00 46.04 2.15
3874 8118 1.227380 GACGAAGGGCGCAGATGAT 60.227 57.895 10.83 0.00 46.04 2.45
3875 8119 2.184322 GACGAAGGGCGCAGATGA 59.816 61.111 10.83 0.00 46.04 2.92
3876 8120 2.892425 GGACGAAGGGCGCAGATG 60.892 66.667 10.83 0.00 46.04 2.90
3877 8121 4.514577 CGGACGAAGGGCGCAGAT 62.515 66.667 10.83 0.00 46.04 2.90
3879 8123 4.735132 TTCGGACGAAGGGCGCAG 62.735 66.667 10.83 0.00 46.04 5.18
3880 8124 3.696173 TATTTTCGGACGAAGGGCGCA 62.696 52.381 10.83 0.00 46.04 6.09
3881 8125 1.085501 TATTTTCGGACGAAGGGCGC 61.086 55.000 0.00 0.00 46.04 6.53
3883 8127 2.019948 AGTATTTTCGGACGAAGGGC 57.980 50.000 7.25 0.88 35.38 5.19
3884 8128 3.332034 ACAAGTATTTTCGGACGAAGGG 58.668 45.455 7.25 0.00 35.38 3.95
3885 8129 6.366877 TCTTTACAAGTATTTTCGGACGAAGG 59.633 38.462 7.25 0.00 35.38 3.46
3886 8130 7.342318 TCTTTACAAGTATTTTCGGACGAAG 57.658 36.000 7.25 0.00 35.38 3.79
3887 8131 7.712264 TTCTTTACAAGTATTTTCGGACGAA 57.288 32.000 2.62 2.62 0.00 3.85
3888 8132 7.712264 TTTCTTTACAAGTATTTTCGGACGA 57.288 32.000 0.00 0.00 0.00 4.20
3889 8133 9.685005 CTATTTCTTTACAAGTATTTTCGGACG 57.315 33.333 0.00 0.00 0.00 4.79
3903 8147 9.182214 ACGTCTAGGTACATCTATTTCTTTACA 57.818 33.333 0.00 0.00 0.00 2.41
3914 8158 9.406113 AGAACTAAAATACGTCTAGGTACATCT 57.594 33.333 0.00 0.00 0.00 2.90
3917 8161 9.890629 TCTAGAACTAAAATACGTCTAGGTACA 57.109 33.333 0.00 0.00 0.00 2.90
3943 8187 9.887862 AGGAGAAATGGATAAAAATGGATGTAT 57.112 29.630 0.00 0.00 0.00 2.29
3945 8189 9.136323 GTAGGAGAAATGGATAAAAATGGATGT 57.864 33.333 0.00 0.00 0.00 3.06
3946 8190 9.135189 TGTAGGAGAAATGGATAAAAATGGATG 57.865 33.333 0.00 0.00 0.00 3.51
3947 8191 9.713684 TTGTAGGAGAAATGGATAAAAATGGAT 57.286 29.630 0.00 0.00 0.00 3.41
3948 8192 9.540538 TTTGTAGGAGAAATGGATAAAAATGGA 57.459 29.630 0.00 0.00 0.00 3.41
3957 8201 8.927411 CCCAAAATATTTGTAGGAGAAATGGAT 58.073 33.333 13.38 0.00 0.00 3.41
3958 8202 8.119246 TCCCAAAATATTTGTAGGAGAAATGGA 58.881 33.333 13.38 0.00 0.00 3.41
3959 8203 8.305046 TCCCAAAATATTTGTAGGAGAAATGG 57.695 34.615 13.38 8.14 0.00 3.16
3960 8204 9.754382 CATCCCAAAATATTTGTAGGAGAAATG 57.246 33.333 15.44 8.32 0.00 2.32
3961 8205 8.927411 CCATCCCAAAATATTTGTAGGAGAAAT 58.073 33.333 15.44 0.00 0.00 2.17
3962 8206 8.119246 TCCATCCCAAAATATTTGTAGGAGAAA 58.881 33.333 15.44 5.12 0.00 2.52
3963 8207 7.647827 TCCATCCCAAAATATTTGTAGGAGAA 58.352 34.615 15.44 5.37 0.00 2.87
3964 8208 7.219601 TCCATCCCAAAATATTTGTAGGAGA 57.780 36.000 15.44 11.23 0.00 3.71
3965 8209 6.491403 CCTCCATCCCAAAATATTTGTAGGAG 59.509 42.308 15.44 16.31 37.95 3.69
3966 8210 6.372931 CCTCCATCCCAAAATATTTGTAGGA 58.627 40.000 13.55 13.55 0.00 2.94
3967 8211 5.539955 CCCTCCATCCCAAAATATTTGTAGG 59.460 44.000 0.39 4.73 0.00 3.18
3968 8212 6.372931 TCCCTCCATCCCAAAATATTTGTAG 58.627 40.000 0.39 0.00 0.00 2.74
3969 8213 6.068498 ACTCCCTCCATCCCAAAATATTTGTA 60.068 38.462 0.39 0.00 0.00 2.41
3970 8214 5.211201 CTCCCTCCATCCCAAAATATTTGT 58.789 41.667 0.39 0.00 0.00 2.83
3971 8215 5.211201 ACTCCCTCCATCCCAAAATATTTG 58.789 41.667 0.39 0.00 0.00 2.32
3972 8216 5.487861 ACTCCCTCCATCCCAAAATATTT 57.512 39.130 0.00 0.00 0.00 1.40
3973 8217 5.435041 TGTACTCCCTCCATCCCAAAATATT 59.565 40.000 0.00 0.00 0.00 1.28
3974 8218 4.981647 TGTACTCCCTCCATCCCAAAATAT 59.018 41.667 0.00 0.00 0.00 1.28
3975 8219 4.376223 TGTACTCCCTCCATCCCAAAATA 58.624 43.478 0.00 0.00 0.00 1.40
3976 8220 3.197983 TGTACTCCCTCCATCCCAAAAT 58.802 45.455 0.00 0.00 0.00 1.82
3977 8221 2.638325 TGTACTCCCTCCATCCCAAAA 58.362 47.619 0.00 0.00 0.00 2.44
3978 8222 2.352561 TGTACTCCCTCCATCCCAAA 57.647 50.000 0.00 0.00 0.00 3.28
3979 8223 2.126882 CATGTACTCCCTCCATCCCAA 58.873 52.381 0.00 0.00 0.00 4.12
3980 8224 1.009552 ACATGTACTCCCTCCATCCCA 59.990 52.381 0.00 0.00 0.00 4.37
3981 8225 1.694696 GACATGTACTCCCTCCATCCC 59.305 57.143 0.00 0.00 0.00 3.85
3982 8226 2.683768 AGACATGTACTCCCTCCATCC 58.316 52.381 0.00 0.00 0.00 3.51
3983 8227 4.762289 AAAGACATGTACTCCCTCCATC 57.238 45.455 0.00 0.00 0.00 3.51
3984 8228 4.324563 CCAAAAGACATGTACTCCCTCCAT 60.325 45.833 0.00 0.00 0.00 3.41
3985 8229 3.009033 CCAAAAGACATGTACTCCCTCCA 59.991 47.826 0.00 0.00 0.00 3.86
3986 8230 3.263425 TCCAAAAGACATGTACTCCCTCC 59.737 47.826 0.00 0.00 0.00 4.30
3987 8231 4.223032 TCTCCAAAAGACATGTACTCCCTC 59.777 45.833 0.00 0.00 0.00 4.30
3988 8232 4.168101 TCTCCAAAAGACATGTACTCCCT 58.832 43.478 0.00 0.00 0.00 4.20
3989 8233 4.553330 TCTCCAAAAGACATGTACTCCC 57.447 45.455 0.00 0.00 0.00 4.30
3990 8234 7.454260 AAAATCTCCAAAAGACATGTACTCC 57.546 36.000 0.00 0.00 36.65 3.85
4000 8244 9.691362 GCAGTTTGTATTAAAATCTCCAAAAGA 57.309 29.630 0.00 0.00 38.72 2.52
4001 8245 9.474920 TGCAGTTTGTATTAAAATCTCCAAAAG 57.525 29.630 0.00 0.00 0.00 2.27
4002 8246 9.995003 ATGCAGTTTGTATTAAAATCTCCAAAA 57.005 25.926 0.00 0.00 0.00 2.44
4005 8249 9.237187 TGTATGCAGTTTGTATTAAAATCTCCA 57.763 29.630 0.00 0.00 0.00 3.86
4051 8295 9.598517 GGAGCAAAATAATGAATGGACATTTTA 57.401 29.630 0.00 0.00 40.36 1.52
4052 8296 7.278424 CGGAGCAAAATAATGAATGGACATTTT 59.722 33.333 0.00 0.00 40.36 1.82
4053 8297 6.757947 CGGAGCAAAATAATGAATGGACATTT 59.242 34.615 0.00 0.00 40.36 2.32
4054 8298 6.127366 ACGGAGCAAAATAATGAATGGACATT 60.127 34.615 0.00 0.00 42.17 2.71
4055 8299 5.360714 ACGGAGCAAAATAATGAATGGACAT 59.639 36.000 0.00 0.00 0.00 3.06
4056 8300 4.704540 ACGGAGCAAAATAATGAATGGACA 59.295 37.500 0.00 0.00 0.00 4.02
4057 8301 5.248870 ACGGAGCAAAATAATGAATGGAC 57.751 39.130 0.00 0.00 0.00 4.02
4058 8302 6.545666 ACATACGGAGCAAAATAATGAATGGA 59.454 34.615 0.00 0.00 0.00 3.41
4059 8303 6.738114 ACATACGGAGCAAAATAATGAATGG 58.262 36.000 0.00 0.00 0.00 3.16
4060 8304 8.559536 ACTACATACGGAGCAAAATAATGAATG 58.440 33.333 0.00 0.00 0.00 2.67
4061 8305 8.677148 ACTACATACGGAGCAAAATAATGAAT 57.323 30.769 0.00 0.00 0.00 2.57
4062 8306 7.225931 GGACTACATACGGAGCAAAATAATGAA 59.774 37.037 0.00 0.00 0.00 2.57
4063 8307 6.704493 GGACTACATACGGAGCAAAATAATGA 59.296 38.462 0.00 0.00 0.00 2.57
4064 8308 6.346598 CGGACTACATACGGAGCAAAATAATG 60.347 42.308 0.00 0.00 0.00 1.90
4065 8309 5.694910 CGGACTACATACGGAGCAAAATAAT 59.305 40.000 0.00 0.00 0.00 1.28
4066 8310 5.045215 CGGACTACATACGGAGCAAAATAA 58.955 41.667 0.00 0.00 0.00 1.40
4067 8311 4.613944 CGGACTACATACGGAGCAAAATA 58.386 43.478 0.00 0.00 0.00 1.40
4068 8312 3.454375 CGGACTACATACGGAGCAAAAT 58.546 45.455 0.00 0.00 0.00 1.82
4069 8313 2.883574 CGGACTACATACGGAGCAAAA 58.116 47.619 0.00 0.00 0.00 2.44
4070 8314 1.470285 GCGGACTACATACGGAGCAAA 60.470 52.381 0.00 0.00 0.00 3.68
4071 8315 0.101759 GCGGACTACATACGGAGCAA 59.898 55.000 0.00 0.00 0.00 3.91
4072 8316 1.033202 TGCGGACTACATACGGAGCA 61.033 55.000 0.00 0.00 0.00 4.26
4073 8317 0.314302 ATGCGGACTACATACGGAGC 59.686 55.000 0.00 0.00 0.00 4.70
4074 8318 2.034179 TCAATGCGGACTACATACGGAG 59.966 50.000 0.00 0.00 0.00 4.63
4075 8319 2.025898 TCAATGCGGACTACATACGGA 58.974 47.619 0.00 0.00 0.00 4.69
4076 8320 2.502213 TCAATGCGGACTACATACGG 57.498 50.000 0.00 0.00 0.00 4.02
4077 8321 5.006649 GATTTCAATGCGGACTACATACG 57.993 43.478 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.