Multiple sequence alignment - TraesCS1B01G018300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G018300 | chr1B | 100.000 | 4542 | 0 | 0 | 1 | 4542 | 8820921 | 8816380 | 0.000000e+00 | 8388.0 |
1 | TraesCS1B01G018300 | chr1B | 83.518 | 2706 | 352 | 49 | 1000 | 3671 | 548193684 | 548191039 | 0.000000e+00 | 2440.0 |
2 | TraesCS1B01G018300 | chr1B | 84.298 | 242 | 23 | 9 | 498 | 737 | 548193667 | 548193439 | 5.910000e-54 | 222.0 |
3 | TraesCS1B01G018300 | chr1B | 95.745 | 47 | 1 | 1 | 577 | 622 | 548198257 | 548198303 | 1.750000e-09 | 75.0 |
4 | TraesCS1B01G018300 | chr1D | 95.955 | 3609 | 129 | 11 | 948 | 4542 | 6913108 | 6916713 | 0.000000e+00 | 5840.0 |
5 | TraesCS1B01G018300 | chr1D | 84.312 | 2709 | 342 | 53 | 1000 | 3671 | 407672543 | 407669881 | 0.000000e+00 | 2571.0 |
6 | TraesCS1B01G018300 | chr1D | 82.116 | 2807 | 393 | 65 | 960 | 3708 | 6714654 | 6711899 | 0.000000e+00 | 2302.0 |
7 | TraesCS1B01G018300 | chr1D | 85.000 | 240 | 25 | 4 | 498 | 737 | 407672526 | 407672298 | 2.730000e-57 | 233.0 |
8 | TraesCS1B01G018300 | chr1D | 90.066 | 151 | 14 | 1 | 345 | 494 | 463381915 | 463382065 | 1.290000e-45 | 195.0 |
9 | TraesCS1B01G018300 | chr1D | 93.617 | 47 | 2 | 1 | 577 | 622 | 6900092 | 6900046 | 8.150000e-08 | 69.4 |
10 | TraesCS1B01G018300 | chr1A | 91.770 | 2734 | 214 | 5 | 820 | 3542 | 8341863 | 8344596 | 0.000000e+00 | 3792.0 |
11 | TraesCS1B01G018300 | chr1A | 91.262 | 2701 | 221 | 9 | 853 | 3541 | 8331799 | 8334496 | 0.000000e+00 | 3666.0 |
12 | TraesCS1B01G018300 | chr1A | 81.927 | 2750 | 420 | 50 | 995 | 3708 | 7834679 | 7837387 | 0.000000e+00 | 2254.0 |
13 | TraesCS1B01G018300 | chr1A | 86.885 | 305 | 21 | 10 | 498 | 797 | 8340222 | 8340512 | 1.580000e-84 | 324.0 |
14 | TraesCS1B01G018300 | chr1A | 82.008 | 239 | 26 | 9 | 498 | 733 | 7834701 | 7834925 | 2.160000e-43 | 187.0 |
15 | TraesCS1B01G018300 | chr1A | 83.077 | 195 | 21 | 5 | 109 | 302 | 8339155 | 8339338 | 2.810000e-37 | 167.0 |
16 | TraesCS1B01G018300 | chr1A | 78.455 | 246 | 33 | 11 | 498 | 737 | 9375631 | 9375400 | 4.740000e-30 | 143.0 |
17 | TraesCS1B01G018300 | chr1A | 85.393 | 89 | 9 | 4 | 3781 | 3868 | 8141675 | 8141590 | 6.260000e-14 | 89.8 |
18 | TraesCS1B01G018300 | chr1A | 91.489 | 47 | 3 | 1 | 577 | 622 | 7189841 | 7189887 | 3.790000e-06 | 63.9 |
19 | TraesCS1B01G018300 | chr2A | 84.880 | 2672 | 359 | 32 | 907 | 3546 | 611302729 | 611305387 | 0.000000e+00 | 2654.0 |
20 | TraesCS1B01G018300 | chr2B | 84.833 | 2657 | 350 | 35 | 924 | 3546 | 548623904 | 548626541 | 0.000000e+00 | 2625.0 |
21 | TraesCS1B01G018300 | chr2B | 93.617 | 47 | 2 | 1 | 577 | 622 | 729768229 | 729768183 | 8.150000e-08 | 69.4 |
22 | TraesCS1B01G018300 | chr2D | 84.618 | 2659 | 361 | 33 | 924 | 3546 | 469990501 | 469993147 | 0.000000e+00 | 2601.0 |
23 | TraesCS1B01G018300 | chr2D | 81.595 | 2809 | 405 | 66 | 912 | 3664 | 469983939 | 469986691 | 0.000000e+00 | 2220.0 |
24 | TraesCS1B01G018300 | chr2D | 90.000 | 150 | 15 | 0 | 345 | 494 | 419068135 | 419068284 | 1.290000e-45 | 195.0 |
25 | TraesCS1B01G018300 | chr5A | 83.221 | 2813 | 387 | 50 | 1000 | 3776 | 12194215 | 12191452 | 0.000000e+00 | 2501.0 |
26 | TraesCS1B01G018300 | chr5A | 94.737 | 114 | 6 | 0 | 624 | 737 | 12194083 | 12193970 | 1.300000e-40 | 178.0 |
27 | TraesCS1B01G018300 | chr5A | 89.583 | 48 | 4 | 1 | 577 | 623 | 12192585 | 12192632 | 4.910000e-05 | 60.2 |
28 | TraesCS1B01G018300 | chr5B | 82.868 | 2831 | 396 | 54 | 993 | 3785 | 13776139 | 13773360 | 0.000000e+00 | 2459.0 |
29 | TraesCS1B01G018300 | chr5B | 80.591 | 237 | 33 | 9 | 498 | 733 | 13776115 | 13775891 | 2.170000e-38 | 171.0 |
30 | TraesCS1B01G018300 | chr5B | 87.719 | 114 | 14 | 0 | 624 | 737 | 546145768 | 546145655 | 2.850000e-27 | 134.0 |
31 | TraesCS1B01G018300 | chr5B | 93.617 | 47 | 2 | 1 | 577 | 622 | 549549608 | 549549562 | 8.150000e-08 | 69.4 |
32 | TraesCS1B01G018300 | chr7B | 92.361 | 144 | 11 | 0 | 351 | 494 | 618428269 | 618428126 | 5.960000e-49 | 206.0 |
33 | TraesCS1B01G018300 | chr5D | 92.361 | 144 | 11 | 0 | 351 | 494 | 383645468 | 383645325 | 5.960000e-49 | 206.0 |
34 | TraesCS1B01G018300 | chr5D | 91.837 | 147 | 9 | 2 | 351 | 494 | 558575637 | 558575783 | 7.700000e-48 | 202.0 |
35 | TraesCS1B01G018300 | chr5D | 79.512 | 205 | 25 | 8 | 498 | 699 | 18083694 | 18083884 | 3.690000e-26 | 130.0 |
36 | TraesCS1B01G018300 | chr5D | 91.489 | 47 | 3 | 1 | 577 | 622 | 447107380 | 447107334 | 3.790000e-06 | 63.9 |
37 | TraesCS1B01G018300 | chr7D | 90.667 | 150 | 14 | 0 | 345 | 494 | 530857985 | 530858134 | 2.770000e-47 | 200.0 |
38 | TraesCS1B01G018300 | chr3D | 90.667 | 150 | 14 | 0 | 345 | 494 | 137981490 | 137981639 | 2.770000e-47 | 200.0 |
39 | TraesCS1B01G018300 | chr3D | 90.667 | 150 | 14 | 0 | 345 | 494 | 200383828 | 200383977 | 2.770000e-47 | 200.0 |
40 | TraesCS1B01G018300 | chr3D | 91.034 | 145 | 12 | 1 | 351 | 494 | 537154847 | 537154703 | 1.290000e-45 | 195.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G018300 | chr1B | 8816380 | 8820921 | 4541 | True | 8388.000000 | 8388 | 100.0000 | 1 | 4542 | 1 | chr1B.!!$R1 | 4541 |
1 | TraesCS1B01G018300 | chr1B | 548191039 | 548193684 | 2645 | True | 1331.000000 | 2440 | 83.9080 | 498 | 3671 | 2 | chr1B.!!$R2 | 3173 |
2 | TraesCS1B01G018300 | chr1D | 6913108 | 6916713 | 3605 | False | 5840.000000 | 5840 | 95.9550 | 948 | 4542 | 1 | chr1D.!!$F1 | 3594 |
3 | TraesCS1B01G018300 | chr1D | 6711899 | 6714654 | 2755 | True | 2302.000000 | 2302 | 82.1160 | 960 | 3708 | 1 | chr1D.!!$R1 | 2748 |
4 | TraesCS1B01G018300 | chr1D | 407669881 | 407672543 | 2662 | True | 1402.000000 | 2571 | 84.6560 | 498 | 3671 | 2 | chr1D.!!$R3 | 3173 |
5 | TraesCS1B01G018300 | chr1A | 8331799 | 8334496 | 2697 | False | 3666.000000 | 3666 | 91.2620 | 853 | 3541 | 1 | chr1A.!!$F2 | 2688 |
6 | TraesCS1B01G018300 | chr1A | 8339155 | 8344596 | 5441 | False | 1427.666667 | 3792 | 87.2440 | 109 | 3542 | 3 | chr1A.!!$F4 | 3433 |
7 | TraesCS1B01G018300 | chr1A | 7834679 | 7837387 | 2708 | False | 1220.500000 | 2254 | 81.9675 | 498 | 3708 | 2 | chr1A.!!$F3 | 3210 |
8 | TraesCS1B01G018300 | chr2A | 611302729 | 611305387 | 2658 | False | 2654.000000 | 2654 | 84.8800 | 907 | 3546 | 1 | chr2A.!!$F1 | 2639 |
9 | TraesCS1B01G018300 | chr2B | 548623904 | 548626541 | 2637 | False | 2625.000000 | 2625 | 84.8330 | 924 | 3546 | 1 | chr2B.!!$F1 | 2622 |
10 | TraesCS1B01G018300 | chr2D | 469983939 | 469993147 | 9208 | False | 2410.500000 | 2601 | 83.1065 | 912 | 3664 | 2 | chr2D.!!$F2 | 2752 |
11 | TraesCS1B01G018300 | chr5A | 12191452 | 12194215 | 2763 | True | 1339.500000 | 2501 | 88.9790 | 624 | 3776 | 2 | chr5A.!!$R1 | 3152 |
12 | TraesCS1B01G018300 | chr5B | 13773360 | 13776139 | 2779 | True | 1315.000000 | 2459 | 81.7295 | 498 | 3785 | 2 | chr5B.!!$R3 | 3287 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
525 | 564 | 0.036022 | GGCTTCTCCTCTTGCACACT | 59.964 | 55.0 | 0.00 | 0.00 | 0.00 | 3.55 | F |
573 | 612 | 0.179076 | ATGATGACATTCTCGCGGCA | 60.179 | 50.0 | 6.13 | 0.00 | 32.21 | 5.69 | F |
1492 | 7155 | 0.030101 | CGGAAACCTTGCGCTCAAAA | 59.970 | 50.0 | 9.73 | 0.00 | 37.76 | 2.44 | F |
1581 | 7250 | 0.461961 | CAAAGTTTGGCCGGGACAAA | 59.538 | 50.0 | 23.98 | 23.98 | 38.31 | 2.83 | F |
3127 | 8827 | 0.625849 | CTGTGGGTTATCTTGCCCCT | 59.374 | 55.0 | 0.00 | 0.00 | 44.20 | 4.79 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1492 | 7155 | 0.692419 | AGGTCGGATGATGGGCTCTT | 60.692 | 55.000 | 0.0 | 0.0 | 0.00 | 2.85 | R |
2230 | 7920 | 1.336240 | ACAAGCTTCTTCGCATTTGCC | 60.336 | 47.619 | 0.0 | 0.0 | 37.91 | 4.52 | R |
3167 | 8867 | 0.393808 | ACCATGCCGAAGCCGTAAAT | 60.394 | 50.000 | 0.0 | 0.0 | 38.69 | 1.40 | R |
3244 | 8944 | 1.972872 | AGTTACTGTTGCTGCTGCTT | 58.027 | 45.000 | 17.0 | 0.0 | 40.48 | 3.91 | R |
4502 | 10234 | 1.277273 | CCTCAGCACATGACCTCTTGA | 59.723 | 52.381 | 0.0 | 0.0 | 33.22 | 3.02 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
24 | 25 | 7.778470 | AGGCGAAATAGAATCAACTAAGAAG | 57.222 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
27 | 28 | 8.451748 | GGCGAAATAGAATCAACTAAGAAGTTT | 58.548 | 33.333 | 0.00 | 0.00 | 43.60 | 2.66 |
28 | 29 | 9.827411 | GCGAAATAGAATCAACTAAGAAGTTTT | 57.173 | 29.630 | 0.00 | 0.00 | 43.60 | 2.43 |
38 | 39 | 8.810990 | TCAACTAAGAAGTTTTAAACAAGGGA | 57.189 | 30.769 | 10.60 | 0.66 | 43.60 | 4.20 |
39 | 40 | 8.680001 | TCAACTAAGAAGTTTTAAACAAGGGAC | 58.320 | 33.333 | 10.60 | 0.00 | 43.60 | 4.46 |
40 | 41 | 8.683615 | CAACTAAGAAGTTTTAAACAAGGGACT | 58.316 | 33.333 | 10.60 | 0.00 | 43.60 | 3.85 |
41 | 42 | 9.910267 | AACTAAGAAGTTTTAAACAAGGGACTA | 57.090 | 29.630 | 10.60 | 0.00 | 43.60 | 2.59 |
55 | 56 | 8.533569 | AACAAGGGACTAAAAAGAAAAGATGA | 57.466 | 30.769 | 0.00 | 0.00 | 38.49 | 2.92 |
56 | 57 | 8.533569 | ACAAGGGACTAAAAAGAAAAGATGAA | 57.466 | 30.769 | 0.00 | 0.00 | 38.49 | 2.57 |
58 | 59 | 9.987272 | CAAGGGACTAAAAAGAAAAGATGAATT | 57.013 | 29.630 | 0.00 | 0.00 | 38.49 | 2.17 |
74 | 75 | 8.970859 | AAGATGAATTAATCAGTCTAACAGGG | 57.029 | 34.615 | 5.56 | 0.00 | 42.53 | 4.45 |
76 | 77 | 6.636454 | TGAATTAATCAGTCTAACAGGGGT | 57.364 | 37.500 | 0.00 | 0.00 | 33.04 | 4.95 |
77 | 78 | 7.027874 | TGAATTAATCAGTCTAACAGGGGTT | 57.972 | 36.000 | 0.00 | 0.00 | 35.90 | 4.11 |
80 | 81 | 4.993705 | AATCAGTCTAACAGGGGTTGAA | 57.006 | 40.909 | 0.00 | 0.00 | 37.88 | 2.69 |
82 | 83 | 3.314693 | TCAGTCTAACAGGGGTTGAACT | 58.685 | 45.455 | 0.00 | 0.00 | 37.88 | 3.01 |
84 | 85 | 5.091552 | TCAGTCTAACAGGGGTTGAACTAT | 58.908 | 41.667 | 0.00 | 0.00 | 37.88 | 2.12 |
85 | 86 | 5.187186 | TCAGTCTAACAGGGGTTGAACTATC | 59.813 | 44.000 | 0.00 | 0.00 | 37.88 | 2.08 |
86 | 87 | 4.470304 | AGTCTAACAGGGGTTGAACTATCC | 59.530 | 45.833 | 0.00 | 0.00 | 37.88 | 2.59 |
87 | 88 | 3.778629 | TCTAACAGGGGTTGAACTATCCC | 59.221 | 47.826 | 0.41 | 0.41 | 37.88 | 3.85 |
92 | 93 | 0.913924 | GGGTTGAACTATCCCCGGAA | 59.086 | 55.000 | 0.73 | 0.00 | 35.52 | 4.30 |
93 | 94 | 1.282738 | GGGTTGAACTATCCCCGGAAA | 59.717 | 52.381 | 0.73 | 0.00 | 35.52 | 3.13 |
95 | 96 | 3.423749 | GGTTGAACTATCCCCGGAAAAA | 58.576 | 45.455 | 0.73 | 0.00 | 0.00 | 1.94 |
124 | 125 | 3.008049 | GGGTTGAACTAGAGAAGGCTTCA | 59.992 | 47.826 | 27.70 | 7.76 | 0.00 | 3.02 |
130 | 131 | 3.422796 | ACTAGAGAAGGCTTCACTCGAA | 58.577 | 45.455 | 26.87 | 11.92 | 36.03 | 3.71 |
131 | 132 | 3.827302 | ACTAGAGAAGGCTTCACTCGAAA | 59.173 | 43.478 | 26.87 | 11.60 | 36.03 | 3.46 |
133 | 134 | 3.855858 | AGAGAAGGCTTCACTCGAAATC | 58.144 | 45.455 | 27.70 | 14.15 | 36.03 | 2.17 |
134 | 135 | 2.600867 | GAGAAGGCTTCACTCGAAATCG | 59.399 | 50.000 | 27.70 | 0.00 | 41.45 | 3.34 |
135 | 136 | 1.061276 | GAAGGCTTCACTCGAAATCGC | 59.939 | 52.381 | 21.99 | 0.00 | 39.60 | 4.58 |
140 | 141 | 2.222685 | GCTTCACTCGAAATCGCTGAAG | 60.223 | 50.000 | 24.12 | 24.12 | 45.82 | 3.02 |
155 | 156 | 3.313803 | CGCTGAAGCTGTAGATCACTCTA | 59.686 | 47.826 | 0.10 | 0.00 | 39.32 | 2.43 |
222 | 224 | 4.106029 | ACAGCGTATGTCGTATTTCTGT | 57.894 | 40.909 | 0.00 | 0.00 | 37.75 | 3.41 |
224 | 226 | 5.271625 | ACAGCGTATGTCGTATTTCTGTAG | 58.728 | 41.667 | 0.00 | 0.00 | 37.75 | 2.74 |
225 | 227 | 5.163683 | ACAGCGTATGTCGTATTTCTGTAGT | 60.164 | 40.000 | 0.00 | 0.00 | 37.75 | 2.73 |
227 | 229 | 5.065602 | AGCGTATGTCGTATTTCTGTAGTCA | 59.934 | 40.000 | 0.00 | 0.00 | 42.13 | 3.41 |
228 | 230 | 5.913514 | GCGTATGTCGTATTTCTGTAGTCAT | 59.086 | 40.000 | 0.00 | 0.00 | 42.13 | 3.06 |
229 | 231 | 7.041576 | AGCGTATGTCGTATTTCTGTAGTCATA | 60.042 | 37.037 | 0.00 | 0.00 | 42.13 | 2.15 |
230 | 232 | 7.059260 | GCGTATGTCGTATTTCTGTAGTCATAC | 59.941 | 40.741 | 0.00 | 0.00 | 42.13 | 2.39 |
258 | 260 | 3.944055 | TGTCTTTCTAGCGAGCTTCTT | 57.056 | 42.857 | 1.86 | 0.00 | 0.00 | 2.52 |
261 | 263 | 5.779922 | TGTCTTTCTAGCGAGCTTCTTTTA | 58.220 | 37.500 | 1.86 | 0.00 | 0.00 | 1.52 |
263 | 265 | 7.544622 | TGTCTTTCTAGCGAGCTTCTTTTATA | 58.455 | 34.615 | 1.86 | 0.00 | 0.00 | 0.98 |
265 | 267 | 9.680315 | GTCTTTCTAGCGAGCTTCTTTTATATA | 57.320 | 33.333 | 1.86 | 0.00 | 0.00 | 0.86 |
323 | 362 | 2.146920 | TGATCATTCAGGCCATTGCA | 57.853 | 45.000 | 5.01 | 0.00 | 40.13 | 4.08 |
335 | 374 | 2.459060 | CCATTGCATTGTTGGCTGAA | 57.541 | 45.000 | 7.75 | 0.00 | 0.00 | 3.02 |
340 | 379 | 2.580962 | TGCATTGTTGGCTGAACACTA | 58.419 | 42.857 | 1.86 | 0.00 | 44.53 | 2.74 |
345 | 384 | 3.275617 | TGTTGGCTGAACACTAACTGT | 57.724 | 42.857 | 0.00 | 0.00 | 39.78 | 3.55 |
347 | 386 | 2.543777 | TGGCTGAACACTAACTGTCC | 57.456 | 50.000 | 0.00 | 0.00 | 30.29 | 4.02 |
350 | 389 | 1.071699 | GCTGAACACTAACTGTCCCCA | 59.928 | 52.381 | 0.00 | 0.00 | 30.29 | 4.96 |
353 | 392 | 4.398319 | CTGAACACTAACTGTCCCCAAAT | 58.602 | 43.478 | 0.00 | 0.00 | 30.29 | 2.32 |
357 | 396 | 7.691213 | TGAACACTAACTGTCCCCAAATATAA | 58.309 | 34.615 | 0.00 | 0.00 | 30.29 | 0.98 |
361 | 400 | 7.182206 | ACACTAACTGTCCCCAAATATAAGTCT | 59.818 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
364 | 403 | 9.462606 | CTAACTGTCCCCAAATATAAGTCTTTT | 57.537 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
365 | 404 | 8.721133 | AACTGTCCCCAAATATAAGTCTTTTT | 57.279 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
367 | 406 | 9.239551 | ACTGTCCCCAAATATAAGTCTTTTTAC | 57.760 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
368 | 407 | 9.238368 | CTGTCCCCAAATATAAGTCTTTTTACA | 57.762 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
369 | 408 | 9.238368 | TGTCCCCAAATATAAGTCTTTTTACAG | 57.762 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
381 | 420 | 6.164176 | AGTCTTTTTACAGATTCCACTACGG | 58.836 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
382 | 421 | 5.350640 | GTCTTTTTACAGATTCCACTACGGG | 59.649 | 44.000 | 0.00 | 0.00 | 34.36 | 5.28 |
384 | 423 | 2.154567 | TACAGATTCCACTACGGGCT | 57.845 | 50.000 | 0.00 | 0.00 | 34.36 | 5.19 |
386 | 425 | 1.755380 | ACAGATTCCACTACGGGCTAC | 59.245 | 52.381 | 0.00 | 0.00 | 34.36 | 3.58 |
390 | 429 | 3.573110 | AGATTCCACTACGGGCTACATAC | 59.427 | 47.826 | 0.00 | 0.00 | 34.36 | 2.39 |
391 | 430 | 2.440517 | TCCACTACGGGCTACATACA | 57.559 | 50.000 | 0.00 | 0.00 | 34.36 | 2.29 |
398 | 437 | 1.553248 | ACGGGCTACATACAGAGCAAA | 59.447 | 47.619 | 0.00 | 0.00 | 40.64 | 3.68 |
399 | 438 | 2.027561 | ACGGGCTACATACAGAGCAAAA | 60.028 | 45.455 | 0.00 | 0.00 | 40.64 | 2.44 |
403 | 442 | 5.050091 | CGGGCTACATACAGAGCAAAATAAG | 60.050 | 44.000 | 0.00 | 0.00 | 40.64 | 1.73 |
405 | 444 | 6.238484 | GGGCTACATACAGAGCAAAATAAGTG | 60.238 | 42.308 | 0.00 | 0.00 | 40.64 | 3.16 |
406 | 445 | 6.538742 | GGCTACATACAGAGCAAAATAAGTGA | 59.461 | 38.462 | 0.00 | 0.00 | 40.64 | 3.41 |
407 | 446 | 7.065803 | GGCTACATACAGAGCAAAATAAGTGAA | 59.934 | 37.037 | 0.00 | 0.00 | 40.64 | 3.18 |
410 | 449 | 8.798859 | ACATACAGAGCAAAATAAGTGAATCT | 57.201 | 30.769 | 0.00 | 0.00 | 0.00 | 2.40 |
413 | 452 | 9.890629 | ATACAGAGCAAAATAAGTGAATCTACA | 57.109 | 29.630 | 0.00 | 0.00 | 0.00 | 2.74 |
414 | 453 | 8.034058 | ACAGAGCAAAATAAGTGAATCTACAC | 57.966 | 34.615 | 0.00 | 0.00 | 40.60 | 2.90 |
462 | 501 | 9.661563 | TTCGTATGTAGTTTGTATTGAAATCCT | 57.338 | 29.630 | 0.00 | 0.00 | 0.00 | 3.24 |
471 | 510 | 9.965902 | AGTTTGTATTGAAATCCTAGAATGACT | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
494 | 533 | 9.535878 | GACTTATATTTAGAAACAGAGGGAGTG | 57.464 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
495 | 534 | 7.988028 | ACTTATATTTAGAAACAGAGGGAGTGC | 59.012 | 37.037 | 0.00 | 0.00 | 0.00 | 4.40 |
496 | 535 | 2.743636 | TTAGAAACAGAGGGAGTGCG | 57.256 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
498 | 537 | 1.629043 | AGAAACAGAGGGAGTGCGTA | 58.371 | 50.000 | 0.00 | 0.00 | 0.00 | 4.42 |
500 | 539 | 1.272769 | GAAACAGAGGGAGTGCGTACT | 59.727 | 52.381 | 5.62 | 5.62 | 40.66 | 2.73 |
501 | 540 | 2.211250 | AACAGAGGGAGTGCGTACTA | 57.789 | 50.000 | 6.01 | 0.00 | 37.25 | 1.82 |
504 | 543 | 2.093106 | CAGAGGGAGTGCGTACTACTT | 58.907 | 52.381 | 15.92 | 8.19 | 37.91 | 2.24 |
505 | 544 | 2.093106 | AGAGGGAGTGCGTACTACTTG | 58.907 | 52.381 | 15.92 | 0.00 | 37.91 | 3.16 |
506 | 545 | 1.134560 | GAGGGAGTGCGTACTACTTGG | 59.865 | 57.143 | 15.92 | 0.00 | 37.91 | 3.61 |
507 | 546 | 0.175073 | GGGAGTGCGTACTACTTGGG | 59.825 | 60.000 | 15.92 | 0.00 | 37.91 | 4.12 |
509 | 548 | 0.531200 | GAGTGCGTACTACTTGGGCT | 59.469 | 55.000 | 6.01 | 0.00 | 37.25 | 5.19 |
510 | 549 | 0.974383 | AGTGCGTACTACTTGGGCTT | 59.026 | 50.000 | 3.62 | 0.00 | 34.74 | 4.35 |
511 | 550 | 1.067071 | AGTGCGTACTACTTGGGCTTC | 60.067 | 52.381 | 3.62 | 0.00 | 34.74 | 3.86 |
512 | 551 | 1.067071 | GTGCGTACTACTTGGGCTTCT | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
514 | 553 | 1.471153 | GCGTACTACTTGGGCTTCTCC | 60.471 | 57.143 | 0.00 | 0.00 | 0.00 | 3.71 |
516 | 555 | 2.099427 | CGTACTACTTGGGCTTCTCCTC | 59.901 | 54.545 | 0.00 | 0.00 | 34.39 | 3.71 |
517 | 556 | 2.632763 | ACTACTTGGGCTTCTCCTCT | 57.367 | 50.000 | 0.00 | 0.00 | 34.39 | 3.69 |
518 | 557 | 2.909217 | ACTACTTGGGCTTCTCCTCTT | 58.091 | 47.619 | 0.00 | 0.00 | 34.39 | 2.85 |
519 | 558 | 2.569404 | ACTACTTGGGCTTCTCCTCTTG | 59.431 | 50.000 | 0.00 | 0.00 | 34.39 | 3.02 |
520 | 559 | 0.037447 | ACTTGGGCTTCTCCTCTTGC | 59.963 | 55.000 | 0.00 | 0.00 | 34.39 | 4.01 |
521 | 560 | 0.037303 | CTTGGGCTTCTCCTCTTGCA | 59.963 | 55.000 | 0.00 | 0.00 | 34.39 | 4.08 |
523 | 562 | 1.376466 | GGGCTTCTCCTCTTGCACA | 59.624 | 57.895 | 0.00 | 0.00 | 34.39 | 4.57 |
524 | 563 | 0.957888 | GGGCTTCTCCTCTTGCACAC | 60.958 | 60.000 | 0.00 | 0.00 | 34.39 | 3.82 |
525 | 564 | 0.036022 | GGCTTCTCCTCTTGCACACT | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
526 | 565 | 1.155042 | GCTTCTCCTCTTGCACACTG | 58.845 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
527 | 566 | 1.270518 | GCTTCTCCTCTTGCACACTGA | 60.271 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
529 | 568 | 3.260740 | CTTCTCCTCTTGCACACTGATC | 58.739 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
530 | 569 | 1.552337 | TCTCCTCTTGCACACTGATCC | 59.448 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
532 | 571 | 1.980765 | TCCTCTTGCACACTGATCCTT | 59.019 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
533 | 572 | 2.082231 | CCTCTTGCACACTGATCCTTG | 58.918 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
536 | 575 | 1.538512 | CTTGCACACTGATCCTTGGTG | 59.461 | 52.381 | 0.00 | 0.00 | 37.05 | 4.17 |
537 | 576 | 1.878775 | GCACACTGATCCTTGGTGC | 59.121 | 57.895 | 11.42 | 11.42 | 46.53 | 5.01 |
538 | 577 | 1.915614 | GCACACTGATCCTTGGTGCG | 61.916 | 60.000 | 11.42 | 2.45 | 44.32 | 5.34 |
541 | 580 | 2.270205 | CTGATCCTTGGTGCGCCT | 59.730 | 61.111 | 18.96 | 0.00 | 35.27 | 5.52 |
563 | 602 | 2.579207 | GCAGCTGCAAATGATGACAT | 57.421 | 45.000 | 33.36 | 0.00 | 41.59 | 3.06 |
566 | 605 | 3.428999 | GCAGCTGCAAATGATGACATTCT | 60.429 | 43.478 | 33.36 | 0.00 | 44.67 | 2.40 |
567 | 606 | 4.352039 | CAGCTGCAAATGATGACATTCTC | 58.648 | 43.478 | 0.00 | 0.00 | 44.67 | 2.87 |
568 | 607 | 3.064958 | AGCTGCAAATGATGACATTCTCG | 59.935 | 43.478 | 1.02 | 0.00 | 44.67 | 4.04 |
569 | 608 | 3.360533 | CTGCAAATGATGACATTCTCGC | 58.639 | 45.455 | 0.00 | 0.00 | 44.67 | 5.03 |
570 | 609 | 2.223089 | TGCAAATGATGACATTCTCGCG | 60.223 | 45.455 | 0.00 | 0.00 | 44.67 | 5.87 |
572 | 611 | 0.940126 | AATGATGACATTCTCGCGGC | 59.060 | 50.000 | 6.13 | 0.00 | 42.20 | 6.53 |
573 | 612 | 0.179076 | ATGATGACATTCTCGCGGCA | 60.179 | 50.000 | 6.13 | 0.00 | 32.21 | 5.69 |
574 | 613 | 0.807275 | TGATGACATTCTCGCGGCAG | 60.807 | 55.000 | 6.13 | 0.00 | 0.00 | 4.85 |
576 | 615 | 3.567797 | GACATTCTCGCGGCAGGC | 61.568 | 66.667 | 6.13 | 0.00 | 38.69 | 4.85 |
593 | 632 | 2.854076 | CCACCTCCCCCAGCTTTT | 59.146 | 61.111 | 0.00 | 0.00 | 0.00 | 2.27 |
594 | 633 | 1.304464 | CCACCTCCCCCAGCTTTTC | 60.304 | 63.158 | 0.00 | 0.00 | 0.00 | 2.29 |
595 | 634 | 1.770324 | CACCTCCCCCAGCTTTTCT | 59.230 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
596 | 635 | 0.610232 | CACCTCCCCCAGCTTTTCTG | 60.610 | 60.000 | 0.00 | 0.00 | 42.49 | 3.02 |
599 | 638 | 0.987294 | CTCCCCCAGCTTTTCTGAGA | 59.013 | 55.000 | 0.00 | 0.00 | 45.72 | 3.27 |
601 | 640 | 1.352352 | TCCCCCAGCTTTTCTGAGAAG | 59.648 | 52.381 | 3.71 | 3.71 | 45.72 | 2.85 |
606 | 645 | 4.100035 | CCCCAGCTTTTCTGAGAAGTTTTT | 59.900 | 41.667 | 9.37 | 0.00 | 45.72 | 1.94 |
607 | 646 | 5.301805 | CCCCAGCTTTTCTGAGAAGTTTTTA | 59.698 | 40.000 | 9.37 | 0.00 | 45.72 | 1.52 |
608 | 647 | 6.442112 | CCCAGCTTTTCTGAGAAGTTTTTAG | 58.558 | 40.000 | 9.37 | 0.00 | 45.72 | 1.85 |
609 | 648 | 6.039829 | CCCAGCTTTTCTGAGAAGTTTTTAGT | 59.960 | 38.462 | 9.37 | 0.00 | 45.72 | 2.24 |
610 | 649 | 7.228706 | CCCAGCTTTTCTGAGAAGTTTTTAGTA | 59.771 | 37.037 | 9.37 | 0.00 | 45.72 | 1.82 |
611 | 650 | 8.286097 | CCAGCTTTTCTGAGAAGTTTTTAGTAG | 58.714 | 37.037 | 9.37 | 0.00 | 45.72 | 2.57 |
613 | 652 | 7.499232 | AGCTTTTCTGAGAAGTTTTTAGTAGCA | 59.501 | 33.333 | 9.37 | 0.00 | 0.00 | 3.49 |
616 | 655 | 7.478520 | TTCTGAGAAGTTTTTAGTAGCACAC | 57.521 | 36.000 | 0.00 | 0.00 | 0.00 | 3.82 |
618 | 657 | 6.479001 | TCTGAGAAGTTTTTAGTAGCACACAC | 59.521 | 38.462 | 0.00 | 0.00 | 0.00 | 3.82 |
621 | 660 | 7.982919 | TGAGAAGTTTTTAGTAGCACACACTAA | 59.017 | 33.333 | 0.00 | 0.00 | 36.85 | 2.24 |
622 | 661 | 8.904099 | AGAAGTTTTTAGTAGCACACACTAAT | 57.096 | 30.769 | 0.00 | 0.00 | 38.08 | 1.73 |
623 | 662 | 9.991906 | AGAAGTTTTTAGTAGCACACACTAATA | 57.008 | 29.630 | 0.00 | 0.00 | 38.08 | 0.98 |
627 | 666 | 9.309796 | GTTTTTAGTAGCACACACTAATAAACG | 57.690 | 33.333 | 4.29 | 0.00 | 40.43 | 3.60 |
628 | 667 | 7.585286 | TTTAGTAGCACACACTAATAAACGG | 57.415 | 36.000 | 0.00 | 0.00 | 37.61 | 4.44 |
756 | 1458 | 8.933653 | TCAGTAATCATGAGGTTATTACATCCA | 58.066 | 33.333 | 15.18 | 0.00 | 38.15 | 3.41 |
759 | 1461 | 9.209175 | GTAATCATGAGGTTATTACATCCAGAC | 57.791 | 37.037 | 0.09 | 0.00 | 36.52 | 3.51 |
811 | 1559 | 6.096423 | ACGATAAGTGCATTCTCCTACTGTAA | 59.904 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
815 | 1563 | 4.938226 | AGTGCATTCTCCTACTGTAAAAGC | 59.062 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
816 | 1564 | 4.695455 | GTGCATTCTCCTACTGTAAAAGCA | 59.305 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
821 | 2851 | 5.755409 | TCTCCTACTGTAAAAGCAATCCA | 57.245 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
837 | 2867 | 2.024176 | TCCACCTGGTAGAAGCTTCA | 57.976 | 50.000 | 27.57 | 11.42 | 36.34 | 3.02 |
930 | 6570 | 4.732285 | AACATACTTGTTCAGCTCAACG | 57.268 | 40.909 | 0.00 | 0.00 | 42.43 | 4.10 |
1093 | 6744 | 3.620374 | AGCTGCAAACAATGATACTCTCG | 59.380 | 43.478 | 1.02 | 0.00 | 0.00 | 4.04 |
1211 | 6862 | 1.315690 | AAGTCGTCTCAGAACACCGA | 58.684 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1360 | 7011 | 8.212995 | TCAAGATATCAAGTGATGGCAATCTTA | 58.787 | 33.333 | 13.11 | 4.55 | 33.89 | 2.10 |
1492 | 7155 | 0.030101 | CGGAAACCTTGCGCTCAAAA | 59.970 | 50.000 | 9.73 | 0.00 | 37.76 | 2.44 |
1581 | 7250 | 0.461961 | CAAAGTTTGGCCGGGACAAA | 59.538 | 50.000 | 23.98 | 23.98 | 38.31 | 2.83 |
1693 | 7368 | 0.862283 | GCTCGTCCTTAAGCGTCTCG | 60.862 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1795 | 7470 | 2.498644 | TATGGATCCACGCACCAAAA | 57.501 | 45.000 | 18.99 | 0.00 | 37.24 | 2.44 |
2144 | 7834 | 1.581934 | TGCACTAGTGACAGCAACAC | 58.418 | 50.000 | 27.08 | 5.76 | 38.38 | 3.32 |
2255 | 7945 | 2.238942 | TGCGAAGAAGCTTGTCTCAA | 57.761 | 45.000 | 2.10 | 0.00 | 38.13 | 3.02 |
2279 | 7969 | 2.420547 | CCTGCTCCTGCACTGCTTATTA | 60.421 | 50.000 | 1.98 | 0.00 | 45.31 | 0.98 |
2487 | 8178 | 5.311121 | TGGGTTTGGGTTACTCATTCTTCTA | 59.689 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2529 | 8225 | 2.293122 | ACAAATTCATGTGGTGTGGTCG | 59.707 | 45.455 | 0.00 | 0.00 | 30.82 | 4.79 |
2548 | 8244 | 4.256920 | GTCGGCTGCCATTATTCTATGAT | 58.743 | 43.478 | 20.29 | 0.00 | 0.00 | 2.45 |
2608 | 8304 | 9.538508 | AAATATACTGATTTAGTTCGTGGTACC | 57.461 | 33.333 | 4.43 | 4.43 | 40.89 | 3.34 |
2625 | 8321 | 6.263344 | GTGGTACCAAAAACTTCTCTGAAAC | 58.737 | 40.000 | 18.31 | 0.00 | 0.00 | 2.78 |
2848 | 8544 | 8.744568 | TTGTGTATGAGCATATGTTAAATGGA | 57.255 | 30.769 | 4.29 | 0.00 | 0.00 | 3.41 |
3004 | 8703 | 3.458189 | ACACTGCGATATTAAGCCAGAC | 58.542 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
3026 | 8725 | 4.637534 | ACAACATACTTCTGGATGCATCAC | 59.362 | 41.667 | 27.25 | 16.88 | 0.00 | 3.06 |
3127 | 8827 | 0.625849 | CTGTGGGTTATCTTGCCCCT | 59.374 | 55.000 | 0.00 | 0.00 | 44.20 | 4.79 |
3140 | 8840 | 2.604118 | GCCCCTGAGTGGCTTACTA | 58.396 | 57.895 | 0.00 | 0.00 | 45.70 | 1.82 |
3167 | 8867 | 3.064207 | GCTATCACACCGAAAGTTGACA | 58.936 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
3244 | 8944 | 5.372373 | TCACCTGAAACATCATACAACACA | 58.628 | 37.500 | 0.00 | 0.00 | 0.00 | 3.72 |
3263 | 8972 | 1.605710 | CAAGCAGCAGCAACAGTAACT | 59.394 | 47.619 | 3.17 | 0.00 | 45.49 | 2.24 |
3536 | 9248 | 2.211250 | ATCTGGTGCTGCAACTTCAT | 57.789 | 45.000 | 19.68 | 5.07 | 0.00 | 2.57 |
3542 | 9254 | 3.004629 | TGGTGCTGCAACTTCATTGTAAG | 59.995 | 43.478 | 19.68 | 0.00 | 40.77 | 2.34 |
3546 | 9258 | 5.922544 | GTGCTGCAACTTCATTGTAAGAATT | 59.077 | 36.000 | 2.77 | 0.00 | 40.77 | 2.17 |
3719 | 9445 | 6.384224 | CAATCATTGTAGCGAAATATGGCAT | 58.616 | 36.000 | 4.88 | 4.88 | 31.86 | 4.40 |
3820 | 9546 | 9.862371 | TTTTTCAAACTGCTCACAATAAAACTA | 57.138 | 25.926 | 0.00 | 0.00 | 0.00 | 2.24 |
3826 | 9552 | 7.328277 | ACTGCTCACAATAAAACTACAACAA | 57.672 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3829 | 9555 | 8.572828 | TGCTCACAATAAAACTACAACAATTG | 57.427 | 30.769 | 3.24 | 3.24 | 0.00 | 2.32 |
3856 | 9582 | 4.629200 | CAGTTCTGCAAGTAGGAAGATGTC | 59.371 | 45.833 | 0.00 | 0.00 | 33.76 | 3.06 |
3900 | 9626 | 7.634671 | TGATATGATCAAGCAAAACATCAGT | 57.365 | 32.000 | 0.00 | 0.00 | 36.11 | 3.41 |
3951 | 9677 | 5.423886 | TCCGTGTGATTTGTATAATGCTGA | 58.576 | 37.500 | 0.00 | 0.00 | 0.00 | 4.26 |
4044 | 9770 | 2.027192 | TCCGAAGTGCATTCTAGGCTTT | 60.027 | 45.455 | 0.00 | 0.00 | 35.61 | 3.51 |
4083 | 9809 | 5.675684 | ACTGTTTTTCTTTTCCACACCAT | 57.324 | 34.783 | 0.00 | 0.00 | 0.00 | 3.55 |
4090 | 9816 | 7.473735 | TTTTCTTTTCCACACCATGCATATA | 57.526 | 32.000 | 0.00 | 0.00 | 0.00 | 0.86 |
4093 | 9819 | 7.473735 | TCTTTTCCACACCATGCATATAAAA | 57.526 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
4095 | 9821 | 8.538701 | TCTTTTCCACACCATGCATATAAAAAT | 58.461 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
4102 | 9828 | 8.533965 | CACACCATGCATATAAAAATTTTCTCG | 58.466 | 33.333 | 3.41 | 0.00 | 0.00 | 4.04 |
4128 | 9854 | 3.193479 | GGAAAATGTGGAACTGATCACCC | 59.807 | 47.826 | 0.00 | 0.00 | 38.04 | 4.61 |
4203 | 9929 | 7.766738 | TCAACTTGGAAGGTTATTTGTTTTTCC | 59.233 | 33.333 | 0.00 | 0.00 | 35.72 | 3.13 |
4271 | 9998 | 6.365247 | CGGTTTTCGCTATATAGTTACATGCT | 59.635 | 38.462 | 11.38 | 0.00 | 0.00 | 3.79 |
4279 | 10006 | 7.220108 | CGCTATATAGTTACATGCTTGCGAATA | 59.780 | 37.037 | 11.38 | 0.00 | 40.75 | 1.75 |
4351 | 10082 | 1.134401 | ACTCTGGCCATGATACCAACG | 60.134 | 52.381 | 5.51 | 0.00 | 34.96 | 4.10 |
4421 | 10153 | 6.826668 | TCTGTTTGGTTGTTATCTCTTCAGA | 58.173 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
4443 | 10175 | 7.066645 | TCAGATTCATTTTTCTGCGATTCTCAT | 59.933 | 33.333 | 0.00 | 0.00 | 39.36 | 2.90 |
4494 | 10226 | 2.770164 | GAAGCTGCTTCCTTGGACTA | 57.230 | 50.000 | 27.74 | 0.00 | 34.71 | 2.59 |
4499 | 10231 | 1.902508 | CTGCTTCCTTGGACTAGACCA | 59.097 | 52.381 | 10.05 | 10.05 | 38.24 | 4.02 |
4509 | 10241 | 3.165875 | TGGACTAGACCAAGTCAAGAGG | 58.834 | 50.000 | 11.73 | 0.00 | 46.40 | 3.69 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 7.331791 | ACTTCTTAGTTGATTCTATTTCGCCT | 58.668 | 34.615 | 0.00 | 0.00 | 0.00 | 5.52 |
2 | 3 | 9.827411 | AAAACTTCTTAGTTGATTCTATTTCGC | 57.173 | 29.630 | 0.00 | 0.00 | 43.74 | 4.70 |
12 | 13 | 9.416284 | TCCCTTGTTTAAAACTTCTTAGTTGAT | 57.584 | 29.630 | 0.00 | 0.00 | 43.74 | 2.57 |
13 | 14 | 8.680001 | GTCCCTTGTTTAAAACTTCTTAGTTGA | 58.320 | 33.333 | 0.00 | 0.00 | 43.74 | 3.18 |
15 | 16 | 8.818622 | AGTCCCTTGTTTAAAACTTCTTAGTT | 57.181 | 30.769 | 0.00 | 0.00 | 46.44 | 2.24 |
16 | 17 | 9.910267 | TTAGTCCCTTGTTTAAAACTTCTTAGT | 57.090 | 29.630 | 0.00 | 0.00 | 35.68 | 2.24 |
30 | 31 | 8.533569 | TCATCTTTTCTTTTTAGTCCCTTGTT | 57.466 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
31 | 32 | 8.533569 | TTCATCTTTTCTTTTTAGTCCCTTGT | 57.466 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
32 | 33 | 9.987272 | AATTCATCTTTTCTTTTTAGTCCCTTG | 57.013 | 29.630 | 0.00 | 0.00 | 0.00 | 3.61 |
48 | 49 | 9.401058 | CCCTGTTAGACTGATTAATTCATCTTT | 57.599 | 33.333 | 1.53 | 0.00 | 32.72 | 2.52 |
49 | 50 | 7.995488 | CCCCTGTTAGACTGATTAATTCATCTT | 59.005 | 37.037 | 1.53 | 0.00 | 32.72 | 2.40 |
50 | 51 | 7.127955 | ACCCCTGTTAGACTGATTAATTCATCT | 59.872 | 37.037 | 1.53 | 0.00 | 32.72 | 2.90 |
51 | 52 | 7.283329 | ACCCCTGTTAGACTGATTAATTCATC | 58.717 | 38.462 | 0.00 | 0.00 | 32.72 | 2.92 |
52 | 53 | 7.213178 | ACCCCTGTTAGACTGATTAATTCAT | 57.787 | 36.000 | 0.00 | 0.00 | 32.72 | 2.57 |
54 | 55 | 7.110155 | TCAACCCCTGTTAGACTGATTAATTC | 58.890 | 38.462 | 0.00 | 0.00 | 32.09 | 2.17 |
55 | 56 | 7.027874 | TCAACCCCTGTTAGACTGATTAATT | 57.972 | 36.000 | 0.00 | 0.00 | 32.09 | 1.40 |
56 | 57 | 6.636454 | TCAACCCCTGTTAGACTGATTAAT | 57.364 | 37.500 | 0.00 | 0.00 | 32.09 | 1.40 |
58 | 59 | 5.546499 | AGTTCAACCCCTGTTAGACTGATTA | 59.454 | 40.000 | 0.00 | 0.00 | 31.44 | 1.75 |
59 | 60 | 4.351111 | AGTTCAACCCCTGTTAGACTGATT | 59.649 | 41.667 | 0.00 | 0.00 | 31.44 | 2.57 |
60 | 61 | 3.910627 | AGTTCAACCCCTGTTAGACTGAT | 59.089 | 43.478 | 0.00 | 0.00 | 31.44 | 2.90 |
61 | 62 | 3.314693 | AGTTCAACCCCTGTTAGACTGA | 58.685 | 45.455 | 0.00 | 0.00 | 31.44 | 3.41 |
62 | 63 | 3.771577 | AGTTCAACCCCTGTTAGACTG | 57.228 | 47.619 | 0.00 | 0.00 | 31.44 | 3.51 |
63 | 64 | 4.470304 | GGATAGTTCAACCCCTGTTAGACT | 59.530 | 45.833 | 0.00 | 0.00 | 34.81 | 3.24 |
64 | 65 | 4.383880 | GGGATAGTTCAACCCCTGTTAGAC | 60.384 | 50.000 | 0.00 | 0.00 | 37.85 | 2.59 |
65 | 66 | 3.778629 | GGGATAGTTCAACCCCTGTTAGA | 59.221 | 47.826 | 0.00 | 0.00 | 37.85 | 2.10 |
66 | 67 | 4.152284 | GGGATAGTTCAACCCCTGTTAG | 57.848 | 50.000 | 0.00 | 0.00 | 37.85 | 2.34 |
74 | 75 | 2.793288 | TTTCCGGGGATAGTTCAACC | 57.207 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
95 | 96 | 5.377478 | CTTCTCTAGTTCAACCCCTGTTTT | 58.623 | 41.667 | 0.00 | 0.00 | 30.42 | 2.43 |
96 | 97 | 4.202472 | CCTTCTCTAGTTCAACCCCTGTTT | 60.202 | 45.833 | 0.00 | 0.00 | 30.42 | 2.83 |
97 | 98 | 3.328050 | CCTTCTCTAGTTCAACCCCTGTT | 59.672 | 47.826 | 0.00 | 0.00 | 34.14 | 3.16 |
98 | 99 | 2.907042 | CCTTCTCTAGTTCAACCCCTGT | 59.093 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
100 | 101 | 1.909986 | GCCTTCTCTAGTTCAACCCCT | 59.090 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
101 | 102 | 1.909986 | AGCCTTCTCTAGTTCAACCCC | 59.090 | 52.381 | 0.00 | 0.00 | 0.00 | 4.95 |
102 | 103 | 3.008049 | TGAAGCCTTCTCTAGTTCAACCC | 59.992 | 47.826 | 5.96 | 0.00 | 0.00 | 4.11 |
104 | 105 | 4.888917 | AGTGAAGCCTTCTCTAGTTCAAC | 58.111 | 43.478 | 7.23 | 0.00 | 32.21 | 3.18 |
105 | 106 | 4.321304 | CGAGTGAAGCCTTCTCTAGTTCAA | 60.321 | 45.833 | 8.90 | 0.00 | 33.98 | 2.69 |
107 | 108 | 3.440872 | TCGAGTGAAGCCTTCTCTAGTTC | 59.559 | 47.826 | 8.90 | 0.00 | 33.98 | 3.01 |
134 | 135 | 3.799281 | AGAGTGATCTACAGCTTCAGC | 57.201 | 47.619 | 0.00 | 0.00 | 42.49 | 4.26 |
135 | 136 | 7.715657 | AGATTTAGAGTGATCTACAGCTTCAG | 58.284 | 38.462 | 0.00 | 0.00 | 31.09 | 3.02 |
140 | 141 | 7.488322 | ACAGAAGATTTAGAGTGATCTACAGC | 58.512 | 38.462 | 0.00 | 0.00 | 32.52 | 4.40 |
204 | 206 | 5.268544 | TGACTACAGAAATACGACATACGC | 58.731 | 41.667 | 0.00 | 0.00 | 46.94 | 4.42 |
206 | 208 | 9.947669 | AAGTATGACTACAGAAATACGACATAC | 57.052 | 33.333 | 0.00 | 0.00 | 38.29 | 2.39 |
208 | 210 | 9.871238 | AAAAGTATGACTACAGAAATACGACAT | 57.129 | 29.630 | 0.00 | 0.00 | 32.05 | 3.06 |
210 | 212 | 9.136952 | ACAAAAGTATGACTACAGAAATACGAC | 57.863 | 33.333 | 0.00 | 0.00 | 32.05 | 4.34 |
224 | 226 | 7.530861 | CGCTAGAAAGACAAACAAAAGTATGAC | 59.469 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
225 | 227 | 7.439955 | TCGCTAGAAAGACAAACAAAAGTATGA | 59.560 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
227 | 229 | 7.571428 | GCTCGCTAGAAAGACAAACAAAAGTAT | 60.571 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
228 | 230 | 6.292703 | GCTCGCTAGAAAGACAAACAAAAGTA | 60.293 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
229 | 231 | 5.504173 | GCTCGCTAGAAAGACAAACAAAAGT | 60.504 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
230 | 232 | 4.906437 | GCTCGCTAGAAAGACAAACAAAAG | 59.094 | 41.667 | 0.00 | 0.00 | 0.00 | 2.27 |
302 | 304 | 3.834938 | TGCAATGGCCTGAATGATCATA | 58.165 | 40.909 | 9.04 | 0.00 | 40.13 | 2.15 |
304 | 306 | 2.146920 | TGCAATGGCCTGAATGATCA | 57.853 | 45.000 | 3.32 | 0.00 | 40.13 | 2.92 |
305 | 307 | 3.181469 | ACAATGCAATGGCCTGAATGATC | 60.181 | 43.478 | 6.73 | 0.00 | 40.13 | 2.92 |
306 | 308 | 2.769663 | ACAATGCAATGGCCTGAATGAT | 59.230 | 40.909 | 6.73 | 0.00 | 40.13 | 2.45 |
323 | 362 | 4.207165 | ACAGTTAGTGTTCAGCCAACAAT | 58.793 | 39.130 | 4.69 | 4.69 | 46.90 | 2.71 |
335 | 374 | 7.182206 | AGACTTATATTTGGGGACAGTTAGTGT | 59.818 | 37.037 | 0.00 | 0.00 | 44.54 | 3.55 |
340 | 379 | 8.721133 | AAAAAGACTTATATTTGGGGACAGTT | 57.279 | 30.769 | 0.00 | 0.00 | 44.54 | 3.16 |
357 | 396 | 6.164176 | CCGTAGTGGAATCTGTAAAAAGACT | 58.836 | 40.000 | 0.00 | 0.00 | 42.00 | 3.24 |
361 | 400 | 4.004982 | GCCCGTAGTGGAATCTGTAAAAA | 58.995 | 43.478 | 0.00 | 0.00 | 42.00 | 1.94 |
364 | 403 | 2.463752 | AGCCCGTAGTGGAATCTGTAA | 58.536 | 47.619 | 0.00 | 0.00 | 42.00 | 2.41 |
365 | 404 | 2.154567 | AGCCCGTAGTGGAATCTGTA | 57.845 | 50.000 | 0.00 | 0.00 | 42.00 | 2.74 |
367 | 406 | 1.754803 | TGTAGCCCGTAGTGGAATCTG | 59.245 | 52.381 | 0.00 | 0.00 | 42.00 | 2.90 |
368 | 407 | 2.154567 | TGTAGCCCGTAGTGGAATCT | 57.845 | 50.000 | 0.00 | 0.00 | 42.00 | 2.40 |
369 | 408 | 3.319972 | TGTATGTAGCCCGTAGTGGAATC | 59.680 | 47.826 | 0.00 | 0.00 | 42.00 | 2.52 |
372 | 411 | 2.092267 | TCTGTATGTAGCCCGTAGTGGA | 60.092 | 50.000 | 0.00 | 0.00 | 42.00 | 4.02 |
373 | 412 | 2.293677 | CTCTGTATGTAGCCCGTAGTGG | 59.706 | 54.545 | 0.00 | 0.00 | 37.55 | 4.00 |
377 | 416 | 2.061509 | TGCTCTGTATGTAGCCCGTA | 57.938 | 50.000 | 0.00 | 0.00 | 37.97 | 4.02 |
378 | 417 | 1.191535 | TTGCTCTGTATGTAGCCCGT | 58.808 | 50.000 | 0.00 | 0.00 | 37.97 | 5.28 |
379 | 418 | 2.309528 | TTTGCTCTGTATGTAGCCCG | 57.690 | 50.000 | 0.00 | 0.00 | 37.97 | 6.13 |
381 | 420 | 6.538742 | TCACTTATTTTGCTCTGTATGTAGCC | 59.461 | 38.462 | 0.00 | 0.00 | 37.97 | 3.93 |
382 | 421 | 7.539712 | TCACTTATTTTGCTCTGTATGTAGC | 57.460 | 36.000 | 0.00 | 0.00 | 39.25 | 3.58 |
384 | 423 | 9.890629 | AGATTCACTTATTTTGCTCTGTATGTA | 57.109 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
390 | 429 | 8.261492 | AGTGTAGATTCACTTATTTTGCTCTG | 57.739 | 34.615 | 0.00 | 0.00 | 44.92 | 3.35 |
391 | 430 | 8.317679 | AGAGTGTAGATTCACTTATTTTGCTCT | 58.682 | 33.333 | 0.98 | 0.00 | 46.81 | 4.09 |
436 | 475 | 9.661563 | AGGATTTCAATACAAACTACATACGAA | 57.338 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
468 | 507 | 9.535878 | CACTCCCTCTGTTTCTAAATATAAGTC | 57.464 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
471 | 510 | 6.984474 | CGCACTCCCTCTGTTTCTAAATATAA | 59.016 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
473 | 512 | 5.104900 | ACGCACTCCCTCTGTTTCTAAATAT | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
476 | 515 | 2.367567 | ACGCACTCCCTCTGTTTCTAAA | 59.632 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
477 | 516 | 1.968493 | ACGCACTCCCTCTGTTTCTAA | 59.032 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
480 | 519 | 1.272769 | AGTACGCACTCCCTCTGTTTC | 59.727 | 52.381 | 0.00 | 0.00 | 0.00 | 2.78 |
482 | 521 | 1.817447 | GTAGTACGCACTCCCTCTGTT | 59.183 | 52.381 | 0.00 | 0.00 | 36.14 | 3.16 |
485 | 524 | 2.093106 | CAAGTAGTACGCACTCCCTCT | 58.907 | 52.381 | 0.00 | 0.00 | 36.14 | 3.69 |
488 | 527 | 0.175073 | CCCAAGTAGTACGCACTCCC | 59.825 | 60.000 | 0.00 | 0.00 | 36.14 | 4.30 |
490 | 529 | 0.531200 | AGCCCAAGTAGTACGCACTC | 59.469 | 55.000 | 0.00 | 0.00 | 36.14 | 3.51 |
491 | 530 | 0.974383 | AAGCCCAAGTAGTACGCACT | 59.026 | 50.000 | 0.00 | 0.00 | 38.91 | 4.40 |
494 | 533 | 1.471153 | GGAGAAGCCCAAGTAGTACGC | 60.471 | 57.143 | 0.00 | 0.00 | 0.00 | 4.42 |
495 | 534 | 2.099427 | GAGGAGAAGCCCAAGTAGTACG | 59.901 | 54.545 | 0.00 | 0.00 | 37.37 | 3.67 |
496 | 535 | 3.367321 | AGAGGAGAAGCCCAAGTAGTAC | 58.633 | 50.000 | 0.00 | 0.00 | 37.37 | 2.73 |
498 | 537 | 2.569404 | CAAGAGGAGAAGCCCAAGTAGT | 59.431 | 50.000 | 0.00 | 0.00 | 37.37 | 2.73 |
500 | 539 | 1.279271 | GCAAGAGGAGAAGCCCAAGTA | 59.721 | 52.381 | 0.00 | 0.00 | 37.37 | 2.24 |
501 | 540 | 0.037447 | GCAAGAGGAGAAGCCCAAGT | 59.963 | 55.000 | 0.00 | 0.00 | 37.37 | 3.16 |
504 | 543 | 1.376466 | GTGCAAGAGGAGAAGCCCA | 59.624 | 57.895 | 0.00 | 0.00 | 37.37 | 5.36 |
505 | 544 | 0.957888 | GTGTGCAAGAGGAGAAGCCC | 60.958 | 60.000 | 0.00 | 0.00 | 37.37 | 5.19 |
506 | 545 | 0.036022 | AGTGTGCAAGAGGAGAAGCC | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
507 | 546 | 1.155042 | CAGTGTGCAAGAGGAGAAGC | 58.845 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
509 | 548 | 2.027745 | GGATCAGTGTGCAAGAGGAGAA | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
510 | 549 | 1.552337 | GGATCAGTGTGCAAGAGGAGA | 59.448 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
511 | 550 | 1.554160 | AGGATCAGTGTGCAAGAGGAG | 59.446 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
512 | 551 | 1.649321 | AGGATCAGTGTGCAAGAGGA | 58.351 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
514 | 553 | 2.082231 | CCAAGGATCAGTGTGCAAGAG | 58.918 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
516 | 555 | 1.538512 | CACCAAGGATCAGTGTGCAAG | 59.461 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
517 | 556 | 1.608055 | CACCAAGGATCAGTGTGCAA | 58.392 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 |
518 | 557 | 3.327600 | CACCAAGGATCAGTGTGCA | 57.672 | 52.632 | 0.00 | 0.00 | 0.00 | 4.57 |
519 | 558 | 1.878775 | GCACCAAGGATCAGTGTGC | 59.121 | 57.895 | 11.42 | 11.42 | 44.53 | 4.57 |
520 | 559 | 1.915614 | GCGCACCAAGGATCAGTGTG | 61.916 | 60.000 | 0.30 | 11.42 | 43.25 | 3.82 |
521 | 560 | 1.672356 | GCGCACCAAGGATCAGTGT | 60.672 | 57.895 | 0.30 | 0.00 | 33.96 | 3.55 |
523 | 562 | 2.045926 | GGCGCACCAAGGATCAGT | 60.046 | 61.111 | 10.83 | 0.00 | 35.26 | 3.41 |
524 | 563 | 1.817099 | GAGGCGCACCAAGGATCAG | 60.817 | 63.158 | 10.83 | 0.00 | 39.06 | 2.90 |
525 | 564 | 2.268920 | GAGGCGCACCAAGGATCA | 59.731 | 61.111 | 10.83 | 0.00 | 39.06 | 2.92 |
526 | 565 | 1.817099 | CAGAGGCGCACCAAGGATC | 60.817 | 63.158 | 10.83 | 0.00 | 39.06 | 3.36 |
527 | 566 | 2.270205 | CAGAGGCGCACCAAGGAT | 59.730 | 61.111 | 10.83 | 0.00 | 39.06 | 3.24 |
530 | 569 | 3.429141 | CTGCAGAGGCGCACCAAG | 61.429 | 66.667 | 8.42 | 0.00 | 45.35 | 3.61 |
541 | 580 | 5.883336 | AATGTCATCATTTGCAGCTGCAGA | 61.883 | 41.667 | 37.42 | 34.38 | 41.94 | 4.26 |
546 | 585 | 3.064958 | CGAGAATGTCATCATTTGCAGCT | 59.935 | 43.478 | 0.00 | 0.00 | 43.33 | 4.24 |
547 | 586 | 3.360533 | CGAGAATGTCATCATTTGCAGC | 58.639 | 45.455 | 0.00 | 0.00 | 43.33 | 5.25 |
548 | 587 | 3.360533 | GCGAGAATGTCATCATTTGCAG | 58.639 | 45.455 | 0.00 | 0.00 | 43.33 | 4.41 |
550 | 589 | 2.369600 | CGCGAGAATGTCATCATTTGC | 58.630 | 47.619 | 0.00 | 0.00 | 43.33 | 3.68 |
553 | 592 | 0.940126 | GCCGCGAGAATGTCATCATT | 59.060 | 50.000 | 8.23 | 0.00 | 45.57 | 2.57 |
556 | 595 | 1.493950 | CCTGCCGCGAGAATGTCATC | 61.494 | 60.000 | 8.23 | 0.00 | 0.00 | 2.92 |
557 | 596 | 1.522355 | CCTGCCGCGAGAATGTCAT | 60.522 | 57.895 | 8.23 | 0.00 | 0.00 | 3.06 |
558 | 597 | 2.125552 | CCTGCCGCGAGAATGTCA | 60.126 | 61.111 | 8.23 | 0.00 | 0.00 | 3.58 |
559 | 598 | 3.567797 | GCCTGCCGCGAGAATGTC | 61.568 | 66.667 | 8.23 | 0.00 | 0.00 | 3.06 |
576 | 615 | 1.304464 | GAAAAGCTGGGGGAGGTGG | 60.304 | 63.158 | 0.00 | 0.00 | 30.84 | 4.61 |
577 | 616 | 0.610232 | CAGAAAAGCTGGGGGAGGTG | 60.610 | 60.000 | 0.00 | 0.00 | 41.07 | 4.00 |
578 | 617 | 0.772124 | TCAGAAAAGCTGGGGGAGGT | 60.772 | 55.000 | 0.00 | 0.00 | 44.98 | 3.85 |
582 | 621 | 1.074566 | ACTTCTCAGAAAAGCTGGGGG | 59.925 | 52.381 | 0.00 | 0.00 | 45.62 | 5.40 |
583 | 622 | 2.575805 | ACTTCTCAGAAAAGCTGGGG | 57.424 | 50.000 | 0.00 | 0.00 | 45.62 | 4.96 |
585 | 624 | 7.032377 | ACTAAAAACTTCTCAGAAAAGCTGG | 57.968 | 36.000 | 0.00 | 0.00 | 44.98 | 4.85 |
586 | 625 | 7.800847 | GCTACTAAAAACTTCTCAGAAAAGCTG | 59.199 | 37.037 | 0.00 | 0.00 | 46.31 | 4.24 |
587 | 626 | 7.499232 | TGCTACTAAAAACTTCTCAGAAAAGCT | 59.501 | 33.333 | 0.00 | 0.00 | 0.00 | 3.74 |
588 | 627 | 7.588123 | GTGCTACTAAAAACTTCTCAGAAAAGC | 59.412 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
590 | 629 | 8.395633 | GTGTGCTACTAAAAACTTCTCAGAAAA | 58.604 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
591 | 630 | 7.551262 | TGTGTGCTACTAAAAACTTCTCAGAAA | 59.449 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
593 | 632 | 6.479001 | GTGTGTGCTACTAAAAACTTCTCAGA | 59.521 | 38.462 | 0.00 | 0.00 | 0.00 | 3.27 |
594 | 633 | 6.480320 | AGTGTGTGCTACTAAAAACTTCTCAG | 59.520 | 38.462 | 0.00 | 0.00 | 0.00 | 3.35 |
595 | 634 | 6.346096 | AGTGTGTGCTACTAAAAACTTCTCA | 58.654 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
596 | 635 | 6.846325 | AGTGTGTGCTACTAAAAACTTCTC | 57.154 | 37.500 | 0.00 | 0.00 | 0.00 | 2.87 |
601 | 640 | 9.309796 | CGTTTATTAGTGTGTGCTACTAAAAAC | 57.690 | 33.333 | 4.65 | 4.65 | 42.13 | 2.43 |
606 | 645 | 5.418524 | TCCCGTTTATTAGTGTGTGCTACTA | 59.581 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
607 | 646 | 4.221262 | TCCCGTTTATTAGTGTGTGCTACT | 59.779 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
608 | 647 | 4.497300 | TCCCGTTTATTAGTGTGTGCTAC | 58.503 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
609 | 648 | 4.804868 | TCCCGTTTATTAGTGTGTGCTA | 57.195 | 40.909 | 0.00 | 0.00 | 0.00 | 3.49 |
610 | 649 | 3.688694 | TCCCGTTTATTAGTGTGTGCT | 57.311 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
611 | 650 | 3.749609 | ACTTCCCGTTTATTAGTGTGTGC | 59.250 | 43.478 | 0.00 | 0.00 | 0.00 | 4.57 |
613 | 652 | 4.687483 | CGAACTTCCCGTTTATTAGTGTGT | 59.313 | 41.667 | 0.00 | 0.00 | 35.56 | 3.72 |
616 | 655 | 3.063045 | GGCGAACTTCCCGTTTATTAGTG | 59.937 | 47.826 | 0.00 | 0.00 | 35.56 | 2.74 |
618 | 657 | 2.610833 | GGGCGAACTTCCCGTTTATTAG | 59.389 | 50.000 | 0.00 | 0.00 | 35.56 | 1.73 |
621 | 660 | 3.164026 | GGGCGAACTTCCCGTTTAT | 57.836 | 52.632 | 0.00 | 0.00 | 35.56 | 1.40 |
622 | 661 | 4.699626 | GGGCGAACTTCCCGTTTA | 57.300 | 55.556 | 0.00 | 0.00 | 35.56 | 2.01 |
756 | 1458 | 2.170817 | GGCTATTTTCTTCGAGGGGTCT | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
759 | 1461 | 2.710096 | TGGCTATTTTCTTCGAGGGG | 57.290 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
811 | 1559 | 3.690460 | CTTCTACCAGGTGGATTGCTTT | 58.310 | 45.455 | 6.46 | 0.00 | 38.94 | 3.51 |
815 | 1563 | 3.274288 | GAAGCTTCTACCAGGTGGATTG | 58.726 | 50.000 | 19.44 | 4.46 | 38.94 | 2.67 |
816 | 1564 | 2.912956 | TGAAGCTTCTACCAGGTGGATT | 59.087 | 45.455 | 26.09 | 0.00 | 38.94 | 3.01 |
821 | 2851 | 2.711547 | ACCTTTGAAGCTTCTACCAGGT | 59.288 | 45.455 | 26.09 | 23.45 | 0.00 | 4.00 |
837 | 2867 | 2.243736 | TCAAACTGGGAAGTGGACCTTT | 59.756 | 45.455 | 0.00 | 0.00 | 32.03 | 3.11 |
958 | 6599 | 7.935755 | TCTGCTATGATATTTGGAGAAAGAAGG | 59.064 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
963 | 6609 | 6.484643 | GTGCTCTGCTATGATATTTGGAGAAA | 59.515 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
1360 | 7011 | 3.098377 | TGGCAGCATGGTTTACAATGAT | 58.902 | 40.909 | 0.00 | 0.00 | 35.86 | 2.45 |
1434 | 7097 | 3.673809 | CGGTACTAGTGTTGTTTCTGCTC | 59.326 | 47.826 | 5.39 | 0.00 | 0.00 | 4.26 |
1492 | 7155 | 0.692419 | AGGTCGGATGATGGGCTCTT | 60.692 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1581 | 7250 | 1.837439 | TGGTGACTGAAACCAGTGACT | 59.163 | 47.619 | 13.17 | 0.00 | 44.59 | 3.41 |
1693 | 7368 | 5.248380 | AGCCAATATTCTACCAAGGGATC | 57.752 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
1795 | 7470 | 4.603131 | ACATATGTTGGGTTCATCAAGCT | 58.397 | 39.130 | 1.41 | 0.00 | 0.00 | 3.74 |
2144 | 7834 | 4.142687 | GGAACATGTCCGTTGAACTTATGG | 60.143 | 45.833 | 0.00 | 0.00 | 36.40 | 2.74 |
2230 | 7920 | 1.336240 | ACAAGCTTCTTCGCATTTGCC | 60.336 | 47.619 | 0.00 | 0.00 | 37.91 | 4.52 |
2487 | 8178 | 4.019681 | TGTTCCTCCGATTCTAACAACCAT | 60.020 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
2529 | 8225 | 7.870509 | TGATTATCATAGAATAATGGCAGCC | 57.129 | 36.000 | 3.66 | 3.66 | 33.10 | 4.85 |
2548 | 8244 | 2.432444 | CCGCCAACACTTCCTTGATTA | 58.568 | 47.619 | 0.00 | 0.00 | 0.00 | 1.75 |
2604 | 8300 | 6.115450 | ACGTTTCAGAGAAGTTTTTGGTAC | 57.885 | 37.500 | 0.00 | 0.00 | 0.00 | 3.34 |
2608 | 8304 | 6.687105 | CACCTAACGTTTCAGAGAAGTTTTTG | 59.313 | 38.462 | 5.91 | 0.00 | 0.00 | 2.44 |
2625 | 8321 | 3.379057 | ACCAAAACTTCCAACACCTAACG | 59.621 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
2882 | 8578 | 4.229096 | CAATTCAGGACGACAACATTTGG | 58.771 | 43.478 | 0.00 | 0.00 | 34.12 | 3.28 |
3004 | 8703 | 4.880120 | AGTGATGCATCCAGAAGTATGTTG | 59.120 | 41.667 | 23.67 | 0.00 | 0.00 | 3.33 |
3041 | 8740 | 0.823356 | GCTGCCAACCCAAAGTCTGA | 60.823 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3127 | 8827 | 1.825474 | GCCACTCTAGTAAGCCACTCA | 59.175 | 52.381 | 0.00 | 0.00 | 38.80 | 3.41 |
3140 | 8840 | 1.557099 | TTCGGTGTGATAGCCACTCT | 58.443 | 50.000 | 0.00 | 0.00 | 45.86 | 3.24 |
3167 | 8867 | 0.393808 | ACCATGCCGAAGCCGTAAAT | 60.394 | 50.000 | 0.00 | 0.00 | 38.69 | 1.40 |
3244 | 8944 | 1.972872 | AGTTACTGTTGCTGCTGCTT | 58.027 | 45.000 | 17.00 | 0.00 | 40.48 | 3.91 |
3263 | 8972 | 6.382859 | TGCACAGGGAAGTACTCAATATTCTA | 59.617 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
3363 | 9075 | 2.440409 | TGCAAATCCTTTCAGCCTCTC | 58.560 | 47.619 | 0.00 | 0.00 | 0.00 | 3.20 |
3588 | 9305 | 8.258007 | TCCTGTCCACATTACAACTTATAAGAG | 58.742 | 37.037 | 19.38 | 12.70 | 0.00 | 2.85 |
3594 | 9311 | 5.308497 | TCCTTCCTGTCCACATTACAACTTA | 59.692 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3610 | 9327 | 3.968265 | TGCCTTCCTTTATTCCTTCCTG | 58.032 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
3751 | 9477 | 2.196595 | CAAGTTCCCATCCCAGGTCTA | 58.803 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
3800 | 9526 | 7.767261 | TGTTGTAGTTTTATTGTGAGCAGTTT | 58.233 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
3820 | 9546 | 3.088194 | CAGAACTGCAGCAATTGTTGT | 57.912 | 42.857 | 21.37 | 3.69 | 0.00 | 3.32 |
3856 | 9582 | 5.102953 | TCAACCCATATCTTTCAGACCTG | 57.897 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
3898 | 9624 | 6.266558 | TGAAAATACCTGGCAATTGTACAACT | 59.733 | 34.615 | 11.22 | 0.00 | 0.00 | 3.16 |
3900 | 9626 | 6.656632 | TGAAAATACCTGGCAATTGTACAA | 57.343 | 33.333 | 11.41 | 11.41 | 0.00 | 2.41 |
3974 | 9700 | 6.762187 | TGTCATTTCAGCACAACATTGAAATT | 59.238 | 30.769 | 8.49 | 0.00 | 44.69 | 1.82 |
4064 | 9790 | 4.187694 | TGCATGGTGTGGAAAAGAAAAAC | 58.812 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
4083 | 9809 | 9.698309 | TTCCAAACGAGAAAATTTTTATATGCA | 57.302 | 25.926 | 4.63 | 0.00 | 0.00 | 3.96 |
4090 | 9816 | 8.180920 | CCACATTTTCCAAACGAGAAAATTTTT | 58.819 | 29.630 | 4.63 | 0.00 | 46.62 | 1.94 |
4093 | 9819 | 6.578023 | TCCACATTTTCCAAACGAGAAAATT | 58.422 | 32.000 | 8.37 | 0.47 | 46.62 | 1.82 |
4095 | 9821 | 5.584253 | TCCACATTTTCCAAACGAGAAAA | 57.416 | 34.783 | 1.57 | 1.57 | 44.76 | 2.29 |
4102 | 9828 | 5.691754 | GTGATCAGTTCCACATTTTCCAAAC | 59.308 | 40.000 | 0.00 | 0.00 | 33.72 | 2.93 |
4156 | 9882 | 9.628500 | AGTTGACCAAGTAGAAGAAATTTACTT | 57.372 | 29.630 | 0.00 | 0.00 | 37.95 | 2.24 |
4167 | 9893 | 4.165372 | ACCTTCCAAGTTGACCAAGTAGAA | 59.835 | 41.667 | 3.87 | 0.00 | 0.00 | 2.10 |
4203 | 9929 | 8.044060 | TCTGCACAAGAAATTTCTACCTTATG | 57.956 | 34.615 | 20.76 | 15.70 | 36.28 | 1.90 |
4421 | 10153 | 7.092137 | TCATGAGAATCGCAGAAAAATGAAT | 57.908 | 32.000 | 0.00 | 0.00 | 43.58 | 2.57 |
4459 | 10191 | 3.441572 | CAGCTTCCTCATTCAACCGAATT | 59.558 | 43.478 | 0.00 | 0.00 | 39.96 | 2.17 |
4464 | 10196 | 1.831580 | AGCAGCTTCCTCATTCAACC | 58.168 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
4499 | 10231 | 2.369860 | TCAGCACATGACCTCTTGACTT | 59.630 | 45.455 | 0.00 | 0.00 | 31.12 | 3.01 |
4502 | 10234 | 1.277273 | CCTCAGCACATGACCTCTTGA | 59.723 | 52.381 | 0.00 | 0.00 | 33.22 | 3.02 |
4509 | 10241 | 1.748122 | CTGCCCCTCAGCACATGAC | 60.748 | 63.158 | 0.00 | 0.00 | 38.00 | 3.06 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.