Multiple sequence alignment - TraesCS1B01G015000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G015000 chr1B 100.000 2658 0 0 1 2658 7292786 7295443 0.000000e+00 4909.0
1 TraesCS1B01G015000 chr1B 79.716 1410 231 31 65 1449 5988870 5990249 0.000000e+00 968.0
2 TraesCS1B01G015000 chr1B 77.241 1740 302 60 74 1768 5697804 5699494 0.000000e+00 933.0
3 TraesCS1B01G015000 chr1B 80.092 1306 213 24 74 1366 5954366 5955637 0.000000e+00 928.0
4 TraesCS1B01G015000 chr1B 77.400 1646 283 50 1 1608 6063279 6064873 0.000000e+00 896.0
5 TraesCS1B01G015000 chr1B 77.357 1612 278 48 24 1598 5854441 5856002 0.000000e+00 874.0
6 TraesCS1B01G015000 chr1B 77.304 1595 277 52 65 1610 6484872 6483314 0.000000e+00 861.0
7 TraesCS1B01G015000 chr1B 77.344 1408 251 32 204 1589 6835114 6833753 0.000000e+00 771.0
8 TraesCS1B01G015000 chr1B 79.693 911 153 22 74 980 7340079 7340961 1.740000e-176 628.0
9 TraesCS1B01G015000 chr1B 78.483 567 96 21 1040 1589 22721369 22720812 5.450000e-92 348.0
10 TraesCS1B01G015000 chr1B 80.092 437 59 14 1885 2293 629847958 629848394 1.550000e-77 300.0
11 TraesCS1B01G015000 chr1B 88.182 220 25 1 2148 2366 17146606 17146825 7.300000e-66 261.0
12 TraesCS1B01G015000 chr1B 82.578 287 27 13 1884 2148 17146214 17146499 5.720000e-57 231.0
13 TraesCS1B01G015000 chr1B 87.500 168 19 2 2493 2658 7707936 7707769 2.700000e-45 193.0
14 TraesCS1B01G015000 chr1B 87.143 140 15 3 1976 2112 7925713 7925574 3.540000e-34 156.0
15 TraesCS1B01G015000 chr1B 90.217 92 9 0 1976 2067 7128045 7127954 1.290000e-23 121.0
16 TraesCS1B01G015000 chr1B 76.471 204 27 14 1508 1706 5742148 5742335 1.010000e-14 91.6
17 TraesCS1B01G015000 chr1B 90.769 65 4 2 2476 2539 6136631 6136694 4.710000e-13 86.1
18 TraesCS1B01G015000 chr1B 90.698 43 4 0 1881 1923 6117415 6117457 1.030000e-04 58.4
19 TraesCS1B01G015000 chr1A 79.374 1629 248 46 1 1604 6009861 6008296 0.000000e+00 1066.0
20 TraesCS1B01G015000 chr1A 79.182 1393 226 38 1 1367 4500576 4501930 0.000000e+00 907.0
21 TraesCS1B01G015000 chr1A 78.907 1427 221 47 1 1390 4504787 4506170 0.000000e+00 894.0
22 TraesCS1B01G015000 chr1A 80.125 1122 176 28 65 1169 5503119 5502028 0.000000e+00 793.0
23 TraesCS1B01G015000 chr1A 86.373 477 62 3 65 539 6338385 6337910 3.920000e-143 518.0
24 TraesCS1B01G015000 chr1A 84.462 502 54 11 1884 2366 4249367 4249863 8.610000e-130 473.0
25 TraesCS1B01G015000 chr1A 75.976 999 186 37 621 1601 4553524 4554486 1.440000e-127 466.0
26 TraesCS1B01G015000 chr1A 78.187 761 144 14 627 1367 6337847 6337089 1.440000e-127 466.0
27 TraesCS1B01G015000 chr1A 80.732 519 54 24 1881 2366 5993195 5992690 1.940000e-96 363.0
28 TraesCS1B01G015000 chr1A 83.172 309 29 11 1881 2166 6052990 6052682 7.300000e-66 261.0
29 TraesCS1B01G015000 chr1A 90.000 160 16 0 2492 2651 4249882 4250041 9.640000e-50 207.0
30 TraesCS1B01G015000 chr1A 96.491 57 2 0 2428 2484 238124969 238125025 7.830000e-16 95.3
31 TraesCS1B01G015000 chr1D 77.848 1747 288 46 1 1709 74955 73270 0.000000e+00 990.0
32 TraesCS1B01G015000 chr1D 85.075 402 45 11 1976 2366 4232802 4232405 1.920000e-106 396.0
33 TraesCS1B01G015000 chr1D 85.764 288 40 1 2080 2366 5013219 5012932 1.200000e-78 303.0
34 TraesCS1B01G015000 chr1D 86.885 122 7 5 2474 2593 5012901 5012787 7.720000e-26 128.0
35 TraesCS1B01G015000 chrUn 85.714 175 22 1 2484 2658 76656086 76655915 5.840000e-42 182.0
36 TraesCS1B01G015000 chrUn 96.491 57 2 0 2428 2484 86452676 86452732 7.830000e-16 95.3
37 TraesCS1B01G015000 chrUn 96.491 57 2 0 2428 2484 86458676 86458732 7.830000e-16 95.3
38 TraesCS1B01G015000 chrUn 96.491 57 2 0 2428 2484 222676598 222676542 7.830000e-16 95.3
39 TraesCS1B01G015000 chrUn 96.491 57 2 0 2428 2484 422321297 422321241 7.830000e-16 95.3
40 TraesCS1B01G015000 chr7D 96.491 57 2 0 2428 2484 606856026 606855970 7.830000e-16 95.3
41 TraesCS1B01G015000 chr6B 96.491 57 2 0 2428 2484 388016588 388016644 7.830000e-16 95.3
42 TraesCS1B01G015000 chr6B 96.491 57 2 0 2428 2484 596632404 596632460 7.830000e-16 95.3
43 TraesCS1B01G015000 chr2D 96.491 57 2 0 2428 2484 322914726 322914782 7.830000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G015000 chr1B 7292786 7295443 2657 False 4909.0 4909 100.0000 1 2658 1 chr1B.!!$F9 2657
1 TraesCS1B01G015000 chr1B 5988870 5990249 1379 False 968.0 968 79.7160 65 1449 1 chr1B.!!$F5 1384
2 TraesCS1B01G015000 chr1B 5697804 5699494 1690 False 933.0 933 77.2410 74 1768 1 chr1B.!!$F1 1694
3 TraesCS1B01G015000 chr1B 5954366 5955637 1271 False 928.0 928 80.0920 74 1366 1 chr1B.!!$F4 1292
4 TraesCS1B01G015000 chr1B 6063279 6064873 1594 False 896.0 896 77.4000 1 1608 1 chr1B.!!$F6 1607
5 TraesCS1B01G015000 chr1B 5854441 5856002 1561 False 874.0 874 77.3570 24 1598 1 chr1B.!!$F3 1574
6 TraesCS1B01G015000 chr1B 6483314 6484872 1558 True 861.0 861 77.3040 65 1610 1 chr1B.!!$R1 1545
7 TraesCS1B01G015000 chr1B 6833753 6835114 1361 True 771.0 771 77.3440 204 1589 1 chr1B.!!$R2 1385
8 TraesCS1B01G015000 chr1B 7340079 7340961 882 False 628.0 628 79.6930 74 980 1 chr1B.!!$F10 906
9 TraesCS1B01G015000 chr1B 22720812 22721369 557 True 348.0 348 78.4830 1040 1589 1 chr1B.!!$R6 549
10 TraesCS1B01G015000 chr1B 17146214 17146825 611 False 246.0 261 85.3800 1884 2366 2 chr1B.!!$F12 482
11 TraesCS1B01G015000 chr1A 6008296 6009861 1565 True 1066.0 1066 79.3740 1 1604 1 chr1A.!!$R3 1603
12 TraesCS1B01G015000 chr1A 4500576 4506170 5594 False 900.5 907 79.0445 1 1390 2 chr1A.!!$F4 1389
13 TraesCS1B01G015000 chr1A 5502028 5503119 1091 True 793.0 793 80.1250 65 1169 1 chr1A.!!$R1 1104
14 TraesCS1B01G015000 chr1A 6337089 6338385 1296 True 492.0 518 82.2800 65 1367 2 chr1A.!!$R5 1302
15 TraesCS1B01G015000 chr1A 4553524 4554486 962 False 466.0 466 75.9760 621 1601 1 chr1A.!!$F1 980
16 TraesCS1B01G015000 chr1A 5992690 5993195 505 True 363.0 363 80.7320 1881 2366 1 chr1A.!!$R2 485
17 TraesCS1B01G015000 chr1A 4249367 4250041 674 False 340.0 473 87.2310 1884 2651 2 chr1A.!!$F3 767
18 TraesCS1B01G015000 chr1D 73270 74955 1685 True 990.0 990 77.8480 1 1709 1 chr1D.!!$R1 1708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 659 0.034896 AGATGTTCAACGTTCCGGCT 59.965 50.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2476 6497 0.032678 AACAGGAGCTGACGAGTGTG 59.967 55.0 0.0 0.0 35.18 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.290710 TGGAAAACTTGCAGAGCTTTCT 58.709 40.909 16.86 0.00 39.38 2.52
50 51 0.749049 CTGAGATGGGATGCAGTCGA 59.251 55.000 0.00 0.00 0.00 4.20
53 54 0.467384 AGATGGGATGCAGTCGAAGG 59.533 55.000 0.00 0.00 0.00 3.46
54 55 0.533755 GATGGGATGCAGTCGAAGGG 60.534 60.000 0.00 0.00 0.00 3.95
55 56 0.982852 ATGGGATGCAGTCGAAGGGA 60.983 55.000 0.00 0.00 0.00 4.20
56 57 1.153349 GGGATGCAGTCGAAGGGAC 60.153 63.158 0.00 0.00 46.45 4.46
69 70 3.192844 TCGAAGGGACTCATGTAGAACAC 59.807 47.826 0.00 0.00 38.49 3.32
93 94 4.384056 TGTTCTTTCCTCTGCTTGAGAAG 58.616 43.478 8.51 5.90 45.39 2.85
130 131 9.660544 AGAAATGCCCAAAGGTAATAGATTTAT 57.339 29.630 0.00 0.00 34.57 1.40
147 148 9.905713 ATAGATTTATCTGAAGCACCAAAACTA 57.094 29.630 2.51 0.00 37.76 2.24
186 187 4.226427 AGATGGCAAGCAAGAGATGTTA 57.774 40.909 0.00 0.00 0.00 2.41
187 188 4.789807 AGATGGCAAGCAAGAGATGTTAT 58.210 39.130 0.00 0.00 0.00 1.89
188 189 4.579340 AGATGGCAAGCAAGAGATGTTATG 59.421 41.667 0.00 0.00 0.00 1.90
192 193 4.418392 GCAAGCAAGAGATGTTATGTTGG 58.582 43.478 0.00 0.00 0.00 3.77
251 252 6.942532 ACTGAAGCTAGAAGACATAGAGAG 57.057 41.667 0.00 0.00 0.00 3.20
254 255 7.283127 ACTGAAGCTAGAAGACATAGAGAGAAG 59.717 40.741 0.00 0.00 0.00 2.85
265 266 2.143876 AGAGAGAAGGTCAGAGGCTC 57.856 55.000 6.34 6.34 0.00 4.70
275 276 2.157738 GTCAGAGGCTCAATGCACTTT 58.842 47.619 18.26 0.00 45.15 2.66
278 279 4.005650 TCAGAGGCTCAATGCACTTTAAG 58.994 43.478 18.26 0.00 45.15 1.85
294 295 1.999648 TAAGTGTACCGGTGGACAGT 58.000 50.000 19.93 14.93 0.00 3.55
297 298 2.532843 AGTGTACCGGTGGACAGTAAT 58.467 47.619 19.93 0.00 0.00 1.89
309 310 5.888161 GGTGGACAGTAATGAGAAATGGAAT 59.112 40.000 0.00 0.00 0.00 3.01
318 319 9.917887 AGTAATGAGAAATGGAATCAGAAATCT 57.082 29.630 0.00 0.00 0.00 2.40
407 409 7.284074 TGGGACTATTTTGTACACTTGAAGAA 58.716 34.615 0.00 0.00 0.00 2.52
495 497 5.901853 TCCTTGAGGACATCAGTGATTAGAT 59.098 40.000 1.86 0.00 39.78 1.98
501 503 3.812053 GACATCAGTGATTAGATGGTGCC 59.188 47.826 1.86 0.00 44.50 5.01
517 519 1.667724 GTGCCGAAATCTGACTGGATG 59.332 52.381 0.00 0.00 0.00 3.51
523 525 0.745845 AATCTGACTGGATGCGCACC 60.746 55.000 14.90 17.25 0.00 5.01
580 582 3.763671 CCTGCCAGGTTTGGTGAC 58.236 61.111 1.39 0.00 46.80 3.67
581 583 1.151450 CCTGCCAGGTTTGGTGACT 59.849 57.895 1.39 0.00 46.80 3.41
582 584 0.890996 CCTGCCAGGTTTGGTGACTC 60.891 60.000 1.39 0.00 46.80 3.36
583 585 0.109342 CTGCCAGGTTTGGTGACTCT 59.891 55.000 0.00 0.00 46.80 3.24
584 586 0.550914 TGCCAGGTTTGGTGACTCTT 59.449 50.000 0.00 0.00 46.80 2.85
585 587 0.954452 GCCAGGTTTGGTGACTCTTG 59.046 55.000 0.00 0.00 46.80 3.02
586 588 1.476833 GCCAGGTTTGGTGACTCTTGA 60.477 52.381 0.00 0.00 46.80 3.02
587 589 2.498167 CCAGGTTTGGTGACTCTTGAG 58.502 52.381 0.00 0.00 39.79 3.02
588 590 1.876156 CAGGTTTGGTGACTCTTGAGC 59.124 52.381 0.00 0.00 0.00 4.26
589 591 1.490490 AGGTTTGGTGACTCTTGAGCA 59.510 47.619 0.00 0.00 0.00 4.26
590 592 1.604278 GGTTTGGTGACTCTTGAGCAC 59.396 52.381 13.06 13.06 0.00 4.40
591 593 2.565841 GTTTGGTGACTCTTGAGCACT 58.434 47.619 17.62 0.00 33.25 4.40
592 594 2.245159 TTGGTGACTCTTGAGCACTG 57.755 50.000 17.62 0.00 33.25 3.66
593 595 1.123077 TGGTGACTCTTGAGCACTGT 58.877 50.000 17.62 0.00 33.25 3.55
594 596 1.486310 TGGTGACTCTTGAGCACTGTT 59.514 47.619 17.62 0.00 33.25 3.16
595 597 2.092968 TGGTGACTCTTGAGCACTGTTT 60.093 45.455 17.62 0.00 33.25 2.83
596 598 2.545946 GGTGACTCTTGAGCACTGTTTC 59.454 50.000 17.62 2.01 33.25 2.78
597 599 3.198068 GTGACTCTTGAGCACTGTTTCA 58.802 45.455 13.73 1.28 0.00 2.69
598 600 3.623060 GTGACTCTTGAGCACTGTTTCAA 59.377 43.478 13.73 4.89 32.75 2.69
599 601 4.094887 GTGACTCTTGAGCACTGTTTCAAA 59.905 41.667 13.73 0.00 33.30 2.69
600 602 4.094887 TGACTCTTGAGCACTGTTTCAAAC 59.905 41.667 0.00 0.00 33.30 2.93
601 603 4.265073 ACTCTTGAGCACTGTTTCAAACT 58.735 39.130 1.10 0.00 33.30 2.66
602 604 4.702131 ACTCTTGAGCACTGTTTCAAACTT 59.298 37.500 1.10 0.00 33.30 2.66
603 605 5.183904 ACTCTTGAGCACTGTTTCAAACTTT 59.816 36.000 1.10 0.00 33.30 2.66
604 606 5.401550 TCTTGAGCACTGTTTCAAACTTTG 58.598 37.500 1.10 0.00 33.30 2.77
617 619 7.915397 TGTTTCAAACTTTGCTCTTGAGTTATC 59.085 33.333 1.10 0.00 33.54 1.75
657 659 0.034896 AGATGTTCAACGTTCCGGCT 59.965 50.000 0.00 0.00 0.00 5.52
687 689 1.003580 AGCATGGAGATTTGGTCGTGT 59.996 47.619 0.00 0.00 0.00 4.49
726 728 1.444895 CGGCAAGCAACAAGGCATC 60.445 57.895 0.00 0.00 35.83 3.91
731 733 1.884579 CAAGCAACAAGGCATCTCAGT 59.115 47.619 0.00 0.00 35.83 3.41
778 780 3.434319 CAATCGTGCCCGCAGCTT 61.434 61.111 0.00 0.00 44.23 3.74
787 789 0.179073 GCCCGCAGCTTTATCAGAGA 60.179 55.000 0.00 0.00 38.99 3.10
800 805 1.870064 TCAGAGATGCCATCCTCACA 58.130 50.000 0.00 0.00 32.07 3.58
832 837 5.699915 CACTTCTGTCCATGCCTAGAATATG 59.300 44.000 0.00 0.00 0.00 1.78
844 849 7.626999 TGCCTAGAATATGTAGGGTTGTATT 57.373 36.000 11.65 0.00 38.03 1.89
859 864 7.519927 AGGGTTGTATTACTGTGGAAGTTTAA 58.480 34.615 0.00 0.00 40.56 1.52
885 890 4.026052 CAGTTTTAAATCTGCCCCCATCT 58.974 43.478 12.18 0.00 0.00 2.90
913 918 4.218417 AGGCCATATTTATTAAAGGCTGCG 59.782 41.667 5.01 0.00 41.71 5.18
919 924 8.177663 CCATATTTATTAAAGGCTGCGATAGTG 58.822 37.037 0.00 0.00 39.35 2.74
927 932 2.496070 AGGCTGCGATAGTGTTCAAGTA 59.504 45.455 0.00 0.00 39.35 2.24
941 946 5.292101 GTGTTCAAGTACTATCATGTCAGCC 59.708 44.000 0.00 0.00 0.00 4.85
945 950 0.679505 TACTATCATGTCAGCCGGGC 59.320 55.000 12.11 12.11 0.00 6.13
984 989 6.536582 CAGAAGTCACTACCTCCATAAATGTG 59.463 42.308 0.00 0.00 0.00 3.21
986 1003 4.783227 AGTCACTACCTCCATAAATGTGGT 59.217 41.667 9.03 9.03 40.27 4.16
991 1008 6.098409 CACTACCTCCATAAATGTGGTAGAGT 59.902 42.308 27.70 16.62 45.51 3.24
1004 1027 6.121776 TGTGGTAGAGTAATCAACAATGGT 57.878 37.500 0.00 0.00 0.00 3.55
1008 1031 5.462398 GGTAGAGTAATCAACAATGGTAGCG 59.538 44.000 0.00 0.00 0.00 4.26
1042 1068 3.557898 GCATTCACTTCCTCCTTGTCTCA 60.558 47.826 0.00 0.00 0.00 3.27
1044 1070 4.342862 TTCACTTCCTCCTTGTCTCAAG 57.657 45.455 2.90 2.90 0.00 3.02
1052 1078 6.537453 TCCTCCTTGTCTCAAGATTCTAAG 57.463 41.667 10.54 0.00 0.00 2.18
1080 1109 2.652095 ATGTGCTGGCATGTTGGGC 61.652 57.895 0.00 0.00 0.00 5.36
1084 1113 3.136123 CTGGCATGTTGGGCGGAG 61.136 66.667 0.00 0.00 41.95 4.63
1125 1154 0.390998 TCATGGAACTGCGCATTCGA 60.391 50.000 12.24 14.39 38.10 3.71
1160 1189 1.728971 GACATCGCTGGAGTTTCTGTG 59.271 52.381 0.00 0.00 0.00 3.66
1161 1190 1.070758 ACATCGCTGGAGTTTCTGTGT 59.929 47.619 0.00 0.00 0.00 3.72
1212 1242 3.192541 TGTCTTGAAAGCTGCAGTACA 57.807 42.857 16.64 7.78 0.00 2.90
1227 1257 2.439507 CAGTACATTGGCATCCCTACCT 59.560 50.000 0.00 0.00 0.00 3.08
1238 1268 1.410004 TCCCTACCTAATGAGCCACG 58.590 55.000 0.00 0.00 0.00 4.94
1270 1300 5.220815 GGATCTCTCAAGCAGCTTGTAATTG 60.221 44.000 30.16 18.08 41.66 2.32
1335 1371 1.754803 CAACTGGGCAGCATTGATGAT 59.245 47.619 6.01 0.00 0.00 2.45
1371 1417 3.250762 CCCGTTATGAAGGTATGCACATG 59.749 47.826 0.00 0.00 0.00 3.21
1381 1435 5.435686 AGGTATGCACATGTTCCTTTCTA 57.564 39.130 0.00 0.00 0.00 2.10
1382 1436 6.006275 AGGTATGCACATGTTCCTTTCTAT 57.994 37.500 0.00 0.00 0.00 1.98
1383 1437 6.058183 AGGTATGCACATGTTCCTTTCTATC 58.942 40.000 0.00 0.00 0.00 2.08
1384 1438 5.822519 GGTATGCACATGTTCCTTTCTATCA 59.177 40.000 0.00 0.00 0.00 2.15
1391 1445 5.895534 ACATGTTCCTTTCTATCATTGCCAT 59.104 36.000 0.00 0.00 0.00 4.40
1393 1448 6.942532 TGTTCCTTTCTATCATTGCCATAC 57.057 37.500 0.00 0.00 0.00 2.39
1394 1449 5.527214 TGTTCCTTTCTATCATTGCCATACG 59.473 40.000 0.00 0.00 0.00 3.06
1395 1450 4.065088 TCCTTTCTATCATTGCCATACGC 58.935 43.478 0.00 0.00 38.31 4.42
1492 1570 8.945057 GCCATGTGGTAAAAATTTTCATGTTAT 58.055 29.630 19.83 2.74 37.57 1.89
1541 1626 2.950975 TCATTTGTGATGTGTGCAGTGT 59.049 40.909 0.00 0.00 0.00 3.55
1543 1628 3.865011 TTTGTGATGTGTGCAGTGTTT 57.135 38.095 0.00 0.00 0.00 2.83
1567 1661 4.441356 GCACTCAAACCAAAGACATGGAAA 60.441 41.667 0.00 0.00 43.54 3.13
1568 1662 5.659463 CACTCAAACCAAAGACATGGAAAA 58.341 37.500 0.00 0.00 43.54 2.29
1620 1714 4.426112 CGCTCGACAGGCTGCTCA 62.426 66.667 15.89 0.00 0.00 4.26
1621 1715 2.508887 GCTCGACAGGCTGCTCAG 60.509 66.667 15.89 8.58 0.00 3.35
1622 1716 2.183811 CTCGACAGGCTGCTCAGG 59.816 66.667 15.89 0.00 0.00 3.86
1663 2109 1.279496 ACATGCAGGAGTAAGCAGGA 58.721 50.000 4.84 0.00 44.53 3.86
1665 2111 1.065926 CATGCAGGAGTAAGCAGGACA 60.066 52.381 0.00 0.00 44.53 4.02
1666 2112 0.321671 TGCAGGAGTAAGCAGGACAC 59.678 55.000 0.00 0.00 35.51 3.67
1670 2116 3.679389 CAGGAGTAAGCAGGACACAAAT 58.321 45.455 0.00 0.00 0.00 2.32
1688 2134 5.018809 ACAAATCATGTAGAAAGGGCATGT 58.981 37.500 0.00 0.00 41.63 3.21
1748 4220 4.059511 CAATTGGCATTGTTGAGCTTTGA 58.940 39.130 0.00 0.00 35.86 2.69
1752 4224 2.036346 GGCATTGTTGAGCTTTGACCTT 59.964 45.455 0.00 0.00 0.00 3.50
1758 4230 6.959639 TTGTTGAGCTTTGACCTTTATCTT 57.040 33.333 0.00 0.00 0.00 2.40
1759 4231 6.560253 TGTTGAGCTTTGACCTTTATCTTC 57.440 37.500 0.00 0.00 0.00 2.87
1762 5640 5.491982 TGAGCTTTGACCTTTATCTTCTCC 58.508 41.667 0.00 0.00 0.00 3.71
1767 5645 7.126421 AGCTTTGACCTTTATCTTCTCCAGATA 59.874 37.037 0.00 0.00 40.85 1.98
1769 5647 6.732896 TGACCTTTATCTTCTCCAGATACC 57.267 41.667 0.00 0.00 43.19 2.73
1773 5651 5.773680 CCTTTATCTTCTCCAGATACCCGTA 59.226 44.000 0.00 0.00 43.19 4.02
1779 5657 5.839063 TCTTCTCCAGATACCCGTAATGAAT 59.161 40.000 0.00 0.00 0.00 2.57
1780 5658 6.326583 TCTTCTCCAGATACCCGTAATGAATT 59.673 38.462 0.00 0.00 0.00 2.17
1783 5661 8.202461 TCTCCAGATACCCGTAATGAATTTAT 57.798 34.615 0.00 0.00 0.00 1.40
1784 5662 8.656806 TCTCCAGATACCCGTAATGAATTTATT 58.343 33.333 0.74 0.74 0.00 1.40
1804 5682 8.924511 TTTATTCATCTCTTTCAACACTTCCT 57.075 30.769 0.00 0.00 0.00 3.36
1806 5684 9.658799 TTATTCATCTCTTTCAACACTTCCTAG 57.341 33.333 0.00 0.00 0.00 3.02
1807 5685 6.042638 TCATCTCTTTCAACACTTCCTAGG 57.957 41.667 0.82 0.82 0.00 3.02
1808 5686 5.544176 TCATCTCTTTCAACACTTCCTAGGT 59.456 40.000 9.08 0.00 0.00 3.08
1809 5687 5.888982 TCTCTTTCAACACTTCCTAGGTT 57.111 39.130 9.08 0.00 0.00 3.50
1810 5688 5.855045 TCTCTTTCAACACTTCCTAGGTTC 58.145 41.667 9.08 0.00 0.00 3.62
1811 5689 5.365605 TCTCTTTCAACACTTCCTAGGTTCA 59.634 40.000 9.08 0.00 0.00 3.18
1812 5690 6.043243 TCTCTTTCAACACTTCCTAGGTTCAT 59.957 38.462 9.08 0.00 0.00 2.57
1813 5691 6.601332 TCTTTCAACACTTCCTAGGTTCATT 58.399 36.000 9.08 0.00 0.00 2.57
1814 5692 7.741785 TCTTTCAACACTTCCTAGGTTCATTA 58.258 34.615 9.08 0.00 0.00 1.90
1815 5693 7.660208 TCTTTCAACACTTCCTAGGTTCATTAC 59.340 37.037 9.08 0.00 0.00 1.89
1816 5694 6.428083 TCAACACTTCCTAGGTTCATTACA 57.572 37.500 9.08 0.00 0.00 2.41
1817 5695 7.016153 TCAACACTTCCTAGGTTCATTACAT 57.984 36.000 9.08 0.00 0.00 2.29
1818 5696 6.878923 TCAACACTTCCTAGGTTCATTACATG 59.121 38.462 9.08 0.00 0.00 3.21
1819 5697 6.374417 ACACTTCCTAGGTTCATTACATGT 57.626 37.500 9.08 2.69 0.00 3.21
1820 5698 6.407202 ACACTTCCTAGGTTCATTACATGTC 58.593 40.000 9.08 0.00 0.00 3.06
1821 5699 6.013725 ACACTTCCTAGGTTCATTACATGTCA 60.014 38.462 9.08 0.00 0.00 3.58
1822 5700 6.536582 CACTTCCTAGGTTCATTACATGTCAG 59.463 42.308 9.08 0.00 0.00 3.51
1823 5701 6.440647 ACTTCCTAGGTTCATTACATGTCAGA 59.559 38.462 9.08 0.00 0.00 3.27
1824 5702 6.471233 TCCTAGGTTCATTACATGTCAGAG 57.529 41.667 9.08 0.00 0.00 3.35
1825 5703 5.958380 TCCTAGGTTCATTACATGTCAGAGT 59.042 40.000 9.08 0.00 0.00 3.24
1826 5704 7.123383 TCCTAGGTTCATTACATGTCAGAGTA 58.877 38.462 9.08 0.00 0.00 2.59
1827 5705 7.068348 TCCTAGGTTCATTACATGTCAGAGTAC 59.932 40.741 9.08 0.00 0.00 2.73
1828 5706 5.651530 AGGTTCATTACATGTCAGAGTACG 58.348 41.667 0.00 0.00 0.00 3.67
1829 5707 5.185249 AGGTTCATTACATGTCAGAGTACGT 59.815 40.000 0.00 0.00 0.00 3.57
1830 5708 6.376299 AGGTTCATTACATGTCAGAGTACGTA 59.624 38.462 0.00 0.00 0.00 3.57
1831 5709 7.068348 AGGTTCATTACATGTCAGAGTACGTAT 59.932 37.037 0.00 0.00 0.00 3.06
1832 5710 7.378995 GGTTCATTACATGTCAGAGTACGTATC 59.621 40.741 0.00 0.00 0.00 2.24
1833 5711 7.803279 TCATTACATGTCAGAGTACGTATCT 57.197 36.000 0.00 0.07 0.00 1.98
1834 5712 8.897872 TCATTACATGTCAGAGTACGTATCTA 57.102 34.615 0.00 0.00 0.00 1.98
1835 5713 8.989980 TCATTACATGTCAGAGTACGTATCTAG 58.010 37.037 0.00 0.00 0.00 2.43
1836 5714 8.775527 CATTACATGTCAGAGTACGTATCTAGT 58.224 37.037 0.00 1.62 0.00 2.57
1837 5715 9.993454 ATTACATGTCAGAGTACGTATCTAGTA 57.007 33.333 0.00 0.86 0.00 1.82
1838 5716 7.712264 ACATGTCAGAGTACGTATCTAGTAC 57.288 40.000 0.00 0.00 43.37 2.73
1851 5729 8.886816 ACGTATCTAGTACTGTTTCTAAAACG 57.113 34.615 5.39 5.80 0.00 3.60
1852 5730 8.507249 ACGTATCTAGTACTGTTTCTAAAACGT 58.493 33.333 5.39 6.38 31.07 3.99
1853 5731 8.993856 CGTATCTAGTACTGTTTCTAAAACGTC 58.006 37.037 5.39 0.00 0.00 4.34
1856 5734 8.792831 TCTAGTACTGTTTCTAAAACGTCTTG 57.207 34.615 5.39 0.00 0.00 3.02
1857 5735 8.408601 TCTAGTACTGTTTCTAAAACGTCTTGT 58.591 33.333 5.39 0.00 0.00 3.16
1858 5736 9.669353 CTAGTACTGTTTCTAAAACGTCTTGTA 57.331 33.333 5.39 0.00 0.00 2.41
1860 5738 9.538508 AGTACTGTTTCTAAAACGTCTTGTATT 57.461 29.630 0.00 0.00 0.00 1.89
1861 5739 9.577003 GTACTGTTTCTAAAACGTCTTGTATTG 57.423 33.333 0.00 0.00 0.00 1.90
1862 5740 8.205131 ACTGTTTCTAAAACGTCTTGTATTGT 57.795 30.769 0.00 0.00 0.00 2.71
1863 5741 8.333186 ACTGTTTCTAAAACGTCTTGTATTGTC 58.667 33.333 0.00 0.00 0.00 3.18
1864 5742 7.632721 TGTTTCTAAAACGTCTTGTATTGTCC 58.367 34.615 0.00 0.00 0.00 4.02
1865 5743 7.280428 TGTTTCTAAAACGTCTTGTATTGTCCA 59.720 33.333 0.00 0.00 0.00 4.02
1866 5744 7.416154 TTCTAAAACGTCTTGTATTGTCCAG 57.584 36.000 0.00 0.00 0.00 3.86
1867 5745 6.751157 TCTAAAACGTCTTGTATTGTCCAGA 58.249 36.000 0.00 0.00 0.00 3.86
1868 5746 7.211573 TCTAAAACGTCTTGTATTGTCCAGAA 58.788 34.615 0.00 0.00 0.00 3.02
1869 5747 5.924475 AAACGTCTTGTATTGTCCAGAAG 57.076 39.130 0.00 0.00 0.00 2.85
1870 5748 4.866508 ACGTCTTGTATTGTCCAGAAGA 57.133 40.909 0.00 0.00 0.00 2.87
1871 5749 4.810790 ACGTCTTGTATTGTCCAGAAGAG 58.189 43.478 0.00 0.00 0.00 2.85
1872 5750 4.281182 ACGTCTTGTATTGTCCAGAAGAGT 59.719 41.667 0.00 0.00 0.00 3.24
1873 5751 5.475909 ACGTCTTGTATTGTCCAGAAGAGTA 59.524 40.000 0.00 0.00 0.00 2.59
1874 5752 5.800941 CGTCTTGTATTGTCCAGAAGAGTAC 59.199 44.000 0.00 0.00 0.00 2.73
1875 5753 5.800941 GTCTTGTATTGTCCAGAAGAGTACG 59.199 44.000 0.00 0.00 0.00 3.67
1876 5754 5.475909 TCTTGTATTGTCCAGAAGAGTACGT 59.524 40.000 0.00 0.00 0.00 3.57
1877 5755 6.656270 TCTTGTATTGTCCAGAAGAGTACGTA 59.344 38.462 0.00 0.00 0.00 3.57
1878 5756 7.338703 TCTTGTATTGTCCAGAAGAGTACGTAT 59.661 37.037 0.00 0.00 0.00 3.06
1879 5757 8.510243 TTGTATTGTCCAGAAGAGTACGTATA 57.490 34.615 0.00 0.00 0.00 1.47
1957 5835 4.137543 GTTTGGTCACTCTTCTGGACAAT 58.862 43.478 0.00 0.00 33.26 2.71
1959 5837 2.303022 TGGTCACTCTTCTGGACAATCC 59.697 50.000 0.00 0.00 36.96 3.01
1971 5849 1.808945 GGACAATCCAACTCAGTGCTG 59.191 52.381 0.00 0.00 36.28 4.41
1988 5889 0.447801 CTGGGTACGATTTGCTGCAC 59.552 55.000 0.00 0.00 0.00 4.57
1992 5893 1.394917 GGTACGATTTGCTGCACTCAG 59.605 52.381 0.00 0.00 43.16 3.35
2032 5933 2.094234 GGTTTGCATGCCGGAATTAAGT 60.094 45.455 16.68 0.00 0.00 2.24
2060 5961 7.362401 GCAATGCTCTTCTTCTCAAGGATTTAA 60.362 37.037 0.00 0.00 28.76 1.52
2120 6026 1.469308 CCTGTAGTCAGTCGGTCAGTC 59.531 57.143 0.00 0.00 39.82 3.51
2148 6055 4.502950 GCTTCTATAGCCATGCTTCTCTGT 60.503 45.833 0.00 0.00 44.48 3.41
2189 6203 5.163683 GCTAAGTTACATCAGACTCGGTGTA 60.164 44.000 0.00 0.00 0.00 2.90
2199 6213 5.651530 TCAGACTCGGTGTAATTGAGATTC 58.348 41.667 0.00 0.00 33.93 2.52
2260 6281 3.450904 TGTATCCTCCACAAAGTAGCCT 58.549 45.455 0.00 0.00 0.00 4.58
2263 6284 2.334977 TCCTCCACAAAGTAGCCTTCA 58.665 47.619 0.00 0.00 0.00 3.02
2332 6353 4.575885 AGCCGTGTTTCTCTGCTTTATAA 58.424 39.130 0.00 0.00 0.00 0.98
2353 6374 4.457834 AGCCTGTACTAGCAACTACTTG 57.542 45.455 9.82 0.00 0.00 3.16
2366 6387 1.687123 ACTACTTGACGTCAGGCTGTT 59.313 47.619 25.78 10.32 0.00 3.16
2367 6388 2.102588 ACTACTTGACGTCAGGCTGTTT 59.897 45.455 25.78 9.96 0.00 2.83
2368 6389 2.902705 ACTTGACGTCAGGCTGTTTA 57.097 45.000 25.78 4.88 0.00 2.01
2369 6390 3.188159 ACTTGACGTCAGGCTGTTTAA 57.812 42.857 25.78 4.14 0.00 1.52
2370 6391 2.870411 ACTTGACGTCAGGCTGTTTAAC 59.130 45.455 25.78 4.10 0.00 2.01
2371 6392 1.873698 TGACGTCAGGCTGTTTAACC 58.126 50.000 15.76 1.34 0.00 2.85
2372 6393 1.139256 TGACGTCAGGCTGTTTAACCA 59.861 47.619 15.76 3.93 0.00 3.67
2373 6394 1.529865 GACGTCAGGCTGTTTAACCAC 59.470 52.381 15.27 2.15 0.00 4.16
2374 6395 1.140252 ACGTCAGGCTGTTTAACCACT 59.860 47.619 15.27 0.00 0.00 4.00
2376 6397 2.223377 CGTCAGGCTGTTTAACCACTTC 59.777 50.000 15.27 0.00 0.00 3.01
2378 6399 4.638304 GTCAGGCTGTTTAACCACTTCTA 58.362 43.478 15.27 0.00 0.00 2.10
2379 6400 5.246307 GTCAGGCTGTTTAACCACTTCTAT 58.754 41.667 15.27 0.00 0.00 1.98
2380 6401 6.403878 GTCAGGCTGTTTAACCACTTCTATA 58.596 40.000 15.27 0.00 0.00 1.31
2381 6402 6.535508 GTCAGGCTGTTTAACCACTTCTATAG 59.464 42.308 15.27 0.00 0.00 1.31
2382 6403 5.294552 CAGGCTGTTTAACCACTTCTATAGC 59.705 44.000 6.28 0.00 0.00 2.97
2383 6404 4.575236 GGCTGTTTAACCACTTCTATAGCC 59.425 45.833 0.00 0.00 39.98 3.93
2384 6405 5.183228 GCTGTTTAACCACTTCTATAGCCA 58.817 41.667 0.00 0.00 0.00 4.75
2385 6406 5.823045 GCTGTTTAACCACTTCTATAGCCAT 59.177 40.000 0.00 0.00 0.00 4.40
2386 6407 6.238484 GCTGTTTAACCACTTCTATAGCCATG 60.238 42.308 0.00 0.00 0.00 3.66
2387 6408 6.717289 TGTTTAACCACTTCTATAGCCATGT 58.283 36.000 0.00 0.00 0.00 3.21
2388 6409 7.172342 TGTTTAACCACTTCTATAGCCATGTT 58.828 34.615 0.00 0.00 0.00 2.71
2389 6410 7.668052 TGTTTAACCACTTCTATAGCCATGTTT 59.332 33.333 0.00 0.00 0.00 2.83
2390 6411 7.859325 TTAACCACTTCTATAGCCATGTTTC 57.141 36.000 0.00 0.00 0.00 2.78
2391 6412 5.700402 ACCACTTCTATAGCCATGTTTCT 57.300 39.130 0.00 0.00 0.00 2.52
2392 6413 5.675538 ACCACTTCTATAGCCATGTTTCTC 58.324 41.667 0.00 0.00 0.00 2.87
2393 6414 5.426833 ACCACTTCTATAGCCATGTTTCTCT 59.573 40.000 0.00 0.00 0.00 3.10
2394 6415 5.757320 CCACTTCTATAGCCATGTTTCTCTG 59.243 44.000 0.00 0.00 0.00 3.35
2395 6416 6.344500 CACTTCTATAGCCATGTTTCTCTGT 58.656 40.000 0.00 0.00 0.00 3.41
2396 6417 6.820656 CACTTCTATAGCCATGTTTCTCTGTT 59.179 38.462 0.00 0.00 0.00 3.16
2397 6418 7.335422 CACTTCTATAGCCATGTTTCTCTGTTT 59.665 37.037 0.00 0.00 0.00 2.83
2398 6419 7.335422 ACTTCTATAGCCATGTTTCTCTGTTTG 59.665 37.037 0.00 0.00 0.00 2.93
2399 6420 6.711277 TCTATAGCCATGTTTCTCTGTTTGT 58.289 36.000 0.00 0.00 0.00 2.83
2400 6421 7.168219 TCTATAGCCATGTTTCTCTGTTTGTT 58.832 34.615 0.00 0.00 0.00 2.83
2401 6422 4.574599 AGCCATGTTTCTCTGTTTGTTC 57.425 40.909 0.00 0.00 0.00 3.18
2402 6423 3.953612 AGCCATGTTTCTCTGTTTGTTCA 59.046 39.130 0.00 0.00 0.00 3.18
2403 6424 4.402155 AGCCATGTTTCTCTGTTTGTTCAA 59.598 37.500 0.00 0.00 0.00 2.69
2404 6425 5.069516 AGCCATGTTTCTCTGTTTGTTCAAT 59.930 36.000 0.00 0.00 0.00 2.57
2405 6426 5.754890 GCCATGTTTCTCTGTTTGTTCAATT 59.245 36.000 0.00 0.00 0.00 2.32
2406 6427 6.922957 GCCATGTTTCTCTGTTTGTTCAATTA 59.077 34.615 0.00 0.00 0.00 1.40
2407 6428 7.437862 GCCATGTTTCTCTGTTTGTTCAATTAA 59.562 33.333 0.00 0.00 0.00 1.40
2408 6429 9.480053 CCATGTTTCTCTGTTTGTTCAATTAAT 57.520 29.630 0.00 0.00 0.00 1.40
2413 6434 9.528018 TTTCTCTGTTTGTTCAATTAATTGACC 57.472 29.630 26.69 21.47 45.63 4.02
2414 6435 8.463930 TCTCTGTTTGTTCAATTAATTGACCT 57.536 30.769 26.69 0.00 45.63 3.85
2415 6436 8.352201 TCTCTGTTTGTTCAATTAATTGACCTG 58.648 33.333 26.69 16.12 45.63 4.00
2416 6437 8.231692 TCTGTTTGTTCAATTAATTGACCTGA 57.768 30.769 26.69 17.60 45.63 3.86
2417 6438 8.690884 TCTGTTTGTTCAATTAATTGACCTGAA 58.309 29.630 26.69 16.80 45.63 3.02
2418 6439 8.870160 TGTTTGTTCAATTAATTGACCTGAAG 57.130 30.769 26.69 1.40 45.63 3.02
2419 6440 8.690884 TGTTTGTTCAATTAATTGACCTGAAGA 58.309 29.630 26.69 15.59 45.63 2.87
2420 6441 9.528018 GTTTGTTCAATTAATTGACCTGAAGAA 57.472 29.630 26.69 15.31 45.63 2.52
2421 6442 9.528018 TTTGTTCAATTAATTGACCTGAAGAAC 57.472 29.630 26.69 19.70 45.63 3.01
2422 6443 7.657336 TGTTCAATTAATTGACCTGAAGAACC 58.343 34.615 26.69 8.39 45.63 3.62
2423 6444 7.286546 TGTTCAATTAATTGACCTGAAGAACCA 59.713 33.333 26.69 8.24 45.63 3.67
2424 6445 7.452880 TCAATTAATTGACCTGAAGAACCAG 57.547 36.000 23.86 0.00 41.51 4.00
2425 6446 5.904362 ATTAATTGACCTGAAGAACCAGC 57.096 39.130 0.00 0.00 32.97 4.85
2426 6447 2.957402 ATTGACCTGAAGAACCAGCA 57.043 45.000 0.00 0.00 32.97 4.41
2427 6448 2.957402 TTGACCTGAAGAACCAGCAT 57.043 45.000 0.00 0.00 32.97 3.79
2428 6449 2.479566 TGACCTGAAGAACCAGCATC 57.520 50.000 0.00 0.00 32.97 3.91
2429 6450 1.699083 TGACCTGAAGAACCAGCATCA 59.301 47.619 0.00 0.00 32.97 3.07
2430 6451 2.289882 TGACCTGAAGAACCAGCATCAG 60.290 50.000 0.00 0.00 39.16 2.90
2432 6453 2.775911 CTGAAGAACCAGCATCAGGA 57.224 50.000 0.00 0.00 36.50 3.86
2433 6454 3.063510 CTGAAGAACCAGCATCAGGAA 57.936 47.619 0.00 0.00 36.50 3.36
2434 6455 3.415212 CTGAAGAACCAGCATCAGGAAA 58.585 45.455 0.00 0.00 36.50 3.13
2435 6456 3.822735 CTGAAGAACCAGCATCAGGAAAA 59.177 43.478 0.00 0.00 36.50 2.29
2436 6457 4.214310 TGAAGAACCAGCATCAGGAAAAA 58.786 39.130 0.00 0.00 0.00 1.94
2437 6458 4.834496 TGAAGAACCAGCATCAGGAAAAAT 59.166 37.500 0.00 0.00 0.00 1.82
2438 6459 6.009589 TGAAGAACCAGCATCAGGAAAAATA 58.990 36.000 0.00 0.00 0.00 1.40
2439 6460 6.493115 TGAAGAACCAGCATCAGGAAAAATAA 59.507 34.615 0.00 0.00 0.00 1.40
2440 6461 6.272822 AGAACCAGCATCAGGAAAAATAAC 57.727 37.500 0.00 0.00 0.00 1.89
2441 6462 5.185828 AGAACCAGCATCAGGAAAAATAACC 59.814 40.000 0.00 0.00 0.00 2.85
2442 6463 3.443681 ACCAGCATCAGGAAAAATAACCG 59.556 43.478 0.00 0.00 0.00 4.44
2443 6464 3.438360 CAGCATCAGGAAAAATAACCGC 58.562 45.455 0.00 0.00 0.00 5.68
2444 6465 3.129287 CAGCATCAGGAAAAATAACCGCT 59.871 43.478 0.00 0.00 0.00 5.52
2445 6466 3.378427 AGCATCAGGAAAAATAACCGCTC 59.622 43.478 0.00 0.00 0.00 5.03
2446 6467 3.489229 GCATCAGGAAAAATAACCGCTCC 60.489 47.826 0.00 0.00 0.00 4.70
2447 6468 2.352388 TCAGGAAAAATAACCGCTCCG 58.648 47.619 0.00 0.00 0.00 4.63
2448 6469 2.081462 CAGGAAAAATAACCGCTCCGT 58.919 47.619 0.00 0.00 0.00 4.69
2449 6470 2.486592 CAGGAAAAATAACCGCTCCGTT 59.513 45.455 0.00 0.00 0.00 4.44
2450 6471 2.745821 AGGAAAAATAACCGCTCCGTTC 59.254 45.455 0.00 0.00 0.00 3.95
2451 6472 2.159476 GGAAAAATAACCGCTCCGTTCC 60.159 50.000 0.00 0.00 0.00 3.62
2452 6473 1.081094 AAAATAACCGCTCCGTTCCG 58.919 50.000 0.00 0.00 0.00 4.30
2453 6474 0.037046 AAATAACCGCTCCGTTCCGT 60.037 50.000 0.00 0.00 0.00 4.69
2454 6475 0.738412 AATAACCGCTCCGTTCCGTG 60.738 55.000 0.00 0.00 0.00 4.94
2455 6476 2.567564 ATAACCGCTCCGTTCCGTGG 62.568 60.000 0.00 0.00 36.86 4.94
2459 6480 4.699522 GCTCCGTTCCGTGGGCTT 62.700 66.667 0.00 0.00 0.00 4.35
2460 6481 2.434359 CTCCGTTCCGTGGGCTTC 60.434 66.667 0.00 0.00 0.00 3.86
2461 6482 2.920912 TCCGTTCCGTGGGCTTCT 60.921 61.111 0.00 0.00 0.00 2.85
2462 6483 2.032071 CCGTTCCGTGGGCTTCTT 59.968 61.111 0.00 0.00 0.00 2.52
2463 6484 1.599797 CCGTTCCGTGGGCTTCTTT 60.600 57.895 0.00 0.00 0.00 2.52
2464 6485 1.574702 CCGTTCCGTGGGCTTCTTTC 61.575 60.000 0.00 0.00 0.00 2.62
2465 6486 1.866925 GTTCCGTGGGCTTCTTTCG 59.133 57.895 0.00 0.00 0.00 3.46
2466 6487 1.964373 TTCCGTGGGCTTCTTTCGC 60.964 57.895 0.00 0.00 0.00 4.70
2467 6488 2.668185 TTCCGTGGGCTTCTTTCGCA 62.668 55.000 0.00 0.00 0.00 5.10
2468 6489 2.680913 CCGTGGGCTTCTTTCGCAG 61.681 63.158 0.00 0.00 0.00 5.18
2469 6490 2.563427 GTGGGCTTCTTTCGCAGC 59.437 61.111 0.00 0.00 35.07 5.25
2470 6491 1.968540 GTGGGCTTCTTTCGCAGCT 60.969 57.895 0.00 0.00 36.20 4.24
2471 6492 1.672356 TGGGCTTCTTTCGCAGCTC 60.672 57.895 0.00 0.00 37.00 4.09
2472 6493 1.376553 GGGCTTCTTTCGCAGCTCT 60.377 57.895 0.00 0.00 33.28 4.09
2473 6494 1.365368 GGGCTTCTTTCGCAGCTCTC 61.365 60.000 0.00 0.00 33.28 3.20
2474 6495 0.390998 GGCTTCTTTCGCAGCTCTCT 60.391 55.000 0.00 0.00 36.20 3.10
2475 6496 0.998669 GCTTCTTTCGCAGCTCTCTC 59.001 55.000 0.00 0.00 32.87 3.20
2476 6497 1.639280 CTTCTTTCGCAGCTCTCTCC 58.361 55.000 0.00 0.00 0.00 3.71
2477 6498 0.969149 TTCTTTCGCAGCTCTCTCCA 59.031 50.000 0.00 0.00 0.00 3.86
2478 6499 0.244994 TCTTTCGCAGCTCTCTCCAC 59.755 55.000 0.00 0.00 0.00 4.02
2479 6500 0.037882 CTTTCGCAGCTCTCTCCACA 60.038 55.000 0.00 0.00 0.00 4.17
2480 6501 0.319900 TTTCGCAGCTCTCTCCACAC 60.320 55.000 0.00 0.00 0.00 3.82
2481 6502 1.181741 TTCGCAGCTCTCTCCACACT 61.182 55.000 0.00 0.00 0.00 3.55
2482 6503 1.153862 CGCAGCTCTCTCCACACTC 60.154 63.158 0.00 0.00 0.00 3.51
2483 6504 1.153862 GCAGCTCTCTCCACACTCG 60.154 63.158 0.00 0.00 0.00 4.18
2484 6505 1.872197 GCAGCTCTCTCCACACTCGT 61.872 60.000 0.00 0.00 0.00 4.18
2485 6506 0.170116 CAGCTCTCTCCACACTCGTC 59.830 60.000 0.00 0.00 0.00 4.20
2486 6507 0.250945 AGCTCTCTCCACACTCGTCA 60.251 55.000 0.00 0.00 0.00 4.35
2487 6508 0.170116 GCTCTCTCCACACTCGTCAG 59.830 60.000 0.00 0.00 0.00 3.51
2488 6509 0.170116 CTCTCTCCACACTCGTCAGC 59.830 60.000 0.00 0.00 0.00 4.26
2489 6510 0.250945 TCTCTCCACACTCGTCAGCT 60.251 55.000 0.00 0.00 0.00 4.24
2490 6511 0.170116 CTCTCCACACTCGTCAGCTC 59.830 60.000 0.00 0.00 0.00 4.09
2500 6521 2.288886 ACTCGTCAGCTCCTGTTTAACC 60.289 50.000 0.00 0.00 32.61 2.85
2505 6526 3.498777 GTCAGCTCCTGTTTAACCACTTC 59.501 47.826 0.00 0.00 32.61 3.01
2507 6528 4.137543 CAGCTCCTGTTTAACCACTTCTT 58.862 43.478 0.00 0.00 0.00 2.52
2520 6541 9.760077 TTTAACCACTTCTTCTAGTCTGTTTAG 57.240 33.333 0.00 0.00 0.00 1.85
2521 6542 6.980416 ACCACTTCTTCTAGTCTGTTTAGT 57.020 37.500 0.00 0.00 0.00 2.24
2654 6675 9.810545 TGTCATTAATTGTAAGTATGTCATCGA 57.189 29.630 0.00 0.00 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.137675 CTTCGACTGCATCCCATCTCA 59.862 52.381 0.00 0.00 0.00 3.27
69 70 4.321718 TCTCAAGCAGAGGAAAGAACATG 58.678 43.478 6.38 0.00 44.81 3.21
93 94 3.282021 TGGGCATTTCTGAACTGATAGC 58.718 45.455 11.41 0.00 0.00 2.97
130 131 4.335315 CACACTTAGTTTTGGTGCTTCAGA 59.665 41.667 0.00 0.00 34.70 3.27
147 148 6.265196 TGCCATCTTCAATTTCTAACACACTT 59.735 34.615 0.00 0.00 0.00 3.16
251 252 1.339438 TGCATTGAGCCTCTGACCTTC 60.339 52.381 0.00 0.00 44.83 3.46
254 255 0.035630 AGTGCATTGAGCCTCTGACC 60.036 55.000 0.00 0.00 44.83 4.02
275 276 1.999648 ACTGTCCACCGGTACACTTA 58.000 50.000 6.87 0.00 0.00 2.24
278 279 2.231964 TCATTACTGTCCACCGGTACAC 59.768 50.000 6.87 7.56 34.59 2.90
294 295 9.347240 GGAGATTTCTGATTCCATTTCTCATTA 57.653 33.333 0.00 0.00 32.04 1.90
297 298 6.966751 AGGAGATTTCTGATTCCATTTCTCA 58.033 36.000 0.00 0.00 32.04 3.27
309 310 7.619698 TCCATAACTGTAAGAGGAGATTTCTGA 59.380 37.037 0.00 0.00 37.43 3.27
318 319 6.738635 TCCTAACTCCATAACTGTAAGAGGA 58.261 40.000 0.00 0.00 37.43 3.71
407 409 8.742777 AGCACATCACAACTATCAATGTTTAAT 58.257 29.630 0.00 0.00 0.00 1.40
413 415 4.330894 ACGAGCACATCACAACTATCAATG 59.669 41.667 0.00 0.00 0.00 2.82
484 486 2.602257 TCGGCACCATCTAATCACTG 57.398 50.000 0.00 0.00 0.00 3.66
495 497 0.321564 CCAGTCAGATTTCGGCACCA 60.322 55.000 0.00 0.00 0.00 4.17
501 503 0.302890 GCGCATCCAGTCAGATTTCG 59.697 55.000 0.30 0.00 0.00 3.46
517 519 3.123620 CAAGAGGAGCTGGTGCGC 61.124 66.667 0.00 0.00 45.42 6.09
543 545 3.716872 AGGTATTGATTCCTTCCGGATGT 59.283 43.478 4.15 0.00 39.58 3.06
573 575 1.486310 ACAGTGCTCAAGAGTCACCAA 59.514 47.619 15.85 0.00 36.68 3.67
577 579 3.541996 TGAAACAGTGCTCAAGAGTCA 57.458 42.857 0.00 0.00 0.00 3.41
579 581 4.265073 AGTTTGAAACAGTGCTCAAGAGT 58.735 39.130 11.02 2.33 33.30 3.24
580 582 4.889832 AGTTTGAAACAGTGCTCAAGAG 57.110 40.909 11.02 0.00 33.30 2.85
581 583 5.401550 CAAAGTTTGAAACAGTGCTCAAGA 58.598 37.500 10.19 0.00 33.30 3.02
582 584 4.032104 GCAAAGTTTGAAACAGTGCTCAAG 59.968 41.667 19.82 0.11 39.16 3.02
583 585 3.925913 GCAAAGTTTGAAACAGTGCTCAA 59.074 39.130 19.82 4.53 39.16 3.02
584 586 3.193267 AGCAAAGTTTGAAACAGTGCTCA 59.807 39.130 23.99 0.00 45.08 4.26
585 587 3.774066 AGCAAAGTTTGAAACAGTGCTC 58.226 40.909 23.99 6.60 45.08 4.26
586 588 3.874392 AGCAAAGTTTGAAACAGTGCT 57.126 38.095 23.99 23.99 44.13 4.40
587 589 3.774066 AGAGCAAAGTTTGAAACAGTGC 58.226 40.909 19.82 21.18 41.20 4.40
588 590 5.401550 TCAAGAGCAAAGTTTGAAACAGTG 58.598 37.500 19.82 8.50 0.00 3.66
589 591 5.183904 ACTCAAGAGCAAAGTTTGAAACAGT 59.816 36.000 19.82 9.13 31.11 3.55
590 592 5.644644 ACTCAAGAGCAAAGTTTGAAACAG 58.355 37.500 19.82 8.56 31.11 3.16
591 593 5.643379 ACTCAAGAGCAAAGTTTGAAACA 57.357 34.783 19.82 0.00 31.11 2.83
592 594 8.131731 AGATAACTCAAGAGCAAAGTTTGAAAC 58.868 33.333 19.82 0.00 35.08 2.78
593 595 8.131100 CAGATAACTCAAGAGCAAAGTTTGAAA 58.869 33.333 19.82 0.00 35.08 2.69
594 596 7.498900 TCAGATAACTCAAGAGCAAAGTTTGAA 59.501 33.333 19.82 0.00 35.08 2.69
595 597 6.992123 TCAGATAACTCAAGAGCAAAGTTTGA 59.008 34.615 19.82 0.00 35.08 2.69
596 598 7.194607 TCAGATAACTCAAGAGCAAAGTTTG 57.805 36.000 11.41 11.41 35.08 2.93
597 599 7.992754 ATCAGATAACTCAAGAGCAAAGTTT 57.007 32.000 0.00 0.00 35.08 2.66
598 600 7.446625 ACAATCAGATAACTCAAGAGCAAAGTT 59.553 33.333 0.00 0.00 37.10 2.66
599 601 6.939163 ACAATCAGATAACTCAAGAGCAAAGT 59.061 34.615 0.00 0.00 0.00 2.66
600 602 7.242079 CACAATCAGATAACTCAAGAGCAAAG 58.758 38.462 0.00 0.00 0.00 2.77
601 603 6.348786 GCACAATCAGATAACTCAAGAGCAAA 60.349 38.462 0.00 0.00 0.00 3.68
602 604 5.122869 GCACAATCAGATAACTCAAGAGCAA 59.877 40.000 0.00 0.00 0.00 3.91
603 605 4.633126 GCACAATCAGATAACTCAAGAGCA 59.367 41.667 0.00 0.00 0.00 4.26
604 606 4.633126 TGCACAATCAGATAACTCAAGAGC 59.367 41.667 0.00 0.00 0.00 4.09
617 619 4.756642 TCTCTACCAAACTTGCACAATCAG 59.243 41.667 0.00 0.00 0.00 2.90
657 659 5.183969 CAAATCTCCATGCTCTTGAGAGAA 58.816 41.667 12.07 1.30 44.74 2.87
687 689 5.065988 GCCGAATATGGACTCAAGCTTAAAA 59.934 40.000 0.00 0.00 0.00 1.52
726 728 4.608948 AGACCCTTCAACTAACACTGAG 57.391 45.455 0.00 0.00 0.00 3.35
731 733 4.134563 GCAAGAAGACCCTTCAACTAACA 58.865 43.478 9.10 0.00 0.00 2.41
778 780 3.969312 TGTGAGGATGGCATCTCTGATAA 59.031 43.478 25.48 6.96 0.00 1.75
787 789 2.812836 TTCATGTGTGAGGATGGCAT 57.187 45.000 0.00 0.00 35.39 4.40
800 805 3.693085 GCATGGACAGAAGTGATTCATGT 59.307 43.478 0.00 0.00 34.51 3.21
832 837 6.046290 ACTTCCACAGTAATACAACCCTAC 57.954 41.667 0.00 0.00 31.97 3.18
844 849 5.031066 ACTGCTGTTAAACTTCCACAGTA 57.969 39.130 0.00 0.00 40.17 2.74
906 911 1.276421 ACTTGAACACTATCGCAGCCT 59.724 47.619 0.00 0.00 0.00 4.58
919 924 4.504461 CGGCTGACATGATAGTACTTGAAC 59.496 45.833 0.00 0.00 0.00 3.18
927 932 1.447643 GCCCGGCTGACATGATAGT 59.552 57.895 0.71 0.00 0.00 2.12
941 946 1.141234 GGTTTCTAGAGTCCGCCCG 59.859 63.158 0.00 0.00 0.00 6.13
945 950 3.506455 TGACTTCTGGTTTCTAGAGTCCG 59.494 47.826 9.63 6.06 0.00 4.79
948 953 5.477637 GGTAGTGACTTCTGGTTTCTAGAGT 59.522 44.000 0.00 0.00 0.00 3.24
984 989 5.462398 CGCTACCATTGTTGATTACTCTACC 59.538 44.000 0.00 0.00 0.00 3.18
986 1003 5.597806 CCGCTACCATTGTTGATTACTCTA 58.402 41.667 0.00 0.00 0.00 2.43
991 1008 2.942376 CTGCCGCTACCATTGTTGATTA 59.058 45.455 0.00 0.00 0.00 1.75
1001 1024 2.230994 CTCTCTTGCTGCCGCTACCA 62.231 60.000 0.70 0.00 36.97 3.25
1002 1025 1.520342 CTCTCTTGCTGCCGCTACC 60.520 63.158 0.70 0.00 36.97 3.18
1004 1027 1.964608 ATGCTCTCTTGCTGCCGCTA 61.965 55.000 0.70 0.00 36.97 4.26
1008 1031 0.450983 GTGAATGCTCTCTTGCTGCC 59.549 55.000 0.00 0.00 0.00 4.85
1042 1068 8.216423 AGCACATGACCATATTCTTAGAATCTT 58.784 33.333 11.06 0.00 0.00 2.40
1044 1070 7.094890 CCAGCACATGACCATATTCTTAGAATC 60.095 40.741 11.06 0.00 0.00 2.52
1052 1078 2.300433 TGCCAGCACATGACCATATTC 58.700 47.619 0.00 0.00 0.00 1.75
1084 1113 2.432628 CGTGGGCAGACGGAGAAC 60.433 66.667 0.67 0.00 35.65 3.01
1109 1138 1.911293 GCTTCGAATGCGCAGTTCCA 61.911 55.000 18.32 6.03 33.23 3.53
1212 1242 3.245052 GCTCATTAGGTAGGGATGCCAAT 60.245 47.826 5.86 0.00 0.00 3.16
1238 1268 0.103937 CTTGAGAGATCCGTCTGCCC 59.896 60.000 0.00 0.00 33.97 5.36
1243 1273 0.459489 AGCTGCTTGAGAGATCCGTC 59.541 55.000 0.00 0.00 0.00 4.79
1248 1278 4.639310 CCAATTACAAGCTGCTTGAGAGAT 59.361 41.667 40.04 25.43 43.42 2.75
1287 1317 0.465278 GGCATCCAGGGAGCTTCTTC 60.465 60.000 0.00 0.00 0.00 2.87
1335 1371 5.676552 TCATAACGGGCATCTAGCTTTTTA 58.323 37.500 0.00 0.00 44.79 1.52
1371 1417 5.560953 GCGTATGGCAATGATAGAAAGGAAC 60.561 44.000 0.00 0.00 42.87 3.62
1403 1458 9.211485 CATGTGATGTCATAGATAACTGCAATA 57.789 33.333 0.00 0.00 0.00 1.90
1405 1460 7.049754 ACATGTGATGTCATAGATAACTGCAA 58.950 34.615 0.00 0.00 39.92 4.08
1463 1535 6.798315 TGAAAATTTTTACCACATGGCATG 57.202 33.333 25.31 25.31 39.32 4.06
1492 1570 8.178964 GTCAGAACACACAAATACAAAGTAACA 58.821 33.333 0.00 0.00 0.00 2.41
1497 1577 7.416817 TGATGTCAGAACACACAAATACAAAG 58.583 34.615 0.00 0.00 38.48 2.77
1541 1626 4.431809 CATGTCTTTGGTTTGAGTGCAAA 58.568 39.130 0.00 0.00 41.47 3.68
1543 1628 2.361757 CCATGTCTTTGGTTTGAGTGCA 59.638 45.455 0.00 0.00 31.74 4.57
1567 1661 8.943002 CACTTACGGACTATTCTTGGTATTTTT 58.057 33.333 0.00 0.00 0.00 1.94
1568 1662 7.551617 CCACTTACGGACTATTCTTGGTATTTT 59.448 37.037 0.00 0.00 0.00 1.82
1620 1714 2.044946 GGCGTTCCATGGCTTCCT 60.045 61.111 6.96 0.00 0.00 3.36
1621 1715 2.361104 TGGCGTTCCATGGCTTCC 60.361 61.111 6.96 6.05 37.47 3.46
1622 1716 1.372087 CTCTGGCGTTCCATGGCTTC 61.372 60.000 6.96 0.00 42.51 3.86
1633 1727 0.105593 CCTGCATGTATCTCTGGCGT 59.894 55.000 0.00 0.00 0.00 5.68
1640 2083 3.070734 CCTGCTTACTCCTGCATGTATCT 59.929 47.826 0.00 0.00 38.59 1.98
1641 2084 3.070159 TCCTGCTTACTCCTGCATGTATC 59.930 47.826 0.00 0.00 38.59 2.24
1643 2089 2.168521 GTCCTGCTTACTCCTGCATGTA 59.831 50.000 0.00 0.00 38.59 2.29
1644 2090 1.065854 GTCCTGCTTACTCCTGCATGT 60.066 52.381 0.00 0.00 38.59 3.21
1663 2109 4.406456 TGCCCTTTCTACATGATTTGTGT 58.594 39.130 0.00 0.00 39.48 3.72
1665 2111 5.018809 ACATGCCCTTTCTACATGATTTGT 58.981 37.500 0.00 0.00 43.04 2.83
1666 2112 5.587388 ACATGCCCTTTCTACATGATTTG 57.413 39.130 0.00 0.00 43.04 2.32
1670 2116 6.663093 ACAAAATACATGCCCTTTCTACATGA 59.337 34.615 0.00 0.00 43.04 3.07
1709 4171 7.557724 TGCCAATTGATTACAATCATGACATT 58.442 30.769 7.12 0.72 44.67 2.71
1715 4187 8.041919 TCAACAATGCCAATTGATTACAATCAT 58.958 29.630 7.12 0.00 45.17 2.45
1719 4191 5.638657 GCTCAACAATGCCAATTGATTACAA 59.361 36.000 7.12 0.00 45.17 2.41
1758 4230 6.494666 AAATTCATTACGGGTATCTGGAGA 57.505 37.500 0.00 0.00 0.00 3.71
1759 4231 8.848474 AATAAATTCATTACGGGTATCTGGAG 57.152 34.615 0.00 0.00 0.00 3.86
1779 5657 8.924511 AGGAAGTGTTGAAAGAGATGAATAAA 57.075 30.769 0.00 0.00 0.00 1.40
1780 5658 9.658799 CTAGGAAGTGTTGAAAGAGATGAATAA 57.341 33.333 0.00 0.00 0.00 1.40
1783 5661 6.043243 ACCTAGGAAGTGTTGAAAGAGATGAA 59.957 38.462 17.98 0.00 0.00 2.57
1784 5662 5.544176 ACCTAGGAAGTGTTGAAAGAGATGA 59.456 40.000 17.98 0.00 0.00 2.92
1787 5665 5.365605 TGAACCTAGGAAGTGTTGAAAGAGA 59.634 40.000 17.98 0.00 0.00 3.10
1788 5666 5.611374 TGAACCTAGGAAGTGTTGAAAGAG 58.389 41.667 17.98 0.00 0.00 2.85
1811 5689 8.905660 ACTAGATACGTACTCTGACATGTAAT 57.094 34.615 0.00 0.00 0.00 1.89
1812 5690 9.254133 GTACTAGATACGTACTCTGACATGTAA 57.746 37.037 0.00 0.00 35.51 2.41
1813 5691 8.637099 AGTACTAGATACGTACTCTGACATGTA 58.363 37.037 0.00 8.62 42.80 2.29
1814 5692 7.438757 CAGTACTAGATACGTACTCTGACATGT 59.561 40.741 0.00 0.00 44.10 3.21
1815 5693 7.438757 ACAGTACTAGATACGTACTCTGACATG 59.561 40.741 14.14 0.00 44.10 3.21
1816 5694 7.499292 ACAGTACTAGATACGTACTCTGACAT 58.501 38.462 14.14 0.00 44.10 3.06
1817 5695 6.871844 ACAGTACTAGATACGTACTCTGACA 58.128 40.000 14.14 0.00 44.10 3.58
1818 5696 7.769272 AACAGTACTAGATACGTACTCTGAC 57.231 40.000 14.14 10.49 44.10 3.51
1819 5697 8.256605 AGAAACAGTACTAGATACGTACTCTGA 58.743 37.037 14.14 2.16 44.10 3.27
1820 5698 8.422973 AGAAACAGTACTAGATACGTACTCTG 57.577 38.462 14.14 11.16 44.10 3.35
1825 5703 9.973246 CGTTTTAGAAACAGTACTAGATACGTA 57.027 33.333 0.00 0.00 38.97 3.57
1826 5704 8.507249 ACGTTTTAGAAACAGTACTAGATACGT 58.493 33.333 0.00 0.00 38.97 3.57
1827 5705 8.886816 ACGTTTTAGAAACAGTACTAGATACG 57.113 34.615 0.00 0.00 38.97 3.06
1830 5708 9.408069 CAAGACGTTTTAGAAACAGTACTAGAT 57.592 33.333 0.00 0.00 0.00 1.98
1831 5709 8.408601 ACAAGACGTTTTAGAAACAGTACTAGA 58.591 33.333 0.00 0.00 0.00 2.43
1832 5710 8.571461 ACAAGACGTTTTAGAAACAGTACTAG 57.429 34.615 0.00 0.00 0.00 2.57
1834 5712 9.538508 AATACAAGACGTTTTAGAAACAGTACT 57.461 29.630 0.00 0.00 0.00 2.73
1835 5713 9.577003 CAATACAAGACGTTTTAGAAACAGTAC 57.423 33.333 0.00 0.00 0.00 2.73
1836 5714 9.316730 ACAATACAAGACGTTTTAGAAACAGTA 57.683 29.630 0.00 0.00 0.00 2.74
1837 5715 8.205131 ACAATACAAGACGTTTTAGAAACAGT 57.795 30.769 0.00 3.42 0.00 3.55
1838 5716 7.797123 GGACAATACAAGACGTTTTAGAAACAG 59.203 37.037 0.00 0.71 0.00 3.16
1839 5717 7.280428 TGGACAATACAAGACGTTTTAGAAACA 59.720 33.333 0.00 0.00 0.00 2.83
1840 5718 7.632721 TGGACAATACAAGACGTTTTAGAAAC 58.367 34.615 0.00 0.00 0.00 2.78
1841 5719 7.711772 TCTGGACAATACAAGACGTTTTAGAAA 59.288 33.333 0.00 0.00 0.00 2.52
1842 5720 7.211573 TCTGGACAATACAAGACGTTTTAGAA 58.788 34.615 0.00 0.00 0.00 2.10
1843 5721 6.751157 TCTGGACAATACAAGACGTTTTAGA 58.249 36.000 0.00 0.00 0.00 2.10
1844 5722 7.384115 TCTTCTGGACAATACAAGACGTTTTAG 59.616 37.037 0.00 0.00 0.00 1.85
1845 5723 7.211573 TCTTCTGGACAATACAAGACGTTTTA 58.788 34.615 0.00 0.00 0.00 1.52
1846 5724 6.053005 TCTTCTGGACAATACAAGACGTTTT 58.947 36.000 0.00 0.00 0.00 2.43
1847 5725 5.607477 TCTTCTGGACAATACAAGACGTTT 58.393 37.500 0.00 0.00 0.00 3.60
1848 5726 5.209818 TCTTCTGGACAATACAAGACGTT 57.790 39.130 0.00 0.00 0.00 3.99
1849 5727 4.281182 ACTCTTCTGGACAATACAAGACGT 59.719 41.667 0.00 0.00 0.00 4.34
1850 5728 4.810790 ACTCTTCTGGACAATACAAGACG 58.189 43.478 0.00 0.00 0.00 4.18
1851 5729 5.800941 CGTACTCTTCTGGACAATACAAGAC 59.199 44.000 0.00 0.00 0.00 3.01
1852 5730 5.475909 ACGTACTCTTCTGGACAATACAAGA 59.524 40.000 0.00 0.00 0.00 3.02
1853 5731 5.710984 ACGTACTCTTCTGGACAATACAAG 58.289 41.667 0.00 0.00 0.00 3.16
1854 5732 5.717078 ACGTACTCTTCTGGACAATACAA 57.283 39.130 0.00 0.00 0.00 2.41
1855 5733 8.510243 TTATACGTACTCTTCTGGACAATACA 57.490 34.615 0.00 0.00 0.00 2.29
1856 5734 9.395707 CATTATACGTACTCTTCTGGACAATAC 57.604 37.037 0.00 0.00 0.00 1.89
1857 5735 9.128404 ACATTATACGTACTCTTCTGGACAATA 57.872 33.333 0.00 0.00 0.00 1.90
1858 5736 8.008513 ACATTATACGTACTCTTCTGGACAAT 57.991 34.615 0.00 0.00 0.00 2.71
1859 5737 7.400599 ACATTATACGTACTCTTCTGGACAA 57.599 36.000 0.00 0.00 0.00 3.18
1860 5738 7.400599 AACATTATACGTACTCTTCTGGACA 57.599 36.000 0.00 0.00 0.00 4.02
1861 5739 9.609950 GATAACATTATACGTACTCTTCTGGAC 57.390 37.037 0.00 0.00 0.00 4.02
1862 5740 9.346005 TGATAACATTATACGTACTCTTCTGGA 57.654 33.333 0.00 0.00 0.00 3.86
1863 5741 9.961265 TTGATAACATTATACGTACTCTTCTGG 57.039 33.333 0.00 0.00 0.00 3.86
1959 5837 0.317160 TCGTACCCAGCACTGAGTTG 59.683 55.000 0.00 0.00 0.00 3.16
1971 5849 0.727398 GAGTGCAGCAAATCGTACCC 59.273 55.000 0.00 0.00 0.00 3.69
1988 5889 1.800655 CGACTGAAGCCGGATTCTGAG 60.801 57.143 36.21 26.46 33.67 3.35
1992 5893 1.212616 CATCGACTGAAGCCGGATTC 58.787 55.000 25.35 25.35 0.00 2.52
2032 5933 2.865119 TGAGAAGAAGAGCATTGCCA 57.135 45.000 4.70 0.00 0.00 4.92
2037 5938 8.820153 AATTAAATCCTTGAGAAGAAGAGCAT 57.180 30.769 0.00 0.00 0.00 3.79
2137 6044 3.920231 TCAGGCATAACAGAGAAGCAT 57.080 42.857 0.00 0.00 0.00 3.79
2140 6047 4.808364 GCTAGTTCAGGCATAACAGAGAAG 59.192 45.833 5.03 0.00 0.00 2.85
2199 6213 6.992063 AGAGCCACAAGTAATCAAACTATG 57.008 37.500 0.00 0.00 0.00 2.23
2231 6245 7.360113 ACTTTGTGGAGGATACAAACAAAAT 57.640 32.000 0.00 0.00 41.57 1.82
2244 6259 2.427506 GTGAAGGCTACTTTGTGGAGG 58.572 52.381 0.00 0.00 36.97 4.30
2260 6281 2.709125 CTTCCCACAGCGACGGTGAA 62.709 60.000 31.66 15.14 38.54 3.18
2263 6284 4.681978 GCTTCCCACAGCGACGGT 62.682 66.667 0.00 0.00 0.00 4.83
2308 6329 0.106708 AAGCAGAGAAACACGGCTCA 59.893 50.000 0.00 0.00 32.84 4.26
2332 6353 4.082136 GTCAAGTAGTTGCTAGTACAGGCT 60.082 45.833 14.31 0.00 33.41 4.58
2346 6367 1.329256 ACAGCCTGACGTCAAGTAGT 58.671 50.000 20.49 12.92 0.00 2.73
2353 6374 1.529865 GTGGTTAAACAGCCTGACGTC 59.470 52.381 9.11 9.11 0.00 4.34
2366 6387 7.630082 AGAAACATGGCTATAGAAGTGGTTAA 58.370 34.615 3.21 0.00 0.00 2.01
2367 6388 7.125811 AGAGAAACATGGCTATAGAAGTGGTTA 59.874 37.037 3.21 0.00 0.00 2.85
2368 6389 6.067217 AGAAACATGGCTATAGAAGTGGTT 57.933 37.500 3.21 2.93 0.00 3.67
2369 6390 5.426833 AGAGAAACATGGCTATAGAAGTGGT 59.573 40.000 3.21 0.00 0.00 4.16
2370 6391 5.757320 CAGAGAAACATGGCTATAGAAGTGG 59.243 44.000 3.21 0.00 0.00 4.00
2371 6392 6.344500 ACAGAGAAACATGGCTATAGAAGTG 58.656 40.000 3.21 0.73 0.00 3.16
2372 6393 6.552445 ACAGAGAAACATGGCTATAGAAGT 57.448 37.500 3.21 0.00 0.00 3.01
2373 6394 7.335422 ACAAACAGAGAAACATGGCTATAGAAG 59.665 37.037 3.21 0.00 0.00 2.85
2374 6395 7.168219 ACAAACAGAGAAACATGGCTATAGAA 58.832 34.615 3.21 0.00 0.00 2.10
2376 6397 6.992063 ACAAACAGAGAAACATGGCTATAG 57.008 37.500 0.00 0.00 0.00 1.31
2378 6399 5.769662 TGAACAAACAGAGAAACATGGCTAT 59.230 36.000 0.00 0.00 0.00 2.97
2379 6400 5.129634 TGAACAAACAGAGAAACATGGCTA 58.870 37.500 0.00 0.00 0.00 3.93
2380 6401 3.953612 TGAACAAACAGAGAAACATGGCT 59.046 39.130 0.00 0.00 0.00 4.75
2381 6402 4.305989 TGAACAAACAGAGAAACATGGC 57.694 40.909 0.00 0.00 0.00 4.40
2382 6403 8.870160 TTAATTGAACAAACAGAGAAACATGG 57.130 30.769 0.00 0.00 0.00 3.66
2399 6420 7.523709 GCTGGTTCTTCAGGTCAATTAATTGAA 60.524 37.037 28.02 13.17 40.25 2.69
2400 6421 6.071952 GCTGGTTCTTCAGGTCAATTAATTGA 60.072 38.462 23.86 23.86 38.46 2.57
2401 6422 6.095377 GCTGGTTCTTCAGGTCAATTAATTG 58.905 40.000 20.13 20.13 35.98 2.32
2402 6423 5.774690 TGCTGGTTCTTCAGGTCAATTAATT 59.225 36.000 0.00 0.00 35.43 1.40
2403 6424 5.324409 TGCTGGTTCTTCAGGTCAATTAAT 58.676 37.500 0.00 0.00 35.43 1.40
2404 6425 4.724399 TGCTGGTTCTTCAGGTCAATTAA 58.276 39.130 0.00 0.00 35.43 1.40
2405 6426 4.365514 TGCTGGTTCTTCAGGTCAATTA 57.634 40.909 0.00 0.00 35.43 1.40
2406 6427 3.228188 TGCTGGTTCTTCAGGTCAATT 57.772 42.857 0.00 0.00 35.43 2.32
2407 6428 2.957402 TGCTGGTTCTTCAGGTCAAT 57.043 45.000 0.00 0.00 35.43 2.57
2408 6429 2.106338 TGATGCTGGTTCTTCAGGTCAA 59.894 45.455 0.00 0.00 35.43 3.18
2409 6430 1.699083 TGATGCTGGTTCTTCAGGTCA 59.301 47.619 0.00 0.00 35.43 4.02
2410 6431 2.354259 CTGATGCTGGTTCTTCAGGTC 58.646 52.381 0.00 0.00 35.70 3.85
2411 6432 1.004044 CCTGATGCTGGTTCTTCAGGT 59.996 52.381 14.11 0.00 45.76 4.00
2412 6433 1.747709 CCTGATGCTGGTTCTTCAGG 58.252 55.000 10.10 10.10 45.68 3.86
2413 6434 2.775911 TCCTGATGCTGGTTCTTCAG 57.224 50.000 0.00 0.00 37.74 3.02
2414 6435 3.507162 TTTCCTGATGCTGGTTCTTCA 57.493 42.857 0.00 0.00 0.00 3.02
2415 6436 4.853924 TTTTTCCTGATGCTGGTTCTTC 57.146 40.909 0.00 0.00 0.00 2.87
2416 6437 6.295292 GGTTATTTTTCCTGATGCTGGTTCTT 60.295 38.462 0.00 0.00 0.00 2.52
2417 6438 5.185828 GGTTATTTTTCCTGATGCTGGTTCT 59.814 40.000 0.00 0.00 0.00 3.01
2418 6439 5.410924 GGTTATTTTTCCTGATGCTGGTTC 58.589 41.667 0.00 0.00 0.00 3.62
2419 6440 4.082245 CGGTTATTTTTCCTGATGCTGGTT 60.082 41.667 0.00 0.00 0.00 3.67
2420 6441 3.443681 CGGTTATTTTTCCTGATGCTGGT 59.556 43.478 0.00 0.00 0.00 4.00
2421 6442 3.734902 GCGGTTATTTTTCCTGATGCTGG 60.735 47.826 0.00 0.00 0.00 4.85
2422 6443 3.129287 AGCGGTTATTTTTCCTGATGCTG 59.871 43.478 0.00 0.00 0.00 4.41
2423 6444 3.356290 AGCGGTTATTTTTCCTGATGCT 58.644 40.909 0.00 0.00 0.00 3.79
2424 6445 3.489229 GGAGCGGTTATTTTTCCTGATGC 60.489 47.826 0.00 0.00 0.00 3.91
2425 6446 3.242739 CGGAGCGGTTATTTTTCCTGATG 60.243 47.826 0.00 0.00 0.00 3.07
2426 6447 2.943033 CGGAGCGGTTATTTTTCCTGAT 59.057 45.455 0.00 0.00 0.00 2.90
2427 6448 2.289819 ACGGAGCGGTTATTTTTCCTGA 60.290 45.455 0.00 0.00 0.00 3.86
2428 6449 2.081462 ACGGAGCGGTTATTTTTCCTG 58.919 47.619 0.00 0.00 0.00 3.86
2429 6450 2.484742 ACGGAGCGGTTATTTTTCCT 57.515 45.000 0.00 0.00 0.00 3.36
2430 6451 2.159476 GGAACGGAGCGGTTATTTTTCC 60.159 50.000 0.00 0.00 0.00 3.13
2431 6452 3.127081 GGAACGGAGCGGTTATTTTTC 57.873 47.619 0.00 0.00 0.00 2.29
2447 6468 1.866925 CGAAAGAAGCCCACGGAAC 59.133 57.895 0.00 0.00 0.00 3.62
2448 6469 1.964373 GCGAAAGAAGCCCACGGAA 60.964 57.895 0.00 0.00 0.00 4.30
2449 6470 2.358247 GCGAAAGAAGCCCACGGA 60.358 61.111 0.00 0.00 0.00 4.69
2450 6471 2.668212 TGCGAAAGAAGCCCACGG 60.668 61.111 0.00 0.00 0.00 4.94
2451 6472 2.863153 CTGCGAAAGAAGCCCACG 59.137 61.111 0.00 0.00 0.00 4.94
2457 6478 1.067283 TGGAGAGAGCTGCGAAAGAAG 60.067 52.381 0.00 0.00 40.88 2.85
2458 6479 0.969149 TGGAGAGAGCTGCGAAAGAA 59.031 50.000 0.00 0.00 34.84 2.52
2459 6480 0.244994 GTGGAGAGAGCTGCGAAAGA 59.755 55.000 0.00 0.00 34.84 2.52
2460 6481 0.037882 TGTGGAGAGAGCTGCGAAAG 60.038 55.000 0.00 0.00 34.84 2.62
2461 6482 0.319900 GTGTGGAGAGAGCTGCGAAA 60.320 55.000 0.00 0.00 34.84 3.46
2462 6483 1.181741 AGTGTGGAGAGAGCTGCGAA 61.182 55.000 0.00 0.00 34.84 4.70
2463 6484 1.590610 GAGTGTGGAGAGAGCTGCGA 61.591 60.000 0.00 0.00 34.84 5.10
2464 6485 1.153862 GAGTGTGGAGAGAGCTGCG 60.154 63.158 0.00 0.00 34.84 5.18
2465 6486 1.153862 CGAGTGTGGAGAGAGCTGC 60.154 63.158 0.00 0.00 0.00 5.25
2466 6487 0.170116 GACGAGTGTGGAGAGAGCTG 59.830 60.000 0.00 0.00 0.00 4.24
2467 6488 0.250945 TGACGAGTGTGGAGAGAGCT 60.251 55.000 0.00 0.00 0.00 4.09
2468 6489 0.170116 CTGACGAGTGTGGAGAGAGC 59.830 60.000 0.00 0.00 0.00 4.09
2469 6490 0.170116 GCTGACGAGTGTGGAGAGAG 59.830 60.000 0.00 0.00 0.00 3.20
2470 6491 0.250945 AGCTGACGAGTGTGGAGAGA 60.251 55.000 0.00 0.00 0.00 3.10
2471 6492 0.170116 GAGCTGACGAGTGTGGAGAG 59.830 60.000 0.00 0.00 0.00 3.20
2472 6493 1.244697 GGAGCTGACGAGTGTGGAGA 61.245 60.000 0.00 0.00 0.00 3.71
2473 6494 1.214062 GGAGCTGACGAGTGTGGAG 59.786 63.158 0.00 0.00 0.00 3.86
2474 6495 1.228583 AGGAGCTGACGAGTGTGGA 60.229 57.895 0.00 0.00 0.00 4.02
2475 6496 1.080230 CAGGAGCTGACGAGTGTGG 60.080 63.158 0.00 0.00 32.44 4.17
2476 6497 0.032678 AACAGGAGCTGACGAGTGTG 59.967 55.000 0.00 0.00 35.18 3.82
2477 6498 0.753262 AAACAGGAGCTGACGAGTGT 59.247 50.000 0.00 0.00 35.18 3.55
2478 6499 2.724977 TAAACAGGAGCTGACGAGTG 57.275 50.000 0.00 0.00 35.18 3.51
2479 6500 2.288886 GGTTAAACAGGAGCTGACGAGT 60.289 50.000 0.00 0.00 35.18 4.18
2480 6501 2.288825 TGGTTAAACAGGAGCTGACGAG 60.289 50.000 0.00 0.00 35.18 4.18
2481 6502 1.689813 TGGTTAAACAGGAGCTGACGA 59.310 47.619 0.00 0.00 35.18 4.20
2482 6503 1.798813 GTGGTTAAACAGGAGCTGACG 59.201 52.381 0.00 0.00 35.18 4.35
2483 6504 3.127425 AGTGGTTAAACAGGAGCTGAC 57.873 47.619 0.00 0.00 35.18 3.51
2484 6505 3.391296 AGAAGTGGTTAAACAGGAGCTGA 59.609 43.478 0.00 0.00 35.18 4.26
2485 6506 3.744660 AGAAGTGGTTAAACAGGAGCTG 58.255 45.455 0.00 0.00 37.52 4.24
2486 6507 4.103311 AGAAGAAGTGGTTAAACAGGAGCT 59.897 41.667 0.00 0.00 0.00 4.09
2487 6508 4.390264 AGAAGAAGTGGTTAAACAGGAGC 58.610 43.478 0.00 0.00 0.00 4.70
2488 6509 6.760291 ACTAGAAGAAGTGGTTAAACAGGAG 58.240 40.000 0.00 0.00 0.00 3.69
2489 6510 6.553852 AGACTAGAAGAAGTGGTTAAACAGGA 59.446 38.462 0.00 0.00 0.00 3.86
2490 6511 6.647067 CAGACTAGAAGAAGTGGTTAAACAGG 59.353 42.308 0.00 0.00 0.00 4.00
2529 6550 8.822652 CATGCAATGTGATATACTCTACAGAA 57.177 34.615 0.00 0.00 40.20 3.02
2588 6609 9.860898 GATTACCAAGGCAATATTAATCCAATC 57.139 33.333 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.