Multiple sequence alignment - TraesCS1B01G016800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G016800 chr1B 100.000 3352 0 0 1 3352 8179389 8182740 0.000000e+00 6191.0
1 TraesCS1B01G016800 chr1B 87.910 1158 87 29 1511 2626 639447708 639448854 0.000000e+00 1314.0
2 TraesCS1B01G016800 chr1B 93.019 530 33 4 284 810 333496364 333496892 0.000000e+00 771.0
3 TraesCS1B01G016800 chr1B 92.551 537 31 3 285 817 1981108 1980577 0.000000e+00 761.0
4 TraesCS1B01G016800 chr1B 85.380 684 82 11 1476 2147 644621702 644621025 0.000000e+00 693.0
5 TraesCS1B01G016800 chr1B 93.393 333 13 5 2232 2563 17836634 17836310 5.030000e-133 484.0
6 TraesCS1B01G016800 chr1B 83.448 435 39 20 2948 3352 639449743 639450174 1.140000e-99 374.0
7 TraesCS1B01G016800 chr1B 85.235 298 22 10 1185 1475 41001599 41001881 1.520000e-73 287.0
8 TraesCS1B01G016800 chr1B 82.609 299 28 13 1185 1475 644622160 644621878 3.340000e-60 243.0
9 TraesCS1B01G016800 chr1B 84.753 223 15 11 2608 2824 639448862 639449071 4.380000e-49 206.0
10 TraesCS1B01G016800 chr1B 93.846 130 4 4 1 128 262609389 262609516 3.410000e-45 193.0
11 TraesCS1B01G016800 chr1B 92.308 130 4 6 1 128 428543216 428543341 2.660000e-41 180.0
12 TraesCS1B01G016800 chr1B 78.431 204 27 15 821 1016 23813708 23813514 2.110000e-22 117.0
13 TraesCS1B01G016800 chr1D 84.163 1326 125 37 1472 2776 5452057 5453318 0.000000e+00 1206.0
14 TraesCS1B01G016800 chr1D 83.784 444 32 19 1057 1475 5451076 5451504 5.250000e-103 385.0
15 TraesCS1B01G016800 chr1D 85.241 332 21 16 3047 3352 5453538 5453867 1.940000e-82 316.0
16 TraesCS1B01G016800 chrUn 93.317 823 43 5 1 817 309039465 309038649 0.000000e+00 1205.0
17 TraesCS1B01G016800 chrUn 86.842 684 70 16 1475 2147 187023846 187024520 0.000000e+00 747.0
18 TraesCS1B01G016800 chrUn 86.486 296 19 10 1185 1475 187023038 187023317 4.200000e-79 305.0
19 TraesCS1B01G016800 chr1A 86.808 993 91 20 1473 2440 6767220 6766243 0.000000e+00 1072.0
20 TraesCS1B01G016800 chr1A 85.164 856 61 28 2022 2855 6765576 6764765 0.000000e+00 817.0
21 TraesCS1B01G016800 chr1A 85.366 369 18 16 3014 3350 6764464 6764100 1.910000e-92 350.0
22 TraesCS1B01G016800 chr1A 88.235 238 18 5 1036 1265 6768566 6768331 3.290000e-70 276.0
23 TraesCS1B01G016800 chr1A 81.949 277 20 9 2431 2704 6765830 6765581 1.220000e-49 207.0
24 TraesCS1B01G016800 chr1A 82.540 126 16 4 1350 1475 6768215 6768096 4.570000e-19 106.0
25 TraesCS1B01G016800 chr6B 93.813 695 39 4 126 817 525940985 525940292 0.000000e+00 1042.0
26 TraesCS1B01G016800 chr2B 92.725 701 44 6 126 821 752608298 752607600 0.000000e+00 1005.0
27 TraesCS1B01G016800 chr2B 88.652 282 23 8 130 407 449107556 449107832 5.360000e-88 335.0
28 TraesCS1B01G016800 chr2B 97.945 146 3 0 126 271 752608081 752607936 1.540000e-63 254.0
29 TraesCS1B01G016800 chr2B 93.567 171 8 3 126 296 221929970 221930137 5.550000e-63 252.0
30 TraesCS1B01G016800 chr2B 86.301 219 18 11 126 336 73971513 73971727 9.360000e-56 228.0
31 TraesCS1B01G016800 chr3B 91.680 649 49 5 172 817 759569079 759569725 0.000000e+00 894.0
32 TraesCS1B01G016800 chr3B 91.897 580 40 7 240 815 759574652 759574076 0.000000e+00 804.0
33 TraesCS1B01G016800 chr3B 89.722 467 25 11 1 466 816035503 816035059 2.900000e-160 575.0
34 TraesCS1B01G016800 chr2A 92.376 564 37 6 261 820 762659006 762659567 0.000000e+00 798.0
35 TraesCS1B01G016800 chr2A 86.242 298 20 10 1185 1475 57439108 57438825 1.510000e-78 303.0
36 TraesCS1B01G016800 chr2A 86.102 295 19 10 1185 1472 64991654 64991933 7.030000e-77 298.0
37 TraesCS1B01G016800 chr7D 86.950 682 74 11 1475 2147 614264675 614265350 0.000000e+00 752.0
38 TraesCS1B01G016800 chr7D 87.248 298 16 10 1185 1475 614263864 614264146 1.500000e-83 320.0
39 TraesCS1B01G016800 chr5D 86.842 684 70 16 1475 2147 523437173 523437847 0.000000e+00 747.0
40 TraesCS1B01G016800 chr5D 86.486 296 19 10 1185 1475 523436365 523436644 4.200000e-79 305.0
41 TraesCS1B01G016800 chr5D 95.385 130 3 3 1 128 27264017 27264145 1.580000e-48 204.0
42 TraesCS1B01G016800 chr7B 92.264 530 31 3 289 817 440209953 440210473 0.000000e+00 743.0
43 TraesCS1B01G016800 chr7B 92.366 131 6 4 1 128 501942198 501942327 2.050000e-42 183.0
44 TraesCS1B01G016800 chr7B 91.603 131 7 4 1 128 501938268 501938397 9.560000e-41 178.0
45 TraesCS1B01G016800 chr7B 91.603 131 7 4 1 128 501940887 501941016 9.560000e-41 178.0
46 TraesCS1B01G016800 chr4D 86.384 683 76 12 1475 2147 408289423 408290098 0.000000e+00 730.0
47 TraesCS1B01G016800 chr4D 82.935 293 18 13 1185 1475 408288632 408288894 5.590000e-58 235.0
48 TraesCS1B01G016800 chr5B 84.751 682 87 12 1475 2147 548908787 548908114 0.000000e+00 667.0
49 TraesCS1B01G016800 chr5B 83.557 298 27 10 1185 1475 548909598 548909316 3.320000e-65 259.0
50 TraesCS1B01G016800 chr7A 88.803 518 31 12 2034 2539 692313324 692312822 7.950000e-171 610.0
51 TraesCS1B01G016800 chr7A 86.392 485 30 16 2896 3352 692312113 692311637 6.460000e-137 497.0
52 TraesCS1B01G016800 chr7A 80.972 247 31 7 2561 2803 692312580 692312346 7.390000e-42 182.0
53 TraesCS1B01G016800 chr7A 90.164 61 3 1 3047 3104 692218252 692218192 3.590000e-10 76.8
54 TraesCS1B01G016800 chr6A 85.906 298 20 11 1185 1475 615647871 615647589 7.030000e-77 298.0
55 TraesCS1B01G016800 chr5A 84.228 298 26 10 1185 1475 399587360 399587643 1.530000e-68 270.0
56 TraesCS1B01G016800 chr5A 78.607 201 32 9 818 1012 696330806 696331001 4.540000e-24 122.0
57 TraesCS1B01G016800 chr3D 92.308 130 6 4 1 128 328015328 328015201 7.390000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G016800 chr1B 8179389 8182740 3351 False 6191.000000 6191 100.000000 1 3352 1 chr1B.!!$F1 3351
1 TraesCS1B01G016800 chr1B 333496364 333496892 528 False 771.000000 771 93.019000 284 810 1 chr1B.!!$F4 526
2 TraesCS1B01G016800 chr1B 1980577 1981108 531 True 761.000000 761 92.551000 285 817 1 chr1B.!!$R1 532
3 TraesCS1B01G016800 chr1B 639447708 639450174 2466 False 631.333333 1314 85.370333 1511 3352 3 chr1B.!!$F6 1841
4 TraesCS1B01G016800 chr1B 644621025 644622160 1135 True 468.000000 693 83.994500 1185 2147 2 chr1B.!!$R4 962
5 TraesCS1B01G016800 chr1D 5451076 5453867 2791 False 635.666667 1206 84.396000 1057 3352 3 chr1D.!!$F1 2295
6 TraesCS1B01G016800 chrUn 309038649 309039465 816 True 1205.000000 1205 93.317000 1 817 1 chrUn.!!$R1 816
7 TraesCS1B01G016800 chrUn 187023038 187024520 1482 False 526.000000 747 86.664000 1185 2147 2 chrUn.!!$F1 962
8 TraesCS1B01G016800 chr1A 6764100 6768566 4466 True 471.333333 1072 85.010333 1036 3350 6 chr1A.!!$R1 2314
9 TraesCS1B01G016800 chr6B 525940292 525940985 693 True 1042.000000 1042 93.813000 126 817 1 chr6B.!!$R1 691
10 TraesCS1B01G016800 chr2B 752607600 752608298 698 True 629.500000 1005 95.335000 126 821 2 chr2B.!!$R1 695
11 TraesCS1B01G016800 chr3B 759569079 759569725 646 False 894.000000 894 91.680000 172 817 1 chr3B.!!$F1 645
12 TraesCS1B01G016800 chr3B 759574076 759574652 576 True 804.000000 804 91.897000 240 815 1 chr3B.!!$R1 575
13 TraesCS1B01G016800 chr2A 762659006 762659567 561 False 798.000000 798 92.376000 261 820 1 chr2A.!!$F2 559
14 TraesCS1B01G016800 chr7D 614263864 614265350 1486 False 536.000000 752 87.099000 1185 2147 2 chr7D.!!$F1 962
15 TraesCS1B01G016800 chr5D 523436365 523437847 1482 False 526.000000 747 86.664000 1185 2147 2 chr5D.!!$F2 962
16 TraesCS1B01G016800 chr7B 440209953 440210473 520 False 743.000000 743 92.264000 289 817 1 chr7B.!!$F1 528
17 TraesCS1B01G016800 chr4D 408288632 408290098 1466 False 482.500000 730 84.659500 1185 2147 2 chr4D.!!$F1 962
18 TraesCS1B01G016800 chr5B 548908114 548909598 1484 True 463.000000 667 84.154000 1185 2147 2 chr5B.!!$R1 962
19 TraesCS1B01G016800 chr7A 692311637 692313324 1687 True 429.666667 610 85.389000 2034 3352 3 chr7A.!!$R2 1318

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 970 0.035056 ATTCGCTCCTGGTTTCCTGG 60.035 55.0 5.52 5.52 42.93 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2369 4634 0.248843 GTTGAGAGGCAGCAGCTAGT 59.751 55.0 0.0 0.0 41.7 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
821 836 3.244911 CGGCATATAGGATTTTCCAGGGT 60.245 47.826 0.00 0.00 39.61 4.34
822 837 4.740902 GGCATATAGGATTTTCCAGGGTT 58.259 43.478 0.00 0.00 39.61 4.11
823 838 5.147767 GGCATATAGGATTTTCCAGGGTTT 58.852 41.667 0.00 0.00 39.61 3.27
824 839 5.243954 GGCATATAGGATTTTCCAGGGTTTC 59.756 44.000 0.00 0.00 39.61 2.78
825 840 5.243954 GCATATAGGATTTTCCAGGGTTTCC 59.756 44.000 0.00 0.00 39.61 3.13
826 841 6.614657 CATATAGGATTTTCCAGGGTTTCCT 58.385 40.000 6.45 6.45 46.26 3.36
827 842 3.458044 AGGATTTTCCAGGGTTTCCTC 57.542 47.619 0.00 0.00 42.67 3.71
828 843 2.043115 AGGATTTTCCAGGGTTTCCTCC 59.957 50.000 0.00 0.00 42.67 4.30
829 844 2.457598 GATTTTCCAGGGTTTCCTCCC 58.542 52.381 0.00 0.00 42.67 4.30
835 850 2.987962 GGGTTTCCTCCCGACCTC 59.012 66.667 0.00 0.00 37.93 3.85
836 851 1.916777 GGGTTTCCTCCCGACCTCA 60.917 63.158 0.00 0.00 37.93 3.86
837 852 1.272554 GGGTTTCCTCCCGACCTCAT 61.273 60.000 0.00 0.00 37.93 2.90
838 853 0.107654 GGTTTCCTCCCGACCTCATG 60.108 60.000 0.00 0.00 0.00 3.07
839 854 0.902531 GTTTCCTCCCGACCTCATGA 59.097 55.000 0.00 0.00 0.00 3.07
840 855 1.134670 GTTTCCTCCCGACCTCATGAG 60.135 57.143 16.24 16.24 0.00 2.90
849 864 4.528674 CCTCATGAGGCGTGGAAG 57.471 61.111 28.45 2.83 42.44 3.46
850 865 1.817099 CCTCATGAGGCGTGGAAGC 60.817 63.158 28.45 0.00 42.44 3.86
858 873 2.281484 GCGTGGAAGCCTCAACCA 60.281 61.111 0.00 0.00 0.00 3.67
859 874 2.328099 GCGTGGAAGCCTCAACCAG 61.328 63.158 0.00 0.00 34.21 4.00
860 875 1.672356 CGTGGAAGCCTCAACCAGG 60.672 63.158 0.00 0.00 46.82 4.45
861 876 1.303643 GTGGAAGCCTCAACCAGGG 60.304 63.158 0.00 0.00 43.70 4.45
862 877 1.463214 TGGAAGCCTCAACCAGGGA 60.463 57.895 0.00 0.00 43.70 4.20
863 878 1.065410 TGGAAGCCTCAACCAGGGAA 61.065 55.000 0.00 0.00 43.70 3.97
864 879 0.112412 GGAAGCCTCAACCAGGGAAA 59.888 55.000 0.00 0.00 43.70 3.13
865 880 1.480498 GGAAGCCTCAACCAGGGAAAA 60.480 52.381 0.00 0.00 43.70 2.29
866 881 1.613925 GAAGCCTCAACCAGGGAAAAC 59.386 52.381 0.00 0.00 43.70 2.43
867 882 0.853530 AGCCTCAACCAGGGAAAACT 59.146 50.000 0.00 0.00 43.70 2.66
868 883 1.202940 AGCCTCAACCAGGGAAAACTC 60.203 52.381 0.00 0.00 43.70 3.01
869 884 1.523758 CCTCAACCAGGGAAAACTCG 58.476 55.000 0.00 0.00 38.91 4.18
870 885 1.202770 CCTCAACCAGGGAAAACTCGT 60.203 52.381 0.00 0.00 38.91 4.18
871 886 1.873591 CTCAACCAGGGAAAACTCGTG 59.126 52.381 0.00 0.00 0.00 4.35
872 887 0.951558 CAACCAGGGAAAACTCGTGG 59.048 55.000 0.00 0.00 43.49 4.94
873 888 0.841289 AACCAGGGAAAACTCGTGGA 59.159 50.000 9.39 0.00 41.25 4.02
874 889 0.841289 ACCAGGGAAAACTCGTGGAA 59.159 50.000 9.39 0.00 41.25 3.53
875 890 1.213430 ACCAGGGAAAACTCGTGGAAA 59.787 47.619 9.39 0.00 41.25 3.13
876 891 1.880027 CCAGGGAAAACTCGTGGAAAG 59.120 52.381 0.00 0.00 41.25 2.62
877 892 2.486548 CCAGGGAAAACTCGTGGAAAGA 60.487 50.000 0.00 0.00 41.25 2.52
879 894 1.535896 GGGAAAACTCGTGGAAAGAGC 59.464 52.381 0.00 0.00 46.90 4.09
880 895 2.218603 GGAAAACTCGTGGAAAGAGCA 58.781 47.619 0.00 0.00 46.90 4.26
881 896 2.224314 GGAAAACTCGTGGAAAGAGCAG 59.776 50.000 0.00 0.00 46.90 4.24
882 897 2.910688 AAACTCGTGGAAAGAGCAGA 57.089 45.000 0.00 0.00 46.90 4.26
883 898 3.409026 AAACTCGTGGAAAGAGCAGAT 57.591 42.857 0.00 0.00 46.90 2.90
884 899 2.663826 ACTCGTGGAAAGAGCAGATC 57.336 50.000 0.00 0.00 46.90 2.75
885 900 2.175202 ACTCGTGGAAAGAGCAGATCT 58.825 47.619 0.00 0.00 46.90 2.75
886 901 2.094286 ACTCGTGGAAAGAGCAGATCTG 60.094 50.000 18.84 18.84 46.90 2.90
898 913 3.650899 AGATCTGCCCAGGTCTGAT 57.349 52.632 10.13 0.00 46.52 2.90
899 914 1.129917 AGATCTGCCCAGGTCTGATG 58.870 55.000 10.13 0.00 46.52 3.07
900 915 0.108207 GATCTGCCCAGGTCTGATGG 59.892 60.000 1.35 0.00 35.71 3.51
905 920 4.972875 CCAGGTCTGATGGGCTTC 57.027 61.111 0.00 0.00 33.94 3.86
906 921 1.225704 CCAGGTCTGATGGGCTTCC 59.774 63.158 0.00 0.00 33.94 3.46
907 922 1.565390 CCAGGTCTGATGGGCTTCCA 61.565 60.000 0.00 0.00 45.91 3.53
908 923 0.329261 CAGGTCTGATGGGCTTCCAA 59.671 55.000 0.00 0.00 44.86 3.53
909 924 1.075601 AGGTCTGATGGGCTTCCAAA 58.924 50.000 0.00 0.00 44.86 3.28
910 925 1.642762 AGGTCTGATGGGCTTCCAAAT 59.357 47.619 0.00 0.00 44.86 2.32
911 926 1.753073 GGTCTGATGGGCTTCCAAATG 59.247 52.381 0.00 0.00 44.86 2.32
912 927 1.135721 GTCTGATGGGCTTCCAAATGC 59.864 52.381 0.00 0.00 44.86 3.56
913 928 0.101759 CTGATGGGCTTCCAAATGCG 59.898 55.000 0.00 0.00 44.86 4.73
914 929 1.227060 GATGGGCTTCCAAATGCGC 60.227 57.895 0.00 0.00 44.86 6.09
915 930 1.669999 GATGGGCTTCCAAATGCGCT 61.670 55.000 9.73 0.00 44.86 5.92
916 931 1.952102 ATGGGCTTCCAAATGCGCTG 61.952 55.000 9.73 0.00 44.86 5.18
917 932 2.182537 GGCTTCCAAATGCGCTGG 59.817 61.111 9.73 8.64 35.05 4.85
918 933 2.639327 GGCTTCCAAATGCGCTGGT 61.639 57.895 9.73 0.00 35.30 4.00
919 934 1.444895 GCTTCCAAATGCGCTGGTG 60.445 57.895 9.73 7.20 35.30 4.17
920 935 1.213537 CTTCCAAATGCGCTGGTGG 59.786 57.895 9.73 13.12 35.30 4.61
921 936 1.228398 TTCCAAATGCGCTGGTGGA 60.228 52.632 18.57 18.57 38.39 4.02
922 937 0.611618 TTCCAAATGCGCTGGTGGAT 60.612 50.000 21.67 0.00 39.84 3.41
923 938 1.031571 TCCAAATGCGCTGGTGGATC 61.032 55.000 18.57 0.00 35.22 3.36
924 939 1.063006 CAAATGCGCTGGTGGATCG 59.937 57.895 9.73 0.00 0.00 3.69
935 950 4.739495 TGGATCGCCCAGGGATAA 57.261 55.556 10.89 0.00 40.82 1.75
936 951 2.938301 TGGATCGCCCAGGGATAAA 58.062 52.632 10.89 0.00 40.82 1.40
937 952 1.444933 TGGATCGCCCAGGGATAAAT 58.555 50.000 10.89 0.00 40.82 1.40
938 953 1.780309 TGGATCGCCCAGGGATAAATT 59.220 47.619 10.89 0.00 40.82 1.82
939 954 2.224769 TGGATCGCCCAGGGATAAATTC 60.225 50.000 10.89 0.00 40.82 2.17
940 955 2.076863 GATCGCCCAGGGATAAATTCG 58.923 52.381 10.89 0.51 35.38 3.34
941 956 0.534203 TCGCCCAGGGATAAATTCGC 60.534 55.000 10.89 0.00 37.56 4.70
943 958 1.239347 GCCCAGGGATAAATTCGCTC 58.761 55.000 10.89 0.00 45.22 5.03
944 959 1.897560 CCCAGGGATAAATTCGCTCC 58.102 55.000 0.00 0.00 45.22 4.70
945 960 1.421646 CCCAGGGATAAATTCGCTCCT 59.578 52.381 0.00 0.00 45.22 3.69
946 961 2.498167 CCAGGGATAAATTCGCTCCTG 58.502 52.381 0.00 0.00 45.22 3.86
947 962 2.498167 CAGGGATAAATTCGCTCCTGG 58.502 52.381 0.00 0.00 45.22 4.45
948 963 2.127708 AGGGATAAATTCGCTCCTGGT 58.872 47.619 0.00 0.00 43.73 4.00
949 964 2.509964 AGGGATAAATTCGCTCCTGGTT 59.490 45.455 0.00 0.00 43.73 3.67
950 965 3.053619 AGGGATAAATTCGCTCCTGGTTT 60.054 43.478 0.00 0.00 43.73 3.27
951 966 3.315470 GGGATAAATTCGCTCCTGGTTTC 59.685 47.826 0.00 0.00 34.56 2.78
952 967 3.315470 GGATAAATTCGCTCCTGGTTTCC 59.685 47.826 0.00 0.00 0.00 3.13
953 968 2.586648 AAATTCGCTCCTGGTTTCCT 57.413 45.000 0.00 0.00 0.00 3.36
954 969 1.826385 AATTCGCTCCTGGTTTCCTG 58.174 50.000 0.00 0.00 0.00 3.86
955 970 0.035056 ATTCGCTCCTGGTTTCCTGG 60.035 55.000 5.52 5.52 42.93 4.45
956 971 2.747855 CGCTCCTGGTTTCCTGGC 60.748 66.667 6.80 0.00 41.59 4.85
957 972 2.361737 GCTCCTGGTTTCCTGGCC 60.362 66.667 0.00 0.00 41.59 5.36
958 973 2.356667 CTCCTGGTTTCCTGGCCC 59.643 66.667 0.00 0.00 41.59 5.80
959 974 3.628646 CTCCTGGTTTCCTGGCCCG 62.629 68.421 0.00 0.00 41.59 6.13
960 975 4.740822 CCTGGTTTCCTGGCCCGG 62.741 72.222 6.92 6.92 35.90 5.73
961 976 4.740822 CTGGTTTCCTGGCCCGGG 62.741 72.222 19.09 19.09 0.00 5.73
964 979 3.974293 GTTTCCTGGCCCGGGGAA 61.974 66.667 25.28 14.52 39.52 3.97
965 980 2.944390 TTTCCTGGCCCGGGGAAT 60.944 61.111 25.28 0.00 40.69 3.01
966 981 1.619975 TTTCCTGGCCCGGGGAATA 60.620 57.895 25.28 5.44 40.69 1.75
967 982 1.641552 TTTCCTGGCCCGGGGAATAG 61.642 60.000 25.28 10.83 40.69 1.73
968 983 3.570212 CCTGGCCCGGGGAATAGG 61.570 72.222 25.28 16.15 0.00 2.57
969 984 4.271016 CTGGCCCGGGGAATAGGC 62.271 72.222 25.28 7.79 46.37 3.93
972 987 4.271016 GCCCGGGGAATAGGCAGG 62.271 72.222 25.28 0.00 46.34 4.85
973 988 3.570212 CCCGGGGAATAGGCAGGG 61.570 72.222 14.71 0.00 0.00 4.45
974 989 2.447765 CCGGGGAATAGGCAGGGA 60.448 66.667 0.00 0.00 0.00 4.20
975 990 1.847968 CCGGGGAATAGGCAGGGAT 60.848 63.158 0.00 0.00 0.00 3.85
976 991 1.679898 CGGGGAATAGGCAGGGATC 59.320 63.158 0.00 0.00 0.00 3.36
977 992 1.842381 CGGGGAATAGGCAGGGATCC 61.842 65.000 1.92 1.92 0.00 3.36
978 993 2.079326 GGGAATAGGCAGGGATCCC 58.921 63.158 24.59 24.59 42.74 3.85
979 994 1.501654 GGGAATAGGCAGGGATCCCC 61.502 65.000 28.11 13.02 43.30 4.81
994 1009 3.738481 CCCCCGGGATTGCCTGAA 61.738 66.667 26.32 0.00 43.76 3.02
995 1010 2.358619 CCCCGGGATTGCCTGAAA 59.641 61.111 26.32 0.00 43.76 2.69
996 1011 2.052104 CCCCGGGATTGCCTGAAAC 61.052 63.158 26.32 0.00 43.76 2.78
997 1012 2.052104 CCCGGGATTGCCTGAAACC 61.052 63.158 18.48 0.00 43.76 3.27
998 1013 1.304052 CCGGGATTGCCTGAAACCA 60.304 57.895 0.00 0.00 43.76 3.67
999 1014 0.897863 CCGGGATTGCCTGAAACCAA 60.898 55.000 0.00 0.00 43.76 3.67
1000 1015 0.965439 CGGGATTGCCTGAAACCAAA 59.035 50.000 0.00 0.00 43.76 3.28
1001 1016 1.550072 CGGGATTGCCTGAAACCAAAT 59.450 47.619 0.00 0.00 43.76 2.32
1002 1017 2.674747 CGGGATTGCCTGAAACCAAATG 60.675 50.000 0.00 0.00 43.76 2.32
1003 1018 2.566724 GGGATTGCCTGAAACCAAATGA 59.433 45.455 0.00 0.00 0.00 2.57
1004 1019 3.368739 GGGATTGCCTGAAACCAAATGAG 60.369 47.826 0.00 0.00 0.00 2.90
1005 1020 3.368739 GGATTGCCTGAAACCAAATGAGG 60.369 47.826 0.00 0.00 0.00 3.86
1006 1021 3.820595 GCCTGAAACCAAATGAGGC 57.179 52.632 0.00 0.00 42.37 4.70
1007 1022 0.247460 GCCTGAAACCAAATGAGGCC 59.753 55.000 0.00 0.00 42.97 5.19
1008 1023 1.928868 CCTGAAACCAAATGAGGCCT 58.071 50.000 3.86 3.86 0.00 5.19
1009 1024 1.821136 CCTGAAACCAAATGAGGCCTC 59.179 52.381 26.78 26.78 0.00 4.70
1010 1025 2.517959 CTGAAACCAAATGAGGCCTCA 58.482 47.619 36.73 36.73 44.59 3.86
1011 1026 2.892852 CTGAAACCAAATGAGGCCTCAA 59.107 45.455 38.02 21.94 43.58 3.02
1012 1027 3.303938 TGAAACCAAATGAGGCCTCAAA 58.696 40.909 38.02 17.87 43.58 2.69
1013 1028 3.321682 TGAAACCAAATGAGGCCTCAAAG 59.678 43.478 38.02 27.60 43.58 2.77
1014 1029 2.683211 ACCAAATGAGGCCTCAAAGT 57.317 45.000 38.02 27.12 43.58 2.66
1015 1030 2.242043 ACCAAATGAGGCCTCAAAGTG 58.758 47.619 38.02 30.73 43.58 3.16
1016 1031 2.158475 ACCAAATGAGGCCTCAAAGTGA 60.158 45.455 38.02 15.40 43.58 3.41
1017 1032 3.094572 CCAAATGAGGCCTCAAAGTGAT 58.905 45.455 38.02 18.96 43.58 3.06
1018 1033 3.512724 CCAAATGAGGCCTCAAAGTGATT 59.487 43.478 38.02 23.66 43.58 2.57
1019 1034 4.020839 CCAAATGAGGCCTCAAAGTGATTT 60.021 41.667 38.02 27.60 43.58 2.17
1020 1035 4.796038 AATGAGGCCTCAAAGTGATTTG 57.204 40.909 38.02 0.00 43.58 2.32
1021 1036 3.507162 TGAGGCCTCAAAGTGATTTGA 57.493 42.857 33.41 4.79 38.49 2.69
1022 1037 3.831323 TGAGGCCTCAAAGTGATTTGAA 58.169 40.909 33.41 4.56 40.07 2.69
1023 1038 3.822735 TGAGGCCTCAAAGTGATTTGAAG 59.177 43.478 33.41 0.79 40.07 3.02
1024 1039 4.074970 GAGGCCTCAAAGTGATTTGAAGA 58.925 43.478 28.43 0.00 40.07 2.87
1025 1040 4.473444 AGGCCTCAAAGTGATTTGAAGAA 58.527 39.130 0.00 0.00 40.07 2.52
1026 1041 4.895297 AGGCCTCAAAGTGATTTGAAGAAA 59.105 37.500 0.00 0.00 40.07 2.52
1027 1042 5.363580 AGGCCTCAAAGTGATTTGAAGAAAA 59.636 36.000 0.00 0.00 40.07 2.29
1028 1043 6.042437 AGGCCTCAAAGTGATTTGAAGAAAAT 59.958 34.615 0.00 0.00 40.07 1.82
1029 1044 6.707608 GGCCTCAAAGTGATTTGAAGAAAATT 59.292 34.615 0.00 0.00 40.07 1.82
1030 1045 7.227314 GGCCTCAAAGTGATTTGAAGAAAATTT 59.773 33.333 0.00 0.00 40.07 1.82
1031 1046 8.066000 GCCTCAAAGTGATTTGAAGAAAATTTG 58.934 33.333 5.08 0.00 40.07 2.32
1032 1047 8.066000 CCTCAAAGTGATTTGAAGAAAATTTGC 58.934 33.333 5.08 0.00 40.07 3.68
1033 1048 7.918643 TCAAAGTGATTTGAAGAAAATTTGCC 58.081 30.769 1.09 0.00 38.64 4.52
1034 1049 7.551974 TCAAAGTGATTTGAAGAAAATTTGCCA 59.448 29.630 1.09 0.00 38.64 4.92
1046 1061 2.098426 ATTTGCCAAAGCCCACCACG 62.098 55.000 0.00 0.00 38.69 4.94
1047 1062 3.723097 TTGCCAAAGCCCACCACGA 62.723 57.895 0.00 0.00 38.69 4.35
1098 1113 2.046604 CCGACCGGTTTTCCCCTC 60.047 66.667 9.42 0.00 36.42 4.30
1110 1125 4.101077 CCCCTCCCCTGCTCCTCT 62.101 72.222 0.00 0.00 0.00 3.69
1111 1126 2.445654 CCCTCCCCTGCTCCTCTC 60.446 72.222 0.00 0.00 0.00 3.20
1129 1144 3.837731 CTCTCCATTCCTATCCTTCTCCC 59.162 52.174 0.00 0.00 0.00 4.30
1249 1288 0.331616 CCCCGATTCACCCCTTCTTT 59.668 55.000 0.00 0.00 0.00 2.52
1301 1340 0.327591 AAGGGAGCTCAAGGCAGAAG 59.672 55.000 17.19 0.00 44.79 2.85
1302 1341 0.546267 AGGGAGCTCAAGGCAGAAGA 60.546 55.000 17.19 0.00 44.79 2.87
1407 1505 1.738099 CGGTTGGTCGCTTGGAGAG 60.738 63.158 0.00 0.00 0.00 3.20
1523 2634 2.223249 TGTTTTGCAACAGCGTCTTCTC 60.223 45.455 0.00 0.00 38.03 2.87
1555 2666 4.684485 CGGTTTTAGCTCCAATGGATCTCT 60.684 45.833 9.14 6.51 30.34 3.10
1558 2669 5.965033 TTTAGCTCCAATGGATCTCTCTT 57.035 39.130 9.14 0.00 30.34 2.85
1586 2697 1.667724 GTTTCTGGGATCAGTGCATCG 59.332 52.381 0.00 0.00 41.59 3.84
1608 2719 4.410400 CACTCCCCGGCAAGTCCC 62.410 72.222 0.00 0.00 0.00 4.46
1609 2720 4.974438 ACTCCCCGGCAAGTCCCA 62.974 66.667 0.00 0.00 0.00 4.37
1610 2721 4.101448 CTCCCCGGCAAGTCCCAG 62.101 72.222 0.00 0.00 0.00 4.45
1614 2725 4.020617 CCGGCAAGTCCCAGCAGA 62.021 66.667 0.00 0.00 0.00 4.26
1661 2772 2.894126 AGACAGAGACGATTGTTCAGGT 59.106 45.455 0.00 0.00 0.00 4.00
1664 2775 1.550976 AGAGACGATTGTTCAGGTCCC 59.449 52.381 0.00 0.00 0.00 4.46
1700 2811 2.565841 CTAGAGTGCTTTGTATGGCCC 58.434 52.381 0.00 0.00 0.00 5.80
1732 2843 1.067565 AGTAGGTCGTGCTGTGATGTG 60.068 52.381 0.00 0.00 0.00 3.21
1764 2875 1.345422 TGGTTCAGATGGGGAGGCTAT 60.345 52.381 0.00 0.00 0.00 2.97
1765 2876 1.072965 GGTTCAGATGGGGAGGCTATG 59.927 57.143 0.00 0.00 0.00 2.23
1792 2904 6.571731 GCCAGTAACCCCTATTTTTCTTGTTC 60.572 42.308 0.00 0.00 0.00 3.18
1835 2947 3.011513 GCAAAGCTGCTGAATGACG 57.988 52.632 1.35 0.00 45.74 4.35
1838 2950 2.415090 GCAAAGCTGCTGAATGACGAAT 60.415 45.455 1.35 0.00 45.74 3.34
1840 2952 4.672542 GCAAAGCTGCTGAATGACGAATTA 60.673 41.667 1.35 0.00 45.74 1.40
1843 2955 5.914085 AGCTGCTGAATGACGAATTATAC 57.086 39.130 0.00 0.00 0.00 1.47
1875 2987 2.158943 GGGGAGCCACAGATTGTAGTAC 60.159 54.545 0.00 0.00 0.00 2.73
1888 3000 7.387948 ACAGATTGTAGTACAACACAAATCTCC 59.612 37.037 17.79 0.00 41.40 3.71
1890 3002 8.103305 AGATTGTAGTACAACACAAATCTCCAT 58.897 33.333 17.79 0.00 41.40 3.41
1974 3090 6.459573 GGTGCCCACATGTAGTAACATATTTG 60.460 42.308 0.00 0.00 44.70 2.32
2074 3193 5.452078 TTCATGTTTCACACCTTGGATTC 57.548 39.130 0.00 0.00 0.00 2.52
2080 3199 3.048337 TCACACCTTGGATTCGTAACC 57.952 47.619 0.00 0.00 0.00 2.85
2115 4347 2.429971 TCACATTTTTGTCCTGCAGCAA 59.570 40.909 8.66 5.34 0.00 3.91
2117 4349 2.137523 CATTTTTGTCCTGCAGCAACC 58.862 47.619 8.66 0.00 0.00 3.77
2118 4350 1.484038 TTTTTGTCCTGCAGCAACCT 58.516 45.000 8.66 0.00 0.00 3.50
2120 4352 0.823356 TTTGTCCTGCAGCAACCTCC 60.823 55.000 8.66 0.00 0.00 4.30
2123 4370 2.045536 CCTGCAGCAACCTCCTCC 60.046 66.667 8.66 0.00 0.00 4.30
2271 4521 1.297689 GAGCTGCAGGTCACCATCA 59.702 57.895 34.86 0.00 41.81 3.07
2288 4538 3.891366 CCATCAACAAGTTTGAGGACCTT 59.109 43.478 0.00 0.00 32.54 3.50
2310 4569 2.585791 GAAGAAGGAGGAGGCTGCCG 62.586 65.000 13.96 0.00 0.00 5.69
2311 4570 4.847444 GAAGGAGGAGGCTGCCGC 62.847 72.222 14.51 14.51 0.00 6.53
2360 4625 3.885297 CGGGATCCTCATAAACAAATGCT 59.115 43.478 12.58 0.00 0.00 3.79
2362 4627 5.136105 GGGATCCTCATAAACAAATGCTCT 58.864 41.667 12.58 0.00 0.00 4.09
2364 4629 5.240403 GGATCCTCATAAACAAATGCTCTCC 59.760 44.000 3.84 0.00 0.00 3.71
2365 4630 4.526970 TCCTCATAAACAAATGCTCTCCC 58.473 43.478 0.00 0.00 0.00 4.30
2366 4631 4.228210 TCCTCATAAACAAATGCTCTCCCT 59.772 41.667 0.00 0.00 0.00 4.20
2367 4632 4.952335 CCTCATAAACAAATGCTCTCCCTT 59.048 41.667 0.00 0.00 0.00 3.95
2368 4633 6.069673 TCCTCATAAACAAATGCTCTCCCTTA 60.070 38.462 0.00 0.00 0.00 2.69
2369 4634 6.603201 CCTCATAAACAAATGCTCTCCCTTAA 59.397 38.462 0.00 0.00 0.00 1.85
2370 4635 7.391148 TCATAAACAAATGCTCTCCCTTAAC 57.609 36.000 0.00 0.00 0.00 2.01
2372 4637 8.325787 TCATAAACAAATGCTCTCCCTTAACTA 58.674 33.333 0.00 0.00 0.00 2.24
2552 5069 6.214191 AGTTATGATATGATACTGCCTCCG 57.786 41.667 0.00 0.00 0.00 4.63
2591 5108 6.759827 TCTCCGCTTCAAAATATAAGGTGTAC 59.240 38.462 0.00 0.00 0.00 2.90
2620 5166 5.994250 CTGTCCCTCAGAAATAAATCAGGA 58.006 41.667 0.00 0.00 46.27 3.86
2625 5171 8.753133 GTCCCTCAGAAATAAATCAGGATTTTT 58.247 33.333 12.06 2.65 40.99 1.94
2668 5221 3.737355 GCAACGGATGGAGTAGTACCTTC 60.737 52.174 0.00 0.00 0.00 3.46
2722 5275 3.190535 GTGTTGAAATATGTTGCCCGTCT 59.809 43.478 0.00 0.00 0.00 4.18
2732 5285 0.329931 TTGCCCGTCTCTCTCTCTCT 59.670 55.000 0.00 0.00 0.00 3.10
2734 5287 0.180406 GCCCGTCTCTCTCTCTCTCT 59.820 60.000 0.00 0.00 0.00 3.10
2735 5288 1.810412 GCCCGTCTCTCTCTCTCTCTC 60.810 61.905 0.00 0.00 0.00 3.20
2769 5322 3.054434 TCGGTCTTTTGGATGGATGATGT 60.054 43.478 0.00 0.00 0.00 3.06
2770 5323 3.065786 CGGTCTTTTGGATGGATGATGTG 59.934 47.826 0.00 0.00 0.00 3.21
2776 5329 7.067372 GTCTTTTGGATGGATGATGTGTGAATA 59.933 37.037 0.00 0.00 0.00 1.75
2793 5346 5.105797 TGTGAATAGGTTGGAACATGAATGC 60.106 40.000 0.00 0.00 39.30 3.56
2817 5373 5.939764 TTCACTGTAATAGACTGCATCCT 57.060 39.130 0.00 0.00 0.00 3.24
2842 5448 4.141321 TCCTTCCATGATCTCCCAAGAATG 60.141 45.833 0.00 0.00 34.49 2.67
2852 5458 1.002134 CCAAGAATGAGGGGCGTGT 60.002 57.895 0.00 0.00 0.00 4.49
2855 5461 0.110486 AAGAATGAGGGGCGTGTGTT 59.890 50.000 0.00 0.00 0.00 3.32
2856 5462 0.606401 AGAATGAGGGGCGTGTGTTG 60.606 55.000 0.00 0.00 0.00 3.33
2859 5465 4.643387 GAGGGGCGTGTGTTGGCT 62.643 66.667 0.00 0.00 0.00 4.75
2936 6132 0.389296 AAATTTACCGCTTTGCCCGC 60.389 50.000 0.00 0.00 0.00 6.13
2962 6158 1.730902 CGCGCATCCGTCCATCTAG 60.731 63.158 8.75 0.00 36.67 2.43
2963 6159 1.364171 GCGCATCCGTCCATCTAGT 59.636 57.895 0.30 0.00 36.67 2.57
3036 6232 3.487372 CGGAAAAAGGAAGGAAGGAGTT 58.513 45.455 0.00 0.00 0.00 3.01
3040 6236 4.432980 AAAAGGAAGGAAGGAGTTTCGA 57.567 40.909 0.00 0.00 36.62 3.71
3060 6268 4.329801 TCGATCGTGTGATTGAATGAAAGG 59.670 41.667 15.94 0.00 41.17 3.11
3105 6313 0.024111 CCGTTTATTCGTTCGTCGGC 59.976 55.000 0.00 0.00 40.32 5.54
3134 6342 3.237522 GCCAGACGACGATACAGAC 57.762 57.895 0.00 0.00 0.00 3.51
3135 6343 0.589229 GCCAGACGACGATACAGACG 60.589 60.000 0.00 0.00 35.60 4.18
3136 6344 0.725686 CCAGACGACGATACAGACGT 59.274 55.000 0.00 0.00 46.58 4.34
3137 6345 1.929169 CCAGACGACGATACAGACGTA 59.071 52.381 0.00 0.00 43.97 3.57
3301 6548 4.521062 GCCATCGTGCTCGGCTCT 62.521 66.667 8.49 0.00 42.78 4.09
3327 6577 1.936767 TTCCCATGCTCATCACCCCC 61.937 60.000 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 7.964545 TCTTTGTAAGCTTTTCGAAAAGTTC 57.035 32.000 37.54 27.05 45.48 3.01
384 392 8.930760 TGACAAAATTTGTTCTTCGTTTCAAAT 58.069 25.926 13.00 0.00 45.52 2.32
458 466 9.528847 GTTTGTTCAAAAACTGTTCTTTTCATC 57.471 29.630 0.00 0.00 37.13 2.92
701 715 2.668212 CAGCGCTCCCGGTTTTGA 60.668 61.111 7.13 0.00 43.57 2.69
821 836 1.195115 CTCATGAGGTCGGGAGGAAA 58.805 55.000 15.38 0.00 0.00 3.13
822 837 2.901975 CTCATGAGGTCGGGAGGAA 58.098 57.895 15.38 0.00 0.00 3.36
823 838 4.686695 CTCATGAGGTCGGGAGGA 57.313 61.111 15.38 0.00 0.00 3.71
824 839 3.543537 CCTCATGAGGTCGGGAGG 58.456 66.667 30.55 6.28 43.61 4.30
833 848 1.817099 GGCTTCCACGCCTCATGAG 60.817 63.158 16.24 16.24 46.63 2.90
834 849 2.268920 GGCTTCCACGCCTCATGA 59.731 61.111 0.00 0.00 46.63 3.07
841 856 2.281484 TGGTTGAGGCTTCCACGC 60.281 61.111 0.00 0.00 0.00 5.34
842 857 1.672356 CCTGGTTGAGGCTTCCACG 60.672 63.158 0.00 0.00 34.01 4.94
843 858 1.303643 CCCTGGTTGAGGCTTCCAC 60.304 63.158 0.00 0.00 41.19 4.02
844 859 1.065410 TTCCCTGGTTGAGGCTTCCA 61.065 55.000 0.00 0.00 41.19 3.53
845 860 0.112412 TTTCCCTGGTTGAGGCTTCC 59.888 55.000 0.00 0.00 41.19 3.46
846 861 1.613925 GTTTTCCCTGGTTGAGGCTTC 59.386 52.381 0.00 0.00 41.19 3.86
847 862 1.217942 AGTTTTCCCTGGTTGAGGCTT 59.782 47.619 0.00 0.00 41.19 4.35
848 863 0.853530 AGTTTTCCCTGGTTGAGGCT 59.146 50.000 0.00 0.00 41.19 4.58
849 864 1.248486 GAGTTTTCCCTGGTTGAGGC 58.752 55.000 0.00 0.00 41.19 4.70
850 865 1.202770 ACGAGTTTTCCCTGGTTGAGG 60.203 52.381 0.00 0.00 42.38 3.86
851 866 1.873591 CACGAGTTTTCCCTGGTTGAG 59.126 52.381 0.00 0.00 0.00 3.02
852 867 1.476110 CCACGAGTTTTCCCTGGTTGA 60.476 52.381 0.00 0.00 0.00 3.18
853 868 0.951558 CCACGAGTTTTCCCTGGTTG 59.048 55.000 0.00 0.00 0.00 3.77
854 869 0.841289 TCCACGAGTTTTCCCTGGTT 59.159 50.000 0.00 0.00 0.00 3.67
855 870 0.841289 TTCCACGAGTTTTCCCTGGT 59.159 50.000 0.00 0.00 0.00 4.00
856 871 1.880027 CTTTCCACGAGTTTTCCCTGG 59.120 52.381 0.00 0.00 0.00 4.45
857 872 2.808543 CTCTTTCCACGAGTTTTCCCTG 59.191 50.000 0.00 0.00 0.00 4.45
858 873 2.810767 GCTCTTTCCACGAGTTTTCCCT 60.811 50.000 0.00 0.00 0.00 4.20
859 874 1.535896 GCTCTTTCCACGAGTTTTCCC 59.464 52.381 0.00 0.00 0.00 3.97
860 875 2.218603 TGCTCTTTCCACGAGTTTTCC 58.781 47.619 0.00 0.00 0.00 3.13
861 876 3.131396 TCTGCTCTTTCCACGAGTTTTC 58.869 45.455 0.00 0.00 0.00 2.29
862 877 3.194005 TCTGCTCTTTCCACGAGTTTT 57.806 42.857 0.00 0.00 0.00 2.43
863 878 2.910688 TCTGCTCTTTCCACGAGTTT 57.089 45.000 0.00 0.00 0.00 2.66
864 879 2.564947 AGATCTGCTCTTTCCACGAGTT 59.435 45.455 0.00 0.00 0.00 3.01
865 880 2.094286 CAGATCTGCTCTTTCCACGAGT 60.094 50.000 10.38 0.00 29.16 4.18
866 881 2.538437 CAGATCTGCTCTTTCCACGAG 58.462 52.381 10.38 0.00 29.16 4.18
867 882 2.662006 CAGATCTGCTCTTTCCACGA 57.338 50.000 10.38 0.00 29.16 4.35
879 894 1.129917 ATCAGACCTGGGCAGATCTG 58.870 55.000 18.84 18.84 39.99 2.90
880 895 1.129917 CATCAGACCTGGGCAGATCT 58.870 55.000 4.17 0.00 0.00 2.75
881 896 0.108207 CCATCAGACCTGGGCAGATC 59.892 60.000 4.17 0.00 0.00 2.75
882 897 1.351080 CCCATCAGACCTGGGCAGAT 61.351 60.000 0.47 0.68 46.62 2.90
883 898 1.997311 CCCATCAGACCTGGGCAGA 60.997 63.158 0.47 0.00 46.62 4.26
884 899 2.593978 CCCATCAGACCTGGGCAG 59.406 66.667 0.47 0.00 46.62 4.85
888 903 1.225704 GGAAGCCCATCAGACCTGG 59.774 63.158 0.00 0.00 0.00 4.45
889 904 0.329261 TTGGAAGCCCATCAGACCTG 59.671 55.000 0.00 0.00 43.12 4.00
890 905 1.075601 TTTGGAAGCCCATCAGACCT 58.924 50.000 0.00 0.00 43.12 3.85
891 906 1.753073 CATTTGGAAGCCCATCAGACC 59.247 52.381 0.00 0.00 43.12 3.85
892 907 1.135721 GCATTTGGAAGCCCATCAGAC 59.864 52.381 0.00 0.00 43.12 3.51
893 908 1.477553 GCATTTGGAAGCCCATCAGA 58.522 50.000 0.00 0.00 43.12 3.27
894 909 0.101759 CGCATTTGGAAGCCCATCAG 59.898 55.000 0.00 0.00 43.12 2.90
895 910 1.947597 GCGCATTTGGAAGCCCATCA 61.948 55.000 0.30 0.00 43.12 3.07
896 911 1.227060 GCGCATTTGGAAGCCCATC 60.227 57.895 0.30 0.00 43.12 3.51
897 912 1.683365 AGCGCATTTGGAAGCCCAT 60.683 52.632 11.47 0.00 43.12 4.00
898 913 2.283101 AGCGCATTTGGAAGCCCA 60.283 55.556 11.47 0.00 41.64 5.36
899 914 2.182537 CAGCGCATTTGGAAGCCC 59.817 61.111 11.47 0.00 0.00 5.19
900 915 2.182537 CCAGCGCATTTGGAAGCC 59.817 61.111 11.47 0.00 37.96 4.35
901 916 1.444895 CACCAGCGCATTTGGAAGC 60.445 57.895 19.97 0.00 39.08 3.86
902 917 1.213537 CCACCAGCGCATTTGGAAG 59.786 57.895 19.97 11.57 39.08 3.46
903 918 0.611618 ATCCACCAGCGCATTTGGAA 60.612 50.000 22.79 10.46 41.48 3.53
904 919 1.001020 ATCCACCAGCGCATTTGGA 60.001 52.632 21.67 21.67 42.34 3.53
905 920 1.434696 GATCCACCAGCGCATTTGG 59.565 57.895 11.47 11.96 41.60 3.28
906 921 1.063006 CGATCCACCAGCGCATTTG 59.937 57.895 11.47 2.18 0.00 2.32
907 922 3.501396 CGATCCACCAGCGCATTT 58.499 55.556 11.47 0.00 0.00 2.32
915 930 2.613576 TATCCCTGGGCGATCCACCA 62.614 60.000 8.22 3.28 41.46 4.17
916 931 1.415672 TTATCCCTGGGCGATCCACC 61.416 60.000 8.22 0.00 41.46 4.61
917 932 0.472471 TTTATCCCTGGGCGATCCAC 59.528 55.000 8.22 0.00 41.46 4.02
918 933 1.444933 ATTTATCCCTGGGCGATCCA 58.555 50.000 8.22 0.00 44.79 3.41
919 934 2.437413 GAATTTATCCCTGGGCGATCC 58.563 52.381 8.22 0.00 0.00 3.36
920 935 2.076863 CGAATTTATCCCTGGGCGATC 58.923 52.381 8.22 0.00 0.00 3.69
921 936 1.882352 GCGAATTTATCCCTGGGCGAT 60.882 52.381 8.22 0.00 0.00 4.58
922 937 0.534203 GCGAATTTATCCCTGGGCGA 60.534 55.000 8.22 0.00 0.00 5.54
923 938 0.535102 AGCGAATTTATCCCTGGGCG 60.535 55.000 8.22 5.00 0.00 6.13
924 939 1.239347 GAGCGAATTTATCCCTGGGC 58.761 55.000 8.22 0.00 0.00 5.36
925 940 1.421646 AGGAGCGAATTTATCCCTGGG 59.578 52.381 6.33 6.33 33.30 4.45
926 941 2.498167 CAGGAGCGAATTTATCCCTGG 58.502 52.381 0.00 0.00 37.95 4.45
927 942 2.158755 ACCAGGAGCGAATTTATCCCTG 60.159 50.000 0.00 0.00 40.48 4.45
928 943 2.127708 ACCAGGAGCGAATTTATCCCT 58.872 47.619 0.00 0.00 33.30 4.20
929 944 2.640316 ACCAGGAGCGAATTTATCCC 57.360 50.000 0.00 0.00 33.30 3.85
930 945 3.315470 GGAAACCAGGAGCGAATTTATCC 59.685 47.826 0.00 0.00 0.00 2.59
931 946 4.035675 CAGGAAACCAGGAGCGAATTTATC 59.964 45.833 0.00 0.00 0.00 1.75
932 947 3.947834 CAGGAAACCAGGAGCGAATTTAT 59.052 43.478 0.00 0.00 0.00 1.40
933 948 3.343617 CAGGAAACCAGGAGCGAATTTA 58.656 45.455 0.00 0.00 0.00 1.40
934 949 2.162681 CAGGAAACCAGGAGCGAATTT 58.837 47.619 0.00 0.00 0.00 1.82
935 950 1.614317 CCAGGAAACCAGGAGCGAATT 60.614 52.381 0.00 0.00 0.00 2.17
936 951 0.035056 CCAGGAAACCAGGAGCGAAT 60.035 55.000 0.00 0.00 0.00 3.34
937 952 1.374947 CCAGGAAACCAGGAGCGAA 59.625 57.895 0.00 0.00 0.00 4.70
938 953 3.068881 CCAGGAAACCAGGAGCGA 58.931 61.111 0.00 0.00 0.00 4.93
939 954 2.747855 GCCAGGAAACCAGGAGCG 60.748 66.667 3.43 0.00 0.00 5.03
940 955 2.361737 GGCCAGGAAACCAGGAGC 60.362 66.667 0.00 0.00 0.00 4.70
941 956 2.356667 GGGCCAGGAAACCAGGAG 59.643 66.667 4.39 0.00 0.00 3.69
942 957 3.646715 CGGGCCAGGAAACCAGGA 61.647 66.667 4.39 0.00 0.00 3.86
943 958 4.740822 CCGGGCCAGGAAACCAGG 62.741 72.222 18.42 0.00 34.87 4.45
944 959 4.740822 CCCGGGCCAGGAAACCAG 62.741 72.222 25.19 0.70 0.00 4.00
947 962 1.928714 TATTCCCCGGGCCAGGAAAC 61.929 60.000 25.19 0.00 45.03 2.78
948 963 1.619975 TATTCCCCGGGCCAGGAAA 60.620 57.895 25.19 17.02 45.03 3.13
949 964 2.043098 TATTCCCCGGGCCAGGAA 59.957 61.111 25.19 23.21 45.91 3.36
950 965 2.447765 CTATTCCCCGGGCCAGGA 60.448 66.667 25.19 14.17 0.00 3.86
951 966 3.570212 CCTATTCCCCGGGCCAGG 61.570 72.222 17.73 16.13 0.00 4.45
952 967 4.271016 GCCTATTCCCCGGGCCAG 62.271 72.222 17.73 8.46 39.96 4.85
954 969 4.271016 CTGCCTATTCCCCGGGCC 62.271 72.222 17.73 0.00 44.71 5.80
955 970 4.271016 CCTGCCTATTCCCCGGGC 62.271 72.222 17.73 1.42 45.45 6.13
956 971 3.570212 CCCTGCCTATTCCCCGGG 61.570 72.222 15.80 15.80 0.00 5.73
957 972 1.842381 GATCCCTGCCTATTCCCCGG 61.842 65.000 0.00 0.00 0.00 5.73
958 973 1.679898 GATCCCTGCCTATTCCCCG 59.320 63.158 0.00 0.00 0.00 5.73
959 974 1.501654 GGGATCCCTGCCTATTCCCC 61.502 65.000 24.69 0.00 40.20 4.81
960 975 1.501654 GGGGATCCCTGCCTATTCCC 61.502 65.000 30.08 5.65 44.49 3.97
961 976 2.079326 GGGGATCCCTGCCTATTCC 58.921 63.158 30.08 6.44 41.34 3.01
977 992 3.295386 TTTCAGGCAATCCCGGGGG 62.295 63.158 23.50 12.20 39.21 5.40
978 993 2.052104 GTTTCAGGCAATCCCGGGG 61.052 63.158 23.50 6.77 39.21 5.73
979 994 2.052104 GGTTTCAGGCAATCCCGGG 61.052 63.158 16.85 16.85 39.21 5.73
980 995 0.897863 TTGGTTTCAGGCAATCCCGG 60.898 55.000 0.00 0.00 39.21 5.73
981 996 0.965439 TTTGGTTTCAGGCAATCCCG 59.035 50.000 0.00 0.00 39.21 5.14
982 997 2.566724 TCATTTGGTTTCAGGCAATCCC 59.433 45.455 0.00 0.00 0.00 3.85
983 998 3.368739 CCTCATTTGGTTTCAGGCAATCC 60.369 47.826 0.00 0.00 0.00 3.01
984 999 3.853475 CCTCATTTGGTTTCAGGCAATC 58.147 45.455 0.00 0.00 0.00 2.67
985 1000 3.967332 CCTCATTTGGTTTCAGGCAAT 57.033 42.857 0.00 0.00 0.00 3.56
988 1003 3.820595 GCCTCATTTGGTTTCAGGC 57.179 52.632 0.00 0.00 42.87 4.85
989 1004 1.821136 GAGGCCTCATTTGGTTTCAGG 59.179 52.381 28.43 0.00 0.00 3.86
990 1005 2.517959 TGAGGCCTCATTTGGTTTCAG 58.482 47.619 32.00 0.00 34.14 3.02
991 1006 2.673775 TGAGGCCTCATTTGGTTTCA 57.326 45.000 32.00 5.54 34.14 2.69
992 1007 3.321968 ACTTTGAGGCCTCATTTGGTTTC 59.678 43.478 35.42 5.22 39.64 2.78
993 1008 3.070015 CACTTTGAGGCCTCATTTGGTTT 59.930 43.478 35.42 13.18 39.64 3.27
994 1009 2.629617 CACTTTGAGGCCTCATTTGGTT 59.370 45.455 35.42 14.23 39.64 3.67
995 1010 2.158475 TCACTTTGAGGCCTCATTTGGT 60.158 45.455 35.42 25.26 39.64 3.67
996 1011 2.517959 TCACTTTGAGGCCTCATTTGG 58.482 47.619 35.42 24.67 39.64 3.28
997 1012 4.796038 AATCACTTTGAGGCCTCATTTG 57.204 40.909 35.42 28.41 39.64 2.32
998 1013 4.834496 TCAAATCACTTTGAGGCCTCATTT 59.166 37.500 35.42 26.39 44.46 2.32
999 1014 4.410099 TCAAATCACTTTGAGGCCTCATT 58.590 39.130 35.42 22.31 44.46 2.57
1000 1015 4.038271 TCAAATCACTTTGAGGCCTCAT 57.962 40.909 35.42 19.04 44.46 2.90
1001 1016 3.507162 TCAAATCACTTTGAGGCCTCA 57.493 42.857 32.00 32.00 44.46 3.86
1008 1023 7.551974 TGGCAAATTTTCTTCAAATCACTTTGA 59.448 29.630 0.00 0.00 46.92 2.69
1009 1024 7.695820 TGGCAAATTTTCTTCAAATCACTTTG 58.304 30.769 0.00 0.00 42.60 2.77
1010 1025 7.862512 TGGCAAATTTTCTTCAAATCACTTT 57.137 28.000 0.00 0.00 33.60 2.66
1011 1026 7.862512 TTGGCAAATTTTCTTCAAATCACTT 57.137 28.000 0.00 0.00 33.60 3.16
1012 1027 7.467675 GCTTTGGCAAATTTTCTTCAAATCACT 60.468 33.333 13.89 0.00 34.65 3.41
1013 1028 6.634035 GCTTTGGCAAATTTTCTTCAAATCAC 59.366 34.615 13.89 0.00 34.65 3.06
1014 1029 6.238703 GGCTTTGGCAAATTTTCTTCAAATCA 60.239 34.615 13.89 0.00 40.87 2.57
1015 1030 6.144854 GGCTTTGGCAAATTTTCTTCAAATC 58.855 36.000 13.89 0.00 40.87 2.17
1016 1031 5.009911 GGGCTTTGGCAAATTTTCTTCAAAT 59.990 36.000 13.89 0.00 40.87 2.32
1017 1032 4.337836 GGGCTTTGGCAAATTTTCTTCAAA 59.662 37.500 13.89 0.00 40.87 2.69
1018 1033 3.882288 GGGCTTTGGCAAATTTTCTTCAA 59.118 39.130 13.89 0.00 40.87 2.69
1019 1034 3.118112 TGGGCTTTGGCAAATTTTCTTCA 60.118 39.130 13.89 3.16 40.87 3.02
1020 1035 3.250762 GTGGGCTTTGGCAAATTTTCTTC 59.749 43.478 13.89 0.68 40.87 2.87
1021 1036 3.213506 GTGGGCTTTGGCAAATTTTCTT 58.786 40.909 13.89 0.00 40.87 2.52
1022 1037 2.487086 GGTGGGCTTTGGCAAATTTTCT 60.487 45.455 13.89 0.00 40.87 2.52
1023 1038 1.879380 GGTGGGCTTTGGCAAATTTTC 59.121 47.619 13.89 4.69 40.87 2.29
1024 1039 1.213926 TGGTGGGCTTTGGCAAATTTT 59.786 42.857 13.89 0.00 40.87 1.82
1025 1040 0.842635 TGGTGGGCTTTGGCAAATTT 59.157 45.000 13.89 0.00 40.87 1.82
1026 1041 0.108396 GTGGTGGGCTTTGGCAAATT 59.892 50.000 13.89 0.00 40.87 1.82
1027 1042 1.754107 GTGGTGGGCTTTGGCAAAT 59.246 52.632 13.89 0.00 40.87 2.32
1028 1043 2.790791 CGTGGTGGGCTTTGGCAAA 61.791 57.895 12.79 12.79 40.87 3.68
1029 1044 3.222855 CGTGGTGGGCTTTGGCAA 61.223 61.111 0.00 0.00 40.87 4.52
1030 1045 4.196778 TCGTGGTGGGCTTTGGCA 62.197 61.111 0.00 0.00 40.87 4.92
1031 1046 3.670377 GTCGTGGTGGGCTTTGGC 61.670 66.667 0.00 0.00 37.82 4.52
1032 1047 2.203280 TGTCGTGGTGGGCTTTGG 60.203 61.111 0.00 0.00 0.00 3.28
1033 1048 1.507141 GACTGTCGTGGTGGGCTTTG 61.507 60.000 0.00 0.00 0.00 2.77
1034 1049 1.227853 GACTGTCGTGGTGGGCTTT 60.228 57.895 0.00 0.00 0.00 3.51
1046 1061 4.459089 GGCTGGGCCTCGACTGTC 62.459 72.222 4.53 0.00 46.69 3.51
1098 1113 1.704007 GGAATGGAGAGGAGCAGGGG 61.704 65.000 0.00 0.00 0.00 4.79
1110 1125 2.429383 GGGGGAGAAGGATAGGAATGGA 60.429 54.545 0.00 0.00 0.00 3.41
1111 1126 1.988846 GGGGGAGAAGGATAGGAATGG 59.011 57.143 0.00 0.00 0.00 3.16
1249 1288 0.384309 GGGCATCGTCGTACTGATGA 59.616 55.000 18.27 14.55 46.35 2.92
1424 1522 7.545362 AATCATCTATCAACTGAAACCTTCG 57.455 36.000 0.00 0.00 0.00 3.79
1453 1551 7.682787 ATCTTGGATCATAAGACCAGTAAGT 57.317 36.000 12.24 0.00 37.03 2.24
1454 1552 9.868277 GATATCTTGGATCATAAGACCAGTAAG 57.132 37.037 12.24 0.00 37.03 2.34
1455 1553 9.607333 AGATATCTTGGATCATAAGACCAGTAA 57.393 33.333 12.24 0.00 37.03 2.24
1456 1554 9.249053 GAGATATCTTGGATCATAAGACCAGTA 57.751 37.037 6.70 4.08 37.03 2.74
1457 1555 7.732140 TGAGATATCTTGGATCATAAGACCAGT 59.268 37.037 6.70 2.34 37.03 4.00
1495 2605 2.472488 CGCTGTTGCAAAACAATTCTCC 59.528 45.455 0.00 0.00 41.27 3.71
1502 2612 1.742831 AGAAGACGCTGTTGCAAAACA 59.257 42.857 0.00 0.00 39.64 2.83
1555 2666 4.347876 TGATCCCAGAAACAGAGACAAAGA 59.652 41.667 0.00 0.00 0.00 2.52
1558 2669 3.648067 ACTGATCCCAGAAACAGAGACAA 59.352 43.478 0.00 0.00 43.02 3.18
1586 2697 1.966451 CTTGCCGGGGAGTGACAAC 60.966 63.158 2.18 0.00 0.00 3.32
1608 2719 1.066573 CCTGTCTACCTGGTTCTGCTG 60.067 57.143 3.84 0.00 0.00 4.41
1609 2720 1.270907 CCTGTCTACCTGGTTCTGCT 58.729 55.000 3.84 0.00 0.00 4.24
1610 2721 0.391793 GCCTGTCTACCTGGTTCTGC 60.392 60.000 3.84 0.00 34.73 4.26
1614 2725 0.693049 CAAGGCCTGTCTACCTGGTT 59.307 55.000 5.69 0.00 36.07 3.67
1661 2772 1.630369 AGCAAGCACTAGAACATGGGA 59.370 47.619 0.00 0.00 0.00 4.37
1664 2775 4.565962 CACTCTAGCAAGCACTAGAACATG 59.434 45.833 11.01 0.00 46.08 3.21
1732 2843 5.450965 CCCATCTGAACCAAATATTGTCTGC 60.451 44.000 0.00 0.00 0.00 4.26
1764 2875 0.621609 AAATAGGGGTTACTGGCGCA 59.378 50.000 10.83 0.00 0.00 6.09
1765 2876 1.758936 AAAATAGGGGTTACTGGCGC 58.241 50.000 0.00 0.00 0.00 6.53
1792 2904 1.603802 ACTGACAATTTCTGCCACACG 59.396 47.619 0.00 0.00 0.00 4.49
1833 2945 4.442706 CCTCTGGTGCTTGTATAATTCGT 58.557 43.478 0.00 0.00 0.00 3.85
1835 2947 4.137543 CCCCTCTGGTGCTTGTATAATTC 58.862 47.826 0.00 0.00 0.00 2.17
1838 2950 2.771943 CTCCCCTCTGGTGCTTGTATAA 59.228 50.000 0.00 0.00 34.77 0.98
1840 2952 1.207791 CTCCCCTCTGGTGCTTGTAT 58.792 55.000 0.00 0.00 34.77 2.29
1860 2972 6.612247 TTTGTGTTGTACTACAATCTGTGG 57.388 37.500 11.77 0.00 40.59 4.17
1861 2973 8.087982 AGATTTGTGTTGTACTACAATCTGTG 57.912 34.615 17.00 0.00 40.59 3.66
1862 2974 7.387948 GGAGATTTGTGTTGTACTACAATCTGT 59.612 37.037 20.53 5.46 40.59 3.41
1875 2987 8.517878 AGTTTGAAGATATGGAGATTTGTGTTG 58.482 33.333 0.00 0.00 0.00 3.33
1888 3000 3.873910 ACGGGGACAGTTTGAAGATATG 58.126 45.455 0.00 0.00 0.00 1.78
1890 3002 5.424757 CATTACGGGGACAGTTTGAAGATA 58.575 41.667 0.00 0.00 0.00 1.98
2074 3193 6.431278 TGTGAAAATGTTACATGTGGTTACG 58.569 36.000 9.11 0.00 31.77 3.18
2080 3199 9.635632 GACAAAAATGTGAAAATGTTACATGTG 57.364 29.630 9.11 0.00 35.39 3.21
2115 4347 2.436292 CGACGACGAGGAGGAGGT 60.436 66.667 0.00 0.00 42.66 3.85
2117 4349 2.800581 CGACGACGACGAGGAGGAG 61.801 68.421 15.32 0.00 42.66 3.69
2118 4350 2.812609 CGACGACGACGAGGAGGA 60.813 66.667 15.32 0.00 42.66 3.71
2271 4521 6.659824 TCTTCTTAAGGTCCTCAAACTTGTT 58.340 36.000 1.85 0.00 0.00 2.83
2288 4538 1.834263 GCAGCCTCCTCCTTCTTCTTA 59.166 52.381 0.00 0.00 0.00 2.10
2328 4593 4.817909 GGATCCCGGGGTGGAGGT 62.818 72.222 23.50 0.00 42.00 3.85
2360 4625 1.482593 GCAGCAGCTAGTTAAGGGAGA 59.517 52.381 0.00 0.00 37.91 3.71
2362 4627 0.541863 GGCAGCAGCTAGTTAAGGGA 59.458 55.000 0.00 0.00 41.70 4.20
2364 4629 1.484240 AGAGGCAGCAGCTAGTTAAGG 59.516 52.381 0.00 0.00 41.70 2.69
2365 4630 2.167281 TGAGAGGCAGCAGCTAGTTAAG 59.833 50.000 0.00 0.00 41.70 1.85
2366 4631 2.179427 TGAGAGGCAGCAGCTAGTTAA 58.821 47.619 0.00 0.00 41.70 2.01
2367 4632 1.852633 TGAGAGGCAGCAGCTAGTTA 58.147 50.000 0.00 0.00 41.70 2.24
2368 4633 0.979665 TTGAGAGGCAGCAGCTAGTT 59.020 50.000 0.00 0.00 41.70 2.24
2369 4634 0.248843 GTTGAGAGGCAGCAGCTAGT 59.751 55.000 0.00 0.00 41.70 2.57
2370 4635 0.461693 GGTTGAGAGGCAGCAGCTAG 60.462 60.000 0.00 0.00 41.70 3.42
2372 4637 2.222727 AGGTTGAGAGGCAGCAGCT 61.223 57.895 0.00 0.00 41.70 4.24
2552 5069 3.003480 AGCGGAGACTGTATTTTGAAGC 58.997 45.455 0.00 0.00 0.00 3.86
2620 5166 8.667463 CAAAACTGAAGGTCAAACATCAAAAAT 58.333 29.630 0.00 0.00 0.00 1.82
2625 5171 4.159321 TGCAAAACTGAAGGTCAAACATCA 59.841 37.500 0.00 0.00 0.00 3.07
2722 5275 4.878968 TGGTAGAGAGAGAGAGAGAGAGA 58.121 47.826 0.00 0.00 0.00 3.10
2769 5322 5.105797 GCATTCATGTTCCAACCTATTCACA 60.106 40.000 0.00 0.00 0.00 3.58
2770 5323 5.105797 TGCATTCATGTTCCAACCTATTCAC 60.106 40.000 0.00 0.00 0.00 3.18
2776 5329 3.833650 TGAATGCATTCATGTTCCAACCT 59.166 39.130 33.08 0.00 41.51 3.50
2793 5346 6.286758 AGGATGCAGTCTATTACAGTGAATG 58.713 40.000 0.00 0.00 0.00 2.67
2817 5373 3.851976 TCTTGGGAGATCATGGAAGGAAA 59.148 43.478 0.00 0.00 0.00 3.13
2842 5448 4.643387 AGCCAACACACGCCCCTC 62.643 66.667 0.00 0.00 0.00 4.30
2907 6103 4.159244 AGCGGTAAATTTGTATGCCCTA 57.841 40.909 0.00 0.00 0.00 3.53
2962 6158 2.414658 TTTCCCTGGCCGTTGGGTAC 62.415 60.000 22.59 0.00 43.74 3.34
2963 6159 1.717038 TTTTCCCTGGCCGTTGGGTA 61.717 55.000 22.59 13.92 43.74 3.69
3012 6208 2.039879 TCCTTCCTTCCTTTTTCCGGAG 59.960 50.000 3.34 0.00 0.00 4.63
3036 6232 5.163864 CCTTTCATTCAATCACACGATCGAA 60.164 40.000 24.34 2.75 29.33 3.71
3040 6236 5.707298 AGTTCCTTTCATTCAATCACACGAT 59.293 36.000 0.00 0.00 0.00 3.73
3060 6268 5.582665 AGCAGAATCTCGTTGGATTTAGTTC 59.417 40.000 0.00 0.00 36.24 3.01
3126 6334 4.854361 TGTTCTCTCGTACGTCTGTATC 57.146 45.455 16.05 3.04 32.11 2.24
3127 6335 5.814764 ATTGTTCTCTCGTACGTCTGTAT 57.185 39.130 16.05 0.00 32.11 2.29
3128 6336 6.726258 TTATTGTTCTCTCGTACGTCTGTA 57.274 37.500 16.05 0.00 0.00 2.74
3129 6337 5.618056 TTATTGTTCTCTCGTACGTCTGT 57.382 39.130 16.05 0.00 0.00 3.41
3130 6338 5.285607 GGTTTATTGTTCTCTCGTACGTCTG 59.714 44.000 16.05 7.21 0.00 3.51
3131 6339 5.048504 TGGTTTATTGTTCTCTCGTACGTCT 60.049 40.000 16.05 0.00 0.00 4.18
3132 6340 5.156355 TGGTTTATTGTTCTCTCGTACGTC 58.844 41.667 16.05 1.43 0.00 4.34
3133 6341 5.125100 TGGTTTATTGTTCTCTCGTACGT 57.875 39.130 16.05 0.00 0.00 3.57
3134 6342 4.031426 GCTGGTTTATTGTTCTCTCGTACG 59.969 45.833 9.53 9.53 0.00 3.67
3135 6343 4.927425 TGCTGGTTTATTGTTCTCTCGTAC 59.073 41.667 0.00 0.00 0.00 3.67
3136 6344 5.142061 TGCTGGTTTATTGTTCTCTCGTA 57.858 39.130 0.00 0.00 0.00 3.43
3137 6345 3.997021 CTGCTGGTTTATTGTTCTCTCGT 59.003 43.478 0.00 0.00 0.00 4.18
3287 6534 3.071206 ACCAGAGCCGAGCACGAT 61.071 61.111 4.70 0.00 42.66 3.73
3301 6548 0.994247 ATGAGCATGGGAACTCACCA 59.006 50.000 3.26 0.00 45.19 4.17
3327 6577 0.824109 TAGATGTGGACCGAAGCTGG 59.176 55.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.