Multiple sequence alignment - TraesCS1B01G017200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G017200 chr1B 100.000 6730 0 0 778 7507 8249060 8255789 0.000000e+00 12429.0
1 TraesCS1B01G017200 chr1B 100.000 387 0 0 1 387 8248283 8248669 0.000000e+00 715.0
2 TraesCS1B01G017200 chr1B 89.583 288 16 6 1801 2074 337331889 337331602 3.330000e-93 353.0
3 TraesCS1B01G017200 chr1B 100.000 29 0 0 169 197 269316692 269316720 4.000000e-03 54.7
4 TraesCS1B01G017200 chr1A 92.720 2143 108 27 5403 7507 7183395 7185527 0.000000e+00 3049.0
5 TraesCS1B01G017200 chr1A 93.925 1926 80 12 3448 5369 7181359 7183251 0.000000e+00 2874.0
6 TraesCS1B01G017200 chr1A 97.248 1381 33 5 2072 3448 7179897 7181276 0.000000e+00 2335.0
7 TraesCS1B01G017200 chr1A 94.813 1311 50 7 779 2074 7178410 7179717 0.000000e+00 2028.0
8 TraesCS1B01G017200 chr1A 93.494 538 31 2 1222 1755 6977661 6978198 0.000000e+00 797.0
9 TraesCS1B01G017200 chr1A 94.545 385 21 0 811 1195 6977285 6977669 5.010000e-166 595.0
10 TraesCS1B01G017200 chr1A 89.583 288 16 6 1801 2074 488853710 488853423 3.330000e-93 353.0
11 TraesCS1B01G017200 chr1A 92.661 109 7 1 279 387 7178189 7178296 1.010000e-33 156.0
12 TraesCS1B01G017200 chr1A 91.071 112 4 2 279 386 6977022 6977131 6.070000e-31 147.0
13 TraesCS1B01G017200 chr1D 93.925 1926 84 16 3448 5369 5514429 5516325 0.000000e+00 2878.0
14 TraesCS1B01G017200 chr1D 89.617 2090 134 40 5457 7507 5516335 5518380 0.000000e+00 2580.0
15 TraesCS1B01G017200 chr1D 96.408 1392 33 12 2072 3448 5512969 5514358 0.000000e+00 2278.0
16 TraesCS1B01G017200 chr1D 96.108 1259 39 4 779 2030 5511472 5512727 0.000000e+00 2045.0
17 TraesCS1B01G017200 chr1D 90.625 288 13 5 1801 2074 264356947 264357234 3.310000e-98 370.0
18 TraesCS1B01G017200 chr1D 92.982 114 2 2 279 387 5511258 5511370 2.170000e-35 161.0
19 TraesCS1B01G017200 chr1D 93.333 75 5 0 5377 5451 253526020 253525946 2.210000e-20 111.0
20 TraesCS1B01G017200 chr7D 91.349 289 9 6 1801 2074 443545749 443545462 1.530000e-101 381.0
21 TraesCS1B01G017200 chr7D 95.833 120 4 1 2072 2190 443545282 443545163 7.690000e-45 193.0
22 TraesCS1B01G017200 chr3D 91.319 288 11 4 1801 2074 555196711 555196998 1.530000e-101 381.0
23 TraesCS1B01G017200 chr3D 90.625 288 13 5 1801 2074 550608301 550608014 3.310000e-98 370.0
24 TraesCS1B01G017200 chr3D 96.667 120 3 1 2072 2190 550607834 550607715 1.650000e-46 198.0
25 TraesCS1B01G017200 chr3D 95.833 120 4 1 2072 2190 555197178 555197297 7.690000e-45 193.0
26 TraesCS1B01G017200 chr3D 95.833 120 4 1 2072 2190 555231743 555231624 7.690000e-45 193.0
27 TraesCS1B01G017200 chr4D 90.972 288 12 5 1801 2074 154755610 154755323 7.110000e-100 375.0
28 TraesCS1B01G017200 chr4D 88.889 288 18 6 1801 2074 282606323 282606036 7.210000e-90 342.0
29 TraesCS1B01G017200 chr2D 90.278 288 14 5 1801 2074 385100535 385100822 1.540000e-96 364.0
30 TraesCS1B01G017200 chr2D 94.872 39 2 0 5369 5407 642205504 642205466 2.260000e-05 62.1
31 TraesCS1B01G017200 chr6D 89.583 288 15 7 1801 2074 412532494 412532780 1.200000e-92 351.0
32 TraesCS1B01G017200 chr6D 95.833 120 4 1 2072 2190 297945893 297946012 7.690000e-45 193.0
33 TraesCS1B01G017200 chr6D 88.406 138 16 0 6951 7088 147237846 147237709 4.660000e-37 167.0
34 TraesCS1B01G017200 chr6D 95.181 83 3 1 7137 7219 147237701 147237620 6.110000e-26 130.0
35 TraesCS1B01G017200 chr4A 87.889 289 20 10 1801 2074 722722074 722722362 7.260000e-85 326.0
36 TraesCS1B01G017200 chr5B 82.746 284 39 5 6383 6659 670232970 670233250 2.090000e-60 244.0
37 TraesCS1B01G017200 chr5D 83.594 256 34 7 6012 6260 530925660 530925914 4.530000e-57 233.0
38 TraesCS1B01G017200 chr6B 94.531 128 4 3 2072 2198 178505776 178505901 2.140000e-45 195.0
39 TraesCS1B01G017200 chr6B 92.647 68 5 0 7162 7229 257995817 257995884 1.720000e-16 99.0
40 TraesCS1B01G017200 chrUn 95.833 120 4 1 2072 2190 99233804 99233923 7.690000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G017200 chr1B 8248283 8255789 7506 False 6572.0 12429 100.000000 1 7507 2 chr1B.!!$F2 7506
1 TraesCS1B01G017200 chr1A 7178189 7185527 7338 False 2088.4 3049 94.273400 279 7507 5 chr1A.!!$F2 7228
2 TraesCS1B01G017200 chr1A 6977022 6978198 1176 False 513.0 797 93.036667 279 1755 3 chr1A.!!$F1 1476
3 TraesCS1B01G017200 chr1D 5511258 5518380 7122 False 1988.4 2878 93.808000 279 7507 5 chr1D.!!$F2 7228
4 TraesCS1B01G017200 chr7D 443545163 443545749 586 True 287.0 381 93.591000 1801 2190 2 chr7D.!!$R1 389
5 TraesCS1B01G017200 chr3D 555196711 555197297 586 False 287.0 381 93.576000 1801 2190 2 chr3D.!!$F1 389
6 TraesCS1B01G017200 chr3D 550607715 550608301 586 True 284.0 370 93.646000 1801 2190 2 chr3D.!!$R2 389

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.037419 TGGCCGACCCGTTTACTAAC 60.037 55.0 0.00 0.00 35.87 2.34 F
1575 1597 0.034896 ACTTGCAGACCGTTCCGATT 59.965 50.0 0.00 0.00 0.00 3.34 F
2821 3065 0.961019 CTTGGCTGGCTGCTTTGTAA 59.039 50.0 16.14 3.97 42.39 2.41 F
3756 4085 1.128188 ACGGACTCCCAGGAAGCTTT 61.128 55.0 0.00 0.00 0.00 3.51 F
4681 5013 0.672401 ATTAAGTGCCACCGGTCGTG 60.672 55.0 2.59 0.00 42.62 4.35 F
5173 5505 1.260544 ATGGCTGGAAAAGGTCTTGC 58.739 50.0 0.00 0.00 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1976 2007 0.178998 AGGGAGCTGCCTGCATATTG 60.179 55.000 27.99 0.00 45.94 1.90 R
2895 3139 2.028385 AGAAACGGCAAGTTATCCTCGT 60.028 45.455 0.00 0.00 43.37 4.18 R
4052 4381 0.038892 GTTGAACTGCCATGCCAGTG 60.039 55.000 10.54 0.00 44.86 3.66 R
5443 5887 0.881796 GCTGTTGCAACTTACTCCCC 59.118 55.000 28.61 0.95 39.41 4.81 R
6088 6543 0.255890 TATTGCAAGCCAGACCTCCC 59.744 55.000 4.94 0.00 0.00 4.30 R
6982 7464 0.088530 CGTCTTACGTGTTTCGACGC 59.911 55.000 0.00 0.00 43.33 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.905480 GTCTTAAAAACCAGCCAAACATG 57.095 39.130 0.00 0.00 0.00 3.21
23 24 4.211164 GTCTTAAAAACCAGCCAAACATGC 59.789 41.667 0.00 0.00 0.00 4.06
24 25 4.100808 TCTTAAAAACCAGCCAAACATGCT 59.899 37.500 0.00 0.00 40.41 3.79
25 26 5.303078 TCTTAAAAACCAGCCAAACATGCTA 59.697 36.000 0.00 0.00 36.81 3.49
26 27 4.414337 AAAAACCAGCCAAACATGCTAA 57.586 36.364 0.00 0.00 36.81 3.09
27 28 4.414337 AAAACCAGCCAAACATGCTAAA 57.586 36.364 0.00 0.00 36.81 1.85
28 29 3.665745 AACCAGCCAAACATGCTAAAG 57.334 42.857 0.00 0.00 36.81 1.85
29 30 2.875296 ACCAGCCAAACATGCTAAAGA 58.125 42.857 0.00 0.00 36.81 2.52
30 31 3.230134 ACCAGCCAAACATGCTAAAGAA 58.770 40.909 0.00 0.00 36.81 2.52
31 32 3.640967 ACCAGCCAAACATGCTAAAGAAA 59.359 39.130 0.00 0.00 36.81 2.52
32 33 4.100808 ACCAGCCAAACATGCTAAAGAAAA 59.899 37.500 0.00 0.00 36.81 2.29
33 34 5.221702 ACCAGCCAAACATGCTAAAGAAAAT 60.222 36.000 0.00 0.00 36.81 1.82
34 35 6.014669 ACCAGCCAAACATGCTAAAGAAAATA 60.015 34.615 0.00 0.00 36.81 1.40
35 36 7.043565 CCAGCCAAACATGCTAAAGAAAATAT 58.956 34.615 0.00 0.00 36.81 1.28
36 37 7.010738 CCAGCCAAACATGCTAAAGAAAATATG 59.989 37.037 0.00 0.00 36.81 1.78
37 38 6.536224 AGCCAAACATGCTAAAGAAAATATGC 59.464 34.615 0.00 0.00 37.28 3.14
38 39 6.313411 GCCAAACATGCTAAAGAAAATATGCA 59.687 34.615 0.00 0.00 34.88 3.96
39 40 7.011669 GCCAAACATGCTAAAGAAAATATGCAT 59.988 33.333 3.79 3.79 41.08 3.96
40 41 8.545420 CCAAACATGCTAAAGAAAATATGCATC 58.455 33.333 0.19 0.00 38.82 3.91
41 42 8.545420 CAAACATGCTAAAGAAAATATGCATCC 58.455 33.333 0.19 0.00 38.82 3.51
42 43 6.752168 ACATGCTAAAGAAAATATGCATCCC 58.248 36.000 0.19 0.00 38.82 3.85
43 44 6.324512 ACATGCTAAAGAAAATATGCATCCCA 59.675 34.615 0.19 0.00 38.82 4.37
44 45 6.788598 TGCTAAAGAAAATATGCATCCCAA 57.211 33.333 0.19 0.00 0.00 4.12
45 46 6.572519 TGCTAAAGAAAATATGCATCCCAAC 58.427 36.000 0.19 0.00 0.00 3.77
46 47 6.154192 TGCTAAAGAAAATATGCATCCCAACA 59.846 34.615 0.19 0.00 0.00 3.33
47 48 7.041107 GCTAAAGAAAATATGCATCCCAACAA 58.959 34.615 0.19 0.00 0.00 2.83
48 49 7.223387 GCTAAAGAAAATATGCATCCCAACAAG 59.777 37.037 0.19 0.00 0.00 3.16
49 50 5.603170 AGAAAATATGCATCCCAACAAGG 57.397 39.130 0.19 0.00 37.03 3.61
50 51 5.025453 AGAAAATATGCATCCCAACAAGGT 58.975 37.500 0.19 0.00 34.66 3.50
51 52 6.194235 AGAAAATATGCATCCCAACAAGGTA 58.806 36.000 0.19 0.00 34.66 3.08
52 53 6.667414 AGAAAATATGCATCCCAACAAGGTAA 59.333 34.615 0.19 0.00 34.66 2.85
53 54 6.469782 AAATATGCATCCCAACAAGGTAAG 57.530 37.500 0.19 0.00 34.66 2.34
54 55 1.544724 TGCATCCCAACAAGGTAAGC 58.455 50.000 0.00 0.00 34.66 3.09
55 56 1.202989 TGCATCCCAACAAGGTAAGCA 60.203 47.619 0.00 0.00 34.30 3.91
56 57 2.102578 GCATCCCAACAAGGTAAGCAT 58.897 47.619 0.00 0.00 34.66 3.79
57 58 2.159198 GCATCCCAACAAGGTAAGCATG 60.159 50.000 0.00 0.00 34.66 4.06
58 59 2.969821 TCCCAACAAGGTAAGCATGT 57.030 45.000 0.00 0.00 34.66 3.21
59 60 2.790433 TCCCAACAAGGTAAGCATGTC 58.210 47.619 0.00 0.00 34.66 3.06
60 61 2.107378 TCCCAACAAGGTAAGCATGTCA 59.893 45.455 0.00 0.00 34.66 3.58
61 62 3.091545 CCCAACAAGGTAAGCATGTCAT 58.908 45.455 0.00 0.00 34.66 3.06
62 63 3.119388 CCCAACAAGGTAAGCATGTCATG 60.119 47.826 8.56 8.56 34.66 3.07
63 64 3.119388 CCAACAAGGTAAGCATGTCATGG 60.119 47.826 14.64 0.00 0.00 3.66
64 65 2.094675 ACAAGGTAAGCATGTCATGGC 58.905 47.619 14.64 6.99 0.00 4.40
65 66 1.406539 CAAGGTAAGCATGTCATGGCC 59.593 52.381 14.64 0.00 0.00 5.36
66 67 0.464373 AGGTAAGCATGTCATGGCCG 60.464 55.000 14.64 0.00 0.00 6.13
67 68 0.463654 GGTAAGCATGTCATGGCCGA 60.464 55.000 14.64 0.00 0.00 5.54
68 69 0.657840 GTAAGCATGTCATGGCCGAC 59.342 55.000 14.64 0.11 36.40 4.79
69 70 0.463654 TAAGCATGTCATGGCCGACC 60.464 55.000 14.64 0.00 34.88 4.79
70 71 3.211963 GCATGTCATGGCCGACCC 61.212 66.667 14.64 0.00 34.88 4.46
71 72 2.896854 CATGTCATGGCCGACCCG 60.897 66.667 4.78 0.00 34.88 5.28
72 73 3.399181 ATGTCATGGCCGACCCGT 61.399 61.111 8.15 0.00 34.88 5.28
73 74 2.966732 ATGTCATGGCCGACCCGTT 61.967 57.895 8.15 0.00 34.88 4.44
74 75 2.359478 GTCATGGCCGACCCGTTT 60.359 61.111 0.00 0.00 35.87 3.60
75 76 1.078988 GTCATGGCCGACCCGTTTA 60.079 57.895 0.00 0.00 35.87 2.01
76 77 1.078988 TCATGGCCGACCCGTTTAC 60.079 57.895 0.00 0.00 35.87 2.01
77 78 1.078708 CATGGCCGACCCGTTTACT 60.079 57.895 0.00 0.00 35.87 2.24
78 79 0.176219 CATGGCCGACCCGTTTACTA 59.824 55.000 0.00 0.00 35.87 1.82
79 80 0.903942 ATGGCCGACCCGTTTACTAA 59.096 50.000 0.00 0.00 35.87 2.24
80 81 0.037419 TGGCCGACCCGTTTACTAAC 60.037 55.000 0.00 0.00 35.87 2.34
81 82 0.247460 GGCCGACCCGTTTACTAACT 59.753 55.000 0.00 0.00 31.89 2.24
82 83 1.476488 GGCCGACCCGTTTACTAACTA 59.524 52.381 0.00 0.00 31.89 2.24
83 84 2.480244 GGCCGACCCGTTTACTAACTAG 60.480 54.545 0.00 0.00 31.89 2.57
84 85 2.480244 GCCGACCCGTTTACTAACTAGG 60.480 54.545 0.00 0.00 33.71 3.02
85 86 2.755103 CCGACCCGTTTACTAACTAGGT 59.245 50.000 0.00 0.00 39.73 3.08
86 87 3.181496 CCGACCCGTTTACTAACTAGGTC 60.181 52.174 13.06 13.06 44.16 3.85
87 88 4.021191 GACCCGTTTACTAACTAGGTCG 57.979 50.000 9.74 0.00 41.46 4.79
88 89 3.421844 ACCCGTTTACTAACTAGGTCGT 58.578 45.455 0.00 0.00 35.04 4.34
89 90 3.191371 ACCCGTTTACTAACTAGGTCGTG 59.809 47.826 0.00 0.00 35.04 4.35
90 91 3.174375 CCGTTTACTAACTAGGTCGTGC 58.826 50.000 0.00 0.00 31.89 5.34
91 92 3.174375 CGTTTACTAACTAGGTCGTGCC 58.826 50.000 0.00 0.00 32.78 5.01
100 101 4.162690 GGTCGTGCCTAGGCTGGG 62.163 72.222 33.07 21.43 42.51 4.45
101 102 3.075005 GTCGTGCCTAGGCTGGGA 61.075 66.667 33.07 23.21 42.51 4.37
102 103 2.759973 TCGTGCCTAGGCTGGGAG 60.760 66.667 33.07 18.97 42.51 4.30
103 104 3.077556 CGTGCCTAGGCTGGGAGT 61.078 66.667 33.07 0.00 42.51 3.85
104 105 1.756950 CGTGCCTAGGCTGGGAGTA 60.757 63.158 33.07 9.58 42.51 2.59
105 106 1.823976 GTGCCTAGGCTGGGAGTAC 59.176 63.158 33.07 17.90 42.51 2.73
106 107 0.976073 GTGCCTAGGCTGGGAGTACA 60.976 60.000 33.07 7.98 42.51 2.90
107 108 0.687757 TGCCTAGGCTGGGAGTACAG 60.688 60.000 33.07 0.00 42.51 2.74
113 114 4.578913 CTGGGAGTACAGCACACG 57.421 61.111 0.00 0.00 0.00 4.49
114 115 1.079819 CTGGGAGTACAGCACACGG 60.080 63.158 0.00 0.00 0.00 4.94
115 116 2.264794 GGGAGTACAGCACACGGG 59.735 66.667 0.00 0.00 0.00 5.28
116 117 2.434359 GGAGTACAGCACACGGGC 60.434 66.667 0.00 0.00 0.00 6.13
117 118 2.434359 GAGTACAGCACACGGGCC 60.434 66.667 0.00 0.00 0.00 5.80
118 119 4.373116 AGTACAGCACACGGGCCG 62.373 66.667 27.06 27.06 0.00 6.13
119 120 4.367023 GTACAGCACACGGGCCGA 62.367 66.667 35.78 3.72 0.00 5.54
120 121 4.367023 TACAGCACACGGGCCGAC 62.367 66.667 35.78 18.33 0.00 4.79
137 138 3.740397 CACGACACGGCCCGTCTA 61.740 66.667 5.41 0.00 38.32 2.59
138 139 2.985282 ACGACACGGCCCGTCTAA 60.985 61.111 5.41 0.00 38.32 2.10
139 140 2.345760 ACGACACGGCCCGTCTAAT 61.346 57.895 5.41 0.00 38.32 1.73
140 141 1.031571 ACGACACGGCCCGTCTAATA 61.032 55.000 5.41 0.00 38.32 0.98
141 142 0.593263 CGACACGGCCCGTCTAATAC 60.593 60.000 5.41 0.00 38.32 1.89
142 143 0.743097 GACACGGCCCGTCTAATACT 59.257 55.000 5.41 0.00 38.32 2.12
143 144 0.743097 ACACGGCCCGTCTAATACTC 59.257 55.000 5.41 0.00 38.32 2.59
144 145 0.742505 CACGGCCCGTCTAATACTCA 59.257 55.000 5.41 0.00 38.32 3.41
145 146 1.340248 CACGGCCCGTCTAATACTCAT 59.660 52.381 5.41 0.00 38.32 2.90
146 147 2.037144 ACGGCCCGTCTAATACTCATT 58.963 47.619 1.02 0.00 33.69 2.57
147 148 2.035576 ACGGCCCGTCTAATACTCATTC 59.964 50.000 1.02 0.00 33.69 2.67
148 149 2.035449 CGGCCCGTCTAATACTCATTCA 59.965 50.000 0.00 0.00 0.00 2.57
149 150 3.654414 GGCCCGTCTAATACTCATTCAG 58.346 50.000 0.00 0.00 0.00 3.02
150 151 3.060602 GCCCGTCTAATACTCATTCAGC 58.939 50.000 0.00 0.00 0.00 4.26
151 152 3.309388 CCCGTCTAATACTCATTCAGCG 58.691 50.000 0.00 0.00 0.00 5.18
152 153 3.004419 CCCGTCTAATACTCATTCAGCGA 59.996 47.826 0.00 0.00 0.00 4.93
153 154 3.975670 CCGTCTAATACTCATTCAGCGAC 59.024 47.826 0.00 0.00 0.00 5.19
154 155 4.497507 CCGTCTAATACTCATTCAGCGACA 60.498 45.833 0.00 0.00 0.00 4.35
155 156 5.034797 CGTCTAATACTCATTCAGCGACAA 58.965 41.667 0.00 0.00 0.00 3.18
156 157 5.052304 CGTCTAATACTCATTCAGCGACAAC 60.052 44.000 0.00 0.00 0.00 3.32
157 158 5.805486 GTCTAATACTCATTCAGCGACAACA 59.195 40.000 0.00 0.00 0.00 3.33
158 159 6.310467 GTCTAATACTCATTCAGCGACAACAA 59.690 38.462 0.00 0.00 0.00 2.83
159 160 5.940192 AATACTCATTCAGCGACAACAAA 57.060 34.783 0.00 0.00 0.00 2.83
160 161 6.500684 AATACTCATTCAGCGACAACAAAT 57.499 33.333 0.00 0.00 0.00 2.32
161 162 7.609760 AATACTCATTCAGCGACAACAAATA 57.390 32.000 0.00 0.00 0.00 1.40
162 163 7.792374 ATACTCATTCAGCGACAACAAATAT 57.208 32.000 0.00 0.00 0.00 1.28
163 164 5.872635 ACTCATTCAGCGACAACAAATATG 58.127 37.500 0.00 0.00 0.00 1.78
164 165 5.163723 ACTCATTCAGCGACAACAAATATGG 60.164 40.000 0.00 0.00 0.00 2.74
165 166 4.940654 TCATTCAGCGACAACAAATATGGA 59.059 37.500 0.00 0.00 0.00 3.41
166 167 4.678509 TTCAGCGACAACAAATATGGAC 57.321 40.909 0.00 0.00 0.00 4.02
167 168 3.937814 TCAGCGACAACAAATATGGACT 58.062 40.909 0.00 0.00 0.00 3.85
168 169 3.684305 TCAGCGACAACAAATATGGACTG 59.316 43.478 0.00 0.00 0.00 3.51
169 170 3.436704 CAGCGACAACAAATATGGACTGT 59.563 43.478 0.00 0.00 0.00 3.55
170 171 3.684788 AGCGACAACAAATATGGACTGTC 59.315 43.478 0.00 0.00 34.24 3.51
171 172 3.684788 GCGACAACAAATATGGACTGTCT 59.315 43.478 7.85 0.00 34.86 3.41
172 173 4.868171 GCGACAACAAATATGGACTGTCTA 59.132 41.667 7.85 1.29 34.86 2.59
173 174 5.005779 GCGACAACAAATATGGACTGTCTAG 59.994 44.000 7.85 0.00 34.86 2.43
174 175 6.330278 CGACAACAAATATGGACTGTCTAGA 58.670 40.000 7.85 0.00 34.86 2.43
175 176 6.980978 CGACAACAAATATGGACTGTCTAGAT 59.019 38.462 7.85 1.21 34.86 1.98
176 177 8.135529 CGACAACAAATATGGACTGTCTAGATA 58.864 37.037 7.85 0.00 34.86 1.98
177 178 9.250624 GACAACAAATATGGACTGTCTAGATAC 57.749 37.037 7.85 0.00 34.51 2.24
178 179 8.758829 ACAACAAATATGGACTGTCTAGATACA 58.241 33.333 7.85 0.00 0.00 2.29
179 180 9.770097 CAACAAATATGGACTGTCTAGATACAT 57.230 33.333 7.85 4.24 0.00 2.29
180 181 9.988815 AACAAATATGGACTGTCTAGATACATC 57.011 33.333 7.85 0.00 0.00 3.06
181 182 9.373450 ACAAATATGGACTGTCTAGATACATCT 57.627 33.333 7.85 0.00 40.86 2.90
182 183 9.636879 CAAATATGGACTGTCTAGATACATCTG 57.363 37.037 7.85 0.00 37.76 2.90
183 184 8.948401 AATATGGACTGTCTAGATACATCTGT 57.052 34.615 7.85 0.00 37.76 3.41
184 185 8.948401 ATATGGACTGTCTAGATACATCTGTT 57.052 34.615 7.85 0.00 37.76 3.16
185 186 7.667575 ATGGACTGTCTAGATACATCTGTTT 57.332 36.000 7.85 0.00 37.76 2.83
186 187 7.101652 TGGACTGTCTAGATACATCTGTTTC 57.898 40.000 7.85 0.00 37.76 2.78
187 188 6.663523 TGGACTGTCTAGATACATCTGTTTCA 59.336 38.462 7.85 0.00 37.76 2.69
188 189 7.148000 TGGACTGTCTAGATACATCTGTTTCAG 60.148 40.741 7.85 7.61 37.76 3.02
189 190 6.568869 ACTGTCTAGATACATCTGTTTCAGC 58.431 40.000 0.00 0.00 37.76 4.26
190 191 6.153510 ACTGTCTAGATACATCTGTTTCAGCA 59.846 38.462 0.00 0.00 37.76 4.41
191 192 6.935167 TGTCTAGATACATCTGTTTCAGCAA 58.065 36.000 0.00 0.00 37.76 3.91
192 193 6.813649 TGTCTAGATACATCTGTTTCAGCAAC 59.186 38.462 0.00 0.00 37.76 4.17
193 194 6.813649 GTCTAGATACATCTGTTTCAGCAACA 59.186 38.462 0.00 0.00 43.55 3.33
194 195 7.331934 GTCTAGATACATCTGTTTCAGCAACAA 59.668 37.037 0.00 0.00 45.11 2.83
195 196 6.246420 AGATACATCTGTTTCAGCAACAAC 57.754 37.500 4.07 0.00 45.11 3.32
196 197 6.000219 AGATACATCTGTTTCAGCAACAACT 59.000 36.000 4.07 0.00 45.11 3.16
197 198 4.297299 ACATCTGTTTCAGCAACAACTG 57.703 40.909 0.00 0.00 45.11 3.16
198 199 3.067180 ACATCTGTTTCAGCAACAACTGG 59.933 43.478 0.00 0.00 45.11 4.00
199 200 2.722094 TCTGTTTCAGCAACAACTGGT 58.278 42.857 0.00 0.00 45.11 4.00
200 201 3.879998 TCTGTTTCAGCAACAACTGGTA 58.120 40.909 0.00 0.00 45.11 3.25
201 202 3.625764 TCTGTTTCAGCAACAACTGGTAC 59.374 43.478 0.00 0.00 45.11 3.34
202 203 3.348119 TGTTTCAGCAACAACTGGTACA 58.652 40.909 0.00 0.00 42.76 2.90
203 204 3.951037 TGTTTCAGCAACAACTGGTACAT 59.049 39.130 0.00 0.00 42.76 2.29
204 205 4.036262 TGTTTCAGCAACAACTGGTACATC 59.964 41.667 0.00 0.00 42.76 3.06
205 206 3.483808 TCAGCAACAACTGGTACATCA 57.516 42.857 0.00 0.00 38.20 3.07
206 207 3.814625 TCAGCAACAACTGGTACATCAA 58.185 40.909 0.00 0.00 38.20 2.57
207 208 4.203226 TCAGCAACAACTGGTACATCAAA 58.797 39.130 0.00 0.00 38.20 2.69
208 209 4.275689 TCAGCAACAACTGGTACATCAAAG 59.724 41.667 0.00 0.00 38.20 2.77
209 210 3.569701 AGCAACAACTGGTACATCAAAGG 59.430 43.478 0.00 0.00 38.20 3.11
210 211 3.305335 GCAACAACTGGTACATCAAAGGG 60.305 47.826 0.00 0.00 38.20 3.95
211 212 3.876309 ACAACTGGTACATCAAAGGGT 57.124 42.857 0.00 0.00 38.20 4.34
212 213 3.486383 ACAACTGGTACATCAAAGGGTG 58.514 45.455 0.00 0.00 38.20 4.61
213 214 3.117663 ACAACTGGTACATCAAAGGGTGT 60.118 43.478 0.00 0.00 38.20 4.16
214 215 3.876309 ACTGGTACATCAAAGGGTGTT 57.124 42.857 0.00 0.00 38.20 3.32
215 216 4.178956 ACTGGTACATCAAAGGGTGTTT 57.821 40.909 0.00 0.00 38.20 2.83
216 217 4.542697 ACTGGTACATCAAAGGGTGTTTT 58.457 39.130 0.00 0.00 38.20 2.43
217 218 4.959839 ACTGGTACATCAAAGGGTGTTTTT 59.040 37.500 0.00 0.00 38.20 1.94
218 219 6.130569 ACTGGTACATCAAAGGGTGTTTTTA 58.869 36.000 0.00 0.00 38.20 1.52
219 220 6.780522 ACTGGTACATCAAAGGGTGTTTTTAT 59.219 34.615 0.00 0.00 38.20 1.40
220 221 7.289084 ACTGGTACATCAAAGGGTGTTTTTATT 59.711 33.333 0.00 0.00 38.20 1.40
221 222 8.024145 TGGTACATCAAAGGGTGTTTTTATTT 57.976 30.769 0.00 0.00 0.00 1.40
222 223 9.144298 TGGTACATCAAAGGGTGTTTTTATTTA 57.856 29.630 0.00 0.00 0.00 1.40
226 227 9.500785 ACATCAAAGGGTGTTTTTATTTATTGG 57.499 29.630 0.00 0.00 0.00 3.16
227 228 9.717942 CATCAAAGGGTGTTTTTATTTATTGGA 57.282 29.630 0.00 0.00 0.00 3.53
968 990 2.378634 CCATCCTCCCGCTCCCTTT 61.379 63.158 0.00 0.00 0.00 3.11
1338 1360 0.600255 CGGACATATTCACGCTCCCC 60.600 60.000 0.00 0.00 0.00 4.81
1374 1396 1.524482 GAGGATCAGGCCACTGTCC 59.476 63.158 5.01 6.96 45.14 4.02
1476 1498 2.281484 TTCAACAGCAGGCCGGAC 60.281 61.111 5.05 0.00 0.00 4.79
1575 1597 0.034896 ACTTGCAGACCGTTCCGATT 59.965 50.000 0.00 0.00 0.00 3.34
1808 1835 7.661536 ATCTTAGTGAGATGCCAAGTAGTTA 57.338 36.000 0.00 0.00 43.52 2.24
1821 1848 6.872020 TGCCAAGTAGTTACAGAGTTATTGAC 59.128 38.462 0.00 0.00 0.00 3.18
1909 1940 4.621991 ACTAAGTGTGTGTAGAACAGCAG 58.378 43.478 0.00 0.00 40.26 4.24
1962 1993 9.048446 AGTAAGTTTACGAGCAAACAGAATTTA 57.952 29.630 12.22 2.75 40.22 1.40
1976 2007 9.399403 CAAACAGAATTTACCTTCTCTTTTAGC 57.601 33.333 0.00 0.00 33.18 3.09
2074 2122 4.702131 CCAAGCTAAGCTACTCACCATTTT 59.298 41.667 0.00 0.00 38.25 1.82
2248 2480 2.435069 TGTCCAGGTTTTCTGTTACCGA 59.565 45.455 0.00 0.00 41.83 4.69
2278 2510 1.883638 GCAGTGGAACAGATCAAGGCA 60.884 52.381 0.00 0.00 41.80 4.75
2544 2776 6.040209 TCCTCCATTGTCCATTTTGAAATG 57.960 37.500 9.03 9.03 44.12 2.32
2588 2831 7.189079 AGACCCCACTTCATTTGTTTTTAAA 57.811 32.000 0.00 0.00 0.00 1.52
2736 2980 6.017523 GCTAGGATCTCTTGCAACTTTTATCC 60.018 42.308 0.00 4.39 42.43 2.59
2798 3042 7.706179 GTGAAATGAGTTTTGATTTTCTCCACA 59.294 33.333 0.00 0.00 0.00 4.17
2821 3065 0.961019 CTTGGCTGGCTGCTTTGTAA 59.039 50.000 16.14 3.97 42.39 2.41
2889 3133 9.247861 ACAGCCTGATTTTATCTTCAACTAATT 57.752 29.630 0.00 0.00 0.00 1.40
2931 3177 5.364446 TGCCGTTTCTAGATGGGATAGTTTA 59.636 40.000 8.08 0.00 0.00 2.01
2935 3181 9.169592 CCGTTTCTAGATGGGATAGTTTAAAAA 57.830 33.333 0.00 0.00 0.00 1.94
3530 3859 9.621629 TGTAGATTTGTTCTTCTTAGGTTTTCA 57.378 29.630 0.00 0.00 35.79 2.69
3555 3884 7.658525 TCACATATGGAAAGGTGCATTTATT 57.341 32.000 7.80 0.00 37.04 1.40
3604 3933 4.104383 ACTGGAATCACTGTTGGACAAT 57.896 40.909 0.00 0.00 0.00 2.71
3752 4081 1.192146 TGGAACGGACTCCCAGGAAG 61.192 60.000 0.00 0.00 34.22 3.46
3756 4085 1.128188 ACGGACTCCCAGGAAGCTTT 61.128 55.000 0.00 0.00 0.00 3.51
4052 4381 8.169268 CGAACAATTCACTTTATCAGTACCTTC 58.831 37.037 0.00 0.00 32.76 3.46
4077 4406 1.542915 GCATGGCAGTTCAACACATCT 59.457 47.619 0.00 0.00 0.00 2.90
4078 4407 2.670229 GCATGGCAGTTCAACACATCTG 60.670 50.000 0.00 0.00 0.00 2.90
4081 4410 1.242076 GCAGTTCAACACATCTGCCT 58.758 50.000 4.90 0.00 44.84 4.75
4105 4434 5.356751 TGTTTTTACTTGTGAGCATGTCAGT 59.643 36.000 0.00 0.00 35.13 3.41
4223 4554 2.708051 ACAGCTGATTGTGTCCATGAG 58.292 47.619 23.35 0.00 0.00 2.90
4224 4555 1.400846 CAGCTGATTGTGTCCATGAGC 59.599 52.381 8.42 0.00 0.00 4.26
4387 4719 6.721208 AGGTATGATGTGTTCATGAAACCTTT 59.279 34.615 15.37 0.00 43.97 3.11
4431 4763 3.045634 TCCATAATGAACCCCGATGTCT 58.954 45.455 0.00 0.00 0.00 3.41
4432 4764 4.228010 TCCATAATGAACCCCGATGTCTA 58.772 43.478 0.00 0.00 0.00 2.59
4433 4765 4.844085 TCCATAATGAACCCCGATGTCTAT 59.156 41.667 0.00 0.00 0.00 1.98
4434 4766 4.937620 CCATAATGAACCCCGATGTCTATG 59.062 45.833 0.00 0.00 0.00 2.23
4435 4767 5.513094 CCATAATGAACCCCGATGTCTATGT 60.513 44.000 0.00 0.00 0.00 2.29
4436 4768 2.979814 TGAACCCCGATGTCTATGTG 57.020 50.000 0.00 0.00 0.00 3.21
4437 4769 2.462723 TGAACCCCGATGTCTATGTGA 58.537 47.619 0.00 0.00 0.00 3.58
4438 4770 2.835156 TGAACCCCGATGTCTATGTGAA 59.165 45.455 0.00 0.00 0.00 3.18
4439 4771 3.262151 TGAACCCCGATGTCTATGTGAAA 59.738 43.478 0.00 0.00 0.00 2.69
4440 4772 3.992943 ACCCCGATGTCTATGTGAAAA 57.007 42.857 0.00 0.00 0.00 2.29
4441 4773 4.295141 ACCCCGATGTCTATGTGAAAAA 57.705 40.909 0.00 0.00 0.00 1.94
4496 4828 5.291614 ACATTTTGTGCAGCTAGTTTGTTTG 59.708 36.000 0.00 0.00 0.00 2.93
4532 4864 8.873215 ATACGAACTTCAGTAATGGTCTAATG 57.127 34.615 0.00 0.00 0.00 1.90
4557 4889 8.540388 TGACAGCCTAACTAATTACTCATTCTT 58.460 33.333 0.00 0.00 0.00 2.52
4674 5006 5.067674 TCTGCAATAATGATTAAGTGCCACC 59.932 40.000 16.70 0.00 32.34 4.61
4681 5013 0.672401 ATTAAGTGCCACCGGTCGTG 60.672 55.000 2.59 0.00 42.62 4.35
4756 5088 7.598118 TGTTTGGTATGCATCTTACATTTGTTG 59.402 33.333 0.19 0.00 0.00 3.33
4778 5110 8.181573 TGTTGATTCTTAGACAAACAGTGTTTC 58.818 33.333 18.34 8.83 41.96 2.78
4782 5114 9.477484 GATTCTTAGACAAACAGTGTTTCTCTA 57.523 33.333 22.49 22.49 41.96 2.43
4788 5120 4.024893 ACAAACAGTGTTTCTCTATGCACG 60.025 41.667 18.34 6.12 37.01 5.34
4818 5150 9.005777 TCATCATATAATGTTGTCCATGTCATG 57.994 33.333 5.79 5.79 32.82 3.07
4821 5153 7.992033 TCATATAATGTTGTCCATGTCATGTCA 59.008 33.333 11.84 7.75 32.82 3.58
4842 5174 1.396648 TGCGCTATGACGTTCATTTGG 59.603 47.619 9.73 0.80 38.26 3.28
4845 5177 2.159585 CGCTATGACGTTCATTTGGCAA 60.160 45.455 0.00 0.00 38.26 4.52
4852 5184 3.971150 ACGTTCATTTGGCAAATTCGAA 58.029 36.364 30.10 24.34 0.00 3.71
4874 5206 7.012515 TCGAAACTCAGATCCTTCTACTATCAC 59.987 40.741 0.00 0.00 0.00 3.06
4889 5221 8.515695 TCTACTATCACGAAAATCTAACTGGA 57.484 34.615 0.00 0.00 0.00 3.86
5022 5354 1.651737 TGGAGTCCAATTCCGGAGAA 58.348 50.000 10.20 0.00 37.54 2.87
5079 5411 7.977853 CAGTTCATTTATTCATTGAGGGAAAGG 59.022 37.037 0.00 0.00 0.00 3.11
5173 5505 1.260544 ATGGCTGGAAAAGGTCTTGC 58.739 50.000 0.00 0.00 0.00 4.01
5180 5512 2.955660 TGGAAAAGGTCTTGCGACAAAT 59.044 40.909 0.00 0.00 42.05 2.32
5192 5524 2.287308 TGCGACAAATTTTCACCTTCCG 60.287 45.455 0.00 0.00 0.00 4.30
5193 5525 2.287368 GCGACAAATTTTCACCTTCCGT 60.287 45.455 0.00 0.00 0.00 4.69
5232 5566 6.951062 TCATCACTTTATTTGTCCACAACA 57.049 33.333 0.00 0.00 35.28 3.33
5275 5609 7.039270 ACTAAGGCATTCGTTTTTCTTTTGTT 58.961 30.769 0.00 0.00 0.00 2.83
5326 5660 7.497249 GCCAAGAGAACATTGTACTTCAGATAT 59.503 37.037 0.00 0.00 0.00 1.63
5356 5690 7.712639 CACTGTAAGATGTTATCCTGCACTTAT 59.287 37.037 0.00 0.00 37.43 1.73
5375 5724 7.521585 GCACTTATTATTATTGGTTTCCCTCCG 60.522 40.741 0.00 0.00 0.00 4.63
5391 5740 4.345837 TCCCTCCGATCCGTATTAATTGTT 59.654 41.667 0.00 0.00 0.00 2.83
5443 5887 5.215252 AGTGACAGTTAATATGGATCGGG 57.785 43.478 0.00 0.00 0.00 5.14
5739 6191 7.148086 TGGTTAATGTTATGTCCATCTTGCTTC 60.148 37.037 0.00 0.00 0.00 3.86
5752 6204 1.462670 CTTGCTTCGAACTCAGGCTTC 59.537 52.381 7.70 0.00 0.00 3.86
5778 6230 5.636121 GGATTTGTATTTGGACCCGAAAAAC 59.364 40.000 0.00 0.00 0.00 2.43
5854 6306 7.013369 GGAAATCTTTGGATCCCATACAAGTAC 59.987 40.741 9.90 0.00 33.93 2.73
5890 6343 4.445452 TCTTATATTACCGTGGCGATCC 57.555 45.455 0.00 0.00 0.00 3.36
6001 6454 5.365025 TCTCCAGCTAGCTTCAGATACAATT 59.635 40.000 16.46 0.00 0.00 2.32
6088 6543 4.090642 GCTTGACTCTATGTTGAACTCACG 59.909 45.833 0.00 0.00 0.00 4.35
6200 6657 1.460743 ACGTTGATGCACGATTGACAG 59.539 47.619 1.06 0.00 43.15 3.51
6232 6689 1.211969 GTCAAGGCATGTGCAGCTG 59.788 57.895 10.11 10.11 44.36 4.24
6238 6695 3.031964 GCATGTGCAGCTGACCGAC 62.032 63.158 20.43 8.24 41.59 4.79
6397 6857 7.117092 GGAAGTTTCACTAGATCTGACTTGTTC 59.883 40.741 5.18 0.00 0.00 3.18
6513 6973 3.605231 GCTCGTCAGTAGATAGCGAAGAC 60.605 52.174 0.00 0.00 0.00 3.01
6517 6977 4.034163 CGTCAGTAGATAGCGAAGACTGAA 59.966 45.833 11.40 0.00 45.88 3.02
6569 7030 3.735237 TGAACAACTGAGAGAGGTCAC 57.265 47.619 0.00 0.00 0.00 3.67
6571 7032 0.315568 ACAACTGAGAGAGGTCACGC 59.684 55.000 0.00 0.00 0.00 5.34
6572 7033 0.315251 CAACTGAGAGAGGTCACGCA 59.685 55.000 0.00 0.00 0.00 5.24
6577 7038 0.029567 GAGAGAGGTCACGCATACCG 59.970 60.000 0.00 0.00 42.15 4.02
6578 7039 1.065928 GAGAGGTCACGCATACCGG 59.934 63.158 0.00 0.00 42.15 5.28
6581 7042 4.460683 GGTCACGCATACCGGCCA 62.461 66.667 0.00 0.00 42.52 5.36
6607 7068 3.683847 GCTTCAAGGTACATGATCCTGCT 60.684 47.826 12.51 0.00 35.43 4.24
6608 7069 4.443457 GCTTCAAGGTACATGATCCTGCTA 60.443 45.833 12.51 1.89 35.43 3.49
6627 7088 5.116180 TGCTATACAGTTCCTTCGAAATGG 58.884 41.667 0.00 0.00 46.01 3.16
6628 7089 4.024809 GCTATACAGTTCCTTCGAAATGGC 60.025 45.833 0.00 0.00 46.01 4.40
6638 7099 2.622546 TCGAAATGGCCTAAAAACGC 57.377 45.000 3.32 0.00 0.00 4.84
6665 7127 1.221840 ATCGGCTGCTTTCGATGGT 59.778 52.632 10.68 0.00 43.37 3.55
6751 7213 1.383523 GCTTGCACACTCTTATCCCC 58.616 55.000 0.00 0.00 0.00 4.81
6802 7265 5.567037 TCTTTTTCTCCCAGATCACTTGA 57.433 39.130 0.00 0.00 0.00 3.02
6840 7303 3.932822 TGCAGGAATAGTTTGTTAGCGA 58.067 40.909 0.00 0.00 0.00 4.93
6845 7308 6.258068 GCAGGAATAGTTTGTTAGCGATAACT 59.742 38.462 22.73 8.34 35.25 2.24
6883 7346 8.045507 TGATTGTAATTTCTGAGCTGAGAGATT 58.954 33.333 19.98 19.98 32.89 2.40
6908 7372 2.060326 GACGACATCGACAGTGGAAA 57.940 50.000 8.54 0.00 43.02 3.13
6909 7373 2.607187 GACGACATCGACAGTGGAAAT 58.393 47.619 8.54 0.00 43.02 2.17
6911 7375 3.399330 ACGACATCGACAGTGGAAATTT 58.601 40.909 8.54 0.00 43.02 1.82
6914 7378 4.625742 CGACATCGACAGTGGAAATTTACT 59.374 41.667 1.27 0.00 43.02 2.24
6915 7379 7.767280 ACGACATCGACAGTGGAAATTTACTG 61.767 42.308 16.24 16.24 44.60 2.74
6916 7380 4.695455 ACATCGACAGTGGAAATTTACTGG 59.305 41.667 20.12 7.98 46.52 4.00
6917 7381 4.345859 TCGACAGTGGAAATTTACTGGT 57.654 40.909 20.12 8.45 46.52 4.00
6982 7464 1.330521 CCATTAACAACAGCCGGATCG 59.669 52.381 5.05 0.00 0.00 3.69
6983 7465 1.014352 ATTAACAACAGCCGGATCGC 58.986 50.000 5.05 0.00 0.00 4.58
6992 7474 2.505337 CCGGATCGCGTCGAAACA 60.505 61.111 5.77 0.00 39.99 2.83
7000 7482 0.088530 CGCGTCGAAACACGTAAGAC 59.911 55.000 0.00 0.00 42.04 3.01
7006 7488 3.483558 GTCGAAACACGTAAGACGAAACT 59.516 43.478 5.94 0.00 46.05 2.66
7017 7499 8.857216 CACGTAAGACGAAACTTATCTAAACAT 58.143 33.333 5.94 0.00 46.05 2.71
7073 7555 0.179076 TGCTGCCTGTCCATACATCG 60.179 55.000 0.00 0.00 34.37 3.84
7106 7589 5.566627 GCCATTGCATCATCATCATCATGAA 60.567 40.000 0.00 0.00 38.89 2.57
7197 7680 1.215244 GTCCTAATTTCTACCCGCGC 58.785 55.000 0.00 0.00 0.00 6.86
7211 7694 1.131826 CGCGCTGTCGGTAAAAAGG 59.868 57.895 5.56 0.00 35.95 3.11
7350 7833 0.035458 GCTCAGTGTTAGTGCACCCT 59.965 55.000 14.63 0.00 40.04 4.34
7369 7852 4.145052 CCCTCTCCAAACTAGCACTTTTT 58.855 43.478 0.00 0.00 0.00 1.94
7424 7922 1.759445 GCCTCACTCATCAAGCCTAGA 59.241 52.381 0.00 0.00 0.00 2.43
7444 7942 0.465460 GACACCCACACACCACACAT 60.465 55.000 0.00 0.00 0.00 3.21
7484 7982 1.694150 TGATAGAAGAAGATGGCCGGG 59.306 52.381 2.18 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.211164 GCATGTTTGGCTGGTTTTTAAGAC 59.789 41.667 0.00 0.00 0.00 3.01
1 2 4.100808 AGCATGTTTGGCTGGTTTTTAAGA 59.899 37.500 0.00 0.00 40.80 2.10
2 3 4.379652 AGCATGTTTGGCTGGTTTTTAAG 58.620 39.130 0.00 0.00 40.80 1.85
3 4 4.414337 AGCATGTTTGGCTGGTTTTTAA 57.586 36.364 0.00 0.00 40.80 1.52
4 5 5.537300 TTAGCATGTTTGGCTGGTTTTTA 57.463 34.783 0.00 0.00 42.62 1.52
5 6 4.414337 TTAGCATGTTTGGCTGGTTTTT 57.586 36.364 0.00 0.00 42.62 1.94
6 7 4.100808 TCTTTAGCATGTTTGGCTGGTTTT 59.899 37.500 0.00 0.00 42.62 2.43
7 8 3.640967 TCTTTAGCATGTTTGGCTGGTTT 59.359 39.130 0.00 0.00 42.62 3.27
8 9 3.230134 TCTTTAGCATGTTTGGCTGGTT 58.770 40.909 0.00 0.00 42.62 3.67
9 10 2.875296 TCTTTAGCATGTTTGGCTGGT 58.125 42.857 0.00 0.00 42.62 4.00
10 11 3.940209 TTCTTTAGCATGTTTGGCTGG 57.060 42.857 0.00 0.00 42.62 4.85
11 12 7.464977 GCATATTTTCTTTAGCATGTTTGGCTG 60.465 37.037 0.00 0.00 42.62 4.85
12 13 6.536224 GCATATTTTCTTTAGCATGTTTGGCT 59.464 34.615 0.00 0.00 45.18 4.75
13 14 6.313411 TGCATATTTTCTTTAGCATGTTTGGC 59.687 34.615 0.00 0.00 0.00 4.52
14 15 7.830940 TGCATATTTTCTTTAGCATGTTTGG 57.169 32.000 0.00 0.00 0.00 3.28
15 16 8.545420 GGATGCATATTTTCTTTAGCATGTTTG 58.455 33.333 0.00 0.00 42.18 2.93
16 17 7.712205 GGGATGCATATTTTCTTTAGCATGTTT 59.288 33.333 0.00 0.00 42.18 2.83
17 18 7.147689 TGGGATGCATATTTTCTTTAGCATGTT 60.148 33.333 0.00 0.00 42.18 2.71
18 19 6.324512 TGGGATGCATATTTTCTTTAGCATGT 59.675 34.615 0.00 0.00 42.18 3.21
19 20 6.751157 TGGGATGCATATTTTCTTTAGCATG 58.249 36.000 0.00 0.00 42.18 4.06
20 21 6.982160 TGGGATGCATATTTTCTTTAGCAT 57.018 33.333 0.00 0.00 44.50 3.79
21 22 6.154192 TGTTGGGATGCATATTTTCTTTAGCA 59.846 34.615 0.00 0.00 36.34 3.49
22 23 6.572519 TGTTGGGATGCATATTTTCTTTAGC 58.427 36.000 0.00 0.00 0.00 3.09
23 24 7.707893 CCTTGTTGGGATGCATATTTTCTTTAG 59.292 37.037 0.00 0.00 0.00 1.85
24 25 7.180051 ACCTTGTTGGGATGCATATTTTCTTTA 59.820 33.333 0.00 0.00 41.11 1.85
25 26 6.013466 ACCTTGTTGGGATGCATATTTTCTTT 60.013 34.615 0.00 0.00 41.11 2.52
26 27 5.484998 ACCTTGTTGGGATGCATATTTTCTT 59.515 36.000 0.00 0.00 41.11 2.52
27 28 5.025453 ACCTTGTTGGGATGCATATTTTCT 58.975 37.500 0.00 0.00 41.11 2.52
28 29 5.343307 ACCTTGTTGGGATGCATATTTTC 57.657 39.130 0.00 0.00 41.11 2.29
29 30 6.630188 GCTTACCTTGTTGGGATGCATATTTT 60.630 38.462 0.00 0.00 46.10 1.82
30 31 5.163416 GCTTACCTTGTTGGGATGCATATTT 60.163 40.000 0.00 0.00 46.10 1.40
31 32 4.342092 GCTTACCTTGTTGGGATGCATATT 59.658 41.667 0.00 0.00 46.10 1.28
32 33 3.891366 GCTTACCTTGTTGGGATGCATAT 59.109 43.478 0.00 0.00 46.10 1.78
33 34 3.287222 GCTTACCTTGTTGGGATGCATA 58.713 45.455 0.00 0.00 46.10 3.14
34 35 2.102578 GCTTACCTTGTTGGGATGCAT 58.897 47.619 0.00 0.00 46.10 3.96
35 36 1.544724 GCTTACCTTGTTGGGATGCA 58.455 50.000 0.00 0.00 46.10 3.96
36 37 1.544724 TGCTTACCTTGTTGGGATGC 58.455 50.000 0.00 0.00 46.78 3.91
37 38 3.091545 ACATGCTTACCTTGTTGGGATG 58.908 45.455 0.00 0.00 41.11 3.51
38 39 3.245229 TGACATGCTTACCTTGTTGGGAT 60.245 43.478 0.00 0.00 41.11 3.85
39 40 2.107378 TGACATGCTTACCTTGTTGGGA 59.893 45.455 0.00 0.00 41.11 4.37
40 41 2.513753 TGACATGCTTACCTTGTTGGG 58.486 47.619 0.00 0.00 41.11 4.12
41 42 3.119388 CCATGACATGCTTACCTTGTTGG 60.119 47.826 10.10 0.00 42.93 3.77
42 43 3.674138 GCCATGACATGCTTACCTTGTTG 60.674 47.826 10.10 0.00 32.53 3.33
43 44 2.493278 GCCATGACATGCTTACCTTGTT 59.507 45.455 10.10 0.00 32.53 2.83
44 45 2.094675 GCCATGACATGCTTACCTTGT 58.905 47.619 10.10 0.00 34.81 3.16
45 46 1.406539 GGCCATGACATGCTTACCTTG 59.593 52.381 10.10 0.00 0.00 3.61
46 47 1.767759 GGCCATGACATGCTTACCTT 58.232 50.000 10.10 0.00 0.00 3.50
47 48 0.464373 CGGCCATGACATGCTTACCT 60.464 55.000 10.10 0.00 0.00 3.08
48 49 0.463654 TCGGCCATGACATGCTTACC 60.464 55.000 10.10 7.31 0.00 2.85
49 50 0.657840 GTCGGCCATGACATGCTTAC 59.342 55.000 10.10 1.91 38.75 2.34
50 51 0.463654 GGTCGGCCATGACATGCTTA 60.464 55.000 10.10 0.00 40.72 3.09
51 52 1.750399 GGTCGGCCATGACATGCTT 60.750 57.895 10.10 0.00 40.72 3.91
52 53 2.124570 GGTCGGCCATGACATGCT 60.125 61.111 10.10 0.00 40.72 3.79
53 54 3.211963 GGGTCGGCCATGACATGC 61.212 66.667 9.07 5.70 40.72 4.06
54 55 2.896854 CGGGTCGGCCATGACATG 60.897 66.667 9.07 8.56 40.72 3.21
55 56 2.478335 AAACGGGTCGGCCATGACAT 62.478 55.000 9.07 0.00 40.72 3.06
56 57 1.828461 TAAACGGGTCGGCCATGACA 61.828 55.000 9.07 0.00 40.72 3.58
57 58 1.078988 TAAACGGGTCGGCCATGAC 60.079 57.895 9.07 2.30 38.17 3.06
58 59 1.078988 GTAAACGGGTCGGCCATGA 60.079 57.895 9.07 0.00 36.17 3.07
59 60 0.176219 TAGTAAACGGGTCGGCCATG 59.824 55.000 9.07 1.15 36.17 3.66
60 61 0.903942 TTAGTAAACGGGTCGGCCAT 59.096 50.000 9.07 0.00 36.17 4.40
61 62 0.037419 GTTAGTAAACGGGTCGGCCA 60.037 55.000 9.07 0.00 36.17 5.36
62 63 0.247460 AGTTAGTAAACGGGTCGGCC 59.753 55.000 0.00 0.00 40.73 6.13
63 64 2.480244 CCTAGTTAGTAAACGGGTCGGC 60.480 54.545 0.00 0.00 40.73 5.54
64 65 2.755103 ACCTAGTTAGTAAACGGGTCGG 59.245 50.000 0.00 0.00 40.19 4.79
65 66 4.021191 GACCTAGTTAGTAAACGGGTCG 57.979 50.000 15.19 0.00 44.76 4.79
67 68 3.191371 CACGACCTAGTTAGTAAACGGGT 59.809 47.826 0.00 8.07 43.85 5.28
68 69 3.762779 CACGACCTAGTTAGTAAACGGG 58.237 50.000 0.00 0.00 40.73 5.28
69 70 3.174375 GCACGACCTAGTTAGTAAACGG 58.826 50.000 0.00 0.00 40.73 4.44
70 71 3.174375 GGCACGACCTAGTTAGTAAACG 58.826 50.000 0.00 0.00 36.66 3.60
83 84 4.162690 CCCAGCCTAGGCACGACC 62.163 72.222 34.70 5.03 44.88 4.79
84 85 3.075005 TCCCAGCCTAGGCACGAC 61.075 66.667 34.70 5.83 44.88 4.34
85 86 2.219449 TACTCCCAGCCTAGGCACGA 62.219 60.000 34.70 23.46 44.88 4.35
86 87 1.756950 TACTCCCAGCCTAGGCACG 60.757 63.158 34.70 24.15 44.88 5.34
87 88 0.976073 TGTACTCCCAGCCTAGGCAC 60.976 60.000 34.70 21.83 44.88 5.01
88 89 0.687757 CTGTACTCCCAGCCTAGGCA 60.688 60.000 34.70 13.97 44.88 4.75
89 90 2.128729 CTGTACTCCCAGCCTAGGC 58.871 63.158 27.19 27.19 42.33 3.93
96 97 1.079819 CCGTGTGCTGTACTCCCAG 60.080 63.158 0.00 0.00 35.49 4.45
97 98 2.579657 CCCGTGTGCTGTACTCCCA 61.580 63.158 0.00 0.00 0.00 4.37
98 99 2.264794 CCCGTGTGCTGTACTCCC 59.735 66.667 0.00 0.00 0.00 4.30
99 100 2.434359 GCCCGTGTGCTGTACTCC 60.434 66.667 0.00 0.00 0.00 3.85
100 101 2.434359 GGCCCGTGTGCTGTACTC 60.434 66.667 0.00 0.00 0.00 2.59
101 102 4.373116 CGGCCCGTGTGCTGTACT 62.373 66.667 0.00 0.00 32.81 2.73
102 103 4.367023 TCGGCCCGTGTGCTGTAC 62.367 66.667 1.63 0.00 38.77 2.90
103 104 4.367023 GTCGGCCCGTGTGCTGTA 62.367 66.667 1.63 0.00 38.77 2.74
120 121 2.552585 ATTAGACGGGCCGTGTCGTG 62.553 60.000 39.41 2.89 41.37 4.35
121 122 1.031571 TATTAGACGGGCCGTGTCGT 61.032 55.000 39.41 25.27 41.37 4.34
122 123 0.593263 GTATTAGACGGGCCGTGTCG 60.593 60.000 39.41 7.57 41.37 4.35
123 124 0.743097 AGTATTAGACGGGCCGTGTC 59.257 55.000 39.41 23.52 41.37 3.67
124 125 0.743097 GAGTATTAGACGGGCCGTGT 59.257 55.000 39.41 35.25 41.37 4.49
125 126 0.742505 TGAGTATTAGACGGGCCGTG 59.257 55.000 39.41 6.59 41.37 4.94
126 127 1.700955 ATGAGTATTAGACGGGCCGT 58.299 50.000 34.81 34.81 45.10 5.68
127 128 2.035449 TGAATGAGTATTAGACGGGCCG 59.965 50.000 27.06 27.06 0.00 6.13
128 129 3.654414 CTGAATGAGTATTAGACGGGCC 58.346 50.000 0.00 0.00 0.00 5.80
129 130 3.060602 GCTGAATGAGTATTAGACGGGC 58.939 50.000 0.00 0.00 0.00 6.13
130 131 3.004419 TCGCTGAATGAGTATTAGACGGG 59.996 47.826 0.00 0.00 0.00 5.28
131 132 3.975670 GTCGCTGAATGAGTATTAGACGG 59.024 47.826 0.00 0.00 0.00 4.79
132 133 4.598062 TGTCGCTGAATGAGTATTAGACG 58.402 43.478 0.00 0.00 0.00 4.18
133 134 5.805486 TGTTGTCGCTGAATGAGTATTAGAC 59.195 40.000 0.00 0.00 0.00 2.59
134 135 5.961272 TGTTGTCGCTGAATGAGTATTAGA 58.039 37.500 0.00 0.00 0.00 2.10
135 136 6.647212 TTGTTGTCGCTGAATGAGTATTAG 57.353 37.500 0.00 0.00 0.00 1.73
136 137 7.609760 ATTTGTTGTCGCTGAATGAGTATTA 57.390 32.000 0.00 0.00 0.00 0.98
137 138 5.940192 TTTGTTGTCGCTGAATGAGTATT 57.060 34.783 0.00 0.00 0.00 1.89
138 139 7.254898 CCATATTTGTTGTCGCTGAATGAGTAT 60.255 37.037 0.00 0.00 0.00 2.12
139 140 6.037062 CCATATTTGTTGTCGCTGAATGAGTA 59.963 38.462 0.00 0.00 0.00 2.59
140 141 5.163723 CCATATTTGTTGTCGCTGAATGAGT 60.164 40.000 0.00 0.00 0.00 3.41
141 142 5.065090 TCCATATTTGTTGTCGCTGAATGAG 59.935 40.000 0.00 0.00 0.00 2.90
142 143 4.940654 TCCATATTTGTTGTCGCTGAATGA 59.059 37.500 0.00 0.00 0.00 2.57
143 144 5.030295 GTCCATATTTGTTGTCGCTGAATG 58.970 41.667 0.00 0.00 0.00 2.67
144 145 4.943705 AGTCCATATTTGTTGTCGCTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
145 146 4.154015 CAGTCCATATTTGTTGTCGCTGAA 59.846 41.667 0.00 0.00 0.00 3.02
146 147 3.684305 CAGTCCATATTTGTTGTCGCTGA 59.316 43.478 0.00 0.00 0.00 4.26
147 148 3.436704 ACAGTCCATATTTGTTGTCGCTG 59.563 43.478 0.00 0.00 0.00 5.18
148 149 3.674997 ACAGTCCATATTTGTTGTCGCT 58.325 40.909 0.00 0.00 0.00 4.93
149 150 3.684788 AGACAGTCCATATTTGTTGTCGC 59.315 43.478 0.00 0.00 39.76 5.19
150 151 6.330278 TCTAGACAGTCCATATTTGTTGTCG 58.670 40.000 0.00 0.00 39.76 4.35
151 152 9.250624 GTATCTAGACAGTCCATATTTGTTGTC 57.749 37.037 0.00 0.00 36.17 3.18
152 153 8.758829 TGTATCTAGACAGTCCATATTTGTTGT 58.241 33.333 0.00 0.00 0.00 3.32
153 154 9.770097 ATGTATCTAGACAGTCCATATTTGTTG 57.230 33.333 0.00 0.00 31.51 3.33
154 155 9.988815 GATGTATCTAGACAGTCCATATTTGTT 57.011 33.333 0.00 0.00 31.51 2.83
155 156 9.373450 AGATGTATCTAGACAGTCCATATTTGT 57.627 33.333 0.00 0.00 34.85 2.83
156 157 9.636879 CAGATGTATCTAGACAGTCCATATTTG 57.363 37.037 0.00 0.00 34.85 2.32
157 158 9.373450 ACAGATGTATCTAGACAGTCCATATTT 57.627 33.333 0.00 0.00 34.85 1.40
158 159 8.948401 ACAGATGTATCTAGACAGTCCATATT 57.052 34.615 0.00 0.00 34.85 1.28
159 160 8.948401 AACAGATGTATCTAGACAGTCCATAT 57.052 34.615 0.00 0.00 34.85 1.78
160 161 8.768501 AAACAGATGTATCTAGACAGTCCATA 57.231 34.615 0.00 0.00 34.85 2.74
161 162 7.343057 TGAAACAGATGTATCTAGACAGTCCAT 59.657 37.037 0.00 0.00 34.85 3.41
162 163 6.663523 TGAAACAGATGTATCTAGACAGTCCA 59.336 38.462 0.00 0.00 34.85 4.02
163 164 7.101652 TGAAACAGATGTATCTAGACAGTCC 57.898 40.000 0.00 0.00 34.85 3.85
164 165 6.695278 GCTGAAACAGATGTATCTAGACAGTC 59.305 42.308 0.00 0.00 34.85 3.51
165 166 6.153510 TGCTGAAACAGATGTATCTAGACAGT 59.846 38.462 0.00 0.00 34.85 3.55
166 167 6.567959 TGCTGAAACAGATGTATCTAGACAG 58.432 40.000 0.00 0.00 34.85 3.51
167 168 6.530019 TGCTGAAACAGATGTATCTAGACA 57.470 37.500 0.00 0.00 34.85 3.41
168 169 6.813649 TGTTGCTGAAACAGATGTATCTAGAC 59.186 38.462 0.00 0.00 43.96 2.59
169 170 6.935167 TGTTGCTGAAACAGATGTATCTAGA 58.065 36.000 0.00 0.00 43.96 2.43
182 183 4.036262 TGATGTACCAGTTGTTGCTGAAAC 59.964 41.667 0.00 0.00 38.70 2.78
183 184 4.203226 TGATGTACCAGTTGTTGCTGAAA 58.797 39.130 0.00 0.00 38.70 2.69
184 185 3.814625 TGATGTACCAGTTGTTGCTGAA 58.185 40.909 0.00 0.00 38.70 3.02
185 186 3.483808 TGATGTACCAGTTGTTGCTGA 57.516 42.857 0.00 0.00 38.70 4.26
186 187 4.539870 CTTTGATGTACCAGTTGTTGCTG 58.460 43.478 0.00 0.00 36.31 4.41
187 188 3.569701 CCTTTGATGTACCAGTTGTTGCT 59.430 43.478 0.00 0.00 0.00 3.91
188 189 3.305335 CCCTTTGATGTACCAGTTGTTGC 60.305 47.826 0.00 0.00 0.00 4.17
189 190 3.888930 ACCCTTTGATGTACCAGTTGTTG 59.111 43.478 0.00 0.00 0.00 3.33
190 191 3.888930 CACCCTTTGATGTACCAGTTGTT 59.111 43.478 0.00 0.00 0.00 2.83
191 192 3.117663 ACACCCTTTGATGTACCAGTTGT 60.118 43.478 0.00 0.00 0.00 3.32
192 193 3.486383 ACACCCTTTGATGTACCAGTTG 58.514 45.455 0.00 0.00 0.00 3.16
193 194 3.876309 ACACCCTTTGATGTACCAGTT 57.124 42.857 0.00 0.00 0.00 3.16
194 195 3.876309 AACACCCTTTGATGTACCAGT 57.124 42.857 0.00 0.00 0.00 4.00
195 196 5.529581 AAAAACACCCTTTGATGTACCAG 57.470 39.130 0.00 0.00 0.00 4.00
196 197 7.604657 AATAAAAACACCCTTTGATGTACCA 57.395 32.000 0.00 0.00 0.00 3.25
200 201 9.500785 CCAATAAATAAAAACACCCTTTGATGT 57.499 29.630 0.00 0.00 0.00 3.06
201 202 9.717942 TCCAATAAATAAAAACACCCTTTGATG 57.282 29.630 0.00 0.00 0.00 3.07
257 258 9.526286 GCTTTCGAGTACAACTTCTTTATTTAC 57.474 33.333 0.00 0.00 0.00 2.01
258 259 9.263538 TGCTTTCGAGTACAACTTCTTTATTTA 57.736 29.630 0.00 0.00 0.00 1.40
259 260 8.149973 TGCTTTCGAGTACAACTTCTTTATTT 57.850 30.769 0.00 0.00 0.00 1.40
260 261 7.724305 TGCTTTCGAGTACAACTTCTTTATT 57.276 32.000 0.00 0.00 0.00 1.40
261 262 7.907214 ATGCTTTCGAGTACAACTTCTTTAT 57.093 32.000 0.00 0.00 0.00 1.40
262 263 7.347508 GATGCTTTCGAGTACAACTTCTTTA 57.652 36.000 0.00 0.00 0.00 1.85
263 264 6.229561 GATGCTTTCGAGTACAACTTCTTT 57.770 37.500 0.00 0.00 0.00 2.52
264 265 5.847670 GATGCTTTCGAGTACAACTTCTT 57.152 39.130 0.00 0.00 0.00 2.52
835 857 3.228017 GCCGAGGTAGAGGAGGCC 61.228 72.222 0.00 0.00 41.81 5.19
873 895 2.185608 GTCGCCAGGGAGAAGAGC 59.814 66.667 0.00 0.00 0.00 4.09
1476 1498 1.078759 GGAACACCTCGACGATGCAG 61.079 60.000 0.00 0.00 0.00 4.41
1709 1734 8.952278 AGAAGGCAACATCGTGTATTTATAAAA 58.048 29.630 1.21 0.00 39.88 1.52
1808 1835 4.019860 AGCATGTCCAGTCAATAACTCTGT 60.020 41.667 0.00 0.00 35.45 3.41
1821 1848 1.602311 GCCCATCTAAGCATGTCCAG 58.398 55.000 0.00 0.00 0.00 3.86
1909 1940 5.469084 AGGCTACAAAACTAGTGTAAGTTGC 59.531 40.000 13.12 13.12 39.62 4.17
1962 1993 5.591877 CCTGCATATTGCTAAAAGAGAAGGT 59.408 40.000 0.75 0.00 45.31 3.50
1976 2007 0.178998 AGGGAGCTGCCTGCATATTG 60.179 55.000 27.99 0.00 45.94 1.90
2030 2061 3.304257 GGCATGTCTCAAACAACTGTGAG 60.304 47.826 0.00 0.00 42.37 3.51
2032 2063 2.358582 TGGCATGTCTCAAACAACTGTG 59.641 45.455 0.00 0.00 42.37 3.66
2035 2066 2.035066 GCTTGGCATGTCTCAAACAACT 59.965 45.455 0.00 0.00 42.37 3.16
2036 2067 2.035066 AGCTTGGCATGTCTCAAACAAC 59.965 45.455 0.00 0.00 42.37 3.32
2037 2068 2.309613 AGCTTGGCATGTCTCAAACAA 58.690 42.857 0.00 0.00 42.37 2.83
2101 2333 1.151668 CCTGCTCCACTTTTCTGTCG 58.848 55.000 0.00 0.00 0.00 4.35
2248 2480 4.973168 TCTGTTCCACTGCAGATACTTTT 58.027 39.130 23.35 0.00 36.89 2.27
2544 2776 5.698545 GGTCTTGCAGATACTCCATACAATC 59.301 44.000 0.00 0.00 0.00 2.67
2664 2908 3.179443 TGGAACACTGAAGACACTGTC 57.821 47.619 0.38 0.38 0.00 3.51
2841 3085 3.268334 TGGAACCCTGTAGGCATTAACAT 59.732 43.478 0.00 0.00 40.58 2.71
2895 3139 2.028385 AGAAACGGCAAGTTATCCTCGT 60.028 45.455 0.00 0.00 43.37 4.18
2896 3140 2.618053 AGAAACGGCAAGTTATCCTCG 58.382 47.619 0.00 0.00 43.37 4.63
2897 3141 5.007385 TCTAGAAACGGCAAGTTATCCTC 57.993 43.478 0.00 0.00 43.37 3.71
2898 3142 5.360591 CATCTAGAAACGGCAAGTTATCCT 58.639 41.667 0.00 0.00 43.37 3.24
2899 3143 4.511826 CCATCTAGAAACGGCAAGTTATCC 59.488 45.833 0.00 0.00 43.37 2.59
2901 3145 4.163458 TCCCATCTAGAAACGGCAAGTTAT 59.837 41.667 0.00 0.00 43.37 1.89
2902 3146 3.516300 TCCCATCTAGAAACGGCAAGTTA 59.484 43.478 0.00 0.00 43.37 2.24
2903 3147 2.304761 TCCCATCTAGAAACGGCAAGTT 59.695 45.455 0.00 0.00 46.76 2.66
2949 3195 4.616953 ACGTTTTCTTGGCACCTAAATTG 58.383 39.130 0.00 0.00 0.00 2.32
3467 3796 8.964476 TCCATCTTCAAATCCAGACTAAATAC 57.036 34.615 0.00 0.00 0.00 1.89
3530 3859 7.844493 ATAAATGCACCTTTCCATATGTGAT 57.156 32.000 1.24 0.00 0.00 3.06
3555 3884 4.221703 CCTGCACCACCCATAATTTTTACA 59.778 41.667 0.00 0.00 0.00 2.41
3604 3933 1.215382 CGTCCGCAGATGTCCAGAA 59.785 57.895 0.00 0.00 0.00 3.02
4027 4356 8.999431 TGAAGGTACTGATAAAGTGAATTGTTC 58.001 33.333 0.00 0.00 40.86 3.18
4043 4372 1.742761 CCATGCCAGTGAAGGTACTG 58.257 55.000 0.00 0.00 45.93 2.74
4052 4381 0.038892 GTTGAACTGCCATGCCAGTG 60.039 55.000 10.54 0.00 44.86 3.66
4077 4406 3.020274 TGCTCACAAGTAAAAACAGGCA 58.980 40.909 0.00 0.00 0.00 4.75
4078 4407 3.708563 TGCTCACAAGTAAAAACAGGC 57.291 42.857 0.00 0.00 0.00 4.85
4081 4410 5.356751 ACTGACATGCTCACAAGTAAAAACA 59.643 36.000 0.00 0.00 0.00 2.83
4105 4434 3.207265 ACACTTGTACTGAACCATGCA 57.793 42.857 0.00 0.00 0.00 3.96
4223 4554 7.063544 CAGTCCTAACTAGTTAAACATGACAGC 59.936 40.741 21.20 5.39 33.25 4.40
4224 4555 8.088981 ACAGTCCTAACTAGTTAAACATGACAG 58.911 37.037 21.20 17.09 33.25 3.51
4387 4719 8.215050 TGGAATCTTGAGAGGTTTAAGTTGTTA 58.785 33.333 0.00 0.00 0.00 2.41
4433 4765 9.979578 AGCTTTTATGTTCACATATTTTTCACA 57.020 25.926 0.45 0.00 38.49 3.58
4435 4767 9.979578 ACAGCTTTTATGTTCACATATTTTTCA 57.020 25.926 0.45 0.00 38.49 2.69
4496 4828 7.864307 ACTGAAGTTCGTATAAGTGTGTAAC 57.136 36.000 0.00 0.00 37.35 2.50
4532 4864 8.821894 CAAGAATGAGTAATTAGTTAGGCTGTC 58.178 37.037 0.00 0.00 0.00 3.51
4674 5006 7.143340 TGATAGAGGATTTAAATACACGACCG 58.857 38.462 12.97 0.00 0.00 4.79
4756 5088 8.371770 AGAGAAACACTGTTTGTCTAAGAATC 57.628 34.615 25.39 4.22 37.51 2.52
4778 5110 7.873739 TTATATGATGAACACGTGCATAGAG 57.126 36.000 17.22 0.00 0.00 2.43
4782 5114 6.866010 ACATTATATGATGAACACGTGCAT 57.134 33.333 17.22 12.08 0.00 3.96
4788 5120 8.623903 ACATGGACAACATTATATGATGAACAC 58.376 33.333 13.98 3.58 37.84 3.32
4821 5153 2.032054 CCAAATGAACGTCATAGCGCAT 59.968 45.455 11.47 0.00 35.76 4.73
4833 5165 5.461737 TGAGTTTCGAATTTGCCAAATGAAC 59.538 36.000 2.91 7.04 0.00 3.18
4842 5174 4.954092 AGGATCTGAGTTTCGAATTTGC 57.046 40.909 0.00 0.00 0.00 3.68
4845 5177 7.176589 AGTAGAAGGATCTGAGTTTCGAATT 57.823 36.000 0.00 0.00 37.10 2.17
4852 5184 6.358178 TCGTGATAGTAGAAGGATCTGAGTT 58.642 40.000 0.00 0.00 37.10 3.01
5103 5435 6.638610 CACTTCTTCTGGATCATACAAGTCT 58.361 40.000 0.00 0.00 0.00 3.24
5173 5505 3.619233 ACGGAAGGTGAAAATTTGTCG 57.381 42.857 0.00 0.00 0.00 4.35
5180 5512 3.822940 ACCACATAACGGAAGGTGAAAA 58.177 40.909 5.74 0.00 33.16 2.29
5192 5524 7.377766 AGTGATGAACATGTAACCACATAAC 57.622 36.000 17.15 12.59 43.73 1.89
5193 5525 7.994425 AAGTGATGAACATGTAACCACATAA 57.006 32.000 17.15 4.19 43.73 1.90
5232 5566 8.154856 TGCCTTAGTATCTGAAACTTAAACACT 58.845 33.333 0.00 0.00 0.00 3.55
5275 5609 6.467194 CCCATCTTCCTATACAAAATGGCCTA 60.467 42.308 3.32 0.00 32.61 3.93
5326 5660 6.049149 GCAGGATAACATCTTACAGTGCTAA 58.951 40.000 0.00 0.00 0.00 3.09
5375 5724 9.944663 TTAAATCAGCAACAATTAATACGGATC 57.055 29.630 0.00 0.00 0.00 3.36
5420 5864 5.454755 CCCCGATCCATATTAACTGTCACTT 60.455 44.000 0.00 0.00 0.00 3.16
5423 5867 3.326588 CCCCCGATCCATATTAACTGTCA 59.673 47.826 0.00 0.00 0.00 3.58
5443 5887 0.881796 GCTGTTGCAACTTACTCCCC 59.118 55.000 28.61 0.95 39.41 4.81
5739 6191 2.393271 AATCCAGAAGCCTGAGTTCG 57.607 50.000 0.00 0.00 43.02 3.95
5752 6204 3.616219 TCGGGTCCAAATACAAATCCAG 58.384 45.455 0.00 0.00 0.00 3.86
5778 6230 2.094390 TGTAAACATCGGTTCTCTCCCG 60.094 50.000 0.00 0.00 46.83 5.14
5880 6332 0.809636 TGCATAACAGGATCGCCACG 60.810 55.000 0.00 0.00 36.29 4.94
6001 6454 1.660607 CGAGCTCTTAGCATTCGCAAA 59.339 47.619 12.85 0.00 45.56 3.68
6054 6507 2.843701 AGAGTCAAGCCTGTTTCACAG 58.156 47.619 0.00 0.00 45.53 3.66
6070 6523 3.162666 TCCCGTGAGTTCAACATAGAGT 58.837 45.455 0.00 0.00 0.00 3.24
6071 6524 3.429547 CCTCCCGTGAGTTCAACATAGAG 60.430 52.174 0.00 0.00 36.86 2.43
6088 6543 0.255890 TATTGCAAGCCAGACCTCCC 59.744 55.000 4.94 0.00 0.00 4.30
6200 6657 1.190643 CTTGACCTCTCCTCCAGTCC 58.809 60.000 0.00 0.00 0.00 3.85
6232 6689 2.277969 TCACAGATACTCTCGTCGGTC 58.722 52.381 0.00 0.00 0.00 4.79
6238 6695 4.908730 CGACATGAATCACAGATACTCTCG 59.091 45.833 0.00 0.00 0.00 4.04
6397 6857 2.281070 ACTGCAGGCAACCACGAG 60.281 61.111 19.93 0.00 37.17 4.18
6513 6973 3.802139 TCTGTACGAGTTTTGCTGTTCAG 59.198 43.478 0.00 0.00 0.00 3.02
6517 6977 2.864343 GTGTCTGTACGAGTTTTGCTGT 59.136 45.455 0.00 0.00 0.00 4.40
6571 7032 2.896801 GAAGCGCATGGCCGGTATG 61.897 63.158 11.47 14.24 45.17 2.39
6572 7033 2.591715 GAAGCGCATGGCCGGTAT 60.592 61.111 11.47 0.00 45.17 2.73
6577 7038 1.748879 TACCTTGAAGCGCATGGCC 60.749 57.895 11.47 0.00 43.73 5.36
6578 7039 1.305219 TGTACCTTGAAGCGCATGGC 61.305 55.000 11.47 0.00 43.73 4.40
6581 7042 2.401583 TCATGTACCTTGAAGCGCAT 57.598 45.000 11.47 0.00 0.00 4.73
6585 7046 2.615912 GCAGGATCATGTACCTTGAAGC 59.384 50.000 9.42 7.58 33.91 3.86
6586 7047 4.148128 AGCAGGATCATGTACCTTGAAG 57.852 45.455 9.42 0.00 33.91 3.02
6607 7068 4.163458 AGGCCATTTCGAAGGAACTGTATA 59.837 41.667 5.01 0.00 40.86 1.47
6608 7069 3.054361 AGGCCATTTCGAAGGAACTGTAT 60.054 43.478 5.01 0.00 40.86 2.29
6627 7088 0.981956 GATGTTGCGCGTTTTTAGGC 59.018 50.000 8.43 0.00 0.00 3.93
6628 7089 2.323939 TGATGTTGCGCGTTTTTAGG 57.676 45.000 8.43 0.00 0.00 2.69
6638 7099 1.985447 AAGCAGCCGATGATGTTGCG 61.985 55.000 0.00 0.00 39.63 4.85
6665 7127 2.752354 CCGGGTGAATGAATTAACAGCA 59.248 45.455 0.00 0.00 33.31 4.41
6735 7197 1.271856 TTCGGGGATAAGAGTGTGCA 58.728 50.000 0.00 0.00 0.00 4.57
6802 7265 4.837860 TCCTGCAAGTTACATCCCATTTTT 59.162 37.500 0.00 0.00 0.00 1.94
6868 7331 3.507622 TCGTTTCAATCTCTCAGCTCAGA 59.492 43.478 0.00 0.00 0.00 3.27
6914 7378 8.842764 TCCAGTCTCATACCACTATATATACCA 58.157 37.037 0.00 0.00 0.00 3.25
6915 7379 9.696572 TTCCAGTCTCATACCACTATATATACC 57.303 37.037 0.00 0.00 0.00 2.73
6982 7464 0.088530 CGTCTTACGTGTTTCGACGC 59.911 55.000 0.00 0.00 43.33 5.19
6983 7465 1.662360 TCGTCTTACGTGTTTCGACG 58.338 50.000 15.66 15.66 43.14 5.12
6992 7474 8.976986 ATGTTTAGATAAGTTTCGTCTTACGT 57.023 30.769 0.00 0.00 43.14 3.57
7000 7482 9.959775 GTTCAAGAGATGTTTAGATAAGTTTCG 57.040 33.333 0.00 0.00 0.00 3.46
7006 7488 9.020813 CGATTCGTTCAAGAGATGTTTAGATAA 57.979 33.333 0.00 0.00 0.00 1.75
7017 7499 0.108329 GCCCCGATTCGTTCAAGAGA 60.108 55.000 5.20 0.00 0.00 3.10
7073 7555 1.820519 TGATGCAATGGCCTTTCAGTC 59.179 47.619 3.32 2.13 40.13 3.51
7106 7589 4.094887 GCATATCAACAACGAAGTGGATGT 59.905 41.667 10.70 3.42 45.00 3.06
7146 7629 1.268899 GCAGGCATCATCAGGCATTAC 59.731 52.381 0.00 0.00 0.00 1.89
7197 7680 5.243207 ACATTAGTCCCTTTTTACCGACAG 58.757 41.667 0.00 0.00 0.00 3.51
7233 7716 2.173569 ACTCACCTGGCCCAGATATTTC 59.826 50.000 13.74 0.00 32.44 2.17
7350 7833 5.529800 GTGGTAAAAAGTGCTAGTTTGGAGA 59.470 40.000 0.00 0.00 0.00 3.71
7369 7852 4.403432 GGGCAGTGTACTTATAGTGTGGTA 59.597 45.833 0.00 0.00 0.00 3.25
7424 7922 1.223487 GTGTGGTGTGTGGGTGTCT 59.777 57.895 0.00 0.00 0.00 3.41
7444 7942 2.303022 CAAAGTGGTGGAGCTCCTTCTA 59.697 50.000 32.28 19.95 36.82 2.10
7484 7982 3.773154 AGGAGGAGAGGGGAGGCC 61.773 72.222 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.