Multiple sequence alignment - TraesCS1B01G016900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G016900 chr1B 100.000 4230 0 0 1 4230 8181655 8185884 0.000000e+00 7812.0
1 TraesCS1B01G016900 chr1B 92.352 1033 58 10 2931 3950 639482340 639483364 0.000000e+00 1450.0
2 TraesCS1B01G016900 chr1B 88.088 1041 77 21 2667 3682 17831443 17830425 0.000000e+00 1192.0
3 TraesCS1B01G016900 chr1B 88.169 710 41 25 1969 2659 639480882 639481567 0.000000e+00 806.0
4 TraesCS1B01G016900 chr1B 87.151 716 60 17 1969 2661 17832557 17831851 0.000000e+00 784.0
5 TraesCS1B01G016900 chr1B 81.333 900 65 39 2667 3516 8193765 8194611 1.660000e-178 636.0
6 TraesCS1B01G016900 chr1B 86.179 615 50 13 1294 1894 17833154 17832561 2.150000e-177 632.0
7 TraesCS1B01G016900 chr1B 85.159 566 47 12 1337 1894 639480342 639480878 2.880000e-151 545.0
8 TraesCS1B01G016900 chr1B 84.615 559 49 20 682 1210 639449743 639450294 4.850000e-144 521.0
9 TraesCS1B01G016900 chr1B 88.859 377 22 10 3 360 639448479 639448854 3.000000e-121 446.0
10 TraesCS1B01G016900 chr1B 92.953 298 12 5 1 297 17836599 17836310 3.910000e-115 425.0
11 TraesCS1B01G016900 chr1B 90.476 273 8 6 2667 2931 639481999 639482261 1.130000e-90 344.0
12 TraesCS1B01G016900 chr1B 80.260 461 39 33 792 1210 17833809 17833359 2.470000e-77 300.0
13 TraesCS1B01G016900 chr1B 84.753 223 15 11 342 558 639448862 639449071 5.540000e-49 206.0
14 TraesCS1B01G016900 chr1B 86.517 178 11 2 3682 3846 8194814 8194991 2.600000e-42 183.0
15 TraesCS1B01G016900 chr1B 89.362 141 10 2 2523 2663 8193220 8193355 5.620000e-39 172.0
16 TraesCS1B01G016900 chr1B 93.151 73 4 1 3682 3753 17830358 17830286 5.780000e-19 106.0
17 TraesCS1B01G016900 chr7A 87.654 1377 97 38 1310 2661 692311269 692309941 0.000000e+00 1533.0
18 TraesCS1B01G016900 chr7A 87.081 1045 83 22 2935 3951 692309247 692308227 0.000000e+00 1134.0
19 TraesCS1B01G016900 chr7A 87.249 698 50 18 630 1298 692312113 692311426 0.000000e+00 760.0
20 TraesCS1B01G016900 chr7A 92.400 250 12 3 2667 2916 692309535 692309293 2.420000e-92 350.0
21 TraesCS1B01G016900 chr7A 87.097 279 15 10 1 273 692313085 692312822 3.200000e-76 296.0
22 TraesCS1B01G016900 chr7A 80.972 247 31 7 295 537 692312580 692312346 9.340000e-42 182.0
23 TraesCS1B01G016900 chr7A 90.164 61 3 1 781 838 692218252 692218192 4.540000e-10 76.8
24 TraesCS1B01G016900 chr1A 86.624 1398 93 36 1310 2661 6763752 6762403 0.000000e+00 1459.0
25 TraesCS1B01G016900 chr1A 85.782 1048 83 25 2666 3681 6761924 6760911 0.000000e+00 1050.0
26 TraesCS1B01G016900 chr1A 84.527 1047 91 29 2678 3680 6633917 6632898 0.000000e+00 970.0
27 TraesCS1B01G016900 chr1A 88.649 696 47 18 2676 3346 6720547 6719859 0.000000e+00 819.0
28 TraesCS1B01G016900 chr1A 86.449 583 36 23 748 1298 6764464 6763893 2.180000e-167 599.0
29 TraesCS1B01G016900 chr1A 83.361 601 45 25 1 589 6765322 6764765 4.880000e-139 505.0
30 TraesCS1B01G016900 chr1A 85.560 277 26 7 3682 3946 6760842 6760568 1.160000e-70 278.0
31 TraesCS1B01G016900 chr1A 81.949 277 20 9 165 438 6765830 6765581 1.540000e-49 207.0
32 TraesCS1B01G016900 chr1A 86.885 183 15 5 1 174 6766425 6766243 3.340000e-46 196.0
33 TraesCS1B01G016900 chr1A 89.362 141 11 1 2528 2668 6634475 6634339 1.560000e-39 174.0
34 TraesCS1B01G016900 chr1A 88.028 142 13 1 2528 2669 6721098 6720961 9.410000e-37 165.0
35 TraesCS1B01G016900 chr1A 88.525 122 10 3 3398 3519 6719860 6719743 1.230000e-30 145.0
36 TraesCS1B01G016900 chr1D 88.227 739 52 22 1946 2661 5454747 5455473 0.000000e+00 850.0
37 TraesCS1B01G016900 chr1D 83.805 778 75 19 2933 3681 5456151 5456906 0.000000e+00 691.0
38 TraesCS1B01G016900 chr1D 86.385 639 60 15 1294 1923 5454131 5454751 0.000000e+00 673.0
39 TraesCS1B01G016900 chr1D 84.871 542 39 19 781 1287 5453538 5454071 1.360000e-139 507.0
40 TraesCS1B01G016900 chr1D 80.153 524 39 26 1 510 5452846 5453318 8.770000e-87 331.0
41 TraesCS1B01G016900 chr1D 89.256 242 14 5 2676 2917 5455880 5456109 4.140000e-75 292.0
42 TraesCS1B01G016900 chr1D 87.500 152 10 3 3682 3824 5456975 5457126 2.620000e-37 167.0
43 TraesCS1B01G016900 chr1D 88.710 124 12 2 3821 3943 5457181 5457303 2.630000e-32 150.0
44 TraesCS1B01G016900 chr5B 95.745 282 10 2 3950 4230 670506498 670506218 1.790000e-123 453.0
45 TraesCS1B01G016900 chr2D 95.714 280 11 1 3952 4230 441880554 441880833 2.320000e-122 449.0
46 TraesCS1B01G016900 chr7D 94.178 292 15 2 3938 4228 101077254 101076964 1.080000e-120 444.0
47 TraesCS1B01G016900 chr7D 95.652 276 11 1 3951 4225 142209816 142209541 3.880000e-120 442.0
48 TraesCS1B01G016900 chr7D 95.307 277 12 1 3952 4227 21589503 21589227 5.020000e-119 438.0
49 TraesCS1B01G016900 chr4A 95.000 280 13 1 3949 4227 649390931 649391210 5.020000e-119 438.0
50 TraesCS1B01G016900 chr5D 95.290 276 11 2 3951 4225 405160646 405160920 1.810000e-118 436.0
51 TraesCS1B01G016900 chr5D 94.964 278 13 1 3952 4228 493257971 493258248 6.500000e-118 435.0
52 TraesCS1B01G016900 chr6A 94.643 280 14 1 3952 4230 181006249 181006528 2.340000e-117 433.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G016900 chr1B 8181655 8185884 4229 False 7812.000000 7812 100.000000 1 4230 1 chr1B.!!$F1 4229
1 TraesCS1B01G016900 chr1B 639480342 639483364 3022 False 786.250000 1450 89.039000 1337 3950 4 chr1B.!!$F4 2613
2 TraesCS1B01G016900 chr1B 17830286 17836599 6313 True 573.166667 1192 87.963667 1 3753 6 chr1B.!!$R1 3752
3 TraesCS1B01G016900 chr1B 639448479 639450294 1815 False 391.000000 521 86.075667 3 1210 3 chr1B.!!$F3 1207
4 TraesCS1B01G016900 chr1B 8193220 8194991 1771 False 330.333333 636 85.737333 2523 3846 3 chr1B.!!$F2 1323
5 TraesCS1B01G016900 chr7A 692308227 692313085 4858 True 709.166667 1533 87.075500 1 3951 6 chr7A.!!$R2 3950
6 TraesCS1B01G016900 chr1A 6760568 6766425 5857 True 613.428571 1459 85.230000 1 3946 7 chr1A.!!$R3 3945
7 TraesCS1B01G016900 chr1A 6632898 6634475 1577 True 572.000000 970 86.944500 2528 3680 2 chr1A.!!$R1 1152
8 TraesCS1B01G016900 chr1A 6719743 6721098 1355 True 376.333333 819 88.400667 2528 3519 3 chr1A.!!$R2 991
9 TraesCS1B01G016900 chr1D 5452846 5457303 4457 False 457.625000 850 86.113375 1 3943 8 chr1D.!!$F1 3942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
839 4859 0.024111 CCGTTTATTCGTTCGTCGGC 59.976 55.0 0.00 0.0 40.32 5.54 F
1944 6337 0.244450 TGCCCTTTAGACGTACACGG 59.756 55.0 6.72 0.0 44.95 4.94 F
2455 6921 0.249699 ATCGACTGTTGTGCCGAACA 60.250 50.0 0.00 0.0 36.85 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2313 6775 0.249120 TCGTCACCCACATCATGTCC 59.751 55.0 0.00 0.0 0.00 4.02 R
3040 8173 0.546122 ACTTGCCTGGCGAATATCCA 59.454 50.0 14.98 0.0 0.00 3.41 R
4142 9470 0.181587 AGCGAGAGAGATCGGGAGAA 59.818 55.0 0.00 0.0 45.37 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.891366 CCATCAACAAGTTTGAGGACCTT 59.109 43.478 0.00 0.00 32.54 3.50
41 42 4.135747 CTTAAGAAGAAGGAGGAGGCTG 57.864 50.000 0.00 0.00 0.00 4.85
42 43 0.617935 AAGAAGAAGGAGGAGGCTGC 59.382 55.000 0.00 0.00 0.00 5.25
94 98 3.885297 CGGGATCCTCATAAACAAATGCT 59.115 43.478 12.58 0.00 0.00 3.79
297 1659 2.084546 ACTGCCTCCGCTTCAAAATAC 58.915 47.619 0.00 0.00 35.36 1.89
298 1660 2.083774 CTGCCTCCGCTTCAAAATACA 58.916 47.619 0.00 0.00 35.36 2.29
299 1661 2.083774 TGCCTCCGCTTCAAAATACAG 58.916 47.619 0.00 0.00 35.36 2.74
300 1662 2.084546 GCCTCCGCTTCAAAATACAGT 58.915 47.619 0.00 0.00 0.00 3.55
301 1663 2.096013 GCCTCCGCTTCAAAATACAGTC 59.904 50.000 0.00 0.00 0.00 3.51
302 1664 3.600388 CCTCCGCTTCAAAATACAGTCT 58.400 45.455 0.00 0.00 0.00 3.24
303 1665 3.619038 CCTCCGCTTCAAAATACAGTCTC 59.381 47.826 0.00 0.00 0.00 3.36
304 1666 3.596214 TCCGCTTCAAAATACAGTCTCC 58.404 45.455 0.00 0.00 0.00 3.71
305 1667 2.348666 CCGCTTCAAAATACAGTCTCCG 59.651 50.000 0.00 0.00 0.00 4.63
306 1668 2.222819 CGCTTCAAAATACAGTCTCCGC 60.223 50.000 0.00 0.00 0.00 5.54
307 1669 3.003480 GCTTCAAAATACAGTCTCCGCT 58.997 45.455 0.00 0.00 0.00 5.52
308 1670 3.437049 GCTTCAAAATACAGTCTCCGCTT 59.563 43.478 0.00 0.00 0.00 4.68
309 1671 4.436183 GCTTCAAAATACAGTCTCCGCTTC 60.436 45.833 0.00 0.00 0.00 3.86
310 1672 4.265904 TCAAAATACAGTCTCCGCTTCA 57.734 40.909 0.00 0.00 0.00 3.02
311 1673 4.637276 TCAAAATACAGTCTCCGCTTCAA 58.363 39.130 0.00 0.00 0.00 2.69
312 1674 5.060506 TCAAAATACAGTCTCCGCTTCAAA 58.939 37.500 0.00 0.00 0.00 2.69
313 1675 5.529430 TCAAAATACAGTCTCCGCTTCAAAA 59.471 36.000 0.00 0.00 0.00 2.44
314 1676 6.206634 TCAAAATACAGTCTCCGCTTCAAAAT 59.793 34.615 0.00 0.00 0.00 1.82
315 1677 7.389330 TCAAAATACAGTCTCCGCTTCAAAATA 59.611 33.333 0.00 0.00 0.00 1.40
325 1687 6.759827 TCTCCGCTTCAAAATATAAGGTGTAC 59.240 38.462 0.00 0.00 0.00 2.90
354 1745 5.994250 CTGTCCCTCAGAAATAAATCAGGA 58.006 41.667 0.00 0.00 46.27 3.86
359 1750 8.753133 GTCCCTCAGAAATAAATCAGGATTTTT 58.247 33.333 12.06 2.65 40.99 1.94
402 1803 3.737355 GCAACGGATGGAGTAGTACCTTC 60.737 52.174 0.00 0.00 0.00 3.46
456 1857 3.190535 GTGTTGAAATATGTTGCCCGTCT 59.809 43.478 0.00 0.00 0.00 4.18
457 1858 3.438781 TGTTGAAATATGTTGCCCGTCTC 59.561 43.478 0.00 0.00 0.00 3.36
458 1859 3.627395 TGAAATATGTTGCCCGTCTCT 57.373 42.857 0.00 0.00 0.00 3.10
459 1860 3.531538 TGAAATATGTTGCCCGTCTCTC 58.468 45.455 0.00 0.00 0.00 3.20
460 1861 3.197766 TGAAATATGTTGCCCGTCTCTCT 59.802 43.478 0.00 0.00 0.00 3.10
461 1862 3.460857 AATATGTTGCCCGTCTCTCTC 57.539 47.619 0.00 0.00 0.00 3.20
462 1863 2.145397 TATGTTGCCCGTCTCTCTCT 57.855 50.000 0.00 0.00 0.00 3.10
463 1864 0.820871 ATGTTGCCCGTCTCTCTCTC 59.179 55.000 0.00 0.00 0.00 3.20
464 1865 0.251386 TGTTGCCCGTCTCTCTCTCT 60.251 55.000 0.00 0.00 0.00 3.10
503 1906 3.054434 TCGGTCTTTTGGATGGATGATGT 60.054 43.478 0.00 0.00 0.00 3.06
504 1907 3.065786 CGGTCTTTTGGATGGATGATGTG 59.934 47.826 0.00 0.00 0.00 3.21
527 1931 5.105797 TGTGAATAGGTTGGAACATGAATGC 60.106 40.000 0.00 0.00 39.30 3.56
551 1958 5.939764 TTCACTGTAATAGACTGCATCCT 57.060 39.130 0.00 0.00 0.00 3.24
589 2048 0.110486 AAGAATGAGGGGCGTGTGTT 59.890 50.000 0.00 0.00 0.00 3.32
593 2052 4.643387 GAGGGGCGTGTGTTGGCT 62.643 66.667 0.00 0.00 0.00 4.75
594 2053 4.954970 AGGGGCGTGTGTTGGCTG 62.955 66.667 0.00 0.00 0.00 4.85
670 4674 0.389296 AAATTTACCGCTTTGCCCGC 60.389 50.000 0.00 0.00 0.00 6.13
696 4700 1.730902 CGCGCATCCGTCCATCTAG 60.731 63.158 8.75 0.00 36.67 2.43
697 4701 1.364171 GCGCATCCGTCCATCTAGT 59.636 57.895 0.30 0.00 36.67 2.57
770 4774 3.487372 CGGAAAAAGGAAGGAAGGAGTT 58.513 45.455 0.00 0.00 0.00 3.01
774 4778 4.432980 AAAAGGAAGGAAGGAGTTTCGA 57.567 40.909 0.00 0.00 36.62 3.71
775 4779 4.642466 AAAGGAAGGAAGGAGTTTCGAT 57.358 40.909 0.00 0.00 36.62 3.59
776 4780 3.897141 AGGAAGGAAGGAGTTTCGATC 57.103 47.619 0.00 0.00 36.62 3.69
777 4781 2.166664 AGGAAGGAAGGAGTTTCGATCG 59.833 50.000 9.36 9.36 36.62 3.69
794 4814 4.329801 TCGATCGTGTGATTGAATGAAAGG 59.670 41.667 15.94 0.00 41.17 3.11
839 4859 0.024111 CCGTTTATTCGTTCGTCGGC 59.976 55.000 0.00 0.00 40.32 5.54
868 4888 3.237522 GCCAGACGACGATACAGAC 57.762 57.895 0.00 0.00 0.00 3.51
869 4889 0.589229 GCCAGACGACGATACAGACG 60.589 60.000 0.00 0.00 35.60 4.18
870 4890 0.725686 CCAGACGACGATACAGACGT 59.274 55.000 0.00 0.00 46.58 4.34
871 4891 1.929169 CCAGACGACGATACAGACGTA 59.071 52.381 0.00 0.00 43.97 3.57
1035 5103 4.521062 GCCATCGTGCTCGGCTCT 62.521 66.667 8.49 0.00 42.78 4.09
1061 5133 1.936767 TTCCCATGCTCATCACCCCC 61.937 60.000 0.00 0.00 0.00 5.40
1088 5160 3.220110 TCGGTCCACATCTATCTACCAC 58.780 50.000 0.00 0.00 0.00 4.16
1112 5191 1.069204 GGAATCTATGGTGCTCTCGCA 59.931 52.381 0.00 0.00 45.60 5.10
1206 5285 2.423892 GCTTCCTGCTTAGGGTTTTAGC 59.576 50.000 0.00 0.00 38.95 3.09
1207 5286 3.874193 GCTTCCTGCTTAGGGTTTTAGCT 60.874 47.826 0.00 0.00 38.95 3.32
1209 5288 5.497474 CTTCCTGCTTAGGGTTTTAGCTTA 58.503 41.667 0.00 0.00 35.93 3.09
1210 5289 4.840271 TCCTGCTTAGGGTTTTAGCTTAC 58.160 43.478 0.00 0.00 35.93 2.34
1211 5290 3.945921 CCTGCTTAGGGTTTTAGCTTACC 59.054 47.826 0.00 0.00 35.93 2.85
1212 5291 4.324331 CCTGCTTAGGGTTTTAGCTTACCT 60.324 45.833 10.90 6.10 35.93 3.08
1213 5292 5.104652 CCTGCTTAGGGTTTTAGCTTACCTA 60.105 44.000 10.90 5.29 35.93 3.08
1283 5398 6.758886 CCTACTCTAGTTTACTTTGATGGCTG 59.241 42.308 0.00 0.00 0.00 4.85
1304 5650 5.279106 GCTGCAAATAATCCAATCTGCCATA 60.279 40.000 0.00 0.00 0.00 2.74
1305 5651 6.088016 TGCAAATAATCCAATCTGCCATAC 57.912 37.500 0.00 0.00 0.00 2.39
1342 5692 1.879796 CGCAGGTTCTTCCTCAAAGCT 60.880 52.381 0.00 0.00 46.24 3.74
1378 5736 4.862574 GCAAAAACTTTGTTTCTTCTCGGT 59.137 37.500 1.45 0.00 0.00 4.69
1403 5761 1.415289 TGGCAGGATATCTCAGCACTG 59.585 52.381 2.05 1.62 0.00 3.66
1475 5837 6.544564 GCTTGCCCATGTAATTACCTACTTTA 59.455 38.462 13.01 0.00 0.00 1.85
1476 5838 7.067737 GCTTGCCCATGTAATTACCTACTTTAA 59.932 37.037 13.01 0.81 0.00 1.52
1477 5839 9.131791 CTTGCCCATGTAATTACCTACTTTAAT 57.868 33.333 13.01 0.00 0.00 1.40
1478 5840 8.458573 TGCCCATGTAATTACCTACTTTAATG 57.541 34.615 13.01 7.13 0.00 1.90
1497 5860 2.265367 TGATCACTTACCTTGCCTCCA 58.735 47.619 0.00 0.00 0.00 3.86
1528 5895 2.099263 TCTCAGTCGGGTTGATTCGATC 59.901 50.000 0.00 0.00 37.73 3.69
1529 5896 1.136305 TCAGTCGGGTTGATTCGATCC 59.864 52.381 0.00 0.00 37.73 3.36
1530 5897 0.464452 AGTCGGGTTGATTCGATCCC 59.536 55.000 0.00 0.50 37.73 3.85
1625 5996 3.728373 GGGAAGGCCGGGACACAT 61.728 66.667 0.92 0.00 33.83 3.21
1646 6017 1.153647 CGGTAGCGATCAGTTGGCA 60.154 57.895 9.07 0.00 0.00 4.92
1661 6032 3.068590 AGTTGGCATCTCAGGTTTGTTTG 59.931 43.478 0.00 0.00 0.00 2.93
1707 6088 0.890683 GGCCAGATTGGTTTGACAGG 59.109 55.000 0.00 0.00 40.46 4.00
1723 6105 7.225734 GGTTTGACAGGCTCTAGATCTAAAATC 59.774 40.741 3.57 0.00 0.00 2.17
1728 6110 2.664085 GCTCTAGATCTAAAATCGCGGC 59.336 50.000 6.13 0.00 0.00 6.53
1746 6128 1.702299 CGCTTGACTCCGCTAAACG 59.298 57.895 0.00 0.00 43.15 3.60
1782 6164 4.525874 CAGTATCAGGGATGAGATACAGCA 59.474 45.833 13.20 0.00 45.63 4.41
1872 6262 4.179926 TCTTGTCTCGATTCTCAACCAG 57.820 45.455 0.00 0.00 0.00 4.00
1943 6336 1.924524 CATGCCCTTTAGACGTACACG 59.075 52.381 0.00 0.00 46.33 4.49
1944 6337 0.244450 TGCCCTTTAGACGTACACGG 59.756 55.000 6.72 0.00 44.95 4.94
1946 6339 1.337167 GCCCTTTAGACGTACACGGTT 60.337 52.381 6.72 0.00 44.95 4.44
1947 6340 2.094752 GCCCTTTAGACGTACACGGTTA 60.095 50.000 6.72 0.00 44.95 2.85
1948 6341 3.613910 GCCCTTTAGACGTACACGGTTAA 60.614 47.826 6.72 2.01 44.95 2.01
1977 6414 2.286365 TTTGGCCCTCTGGTTTGTAG 57.714 50.000 0.00 0.00 0.00 2.74
1985 6422 4.767409 GCCCTCTGGTTTGTAGAATTCTTT 59.233 41.667 14.36 0.00 0.00 2.52
2087 6528 1.396653 AGGGTCTGGTTCGTATACCG 58.603 55.000 0.00 0.00 41.28 4.02
2091 6532 3.319122 GGGTCTGGTTCGTATACCGTAAT 59.681 47.826 0.00 0.00 41.28 1.89
2092 6533 4.293415 GGTCTGGTTCGTATACCGTAATG 58.707 47.826 0.00 0.00 41.28 1.90
2313 6775 5.897377 ATTTACAGGGTTGGAAGATTTCG 57.103 39.130 0.00 0.00 0.00 3.46
2412 6875 8.092687 TCAAATACAGTACAGGTAAGGTCTTTC 58.907 37.037 0.00 0.00 0.00 2.62
2413 6876 7.793948 AATACAGTACAGGTAAGGTCTTTCT 57.206 36.000 0.00 0.00 0.00 2.52
2416 6879 6.522946 ACAGTACAGGTAAGGTCTTTCTTTC 58.477 40.000 0.00 0.00 0.00 2.62
2420 6883 7.932491 AGTACAGGTAAGGTCTTTCTTTCTTTC 59.068 37.037 0.00 0.00 0.00 2.62
2423 6886 7.283354 ACAGGTAAGGTCTTTCTTTCTTTCTTG 59.717 37.037 0.00 0.00 0.00 3.02
2455 6921 0.249699 ATCGACTGTTGTGCCGAACA 60.250 50.000 0.00 0.00 36.85 3.18
2456 6922 0.249699 TCGACTGTTGTGCCGAACAT 60.250 50.000 0.00 0.00 38.99 2.71
2457 6923 1.000052 TCGACTGTTGTGCCGAACATA 60.000 47.619 0.00 0.00 38.99 2.29
2458 6924 1.999735 CGACTGTTGTGCCGAACATAT 59.000 47.619 0.00 0.00 38.99 1.78
2459 6925 3.119424 TCGACTGTTGTGCCGAACATATA 60.119 43.478 0.00 0.00 38.99 0.86
2462 6928 4.513442 ACTGTTGTGCCGAACATATATGT 58.487 39.130 12.75 12.75 44.20 2.29
2463 6929 5.666462 ACTGTTGTGCCGAACATATATGTA 58.334 37.500 18.56 0.00 40.80 2.29
2464 6930 6.288294 ACTGTTGTGCCGAACATATATGTAT 58.712 36.000 18.56 9.14 40.80 2.29
2465 6931 6.423905 ACTGTTGTGCCGAACATATATGTATC 59.576 38.462 18.56 15.52 40.80 2.24
2466 6932 6.521162 TGTTGTGCCGAACATATATGTATCT 58.479 36.000 18.56 3.47 40.80 1.98
2467 6933 6.989759 TGTTGTGCCGAACATATATGTATCTT 59.010 34.615 18.56 3.09 40.80 2.40
2469 6935 8.433126 GTTGTGCCGAACATATATGTATCTTAC 58.567 37.037 18.56 14.61 40.80 2.34
2470 6936 7.662897 TGTGCCGAACATATATGTATCTTACA 58.337 34.615 18.56 16.62 40.80 2.41
2471 6937 8.311109 TGTGCCGAACATATATGTATCTTACAT 58.689 33.333 18.56 0.44 42.20 2.29
2520 7005 6.877611 TTTCAGGTTACCAAGAAACATCTC 57.122 37.500 14.89 0.00 29.48 2.75
2599 7084 1.003233 GGACAAGGGATGAGGTTCGTT 59.997 52.381 0.00 0.00 0.00 3.85
2625 7110 7.597386 GGAACATTCCTGCTCCATAAATATTC 58.403 38.462 3.24 0.00 44.11 1.75
2794 7831 3.687212 TGCCTTGTACCGAAACATGTATG 59.313 43.478 0.00 0.00 0.00 2.39
2795 7832 3.687698 GCCTTGTACCGAAACATGTATGT 59.312 43.478 0.00 0.00 44.20 2.29
2796 7833 4.871557 GCCTTGTACCGAAACATGTATGTA 59.128 41.667 0.00 0.00 40.80 2.29
2797 7834 5.526111 GCCTTGTACCGAAACATGTATGTAT 59.474 40.000 0.00 0.00 40.80 2.29
2798 7835 6.702723 GCCTTGTACCGAAACATGTATGTATA 59.297 38.462 0.00 0.00 40.80 1.47
2799 7836 7.386848 GCCTTGTACCGAAACATGTATGTATAT 59.613 37.037 0.00 0.00 40.80 0.86
2833 7873 2.623889 GGAGCTACATATCACTCACGGT 59.376 50.000 0.00 0.00 0.00 4.83
2853 7899 6.305399 CACGGTTGCACTTATTTATCTTGTTG 59.695 38.462 0.00 0.00 0.00 3.33
3040 8173 2.031120 CAACAACTGGAACATGGTGGT 58.969 47.619 0.00 0.00 32.86 4.16
3041 8174 1.691196 ACAACTGGAACATGGTGGTG 58.309 50.000 0.00 0.00 38.20 4.17
3042 8175 0.961019 CAACTGGAACATGGTGGTGG 59.039 55.000 0.00 0.00 38.20 4.61
3070 8217 0.456221 CAGGCAAGTCGTCGGTCTAT 59.544 55.000 0.00 0.00 0.00 1.98
3087 8234 8.488764 GTCGGTCTATCTTATGCAATTCTTTAC 58.511 37.037 0.00 0.00 0.00 2.01
3092 8243 5.484173 TCTTATGCAATTCTTTACTGGCG 57.516 39.130 0.00 0.00 0.00 5.69
3115 8270 3.305897 TGTTGCTTACATGATTCGCTACG 59.694 43.478 0.00 0.00 0.00 3.51
3210 8374 0.485099 TCCAGCTCTAGGATCCTCCC 59.515 60.000 20.22 5.15 37.19 4.30
3359 8538 4.728110 TTCCTGCAGCTGCCGCAT 62.728 61.111 34.64 0.00 39.02 4.73
3382 8561 7.498570 GCATTCTCCTCTTGTATCTCTTCAAAT 59.501 37.037 0.00 0.00 0.00 2.32
3438 8617 2.837591 AGCCAGGTTTGGTTTCAGTTTT 59.162 40.909 0.00 0.00 46.80 2.43
3444 8623 6.127451 CCAGGTTTGGTTTCAGTTTTCTAACT 60.127 38.462 0.00 0.00 41.23 2.24
3458 8637 8.819974 CAGTTTTCTAACTTTGCAAACAATGAT 58.180 29.630 8.05 0.00 41.85 2.45
3459 8638 8.819974 AGTTTTCTAACTTTGCAAACAATGATG 58.180 29.630 8.05 0.00 41.85 3.07
3460 8639 8.816144 GTTTTCTAACTTTGCAAACAATGATGA 58.184 29.630 8.05 0.00 35.21 2.92
3461 8640 9.545105 TTTTCTAACTTTGCAAACAATGATGAT 57.455 25.926 8.05 0.00 35.21 2.45
3465 8644 4.529377 ACTTTGCAAACAATGATGATCCCT 59.471 37.500 8.05 0.00 35.21 4.20
3473 8654 7.765360 GCAAACAATGATGATCCCTTTTTATCA 59.235 33.333 0.00 0.00 36.60 2.15
3477 8658 8.984855 ACAATGATGATCCCTTTTTATCAATGT 58.015 29.630 5.32 5.32 37.18 2.71
3495 8676 6.804677 TCAATGTGCTCTGTTTACACAAATT 58.195 32.000 0.00 0.00 46.47 1.82
3541 8723 8.854117 GGATGATGATTTTAATTGGCTCTAGTT 58.146 33.333 0.00 0.00 0.00 2.24
3542 8724 9.674824 GATGATGATTTTAATTGGCTCTAGTTG 57.325 33.333 0.00 0.00 0.00 3.16
3543 8725 7.483307 TGATGATTTTAATTGGCTCTAGTTGC 58.517 34.615 0.00 0.00 0.00 4.17
3544 8726 6.832520 TGATTTTAATTGGCTCTAGTTGCA 57.167 33.333 11.30 0.00 0.00 4.08
3594 8776 1.150567 CTCGAGCGAAGGAAGCATGG 61.151 60.000 0.00 0.00 37.01 3.66
3614 8796 0.537653 GGTGGAAGCTACCTGGACTC 59.462 60.000 0.00 0.00 35.30 3.36
3727 8979 6.292703 GCCTTGTGTAAATAGGTATACTTGCG 60.293 42.308 2.25 0.00 0.00 4.85
3860 9187 2.513753 TGGATGTTCGTGCCATTCTTT 58.486 42.857 0.00 0.00 0.00 2.52
3951 9279 7.660112 TGAAAGCATCATTTTCACTTGTATGT 58.340 30.769 0.00 0.00 39.05 2.29
3952 9280 7.595875 TGAAAGCATCATTTTCACTTGTATGTG 59.404 33.333 0.00 0.00 39.05 3.21
3953 9281 6.579666 AGCATCATTTTCACTTGTATGTGT 57.420 33.333 0.00 0.00 38.90 3.72
3954 9282 6.985117 AGCATCATTTTCACTTGTATGTGTT 58.015 32.000 0.00 0.00 38.90 3.32
3955 9283 6.864685 AGCATCATTTTCACTTGTATGTGTTG 59.135 34.615 0.00 0.00 38.90 3.33
3956 9284 6.862608 GCATCATTTTCACTTGTATGTGTTGA 59.137 34.615 0.00 0.00 38.90 3.18
3957 9285 7.381948 GCATCATTTTCACTTGTATGTGTTGAA 59.618 33.333 0.00 0.00 38.90 2.69
3958 9286 9.247126 CATCATTTTCACTTGTATGTGTTGAAA 57.753 29.630 0.00 0.00 38.90 2.69
3959 9287 8.627487 TCATTTTCACTTGTATGTGTTGAAAC 57.373 30.769 0.00 0.00 38.90 2.78
3960 9288 7.430793 TCATTTTCACTTGTATGTGTTGAAACG 59.569 33.333 0.00 0.00 38.90 3.60
3961 9289 5.804692 TTCACTTGTATGTGTTGAAACGT 57.195 34.783 0.00 0.00 38.90 3.99
3962 9290 5.150342 TCACTTGTATGTGTTGAAACGTG 57.850 39.130 0.00 0.00 38.90 4.49
3963 9291 4.870991 TCACTTGTATGTGTTGAAACGTGA 59.129 37.500 0.00 0.00 38.90 4.35
3964 9292 5.525745 TCACTTGTATGTGTTGAAACGTGAT 59.474 36.000 0.00 0.00 38.90 3.06
3965 9293 6.702282 TCACTTGTATGTGTTGAAACGTGATA 59.298 34.615 0.00 0.00 38.90 2.15
3966 9294 7.386573 TCACTTGTATGTGTTGAAACGTGATAT 59.613 33.333 0.00 0.00 38.90 1.63
3967 9295 7.688167 CACTTGTATGTGTTGAAACGTGATATC 59.312 37.037 0.00 0.00 33.61 1.63
3968 9296 7.602644 ACTTGTATGTGTTGAAACGTGATATCT 59.397 33.333 3.98 0.00 0.00 1.98
3969 9297 7.899178 TGTATGTGTTGAAACGTGATATCTT 57.101 32.000 3.98 0.00 0.00 2.40
3970 9298 8.317891 TGTATGTGTTGAAACGTGATATCTTT 57.682 30.769 3.98 0.00 0.00 2.52
3971 9299 8.227119 TGTATGTGTTGAAACGTGATATCTTTG 58.773 33.333 3.98 0.00 0.00 2.77
3972 9300 6.612247 TGTGTTGAAACGTGATATCTTTGT 57.388 33.333 3.98 0.00 0.00 2.83
3973 9301 7.716768 TGTGTTGAAACGTGATATCTTTGTA 57.283 32.000 3.98 0.00 0.00 2.41
3974 9302 8.144155 TGTGTTGAAACGTGATATCTTTGTAA 57.856 30.769 3.98 0.00 0.00 2.41
3975 9303 8.779303 TGTGTTGAAACGTGATATCTTTGTAAT 58.221 29.630 3.98 0.00 0.00 1.89
3976 9304 9.607285 GTGTTGAAACGTGATATCTTTGTAATT 57.393 29.630 3.98 0.00 0.00 1.40
3983 9311 9.621629 AACGTGATATCTTTGTAATTATTGGGA 57.378 29.630 3.98 0.00 0.00 4.37
3984 9312 9.052759 ACGTGATATCTTTGTAATTATTGGGAC 57.947 33.333 3.98 0.00 0.00 4.46
3985 9313 9.273016 CGTGATATCTTTGTAATTATTGGGACT 57.727 33.333 3.98 0.00 0.00 3.85
3991 9319 9.927081 ATCTTTGTAATTATTGGGACTGATTCT 57.073 29.630 0.00 0.00 0.00 2.40
3992 9320 9.396022 TCTTTGTAATTATTGGGACTGATTCTC 57.604 33.333 0.00 0.00 0.00 2.87
3993 9321 8.519799 TTTGTAATTATTGGGACTGATTCTCC 57.480 34.615 0.00 0.00 0.00 3.71
3994 9322 7.451731 TGTAATTATTGGGACTGATTCTCCT 57.548 36.000 0.00 0.00 0.00 3.69
3995 9323 8.561536 TGTAATTATTGGGACTGATTCTCCTA 57.438 34.615 0.00 0.00 0.00 2.94
3996 9324 9.170890 TGTAATTATTGGGACTGATTCTCCTAT 57.829 33.333 0.00 0.00 0.00 2.57
4001 9329 9.621239 TTATTGGGACTGATTCTCCTATTATCT 57.379 33.333 0.00 0.00 0.00 1.98
4002 9330 7.546250 TTGGGACTGATTCTCCTATTATCTC 57.454 40.000 0.00 0.00 0.00 2.75
4003 9331 6.868826 TGGGACTGATTCTCCTATTATCTCT 58.131 40.000 0.00 0.00 0.00 3.10
4004 9332 8.001300 TGGGACTGATTCTCCTATTATCTCTA 57.999 38.462 0.00 0.00 0.00 2.43
4005 9333 8.112822 TGGGACTGATTCTCCTATTATCTCTAG 58.887 40.741 0.00 0.00 0.00 2.43
4006 9334 7.068226 GGGACTGATTCTCCTATTATCTCTAGC 59.932 44.444 0.00 0.00 0.00 3.42
4007 9335 7.068226 GGACTGATTCTCCTATTATCTCTAGCC 59.932 44.444 0.00 0.00 0.00 3.93
4008 9336 7.708624 ACTGATTCTCCTATTATCTCTAGCCT 58.291 38.462 0.00 0.00 0.00 4.58
4009 9337 8.176780 ACTGATTCTCCTATTATCTCTAGCCTT 58.823 37.037 0.00 0.00 0.00 4.35
4010 9338 8.359875 TGATTCTCCTATTATCTCTAGCCTTG 57.640 38.462 0.00 0.00 0.00 3.61
4011 9339 7.952930 TGATTCTCCTATTATCTCTAGCCTTGT 59.047 37.037 0.00 0.00 0.00 3.16
4012 9340 9.469097 GATTCTCCTATTATCTCTAGCCTTGTA 57.531 37.037 0.00 0.00 0.00 2.41
4025 9353 9.373450 TCTCTAGCCTTGTATAAATTGATCTCT 57.627 33.333 0.00 0.00 0.00 3.10
4030 9358 9.373450 AGCCTTGTATAAATTGATCTCTAGAGA 57.627 33.333 24.36 24.36 42.37 3.10
4047 9375 9.575868 TCTCTAGAGATATTGTAGGGTTAGTTG 57.424 37.037 18.76 0.00 31.41 3.16
4048 9376 8.707796 TCTAGAGATATTGTAGGGTTAGTTGG 57.292 38.462 0.00 0.00 0.00 3.77
4049 9377 6.176014 AGAGATATTGTAGGGTTAGTTGGC 57.824 41.667 0.00 0.00 0.00 4.52
4050 9378 5.905913 AGAGATATTGTAGGGTTAGTTGGCT 59.094 40.000 0.00 0.00 0.00 4.75
4051 9379 6.387220 AGAGATATTGTAGGGTTAGTTGGCTT 59.613 38.462 0.00 0.00 0.00 4.35
4052 9380 6.357367 AGATATTGTAGGGTTAGTTGGCTTG 58.643 40.000 0.00 0.00 0.00 4.01
4053 9381 3.868619 TTGTAGGGTTAGTTGGCTTGT 57.131 42.857 0.00 0.00 0.00 3.16
4054 9382 3.412237 TGTAGGGTTAGTTGGCTTGTC 57.588 47.619 0.00 0.00 0.00 3.18
4055 9383 2.706723 TGTAGGGTTAGTTGGCTTGTCA 59.293 45.455 0.00 0.00 0.00 3.58
4056 9384 2.271944 AGGGTTAGTTGGCTTGTCAC 57.728 50.000 0.00 0.00 0.00 3.67
4057 9385 0.872388 GGGTTAGTTGGCTTGTCACG 59.128 55.000 0.00 0.00 0.00 4.35
4058 9386 0.237498 GGTTAGTTGGCTTGTCACGC 59.763 55.000 0.00 0.00 0.00 5.34
4059 9387 0.941542 GTTAGTTGGCTTGTCACGCA 59.058 50.000 3.49 0.00 0.00 5.24
4060 9388 1.332375 GTTAGTTGGCTTGTCACGCAA 59.668 47.619 3.49 0.00 35.50 4.85
4068 9396 4.118480 TGTCACGCAAGACACCAC 57.882 55.556 4.26 0.00 43.18 4.16
4069 9397 1.522806 TGTCACGCAAGACACCACC 60.523 57.895 4.26 0.00 43.18 4.61
4070 9398 1.227556 GTCACGCAAGACACCACCT 60.228 57.895 0.97 0.00 43.62 4.00
4071 9399 1.227527 TCACGCAAGACACCACCTG 60.228 57.895 0.00 0.00 43.62 4.00
4072 9400 1.523711 CACGCAAGACACCACCTGT 60.524 57.895 0.00 0.00 43.62 4.00
4073 9401 0.249699 CACGCAAGACACCACCTGTA 60.250 55.000 0.00 0.00 43.62 2.74
4074 9402 0.685097 ACGCAAGACACCACCTGTAT 59.315 50.000 0.00 0.00 43.62 2.29
4075 9403 1.897133 ACGCAAGACACCACCTGTATA 59.103 47.619 0.00 0.00 43.62 1.47
4076 9404 2.500098 ACGCAAGACACCACCTGTATAT 59.500 45.455 0.00 0.00 43.62 0.86
4077 9405 3.702548 ACGCAAGACACCACCTGTATATA 59.297 43.478 0.00 0.00 43.62 0.86
4078 9406 4.344102 ACGCAAGACACCACCTGTATATAT 59.656 41.667 0.00 0.00 43.62 0.86
4079 9407 5.163343 ACGCAAGACACCACCTGTATATATT 60.163 40.000 0.00 0.00 43.62 1.28
4080 9408 5.177511 CGCAAGACACCACCTGTATATATTG 59.822 44.000 0.00 0.00 43.02 1.90
4081 9409 6.055588 GCAAGACACCACCTGTATATATTGT 58.944 40.000 0.00 0.00 31.03 2.71
4082 9410 7.214381 GCAAGACACCACCTGTATATATTGTA 58.786 38.462 0.00 0.00 31.03 2.41
4083 9411 7.713507 GCAAGACACCACCTGTATATATTGTAA 59.286 37.037 0.00 0.00 31.03 2.41
4084 9412 9.042008 CAAGACACCACCTGTATATATTGTAAC 57.958 37.037 0.00 0.00 31.03 2.50
4085 9413 7.732996 AGACACCACCTGTATATATTGTAACC 58.267 38.462 0.00 0.00 31.03 2.85
4086 9414 6.518493 ACACCACCTGTATATATTGTAACCG 58.482 40.000 0.00 0.00 0.00 4.44
4087 9415 6.324512 ACACCACCTGTATATATTGTAACCGA 59.675 38.462 0.00 0.00 0.00 4.69
4088 9416 6.643770 CACCACCTGTATATATTGTAACCGAC 59.356 42.308 0.00 0.00 0.00 4.79
4089 9417 6.552350 ACCACCTGTATATATTGTAACCGACT 59.448 38.462 0.00 0.00 0.00 4.18
4090 9418 7.088905 CCACCTGTATATATTGTAACCGACTC 58.911 42.308 0.00 0.00 0.00 3.36
4091 9419 7.088905 CACCTGTATATATTGTAACCGACTCC 58.911 42.308 0.00 0.00 0.00 3.85
4092 9420 6.072286 ACCTGTATATATTGTAACCGACTCCG 60.072 42.308 0.00 0.00 0.00 4.63
4093 9421 6.149973 CCTGTATATATTGTAACCGACTCCGA 59.850 42.308 0.00 0.00 38.22 4.55
4094 9422 7.148120 CCTGTATATATTGTAACCGACTCCGAT 60.148 40.741 0.00 0.00 38.22 4.18
4095 9423 7.532571 TGTATATATTGTAACCGACTCCGATG 58.467 38.462 0.00 0.00 38.22 3.84
4096 9424 2.596904 ATTGTAACCGACTCCGATGG 57.403 50.000 0.00 0.00 38.22 3.51
4097 9425 1.548081 TTGTAACCGACTCCGATGGA 58.452 50.000 0.00 0.00 38.22 3.41
4098 9426 1.548081 TGTAACCGACTCCGATGGAA 58.452 50.000 0.00 0.00 38.22 3.53
4099 9427 2.104967 TGTAACCGACTCCGATGGAAT 58.895 47.619 0.00 0.00 38.22 3.01
4100 9428 3.289836 TGTAACCGACTCCGATGGAATA 58.710 45.455 0.00 0.00 38.22 1.75
4101 9429 2.884894 AACCGACTCCGATGGAATAC 57.115 50.000 0.00 0.00 38.22 1.89
4102 9430 1.771565 ACCGACTCCGATGGAATACA 58.228 50.000 0.00 0.00 38.22 2.29
4103 9431 2.104967 ACCGACTCCGATGGAATACAA 58.895 47.619 0.00 0.00 38.22 2.41
4104 9432 2.698797 ACCGACTCCGATGGAATACAAT 59.301 45.455 0.00 0.00 38.22 2.71
4105 9433 3.134081 ACCGACTCCGATGGAATACAATT 59.866 43.478 0.00 0.00 38.22 2.32
4106 9434 3.494626 CCGACTCCGATGGAATACAATTG 59.505 47.826 3.24 3.24 38.22 2.32
4107 9435 4.368315 CGACTCCGATGGAATACAATTGA 58.632 43.478 13.59 0.00 38.22 2.57
4108 9436 4.445718 CGACTCCGATGGAATACAATTGAG 59.554 45.833 13.59 0.00 38.22 3.02
4109 9437 5.359194 ACTCCGATGGAATACAATTGAGT 57.641 39.130 13.59 0.00 32.55 3.41
4110 9438 5.745227 ACTCCGATGGAATACAATTGAGTT 58.255 37.500 13.59 6.12 33.15 3.01
4111 9439 5.586243 ACTCCGATGGAATACAATTGAGTTG 59.414 40.000 13.59 0.00 43.64 3.16
4112 9440 4.335315 TCCGATGGAATACAATTGAGTTGC 59.665 41.667 13.59 11.57 41.69 4.17
4113 9441 4.096231 CCGATGGAATACAATTGAGTTGCA 59.904 41.667 13.59 16.48 41.69 4.08
4114 9442 5.221106 CCGATGGAATACAATTGAGTTGCAT 60.221 40.000 23.21 23.21 41.69 3.96
4115 9443 5.911280 CGATGGAATACAATTGAGTTGCATC 59.089 40.000 29.23 29.23 42.39 3.91
4116 9444 5.581126 TGGAATACAATTGAGTTGCATCC 57.419 39.130 13.59 9.70 41.69 3.51
4117 9445 5.263599 TGGAATACAATTGAGTTGCATCCT 58.736 37.500 13.59 0.00 41.69 3.24
4118 9446 6.422333 TGGAATACAATTGAGTTGCATCCTA 58.578 36.000 13.59 0.00 41.69 2.94
4119 9447 7.062322 TGGAATACAATTGAGTTGCATCCTAT 58.938 34.615 13.59 0.00 41.69 2.57
4120 9448 8.217111 TGGAATACAATTGAGTTGCATCCTATA 58.783 33.333 13.59 0.00 41.69 1.31
4121 9449 8.725148 GGAATACAATTGAGTTGCATCCTATAG 58.275 37.037 13.59 0.00 41.69 1.31
4122 9450 9.277783 GAATACAATTGAGTTGCATCCTATAGT 57.722 33.333 13.59 0.00 41.69 2.12
4123 9451 8.839310 ATACAATTGAGTTGCATCCTATAGTC 57.161 34.615 13.59 0.00 41.69 2.59
4124 9452 6.893583 ACAATTGAGTTGCATCCTATAGTCT 58.106 36.000 13.59 0.00 41.69 3.24
4125 9453 7.341805 ACAATTGAGTTGCATCCTATAGTCTT 58.658 34.615 13.59 0.00 41.69 3.01
4126 9454 7.831193 ACAATTGAGTTGCATCCTATAGTCTTT 59.169 33.333 13.59 0.00 41.69 2.52
4127 9455 8.680903 CAATTGAGTTGCATCCTATAGTCTTTT 58.319 33.333 0.00 0.00 0.00 2.27
4128 9456 9.905713 AATTGAGTTGCATCCTATAGTCTTTTA 57.094 29.630 0.00 0.00 0.00 1.52
4129 9457 8.718102 TTGAGTTGCATCCTATAGTCTTTTAC 57.282 34.615 0.00 0.00 0.00 2.01
4130 9458 7.847096 TGAGTTGCATCCTATAGTCTTTTACA 58.153 34.615 0.00 0.00 0.00 2.41
4131 9459 8.486210 TGAGTTGCATCCTATAGTCTTTTACAT 58.514 33.333 0.00 0.00 0.00 2.29
4132 9460 8.668510 AGTTGCATCCTATAGTCTTTTACATG 57.331 34.615 0.00 0.00 0.00 3.21
4133 9461 7.716998 AGTTGCATCCTATAGTCTTTTACATGG 59.283 37.037 0.00 0.00 0.00 3.66
4134 9462 7.136822 TGCATCCTATAGTCTTTTACATGGT 57.863 36.000 0.00 0.00 0.00 3.55
4135 9463 8.257602 TGCATCCTATAGTCTTTTACATGGTA 57.742 34.615 0.00 0.00 0.00 3.25
4136 9464 8.880244 TGCATCCTATAGTCTTTTACATGGTAT 58.120 33.333 0.00 0.00 0.00 2.73
4137 9465 9.372369 GCATCCTATAGTCTTTTACATGGTATC 57.628 37.037 0.00 0.00 0.00 2.24
4140 9468 9.656323 TCCTATAGTCTTTTACATGGTATCAGT 57.344 33.333 0.00 0.00 0.00 3.41
4146 9474 9.220767 AGTCTTTTACATGGTATCAGTTTTCTC 57.779 33.333 0.00 0.00 0.00 2.87
4147 9475 8.451748 GTCTTTTACATGGTATCAGTTTTCTCC 58.548 37.037 0.00 0.00 0.00 3.71
4148 9476 7.610305 TCTTTTACATGGTATCAGTTTTCTCCC 59.390 37.037 0.00 0.00 0.00 4.30
4149 9477 3.873910 ACATGGTATCAGTTTTCTCCCG 58.126 45.455 0.00 0.00 0.00 5.14
4150 9478 3.517901 ACATGGTATCAGTTTTCTCCCGA 59.482 43.478 0.00 0.00 0.00 5.14
4151 9479 4.164221 ACATGGTATCAGTTTTCTCCCGAT 59.836 41.667 0.00 0.00 0.00 4.18
4152 9480 4.402056 TGGTATCAGTTTTCTCCCGATC 57.598 45.455 0.00 0.00 0.00 3.69
4153 9481 4.030913 TGGTATCAGTTTTCTCCCGATCT 58.969 43.478 0.00 0.00 0.00 2.75
4154 9482 4.099573 TGGTATCAGTTTTCTCCCGATCTC 59.900 45.833 0.00 0.00 0.00 2.75
4155 9483 4.342665 GGTATCAGTTTTCTCCCGATCTCT 59.657 45.833 0.00 0.00 0.00 3.10
4156 9484 4.664150 ATCAGTTTTCTCCCGATCTCTC 57.336 45.455 0.00 0.00 0.00 3.20
4157 9485 3.702792 TCAGTTTTCTCCCGATCTCTCT 58.297 45.455 0.00 0.00 0.00 3.10
4158 9486 3.697045 TCAGTTTTCTCCCGATCTCTCTC 59.303 47.826 0.00 0.00 0.00 3.20
4159 9487 2.685897 AGTTTTCTCCCGATCTCTCTCG 59.314 50.000 0.00 0.00 38.37 4.04
4160 9488 1.025812 TTTCTCCCGATCTCTCTCGC 58.974 55.000 0.00 0.00 37.33 5.03
4161 9489 0.181587 TTCTCCCGATCTCTCTCGCT 59.818 55.000 0.00 0.00 37.33 4.93
4162 9490 0.181587 TCTCCCGATCTCTCTCGCTT 59.818 55.000 0.00 0.00 37.33 4.68
4163 9491 0.591170 CTCCCGATCTCTCTCGCTTC 59.409 60.000 0.00 0.00 37.33 3.86
4164 9492 0.820074 TCCCGATCTCTCTCGCTTCC 60.820 60.000 0.00 0.00 37.33 3.46
4165 9493 1.281353 CCGATCTCTCTCGCTTCCG 59.719 63.158 0.00 0.00 37.33 4.30
4166 9494 1.369930 CGATCTCTCTCGCTTCCGC 60.370 63.158 0.00 0.00 0.00 5.54
4167 9495 1.781025 CGATCTCTCTCGCTTCCGCT 61.781 60.000 0.00 0.00 0.00 5.52
4168 9496 0.040425 GATCTCTCTCGCTTCCGCTC 60.040 60.000 0.00 0.00 0.00 5.03
4169 9497 0.465460 ATCTCTCTCGCTTCCGCTCT 60.465 55.000 0.00 0.00 0.00 4.09
4170 9498 0.178301 TCTCTCTCGCTTCCGCTCTA 59.822 55.000 0.00 0.00 0.00 2.43
4171 9499 0.586319 CTCTCTCGCTTCCGCTCTAG 59.414 60.000 0.00 0.00 0.00 2.43
4172 9500 0.816018 TCTCTCGCTTCCGCTCTAGG 60.816 60.000 0.00 0.00 0.00 3.02
4173 9501 2.026879 CTCGCTTCCGCTCTAGGC 59.973 66.667 0.00 0.00 37.64 3.93
4174 9502 3.492311 CTCGCTTCCGCTCTAGGCC 62.492 68.421 0.00 0.00 37.74 5.19
4175 9503 4.933064 CGCTTCCGCTCTAGGCCG 62.933 72.222 0.00 0.00 37.74 6.13
4177 9505 4.593864 CTTCCGCTCTAGGCCGCC 62.594 72.222 0.00 0.00 37.74 6.13
4210 9538 3.902086 GCCGTCGCCCCTCTCTAC 61.902 72.222 0.00 0.00 0.00 2.59
4211 9539 3.217743 CCGTCGCCCCTCTCTACC 61.218 72.222 0.00 0.00 0.00 3.18
4212 9540 2.124236 CGTCGCCCCTCTCTACCT 60.124 66.667 0.00 0.00 0.00 3.08
4213 9541 2.482333 CGTCGCCCCTCTCTACCTG 61.482 68.421 0.00 0.00 0.00 4.00
4214 9542 2.442272 TCGCCCCTCTCTACCTGC 60.442 66.667 0.00 0.00 0.00 4.85
4215 9543 3.541713 CGCCCCTCTCTACCTGCC 61.542 72.222 0.00 0.00 0.00 4.85
4216 9544 3.541713 GCCCCTCTCTACCTGCCG 61.542 72.222 0.00 0.00 0.00 5.69
4217 9545 3.541713 CCCCTCTCTACCTGCCGC 61.542 72.222 0.00 0.00 0.00 6.53
4218 9546 3.541713 CCCTCTCTACCTGCCGCC 61.542 72.222 0.00 0.00 0.00 6.13
4219 9547 3.905678 CCTCTCTACCTGCCGCCG 61.906 72.222 0.00 0.00 0.00 6.46
4220 9548 4.577246 CTCTCTACCTGCCGCCGC 62.577 72.222 0.00 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.834263 GCAGCCTCCTCCTTCTTCTTA 59.166 52.381 0.00 0.00 0.00 2.10
94 98 1.482593 GCAGCAGCTAGTTAAGGGAGA 59.517 52.381 0.00 0.00 37.91 3.71
297 1659 5.817816 ACCTTATATTTTGAAGCGGAGACTG 59.182 40.000 0.00 0.00 0.00 3.51
298 1660 5.817816 CACCTTATATTTTGAAGCGGAGACT 59.182 40.000 0.00 0.00 0.00 3.24
299 1661 5.585047 ACACCTTATATTTTGAAGCGGAGAC 59.415 40.000 0.00 0.00 0.00 3.36
300 1662 5.741011 ACACCTTATATTTTGAAGCGGAGA 58.259 37.500 0.00 0.00 0.00 3.71
301 1663 6.761714 AGTACACCTTATATTTTGAAGCGGAG 59.238 38.462 0.00 0.00 0.00 4.63
302 1664 6.537301 CAGTACACCTTATATTTTGAAGCGGA 59.463 38.462 0.00 0.00 0.00 5.54
303 1665 6.315393 ACAGTACACCTTATATTTTGAAGCGG 59.685 38.462 0.00 0.00 0.00 5.52
304 1666 7.303634 ACAGTACACCTTATATTTTGAAGCG 57.696 36.000 0.00 0.00 0.00 4.68
305 1667 9.556030 GAAACAGTACACCTTATATTTTGAAGC 57.444 33.333 0.00 0.00 0.00 3.86
308 1670 9.787435 ACAGAAACAGTACACCTTATATTTTGA 57.213 29.630 0.00 0.00 0.00 2.69
310 1672 9.227777 GGACAGAAACAGTACACCTTATATTTT 57.772 33.333 0.00 0.00 0.00 1.82
311 1673 7.827729 GGGACAGAAACAGTACACCTTATATTT 59.172 37.037 0.00 0.00 0.00 1.40
312 1674 7.182206 AGGGACAGAAACAGTACACCTTATATT 59.818 37.037 0.00 0.00 0.00 1.28
313 1675 6.672657 AGGGACAGAAACAGTACACCTTATAT 59.327 38.462 0.00 0.00 0.00 0.86
314 1676 6.021030 AGGGACAGAAACAGTACACCTTATA 58.979 40.000 0.00 0.00 0.00 0.98
315 1677 4.844655 AGGGACAGAAACAGTACACCTTAT 59.155 41.667 0.00 0.00 0.00 1.73
354 1745 8.667463 CAAAACTGAAGGTCAAACATCAAAAAT 58.333 29.630 0.00 0.00 0.00 1.82
359 1750 4.159321 TGCAAAACTGAAGGTCAAACATCA 59.841 37.500 0.00 0.00 0.00 3.07
456 1857 4.878968 TGGTAGAGAGAGAGAGAGAGAGA 58.121 47.826 0.00 0.00 0.00 3.10
457 1858 4.651503 ACTGGTAGAGAGAGAGAGAGAGAG 59.348 50.000 0.00 0.00 0.00 3.20
458 1859 4.620723 ACTGGTAGAGAGAGAGAGAGAGA 58.379 47.826 0.00 0.00 0.00 3.10
459 1860 5.359194 AACTGGTAGAGAGAGAGAGAGAG 57.641 47.826 0.00 0.00 0.00 3.20
460 1861 4.142026 CGAACTGGTAGAGAGAGAGAGAGA 60.142 50.000 0.00 0.00 0.00 3.10
461 1862 4.119862 CGAACTGGTAGAGAGAGAGAGAG 58.880 52.174 0.00 0.00 0.00 3.20
462 1863 3.118555 CCGAACTGGTAGAGAGAGAGAGA 60.119 52.174 0.00 0.00 0.00 3.10
463 1864 3.202906 CCGAACTGGTAGAGAGAGAGAG 58.797 54.545 0.00 0.00 0.00 3.20
464 1865 3.269538 CCGAACTGGTAGAGAGAGAGA 57.730 52.381 0.00 0.00 0.00 3.10
503 1906 5.105797 GCATTCATGTTCCAACCTATTCACA 60.106 40.000 0.00 0.00 0.00 3.58
504 1907 5.105797 TGCATTCATGTTCCAACCTATTCAC 60.106 40.000 0.00 0.00 0.00 3.18
527 1931 6.286758 AGGATGCAGTCTATTACAGTGAATG 58.713 40.000 0.00 0.00 0.00 2.67
541 1945 2.496899 TGGAAGGAAAGGATGCAGTC 57.503 50.000 0.00 0.00 0.00 3.51
551 1958 3.851976 TCTTGGGAGATCATGGAAGGAAA 59.148 43.478 0.00 0.00 0.00 3.13
641 4645 4.159244 AGCGGTAAATTTGTATGCCCTA 57.841 40.909 0.00 0.00 0.00 3.53
696 4700 2.414658 TTTCCCTGGCCGTTGGGTAC 62.415 60.000 22.59 0.00 43.74 3.34
697 4701 1.717038 TTTTCCCTGGCCGTTGGGTA 61.717 55.000 22.59 13.92 43.74 3.69
746 4750 2.039879 TCCTTCCTTCCTTTTTCCGGAG 59.960 50.000 3.34 0.00 0.00 4.63
770 4774 5.163864 CCTTTCATTCAATCACACGATCGAA 60.164 40.000 24.34 2.75 29.33 3.71
774 4778 5.707298 AGTTCCTTTCATTCAATCACACGAT 59.293 36.000 0.00 0.00 0.00 3.73
775 4779 5.063204 AGTTCCTTTCATTCAATCACACGA 58.937 37.500 0.00 0.00 0.00 4.35
776 4780 5.362556 AGTTCCTTTCATTCAATCACACG 57.637 39.130 0.00 0.00 0.00 4.49
777 4781 9.346725 GATTTAGTTCCTTTCATTCAATCACAC 57.653 33.333 0.00 0.00 0.00 3.82
794 4814 5.582665 AGCAGAATCTCGTTGGATTTAGTTC 59.417 40.000 0.00 0.00 36.24 3.01
860 4880 4.854361 TGTTCTCTCGTACGTCTGTATC 57.146 45.455 16.05 3.04 32.11 2.24
861 4881 5.814764 ATTGTTCTCTCGTACGTCTGTAT 57.185 39.130 16.05 0.00 32.11 2.29
862 4882 6.726258 TTATTGTTCTCTCGTACGTCTGTA 57.274 37.500 16.05 0.00 0.00 2.74
863 4883 5.618056 TTATTGTTCTCTCGTACGTCTGT 57.382 39.130 16.05 0.00 0.00 3.41
864 4884 5.285607 GGTTTATTGTTCTCTCGTACGTCTG 59.714 44.000 16.05 7.21 0.00 3.51
865 4885 5.048504 TGGTTTATTGTTCTCTCGTACGTCT 60.049 40.000 16.05 0.00 0.00 4.18
866 4886 5.156355 TGGTTTATTGTTCTCTCGTACGTC 58.844 41.667 16.05 1.43 0.00 4.34
867 4887 5.125100 TGGTTTATTGTTCTCTCGTACGT 57.875 39.130 16.05 0.00 0.00 3.57
868 4888 4.031426 GCTGGTTTATTGTTCTCTCGTACG 59.969 45.833 9.53 9.53 0.00 3.67
869 4889 4.927425 TGCTGGTTTATTGTTCTCTCGTAC 59.073 41.667 0.00 0.00 0.00 3.67
870 4890 5.142061 TGCTGGTTTATTGTTCTCTCGTA 57.858 39.130 0.00 0.00 0.00 3.43
871 4891 3.997021 CTGCTGGTTTATTGTTCTCTCGT 59.003 43.478 0.00 0.00 0.00 4.18
1021 5089 3.071206 ACCAGAGCCGAGCACGAT 61.071 61.111 4.70 0.00 42.66 3.73
1035 5103 0.994247 ATGAGCATGGGAACTCACCA 59.006 50.000 3.26 0.00 45.19 4.17
1061 5133 0.824109 TAGATGTGGACCGAAGCTGG 59.176 55.000 0.00 0.00 0.00 4.85
1088 5160 1.967066 AGAGCACCATAGATTCCTCCG 59.033 52.381 0.00 0.00 0.00 4.63
1203 5282 3.181436 ACCCAGCGAGTATAGGTAAGCTA 60.181 47.826 0.00 0.00 33.24 3.32
1204 5283 2.240279 CCCAGCGAGTATAGGTAAGCT 58.760 52.381 0.00 0.00 35.06 3.74
1205 5284 1.962100 ACCCAGCGAGTATAGGTAAGC 59.038 52.381 0.00 0.00 0.00 3.09
1206 5285 2.296471 CCACCCAGCGAGTATAGGTAAG 59.704 54.545 0.00 0.00 0.00 2.34
1207 5286 2.091720 TCCACCCAGCGAGTATAGGTAA 60.092 50.000 0.00 0.00 0.00 2.85
1209 5288 0.260816 TCCACCCAGCGAGTATAGGT 59.739 55.000 0.00 0.00 0.00 3.08
1210 5289 1.633774 ATCCACCCAGCGAGTATAGG 58.366 55.000 0.00 0.00 0.00 2.57
1211 5290 3.154710 TGTATCCACCCAGCGAGTATAG 58.845 50.000 0.00 0.00 0.00 1.31
1212 5291 3.232720 TGTATCCACCCAGCGAGTATA 57.767 47.619 0.00 0.00 0.00 1.47
1213 5292 2.082140 TGTATCCACCCAGCGAGTAT 57.918 50.000 0.00 0.00 0.00 2.12
1283 5398 5.156355 CGTATGGCAGATTGGATTATTTGC 58.844 41.667 0.00 0.00 35.52 3.68
1304 5650 2.046604 GCGTTCCCCTAAAGGCGT 60.047 61.111 0.00 0.00 31.29 5.68
1305 5651 2.822701 GGCGTTCCCCTAAAGGCG 60.823 66.667 0.00 0.00 40.12 5.52
1334 5684 4.391830 TGCAATCCGTTAGTAAGCTTTGAG 59.608 41.667 3.20 0.00 0.00 3.02
1335 5685 4.320023 TGCAATCCGTTAGTAAGCTTTGA 58.680 39.130 3.20 0.00 0.00 2.69
1342 5692 7.259161 ACAAAGTTTTTGCAATCCGTTAGTAA 58.741 30.769 0.00 0.00 0.00 2.24
1403 5761 1.077089 GCGTCGCCTCCTGTAAGAAC 61.077 60.000 5.75 0.00 34.07 3.01
1475 5837 3.266772 TGGAGGCAAGGTAAGTGATCATT 59.733 43.478 0.00 0.00 0.00 2.57
1476 5838 2.846206 TGGAGGCAAGGTAAGTGATCAT 59.154 45.455 0.00 0.00 0.00 2.45
1477 5839 2.265367 TGGAGGCAAGGTAAGTGATCA 58.735 47.619 0.00 0.00 0.00 2.92
1478 5840 3.209410 CATGGAGGCAAGGTAAGTGATC 58.791 50.000 0.00 0.00 0.00 2.92
1497 5860 2.505819 ACCCGACTGAGAATAAAGGCAT 59.494 45.455 0.00 0.00 0.00 4.40
1528 5895 3.460672 ATGGCTCGGCGTGTATGGG 62.461 63.158 6.85 0.00 0.00 4.00
1529 5896 2.108976 ATGGCTCGGCGTGTATGG 59.891 61.111 6.85 0.00 0.00 2.74
1530 5897 2.246739 CCATGGCTCGGCGTGTATG 61.247 63.158 6.85 13.03 0.00 2.39
1550 5917 1.529226 TACAAAAGGTGTCATGGCCG 58.471 50.000 0.00 0.00 41.98 6.13
1552 5919 5.163513 CAAAGATACAAAAGGTGTCATGGC 58.836 41.667 0.00 0.00 41.98 4.40
1553 5920 6.331369 ACAAAGATACAAAAGGTGTCATGG 57.669 37.500 0.00 0.00 41.98 3.66
1554 5921 7.706179 ACAAACAAAGATACAAAAGGTGTCATG 59.294 33.333 0.00 0.00 41.98 3.07
1555 5922 7.781056 ACAAACAAAGATACAAAAGGTGTCAT 58.219 30.769 0.00 0.00 41.98 3.06
1621 5992 1.202302 ACTGATCGCTACCGTCATGTG 60.202 52.381 0.00 0.00 35.54 3.21
1625 5996 0.172578 CCAACTGATCGCTACCGTCA 59.827 55.000 0.00 0.00 35.54 4.35
1646 6017 4.277476 TCCACAACAAACAAACCTGAGAT 58.723 39.130 0.00 0.00 0.00 2.75
1661 6032 4.623595 ACGAAAAACAAACACATCCACAAC 59.376 37.500 0.00 0.00 0.00 3.32
1707 6088 2.664085 GCCGCGATTTTAGATCTAGAGC 59.336 50.000 8.23 0.00 0.00 4.09
1728 6110 1.007336 ACGTTTAGCGGAGTCAAGCG 61.007 55.000 4.51 0.83 46.52 4.68
1746 6128 3.614616 CCTGATACTGTCGAGCTGAAAAC 59.385 47.826 0.00 0.00 0.00 2.43
1782 6164 4.796231 CTCTGCGGCGTACGGCTT 62.796 66.667 34.57 0.00 44.51 4.35
1902 6292 7.308169 GGCATGATGAAACGATAGATCAAATCA 60.308 37.037 0.00 0.00 38.50 2.57
1943 6336 8.306761 CAGAGGGCCAAAATCATATAATTAACC 58.693 37.037 6.18 0.00 0.00 2.85
1944 6337 8.306761 CCAGAGGGCCAAAATCATATAATTAAC 58.693 37.037 6.18 0.00 0.00 2.01
1946 6339 7.534852 ACCAGAGGGCCAAAATCATATAATTA 58.465 34.615 6.18 0.00 37.90 1.40
1947 6340 6.384603 ACCAGAGGGCCAAAATCATATAATT 58.615 36.000 6.18 0.00 37.90 1.40
1948 6341 5.969086 ACCAGAGGGCCAAAATCATATAAT 58.031 37.500 6.18 0.00 37.90 1.28
2217 6672 4.210331 ACTTCAAAAGCAGAATGACCTGT 58.790 39.130 0.00 0.00 39.69 4.00
2313 6775 0.249120 TCGTCACCCACATCATGTCC 59.751 55.000 0.00 0.00 0.00 4.02
2352 6814 1.149987 GTTTACCCACGACATCGCAA 58.850 50.000 0.14 0.00 44.43 4.85
2412 6875 4.443394 GTGCAACATCAGCAAGAAAGAAAG 59.557 41.667 0.00 0.00 44.64 2.62
2413 6876 4.142204 TGTGCAACATCAGCAAGAAAGAAA 60.142 37.500 0.00 0.00 45.67 2.52
2416 6879 3.358707 TGTGCAACATCAGCAAGAAAG 57.641 42.857 0.00 0.00 45.67 2.62
2462 6928 8.969260 ATGTTCTTCTTCATGCATGTAAGATA 57.031 30.769 27.32 22.11 30.16 1.98
2463 6929 7.876936 ATGTTCTTCTTCATGCATGTAAGAT 57.123 32.000 27.32 17.46 30.16 2.40
2464 6930 8.969260 ATATGTTCTTCTTCATGCATGTAAGA 57.031 30.769 25.43 25.20 0.00 2.10
2467 6933 9.783081 ACATATATGTTCTTCTTCATGCATGTA 57.217 29.630 25.43 15.93 37.90 2.29
2469 6935 8.235226 GGACATATATGTTCTTCTTCATGCATG 58.765 37.037 21.07 21.07 41.95 4.06
2470 6936 7.940688 TGGACATATATGTTCTTCTTCATGCAT 59.059 33.333 22.12 0.00 41.95 3.96
2471 6937 7.281841 TGGACATATATGTTCTTCTTCATGCA 58.718 34.615 22.12 4.60 41.95 3.96
2472 6938 7.734924 TGGACATATATGTTCTTCTTCATGC 57.265 36.000 22.12 5.25 41.95 4.06
2520 7005 2.278857 CGGTCGATCCTTCCAGCG 60.279 66.667 0.00 0.00 0.00 5.18
2625 7110 4.220602 CCATCCAAAAGTACCAGAAAAGGG 59.779 45.833 0.00 0.00 0.00 3.95
2794 7831 5.859495 AGCTCCAGAAAGCAAGGTATATAC 58.141 41.667 4.14 4.14 45.00 1.47
2795 7832 6.553476 TGTAGCTCCAGAAAGCAAGGTATATA 59.447 38.462 0.00 0.00 45.00 0.86
2796 7833 5.366768 TGTAGCTCCAGAAAGCAAGGTATAT 59.633 40.000 0.00 0.00 45.00 0.86
2797 7834 4.714802 TGTAGCTCCAGAAAGCAAGGTATA 59.285 41.667 0.00 0.00 45.00 1.47
2798 7835 3.519510 TGTAGCTCCAGAAAGCAAGGTAT 59.480 43.478 0.00 0.00 45.00 2.73
2799 7836 2.903784 TGTAGCTCCAGAAAGCAAGGTA 59.096 45.455 0.00 0.00 45.00 3.08
2853 7899 1.133668 AGCCTTGACCCCTGCATATTC 60.134 52.381 0.00 0.00 0.00 1.75
3040 8173 0.546122 ACTTGCCTGGCGAATATCCA 59.454 50.000 14.98 0.00 0.00 3.41
3041 8174 1.230324 GACTTGCCTGGCGAATATCC 58.770 55.000 14.98 0.00 0.00 2.59
3042 8175 0.861837 CGACTTGCCTGGCGAATATC 59.138 55.000 14.98 9.02 0.00 1.63
3070 8217 4.941263 ACGCCAGTAAAGAATTGCATAAGA 59.059 37.500 0.00 0.00 0.00 2.10
3087 8234 1.155889 TCATGTAAGCAACACGCCAG 58.844 50.000 0.00 0.00 42.09 4.85
3092 8243 3.747099 AGCGAATCATGTAAGCAACAC 57.253 42.857 0.00 0.00 42.09 3.32
3115 8270 1.586154 CGGTGGTTGATGCAGAACCC 61.586 60.000 21.88 14.99 42.05 4.11
3359 8538 7.038017 ACCATTTGAAGAGATACAAGAGGAGAA 60.038 37.037 0.00 0.00 0.00 2.87
3382 8561 2.004808 CTCGGCTACTGATGCGACCA 62.005 60.000 0.00 0.00 0.00 4.02
3438 8617 7.315142 GGATCATCATTGTTTGCAAAGTTAGA 58.685 34.615 13.26 9.26 38.21 2.10
3444 8623 5.486735 AAGGGATCATCATTGTTTGCAAA 57.513 34.783 8.05 8.05 38.21 3.68
3458 8637 6.095860 CAGAGCACATTGATAAAAAGGGATCA 59.904 38.462 0.00 0.00 0.00 2.92
3459 8638 6.096001 ACAGAGCACATTGATAAAAAGGGATC 59.904 38.462 0.00 0.00 0.00 3.36
3460 8639 5.954150 ACAGAGCACATTGATAAAAAGGGAT 59.046 36.000 0.00 0.00 0.00 3.85
3461 8640 5.324409 ACAGAGCACATTGATAAAAAGGGA 58.676 37.500 0.00 0.00 0.00 4.20
3465 8644 8.409371 TGTGTAAACAGAGCACATTGATAAAAA 58.591 29.630 0.00 0.00 38.09 1.94
3473 8654 8.413229 ACTTAATTTGTGTAAACAGAGCACATT 58.587 29.630 0.00 0.00 41.86 2.71
3477 8658 7.147983 ACCAACTTAATTTGTGTAAACAGAGCA 60.148 33.333 5.01 0.00 0.00 4.26
3495 8676 3.449018 TCCAAAGCAGCAAAACCAACTTA 59.551 39.130 0.00 0.00 0.00 2.24
3541 8723 2.304092 GATTCTCCTGGAATGCATGCA 58.696 47.619 25.04 25.04 43.90 3.96
3542 8724 2.034305 GTGATTCTCCTGGAATGCATGC 59.966 50.000 11.82 11.82 43.90 4.06
3543 8725 3.284617 TGTGATTCTCCTGGAATGCATG 58.715 45.455 0.00 0.00 43.90 4.06
3544 8726 3.657398 TGTGATTCTCCTGGAATGCAT 57.343 42.857 0.00 0.00 43.90 3.96
3594 8776 0.910088 AGTCCAGGTAGCTTCCACCC 60.910 60.000 12.41 0.00 36.67 4.61
3655 8837 7.325660 AGTTATACAACTCATGCCAGAAATG 57.674 36.000 0.00 0.00 41.25 2.32
3727 8979 6.827727 ACCATGGTATAATCAAGACCACTAC 58.172 40.000 18.10 0.00 45.75 2.73
3957 9285 9.621629 TCCCAATAATTACAAAGATATCACGTT 57.378 29.630 5.32 0.00 0.00 3.99
3958 9286 9.052759 GTCCCAATAATTACAAAGATATCACGT 57.947 33.333 5.32 1.42 0.00 4.49
3959 9287 9.273016 AGTCCCAATAATTACAAAGATATCACG 57.727 33.333 5.32 0.00 0.00 4.35
3965 9293 9.927081 AGAATCAGTCCCAATAATTACAAAGAT 57.073 29.630 0.00 0.00 0.00 2.40
3966 9294 9.396022 GAGAATCAGTCCCAATAATTACAAAGA 57.604 33.333 0.00 0.00 33.17 2.52
3967 9295 8.624776 GGAGAATCAGTCCCAATAATTACAAAG 58.375 37.037 0.00 0.00 36.25 2.77
3968 9296 8.336235 AGGAGAATCAGTCCCAATAATTACAAA 58.664 33.333 0.00 0.00 36.25 2.83
3969 9297 7.872138 AGGAGAATCAGTCCCAATAATTACAA 58.128 34.615 0.00 0.00 36.25 2.41
3970 9298 7.451731 AGGAGAATCAGTCCCAATAATTACA 57.548 36.000 0.00 0.00 36.25 2.41
3975 9303 9.621239 AGATAATAGGAGAATCAGTCCCAATAA 57.379 33.333 0.00 0.00 36.25 1.40
3976 9304 9.261035 GAGATAATAGGAGAATCAGTCCCAATA 57.739 37.037 0.00 0.00 36.25 1.90
3977 9305 7.960861 AGAGATAATAGGAGAATCAGTCCCAAT 59.039 37.037 0.00 0.00 36.25 3.16
3978 9306 7.309091 AGAGATAATAGGAGAATCAGTCCCAA 58.691 38.462 0.00 0.00 36.25 4.12
3979 9307 6.868826 AGAGATAATAGGAGAATCAGTCCCA 58.131 40.000 0.00 0.00 36.25 4.37
3980 9308 7.068226 GCTAGAGATAATAGGAGAATCAGTCCC 59.932 44.444 0.00 0.00 36.25 4.46
3981 9309 7.068226 GGCTAGAGATAATAGGAGAATCAGTCC 59.932 44.444 0.00 0.00 36.25 3.85
3982 9310 7.834181 AGGCTAGAGATAATAGGAGAATCAGTC 59.166 40.741 0.00 0.00 36.25 3.51
3983 9311 7.708624 AGGCTAGAGATAATAGGAGAATCAGT 58.291 38.462 0.00 0.00 36.25 3.41
3984 9312 8.469200 CAAGGCTAGAGATAATAGGAGAATCAG 58.531 40.741 0.00 0.00 36.25 2.90
3985 9313 7.952930 ACAAGGCTAGAGATAATAGGAGAATCA 59.047 37.037 0.00 0.00 36.25 2.57
3986 9314 8.361169 ACAAGGCTAGAGATAATAGGAGAATC 57.639 38.462 0.00 0.00 0.00 2.52
3999 9327 9.373450 AGAGATCAATTTATACAAGGCTAGAGA 57.627 33.333 0.00 0.00 0.00 3.10
4004 9332 9.373450 TCTCTAGAGATCAATTTATACAAGGCT 57.627 33.333 18.76 0.00 31.41 4.58
4015 9343 9.836179 ACCCTACAATATCTCTAGAGATCAATT 57.164 33.333 33.46 25.39 44.37 2.32
4016 9344 9.836179 AACCCTACAATATCTCTAGAGATCAAT 57.164 33.333 33.46 21.73 44.37 2.57
4018 9346 9.967451 CTAACCCTACAATATCTCTAGAGATCA 57.033 37.037 33.46 21.34 44.37 2.92
4019 9347 9.969001 ACTAACCCTACAATATCTCTAGAGATC 57.031 37.037 33.46 0.00 44.37 2.75
4021 9349 9.575868 CAACTAACCCTACAATATCTCTAGAGA 57.424 37.037 24.36 24.36 42.37 3.10
4022 9350 8.798402 CCAACTAACCCTACAATATCTCTAGAG 58.202 40.741 13.98 13.98 0.00 2.43
4023 9351 7.232941 GCCAACTAACCCTACAATATCTCTAGA 59.767 40.741 0.00 0.00 0.00 2.43
4024 9352 7.233757 AGCCAACTAACCCTACAATATCTCTAG 59.766 40.741 0.00 0.00 0.00 2.43
4025 9353 7.073854 AGCCAACTAACCCTACAATATCTCTA 58.926 38.462 0.00 0.00 0.00 2.43
4026 9354 5.905913 AGCCAACTAACCCTACAATATCTCT 59.094 40.000 0.00 0.00 0.00 3.10
4027 9355 6.176014 AGCCAACTAACCCTACAATATCTC 57.824 41.667 0.00 0.00 0.00 2.75
4028 9356 6.069615 ACAAGCCAACTAACCCTACAATATCT 60.070 38.462 0.00 0.00 0.00 1.98
4029 9357 6.120220 ACAAGCCAACTAACCCTACAATATC 58.880 40.000 0.00 0.00 0.00 1.63
4030 9358 6.074698 ACAAGCCAACTAACCCTACAATAT 57.925 37.500 0.00 0.00 0.00 1.28
4031 9359 5.013287 TGACAAGCCAACTAACCCTACAATA 59.987 40.000 0.00 0.00 0.00 1.90
4032 9360 4.202524 TGACAAGCCAACTAACCCTACAAT 60.203 41.667 0.00 0.00 0.00 2.71
4033 9361 3.136809 TGACAAGCCAACTAACCCTACAA 59.863 43.478 0.00 0.00 0.00 2.41
4034 9362 2.706723 TGACAAGCCAACTAACCCTACA 59.293 45.455 0.00 0.00 0.00 2.74
4035 9363 3.072211 GTGACAAGCCAACTAACCCTAC 58.928 50.000 0.00 0.00 0.00 3.18
4036 9364 2.289195 CGTGACAAGCCAACTAACCCTA 60.289 50.000 0.00 0.00 0.00 3.53
4037 9365 1.542547 CGTGACAAGCCAACTAACCCT 60.543 52.381 0.00 0.00 0.00 4.34
4038 9366 0.872388 CGTGACAAGCCAACTAACCC 59.128 55.000 0.00 0.00 0.00 4.11
4039 9367 0.237498 GCGTGACAAGCCAACTAACC 59.763 55.000 1.44 0.00 0.00 2.85
4040 9368 0.941542 TGCGTGACAAGCCAACTAAC 59.058 50.000 10.95 0.00 0.00 2.34
4041 9369 1.669604 TTGCGTGACAAGCCAACTAA 58.330 45.000 10.95 0.00 33.24 2.24
4042 9370 3.388272 TTGCGTGACAAGCCAACTA 57.612 47.368 10.95 0.00 33.24 2.24
4043 9371 4.234019 TTGCGTGACAAGCCAACT 57.766 50.000 10.95 0.00 33.24 3.16
4050 9378 1.092921 GGTGGTGTCTTGCGTGACAA 61.093 55.000 12.20 0.00 46.77 3.18
4051 9379 1.522806 GGTGGTGTCTTGCGTGACA 60.523 57.895 7.39 7.39 43.72 3.58
4052 9380 1.227556 AGGTGGTGTCTTGCGTGAC 60.228 57.895 2.43 2.43 37.47 3.67
4053 9381 1.227527 CAGGTGGTGTCTTGCGTGA 60.228 57.895 0.00 0.00 0.00 4.35
4054 9382 0.249699 TACAGGTGGTGTCTTGCGTG 60.250 55.000 0.00 0.00 40.94 5.34
4055 9383 0.685097 ATACAGGTGGTGTCTTGCGT 59.315 50.000 0.00 0.00 40.94 5.24
4056 9384 2.665649 TATACAGGTGGTGTCTTGCG 57.334 50.000 0.00 0.00 40.94 4.85
4057 9385 6.055588 ACAATATATACAGGTGGTGTCTTGC 58.944 40.000 0.00 0.00 40.94 4.01
4058 9386 9.042008 GTTACAATATATACAGGTGGTGTCTTG 57.958 37.037 0.00 0.00 40.94 3.02
4059 9387 8.208903 GGTTACAATATATACAGGTGGTGTCTT 58.791 37.037 0.00 0.00 40.94 3.01
4060 9388 7.470981 CGGTTACAATATATACAGGTGGTGTCT 60.471 40.741 0.00 0.00 40.94 3.41
4061 9389 6.643770 CGGTTACAATATATACAGGTGGTGTC 59.356 42.308 0.00 0.00 40.94 3.67
4062 9390 6.324512 TCGGTTACAATATATACAGGTGGTGT 59.675 38.462 0.00 0.00 43.86 4.16
4063 9391 6.643770 GTCGGTTACAATATATACAGGTGGTG 59.356 42.308 0.00 0.00 0.00 4.17
4064 9392 6.552350 AGTCGGTTACAATATATACAGGTGGT 59.448 38.462 0.00 0.00 0.00 4.16
4065 9393 6.989659 AGTCGGTTACAATATATACAGGTGG 58.010 40.000 0.00 0.00 0.00 4.61
4066 9394 7.088905 GGAGTCGGTTACAATATATACAGGTG 58.911 42.308 0.00 0.00 0.00 4.00
4067 9395 6.072286 CGGAGTCGGTTACAATATATACAGGT 60.072 42.308 0.00 0.00 0.00 4.00
4068 9396 6.149973 TCGGAGTCGGTTACAATATATACAGG 59.850 42.308 0.00 0.00 36.95 4.00
4069 9397 7.137490 TCGGAGTCGGTTACAATATATACAG 57.863 40.000 0.00 0.00 36.95 2.74
4070 9398 7.362315 CCATCGGAGTCGGTTACAATATATACA 60.362 40.741 0.00 0.00 36.95 2.29
4071 9399 6.971184 CCATCGGAGTCGGTTACAATATATAC 59.029 42.308 0.00 0.00 36.95 1.47
4072 9400 6.885918 TCCATCGGAGTCGGTTACAATATATA 59.114 38.462 0.00 0.00 36.95 0.86
4073 9401 5.713389 TCCATCGGAGTCGGTTACAATATAT 59.287 40.000 0.00 0.00 36.95 0.86
4074 9402 5.072055 TCCATCGGAGTCGGTTACAATATA 58.928 41.667 0.00 0.00 36.95 0.86
4075 9403 3.893200 TCCATCGGAGTCGGTTACAATAT 59.107 43.478 0.00 0.00 36.95 1.28
4076 9404 3.289836 TCCATCGGAGTCGGTTACAATA 58.710 45.455 0.00 0.00 36.95 1.90
4077 9405 2.104967 TCCATCGGAGTCGGTTACAAT 58.895 47.619 0.00 0.00 36.95 2.71
4078 9406 1.548081 TCCATCGGAGTCGGTTACAA 58.452 50.000 0.00 0.00 36.95 2.41
4079 9407 1.548081 TTCCATCGGAGTCGGTTACA 58.452 50.000 0.00 0.00 36.95 2.41
4080 9408 2.884894 ATTCCATCGGAGTCGGTTAC 57.115 50.000 0.00 0.00 36.95 2.50
4081 9409 3.289836 TGTATTCCATCGGAGTCGGTTA 58.710 45.455 0.00 0.00 36.95 2.85
4082 9410 2.104967 TGTATTCCATCGGAGTCGGTT 58.895 47.619 0.00 0.00 36.95 4.44
4083 9411 1.771565 TGTATTCCATCGGAGTCGGT 58.228 50.000 0.00 0.00 36.95 4.69
4084 9412 2.882927 TTGTATTCCATCGGAGTCGG 57.117 50.000 0.00 0.00 36.95 4.79
4085 9413 4.368315 TCAATTGTATTCCATCGGAGTCG 58.632 43.478 5.13 0.00 31.21 4.18
4086 9414 5.360591 ACTCAATTGTATTCCATCGGAGTC 58.639 41.667 5.13 0.00 31.21 3.36
4087 9415 5.359194 ACTCAATTGTATTCCATCGGAGT 57.641 39.130 5.13 0.00 31.21 3.85
4088 9416 5.504665 GCAACTCAATTGTATTCCATCGGAG 60.505 44.000 5.13 0.00 40.77 4.63
4089 9417 4.335315 GCAACTCAATTGTATTCCATCGGA 59.665 41.667 5.13 0.00 40.77 4.55
4090 9418 4.096231 TGCAACTCAATTGTATTCCATCGG 59.904 41.667 5.13 0.00 40.77 4.18
4091 9419 5.233957 TGCAACTCAATTGTATTCCATCG 57.766 39.130 5.13 0.00 40.77 3.84
4092 9420 6.040166 AGGATGCAACTCAATTGTATTCCATC 59.960 38.462 14.75 14.75 42.98 3.51
4093 9421 5.895534 AGGATGCAACTCAATTGTATTCCAT 59.104 36.000 5.13 3.21 42.98 3.41
4094 9422 5.263599 AGGATGCAACTCAATTGTATTCCA 58.736 37.500 5.13 0.00 42.98 3.53
4095 9423 5.841957 AGGATGCAACTCAATTGTATTCC 57.158 39.130 5.13 4.23 42.98 3.01
4096 9424 9.277783 ACTATAGGATGCAACTCAATTGTATTC 57.722 33.333 5.13 0.00 42.98 1.75
4097 9425 9.277783 GACTATAGGATGCAACTCAATTGTATT 57.722 33.333 5.13 0.00 42.98 1.89
4098 9426 8.654997 AGACTATAGGATGCAACTCAATTGTAT 58.345 33.333 5.13 0.00 45.30 2.29
4099 9427 8.023021 AGACTATAGGATGCAACTCAATTGTA 57.977 34.615 5.13 0.00 40.77 2.41
4100 9428 6.893583 AGACTATAGGATGCAACTCAATTGT 58.106 36.000 5.13 0.00 40.77 2.71
4101 9429 7.798596 AAGACTATAGGATGCAACTCAATTG 57.201 36.000 4.43 0.00 41.69 2.32
4102 9430 8.814038 AAAAGACTATAGGATGCAACTCAATT 57.186 30.769 4.43 0.00 0.00 2.32
4103 9431 9.331282 GTAAAAGACTATAGGATGCAACTCAAT 57.669 33.333 4.43 0.00 0.00 2.57
4104 9432 8.318412 TGTAAAAGACTATAGGATGCAACTCAA 58.682 33.333 4.43 0.00 0.00 3.02
4105 9433 7.847096 TGTAAAAGACTATAGGATGCAACTCA 58.153 34.615 4.43 0.00 0.00 3.41
4106 9434 8.768955 CATGTAAAAGACTATAGGATGCAACTC 58.231 37.037 4.43 0.00 0.00 3.01
4107 9435 7.716998 CCATGTAAAAGACTATAGGATGCAACT 59.283 37.037 4.43 0.00 0.00 3.16
4108 9436 7.499232 ACCATGTAAAAGACTATAGGATGCAAC 59.501 37.037 4.43 0.00 0.00 4.17
4109 9437 7.573710 ACCATGTAAAAGACTATAGGATGCAA 58.426 34.615 4.43 0.00 0.00 4.08
4110 9438 7.136822 ACCATGTAAAAGACTATAGGATGCA 57.863 36.000 4.43 0.00 0.00 3.96
4111 9439 9.372369 GATACCATGTAAAAGACTATAGGATGC 57.628 37.037 4.43 0.00 0.00 3.91
4114 9442 9.656323 ACTGATACCATGTAAAAGACTATAGGA 57.344 33.333 4.43 0.00 0.00 2.94
4120 9448 9.220767 GAGAAAACTGATACCATGTAAAAGACT 57.779 33.333 0.00 0.00 0.00 3.24
4121 9449 8.451748 GGAGAAAACTGATACCATGTAAAAGAC 58.548 37.037 0.00 0.00 0.00 3.01
4122 9450 7.610305 GGGAGAAAACTGATACCATGTAAAAGA 59.390 37.037 0.00 0.00 0.00 2.52
4123 9451 7.414098 CGGGAGAAAACTGATACCATGTAAAAG 60.414 40.741 0.00 0.00 0.00 2.27
4124 9452 6.373216 CGGGAGAAAACTGATACCATGTAAAA 59.627 38.462 0.00 0.00 0.00 1.52
4125 9453 5.878116 CGGGAGAAAACTGATACCATGTAAA 59.122 40.000 0.00 0.00 0.00 2.01
4126 9454 5.188163 TCGGGAGAAAACTGATACCATGTAA 59.812 40.000 0.00 0.00 34.75 2.41
4127 9455 4.712829 TCGGGAGAAAACTGATACCATGTA 59.287 41.667 0.00 0.00 34.75 2.29
4128 9456 3.517901 TCGGGAGAAAACTGATACCATGT 59.482 43.478 0.00 0.00 34.75 3.21
4129 9457 4.137116 TCGGGAGAAAACTGATACCATG 57.863 45.455 0.00 0.00 34.75 3.66
4130 9458 4.656112 AGATCGGGAGAAAACTGATACCAT 59.344 41.667 0.00 0.00 45.37 3.55
4131 9459 4.030913 AGATCGGGAGAAAACTGATACCA 58.969 43.478 0.00 0.00 45.37 3.25
4132 9460 4.342665 AGAGATCGGGAGAAAACTGATACC 59.657 45.833 0.00 0.00 45.37 2.73
4133 9461 5.300792 AGAGAGATCGGGAGAAAACTGATAC 59.699 44.000 0.00 0.00 45.37 2.24
4134 9462 5.450453 AGAGAGATCGGGAGAAAACTGATA 58.550 41.667 0.00 0.00 45.37 2.15
4135 9463 4.285863 AGAGAGATCGGGAGAAAACTGAT 58.714 43.478 0.00 0.00 45.37 2.90
4136 9464 3.697045 GAGAGAGATCGGGAGAAAACTGA 59.303 47.826 0.00 0.00 45.37 3.41
4137 9465 3.488384 CGAGAGAGATCGGGAGAAAACTG 60.488 52.174 0.00 0.00 45.37 3.16
4138 9466 2.685897 CGAGAGAGATCGGGAGAAAACT 59.314 50.000 0.00 0.00 45.37 2.66
4139 9467 2.796735 GCGAGAGAGATCGGGAGAAAAC 60.797 54.545 0.00 0.00 45.37 2.43
4140 9468 1.405821 GCGAGAGAGATCGGGAGAAAA 59.594 52.381 0.00 0.00 45.37 2.29
4141 9469 1.025812 GCGAGAGAGATCGGGAGAAA 58.974 55.000 0.00 0.00 45.37 2.52
4142 9470 0.181587 AGCGAGAGAGATCGGGAGAA 59.818 55.000 0.00 0.00 45.37 2.87
4143 9471 0.181587 AAGCGAGAGAGATCGGGAGA 59.818 55.000 0.00 0.00 42.94 3.71
4144 9472 0.591170 GAAGCGAGAGAGATCGGGAG 59.409 60.000 0.00 0.00 42.94 4.30
4145 9473 0.820074 GGAAGCGAGAGAGATCGGGA 60.820 60.000 0.00 0.00 42.94 5.14
4146 9474 1.657556 GGAAGCGAGAGAGATCGGG 59.342 63.158 0.00 0.00 42.94 5.14
4147 9475 1.281353 CGGAAGCGAGAGAGATCGG 59.719 63.158 0.00 0.00 42.94 4.18
4148 9476 4.912173 CGGAAGCGAGAGAGATCG 57.088 61.111 0.00 0.00 45.48 3.69
4160 9488 4.593864 GGCGGCCTAGAGCGGAAG 62.594 72.222 12.87 0.00 44.26 3.46
4193 9521 3.902086 GTAGAGAGGGGCGACGGC 61.902 72.222 13.84 13.84 38.90 5.68
4194 9522 3.217743 GGTAGAGAGGGGCGACGG 61.218 72.222 0.00 0.00 0.00 4.79
4195 9523 2.124236 AGGTAGAGAGGGGCGACG 60.124 66.667 0.00 0.00 0.00 5.12
4196 9524 2.787567 GCAGGTAGAGAGGGGCGAC 61.788 68.421 0.00 0.00 0.00 5.19
4197 9525 2.442272 GCAGGTAGAGAGGGGCGA 60.442 66.667 0.00 0.00 0.00 5.54
4198 9526 3.541713 GGCAGGTAGAGAGGGGCG 61.542 72.222 0.00 0.00 0.00 6.13
4199 9527 3.541713 CGGCAGGTAGAGAGGGGC 61.542 72.222 0.00 0.00 0.00 5.80
4200 9528 3.541713 GCGGCAGGTAGAGAGGGG 61.542 72.222 0.00 0.00 0.00 4.79
4201 9529 3.541713 GGCGGCAGGTAGAGAGGG 61.542 72.222 3.07 0.00 0.00 4.30
4202 9530 3.905678 CGGCGGCAGGTAGAGAGG 61.906 72.222 10.53 0.00 0.00 3.69
4203 9531 4.577246 GCGGCGGCAGGTAGAGAG 62.577 72.222 9.78 0.00 39.62 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.