AutoCloner

Multiple sequence alignment - TraesCS1B01G014200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G014200	chr1B	100.000	3320	0	0	1	3320	6694211	6690892	0.000000e+00	6131
1	TraesCS1B01G014200	chr1B	98.220	2472	36	5	1	2470	6339697	6342162	0.000000e+00	4314
2	TraesCS1B01G014200	chr1B	96.189	2493	66	10	1	2470	629701735	629704221	0.000000e+00	4050
3	TraesCS1B01G014200	chr1B	92.784	776	54	2	1	775	6530761	6529987	0.000000e+00	1122
4	TraesCS1B01G014200	chr1B	82.616	1139	166	22	906	2029	7130214	7129093	0.000000e+00	977
5	TraesCS1B01G014200	chr1B	83.474	1065	153	15	905	1954	7928368	7927312	0.000000e+00	970
6	TraesCS1B01G014200	chr1B	81.930	1140	169	23	905	2029	6326385	6327502	0.000000e+00	929
7	TraesCS1B01G014200	chr1B	96.981	530	13	2	770	1297	6523803	6523275	0.000000e+00	887
8	TraesCS1B01G014200	chr1B	94.624	465	23	1	2856	3320	629705316	629705778	0.000000e+00	719
9	TraesCS1B01G014200	chr1B	92.191	461	22	1	2860	3320	6343262	6343708	1.000000e-179	640
10	TraesCS1B01G014200	chr1B	87.500	376	34	9	2488	2861	629704204	629704568	3.960000e-114	422
11	TraesCS1B01G014200	chr1B	83.862	378	38	15	2488	2861	6342145	6342503	4.100000e-89	339
12	TraesCS1B01G014200	chr1D	80.534	1572	214	48	905	2466	3227927	3229416	0.000000e+00	1123
13	TraesCS1B01G014200	chr1D	80.694	1067	170	25	906	1950	3122989	3124041	0.000000e+00	797
14	TraesCS1B01G014200	chr1D	82.702	792	110	20	905	1675	3614497	3615282	0.000000e+00	678
15	TraesCS1B01G014200	chr1D	82.915	398	51	8	2079	2461	3615610	3616005	3.170000e-90	342
16	TraesCS1B01G014200	chr1A	81.858	904	143	9	1084	1980	6499064	6498175	0.000000e+00	741
17	TraesCS1B01G014200	chr1A	85.491	641	78	11	897	1536	6439204	6438578	0.000000e+00	654
18	TraesCS1B01G014200	chr1A	86.842	190	23	2	905	1092	6500193	6500004	9.330000e-51	211
19	TraesCS1B01G014200	chrUn	81.295	556	83	11	905	1443	9820636	9820085	6.580000e-117	431
20	TraesCS1B01G014200	chrUn	87.379	309	39	0	1392	1700	9820066	9819758	4.070000e-94	355
21	TraesCS1B01G014200	chrUn	83.102	361	53	7	2079	2435	9819459	9819103	4.130000e-84	322

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G014200	chr1B	6690892	6694211	3319	True	6131.000000	6131	100.000000	1	3320	1	chr1B.!!$R3	3319
1	TraesCS1B01G014200	chr1B	6339697	6343708	4011	False	1764.333333	4314	91.424333	1	3320	3	chr1B.!!$F2	3319
2	TraesCS1B01G014200	chr1B	629701735	629705778	4043	False	1730.333333	4050	92.771000	1	3320	3	chr1B.!!$F3	3319
3	TraesCS1B01G014200	chr1B	6529987	6530761	774	True	1122.000000	1122	92.784000	1	775	1	chr1B.!!$R2	774
4	TraesCS1B01G014200	chr1B	7129093	7130214	1121	True	977.000000	977	82.616000	906	2029	1	chr1B.!!$R4	1123
5	TraesCS1B01G014200	chr1B	7927312	7928368	1056	True	970.000000	970	83.474000	905	1954	1	chr1B.!!$R5	1049
6	TraesCS1B01G014200	chr1B	6326385	6327502	1117	False	929.000000	929	81.930000	905	2029	1	chr1B.!!$F1	1124
7	TraesCS1B01G014200	chr1B	6523275	6523803	528	True	887.000000	887	96.981000	770	1297	1	chr1B.!!$R1	527
8	TraesCS1B01G014200	chr1D	3227927	3229416	1489	False	1123.000000	1123	80.534000	905	2466	1	chr1D.!!$F2	1561
9	TraesCS1B01G014200	chr1D	3122989	3124041	1052	False	797.000000	797	80.694000	906	1950	1	chr1D.!!$F1	1044
10	TraesCS1B01G014200	chr1D	3614497	3616005	1508	False	510.000000	678	82.808500	905	2461	2	chr1D.!!$F3	1556
11	TraesCS1B01G014200	chr1A	6438578	6439204	626	True	654.000000	654	85.491000	897	1536	1	chr1A.!!$R1	639
12	TraesCS1B01G014200	chr1A	6498175	6500193	2018	True	476.000000	741	84.350000	905	1980	2	chr1A.!!$R2	1075
13	TraesCS1B01G014200	chrUn	9819103	9820636	1533	True	369.333333	431	83.925333	905	2435	3	chrUn.!!$R1	1530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
174	175	0.108138	GCGCTCCACCTCAGTTGTAT	60.108	55.000	0.0	0.0	0.0	2.29	F
517	521	1.546476	AGTACCCTCACGAAGCAGAAG	59.454	52.381	0.0	0.0	0.0	2.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1083	1100	1.886542	GTTCCTTCGGCAATCTGGTTT	59.113	47.619	0.00	0.0	0.0	3.27	R
2476	3581	0.039978	CACACATAACCCGCGCAAAA	60.040	50.000	8.75	0.0	0.0	2.44	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	4.046938	ACTCCATGCTTGTACTACATCG	57.953	45.455	0.00	0.00	0.00	3.84
125	126	5.847111	ATTGTACTCAGCATTGCATCATT	57.153	34.783	11.91	0.00	0.00	2.57
174	175	0.108138	GCGCTCCACCTCAGTTGTAT	60.108	55.000	0.00	0.00	0.00	2.29
296	297	5.063944	CAGTTCCTCTCATTTAACATGGACG	59.936	44.000	0.00	0.00	0.00	4.79
300	301	4.330074	CCTCTCATTTAACATGGACGTCAC	59.670	45.833	18.91	7.49	0.00	3.67
301	302	5.147330	TCTCATTTAACATGGACGTCACT	57.853	39.130	18.91	0.00	0.00	3.41
517	521	1.546476	AGTACCCTCACGAAGCAGAAG	59.454	52.381	0.00	0.00	0.00	2.85
584	588	9.237187	TCATTTACCATAAGTGAAACATAAGCA	57.763	29.630	0.00	0.00	41.43	3.91
625	629	4.685302	CGTAGGGACCTCACATACTCACTA	60.685	50.000	0.00	0.00	0.00	2.74
1083	1100	6.268617	AGCAGCATCTCTTCCACTTATACATA	59.731	38.462	0.00	0.00	0.00	2.29
1883	2950	5.067273	TCAATTGGGTTTTCGTACACTGAT	58.933	37.500	5.42	0.00	0.00	2.90
1941	3008	1.806542	GTGATGGTGCACTTAGTGTGG	59.193	52.381	17.98	0.00	46.27	4.17
2467	3572	6.542821	TCCTTCTCATTATGTGTGTTTTCCT	58.457	36.000	0.00	0.00	0.00	3.36
2468	3573	6.655003	TCCTTCTCATTATGTGTGTTTTCCTC	59.345	38.462	0.00	0.00	0.00	3.71
2469	3574	6.656693	CCTTCTCATTATGTGTGTTTTCCTCT	59.343	38.462	0.00	0.00	0.00	3.69
2470	3575	7.148340	CCTTCTCATTATGTGTGTTTTCCTCTC	60.148	40.741	0.00	0.00	0.00	3.20
2471	3576	7.009179	TCTCATTATGTGTGTTTTCCTCTCT	57.991	36.000	0.00	0.00	0.00	3.10
2472	3577	7.453393	TCTCATTATGTGTGTTTTCCTCTCTT	58.547	34.615	0.00	0.00	0.00	2.85
2473	3578	7.939039	TCTCATTATGTGTGTTTTCCTCTCTTT	59.061	33.333	0.00	0.00	0.00	2.52
2474	3579	8.463930	TCATTATGTGTGTTTTCCTCTCTTTT	57.536	30.769	0.00	0.00	0.00	2.27
2475	3580	8.912988	TCATTATGTGTGTTTTCCTCTCTTTTT	58.087	29.630	0.00	0.00	0.00	1.94
2493	3598	3.481009	TTTTTGCGCGGGTTATGTG	57.519	47.368	8.83	0.00	0.00	3.21
2494	3599	0.669077	TTTTTGCGCGGGTTATGTGT	59.331	45.000	8.83	0.00	0.00	3.72
2495	3600	0.039978	TTTTGCGCGGGTTATGTGTG	60.040	50.000	8.83	0.00	0.00	3.82
2496	3601	2.465097	TTTGCGCGGGTTATGTGTGC	62.465	55.000	8.83	0.00	39.47	4.57
2497	3602	3.124921	GCGCGGGTTATGTGTGCT	61.125	61.111	8.83	0.00	36.26	4.40
2498	3603	2.686816	GCGCGGGTTATGTGTGCTT	61.687	57.895	8.83	0.00	36.26	3.91
2499	3604	1.873165	CGCGGGTTATGTGTGCTTT	59.127	52.632	0.00	0.00	0.00	3.51
2500	3605	0.179200	CGCGGGTTATGTGTGCTTTC	60.179	55.000	0.00	0.00	0.00	2.62
2501	3606	0.170339	GCGGGTTATGTGTGCTTTCC	59.830	55.000	0.00	0.00	0.00	3.13
2518	3623	4.091509	GCTTTCCTCTATTGTGTACACGTG	59.908	45.833	20.61	15.48	0.00	4.49
2526	3631	4.806342	ATTGTGTACACGTGTTTCCTTC	57.194	40.909	28.55	11.91	0.00	3.46
2675	3780	5.505173	AACTGTAGCATGCATTAATGGTC	57.495	39.130	21.98	2.07	39.02	4.02
2677	3782	4.949238	ACTGTAGCATGCATTAATGGTCAA	59.051	37.500	21.98	0.00	39.02	3.18
2679	3784	6.097270	ACTGTAGCATGCATTAATGGTCAAAT	59.903	34.615	21.98	0.00	39.02	2.32
2680	3785	6.506147	TGTAGCATGCATTAATGGTCAAATC	58.494	36.000	21.98	0.00	39.02	2.17
2681	3786	4.952460	AGCATGCATTAATGGTCAAATCC	58.048	39.130	21.98	0.00	33.00	3.01
2682	3787	4.406326	AGCATGCATTAATGGTCAAATCCA	59.594	37.500	21.98	4.33	42.01	3.41
2683	3788	4.508861	GCATGCATTAATGGTCAAATCCAC	59.491	41.667	14.21	0.00	40.51	4.02
2686	3791	5.477510	TGCATTAATGGTCAAATCCACAAC	58.522	37.500	17.02	0.00	40.51	3.32
2687	3792	5.011431	TGCATTAATGGTCAAATCCACAACA	59.989	36.000	17.02	0.00	40.51	3.33
2688	3793	6.108015	GCATTAATGGTCAAATCCACAACAT	58.892	36.000	17.02	0.00	40.51	2.71
2690	3795	6.907853	TTAATGGTCAAATCCACAACATCA	57.092	33.333	0.00	0.00	40.51	3.07
2692	3797	3.156293	TGGTCAAATCCACAACATCAGG	58.844	45.455	0.00	0.00	31.96	3.86
2694	3799	4.019174	GGTCAAATCCACAACATCAGGAT	58.981	43.478	0.00	0.00	43.77	3.24
2695	3800	4.142315	GGTCAAATCCACAACATCAGGATG	60.142	45.833	7.70	7.70	41.15	3.51
2696	3801	4.018490	TCAAATCCACAACATCAGGATGG	58.982	43.478	13.40	0.00	41.15	3.51
2728	3833	0.741221	GAGGCAAGGACGTGGTCATC	60.741	60.000	0.00	0.00	33.68	2.92
2737	3842	1.732259	GACGTGGTCATCAATGTGGAC	59.268	52.381	0.00	0.00	32.09	4.02
2739	3844	2.290260	ACGTGGTCATCAATGTGGACAT	60.290	45.455	8.66	0.00	38.41	3.06
2747	3852	7.716560	TGGTCATCAATGTGGACATAATTCTAG	59.283	37.037	8.66	0.00	35.10	2.43
2753	3858	5.172687	TGTGGACATAATTCTAGTTGCCA	57.827	39.130	0.00	0.00	0.00	4.92
2838	3943	2.889045	AGAAACTGTCGGCACACTACTA	59.111	45.455	0.00	0.00	0.00	1.82
2852	3957	7.052248	GGCACACTACTAAAATTACACCCTAT	58.948	38.462	0.00	0.00	0.00	2.57
2870	4736	3.319405	CCTATGCCGAGTGATGTCTAACT	59.681	47.826	0.00	0.00	0.00	2.24
2939	4805	3.267233	AGGCCCATCCCTGTTGCA	61.267	61.111	0.00	0.00	32.84	4.08
2956	4822	1.093159	GCACATTCTCAGCCTTCCAG	58.907	55.000	0.00	0.00	0.00	3.86
2975	4841	0.321671	GCAAGACTGCTACTCCACCA	59.678	55.000	0.00	0.00	45.74	4.17
3062	4928	1.027357	AGGCAATGCATCTTAAGGCG	58.973	50.000	7.79	0.00	34.08	5.52
3098	4964	0.879090	GTCTTTTTCGTCCCCGCAAT	59.121	50.000	0.00	0.00	0.00	3.56
3197	5063	4.278419	TGAGACATATGGAGTATGACCGTG	59.722	45.833	7.80	0.00	42.34	4.94

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	7.489113	CCATTTGTAAATATGTCAGCAAACTCC	59.511	37.037	0.00	0.00	0.00	3.85
125	126	2.094026	AGACAATACAGTGATGAGCGCA	60.094	45.455	11.47	0.00	0.00	6.09
174	175	0.320421	GTGCAAGGACTAACGGCAGA	60.320	55.000	0.00	0.00	34.78	4.26
296	297	3.575630	TGAGCAGTGAACGAATAGTGAC	58.424	45.455	0.00	0.00	0.00	3.67
300	301	2.857152	GCTCTGAGCAGTGAACGAATAG	59.143	50.000	24.02	0.00	41.89	1.73
301	302	2.732282	CGCTCTGAGCAGTGAACGAATA	60.732	50.000	27.46	0.00	42.58	1.75
517	521	0.035439	TTGTTTCTGGGAGCCCGATC	60.035	55.000	0.29	0.00	39.42	3.69
583	587	6.093404	CCTACGGCTATACACATACTCATTG	58.907	44.000	0.00	0.00	0.00	2.82
584	588	5.185249	CCCTACGGCTATACACATACTCATT	59.815	44.000	0.00	0.00	0.00	2.57
625	629	6.467677	ACTACATGATCACACTGTAAAAGCT	58.532	36.000	0.00	0.00	0.00	3.74
1083	1100	1.886542	GTTCCTTCGGCAATCTGGTTT	59.113	47.619	0.00	0.00	0.00	3.27
1669	2729	6.001460	TGTAATTCCAAGTTACCAAGTGAGG	58.999	40.000	0.00	0.00	32.40	3.86
1883	2950	4.261741	GCAATTTTCTTCTGACCAGCTTGA	60.262	41.667	0.00	0.00	0.00	3.02
1941	3008	2.552315	TCCAAAAAGAATGACTCACCGC	59.448	45.455	0.00	0.00	0.00	5.68
1984	3054	8.729805	AAAGTTATTTGGCAGAAAACATTGAA	57.270	26.923	9.57	0.00	0.00	2.69
1985	3055	9.823647	TTAAAGTTATTTGGCAGAAAACATTGA	57.176	25.926	9.57	0.71	0.00	2.57
2475	3580	0.669077	ACACATAACCCGCGCAAAAA	59.331	45.000	8.75	0.00	0.00	1.94
2476	3581	0.039978	CACACATAACCCGCGCAAAA	60.040	50.000	8.75	0.00	0.00	2.44
2477	3582	1.576920	CACACATAACCCGCGCAAA	59.423	52.632	8.75	0.00	0.00	3.68
2478	3583	2.972144	GCACACATAACCCGCGCAA	61.972	57.895	8.75	0.00	0.00	4.85
2479	3584	3.427425	GCACACATAACCCGCGCA	61.427	61.111	8.75	0.00	0.00	6.09
2480	3585	2.195123	AAAGCACACATAACCCGCGC	62.195	55.000	0.00	0.00	0.00	6.86
2481	3586	0.179200	GAAAGCACACATAACCCGCG	60.179	55.000	0.00	0.00	0.00	6.46
2482	3587	0.170339	GGAAAGCACACATAACCCGC	59.830	55.000	0.00	0.00	0.00	6.13
2483	3588	1.737793	GAGGAAAGCACACATAACCCG	59.262	52.381	0.00	0.00	0.00	5.28
2484	3589	3.073274	AGAGGAAAGCACACATAACCC	57.927	47.619	0.00	0.00	0.00	4.11
2485	3590	5.648092	ACAATAGAGGAAAGCACACATAACC	59.352	40.000	0.00	0.00	0.00	2.85
2486	3591	6.149474	ACACAATAGAGGAAAGCACACATAAC	59.851	38.462	0.00	0.00	0.00	1.89
2487	3592	6.237901	ACACAATAGAGGAAAGCACACATAA	58.762	36.000	0.00	0.00	0.00	1.90
2488	3593	5.804639	ACACAATAGAGGAAAGCACACATA	58.195	37.500	0.00	0.00	0.00	2.29
2489	3594	4.655963	ACACAATAGAGGAAAGCACACAT	58.344	39.130	0.00	0.00	0.00	3.21
2490	3595	4.085357	ACACAATAGAGGAAAGCACACA	57.915	40.909	0.00	0.00	0.00	3.72
2491	3596	4.994852	TGTACACAATAGAGGAAAGCACAC	59.005	41.667	0.00	0.00	0.00	3.82
2492	3597	4.994852	GTGTACACAATAGAGGAAAGCACA	59.005	41.667	21.14	0.00	0.00	4.57
2493	3598	4.091509	CGTGTACACAATAGAGGAAAGCAC	59.908	45.833	24.98	0.00	0.00	4.40
2494	3599	4.242475	CGTGTACACAATAGAGGAAAGCA	58.758	43.478	24.98	0.00	0.00	3.91
2495	3600	4.091509	CACGTGTACACAATAGAGGAAAGC	59.908	45.833	24.98	0.00	0.00	3.51
2496	3601	5.227908	ACACGTGTACACAATAGAGGAAAG	58.772	41.667	21.98	7.13	0.00	2.62
2497	3602	5.204409	ACACGTGTACACAATAGAGGAAA	57.796	39.130	21.98	0.00	0.00	3.13
2498	3603	4.859304	ACACGTGTACACAATAGAGGAA	57.141	40.909	21.98	0.00	0.00	3.36
2499	3604	4.859304	AACACGTGTACACAATAGAGGA	57.141	40.909	23.69	0.00	0.00	3.71
2500	3605	4.387862	GGAAACACGTGTACACAATAGAGG	59.612	45.833	23.69	9.71	0.00	3.69
2501	3606	5.227908	AGGAAACACGTGTACACAATAGAG	58.772	41.667	23.69	10.40	0.00	2.43
2655	3760	5.503662	TTGACCATTAATGCATGCTACAG	57.496	39.130	20.33	3.98	0.00	2.74
2657	3762	5.922544	GGATTTGACCATTAATGCATGCTAC	59.077	40.000	20.33	0.69	0.00	3.58
2658	3763	5.597594	TGGATTTGACCATTAATGCATGCTA	59.402	36.000	20.33	5.73	34.77	3.49
2660	3765	4.508861	GTGGATTTGACCATTAATGCATGC	59.491	41.667	11.82	11.82	42.17	4.06
2661	3766	5.662456	TGTGGATTTGACCATTAATGCATG	58.338	37.500	10.11	0.00	42.17	4.06
2663	3768	5.011431	TGTTGTGGATTTGACCATTAATGCA	59.989	36.000	10.11	0.84	42.17	3.96
2664	3769	5.477510	TGTTGTGGATTTGACCATTAATGC	58.522	37.500	10.11	0.00	42.17	3.56
2665	3770	7.321908	TGATGTTGTGGATTTGACCATTAATG	58.678	34.615	8.58	8.58	42.17	1.90
2666	3771	7.364056	CCTGATGTTGTGGATTTGACCATTAAT	60.364	37.037	0.00	0.00	42.17	1.40
2667	3772	6.071447	CCTGATGTTGTGGATTTGACCATTAA	60.071	38.462	0.00	0.00	42.17	1.40
2668	3773	5.418524	CCTGATGTTGTGGATTTGACCATTA	59.581	40.000	0.00	0.00	42.17	1.90
2669	3774	4.221262	CCTGATGTTGTGGATTTGACCATT	59.779	41.667	0.00	0.00	42.17	3.16
2670	3775	3.765511	CCTGATGTTGTGGATTTGACCAT	59.234	43.478	0.00	0.00	42.17	3.55
2671	3776	3.156293	CCTGATGTTGTGGATTTGACCA	58.844	45.455	0.00	0.00	37.63	4.02
2672	3777	3.420893	TCCTGATGTTGTGGATTTGACC	58.579	45.455	0.00	0.00	0.00	4.02
2673	3778	4.142315	CCATCCTGATGTTGTGGATTTGAC	60.142	45.833	6.40	0.00	38.41	3.18
2675	3780	4.018490	TCCATCCTGATGTTGTGGATTTG	58.982	43.478	6.40	0.00	38.41	2.32
2677	3782	4.531357	ATCCATCCTGATGTTGTGGATT	57.469	40.909	6.40	0.00	44.95	3.01
2679	3784	3.779738	TGTATCCATCCTGATGTTGTGGA	59.220	43.478	6.40	0.00	42.62	4.02
2680	3785	4.155063	TGTATCCATCCTGATGTTGTGG	57.845	45.455	6.40	0.00	37.11	4.17
2681	3786	6.512253	CGAATTGTATCCATCCTGATGTTGTG	60.512	42.308	6.40	0.00	37.11	3.33
2682	3787	5.528690	CGAATTGTATCCATCCTGATGTTGT	59.471	40.000	6.40	0.00	37.11	3.32
2683	3788	5.759763	TCGAATTGTATCCATCCTGATGTTG	59.240	40.000	6.40	0.00	37.11	3.33
2686	3791	4.934001	CCTCGAATTGTATCCATCCTGATG	59.066	45.833	0.00	0.00	38.51	3.07
2687	3792	4.840680	TCCTCGAATTGTATCCATCCTGAT	59.159	41.667	0.00	0.00	0.00	2.90
2688	3793	4.223144	TCCTCGAATTGTATCCATCCTGA	58.777	43.478	0.00	0.00	0.00	3.86
2690	3795	3.580458	CCTCCTCGAATTGTATCCATCCT	59.420	47.826	0.00	0.00	0.00	3.24
2692	3797	3.244215	TGCCTCCTCGAATTGTATCCATC	60.244	47.826	0.00	0.00	0.00	3.51
2694	3799	2.115427	TGCCTCCTCGAATTGTATCCA	58.885	47.619	0.00	0.00	0.00	3.41
2695	3800	2.910688	TGCCTCCTCGAATTGTATCC	57.089	50.000	0.00	0.00	0.00	2.59
2696	3801	3.134458	CCTTGCCTCCTCGAATTGTATC	58.866	50.000	0.00	0.00	0.00	2.24
2710	3815	1.296715	GATGACCACGTCCTTGCCT	59.703	57.895	0.00	0.00	0.00	4.75
2713	3818	2.160219	CACATTGATGACCACGTCCTTG	59.840	50.000	0.00	0.00	0.00	3.61
2728	3833	6.095300	TGGCAACTAGAATTATGTCCACATTG	59.905	38.462	0.00	0.00	36.06	2.82
2737	3842	4.392940	CCTCCCTGGCAACTAGAATTATG	58.607	47.826	0.00	0.00	37.61	1.90
2767	3872	2.033801	CCAAAGGATGATTCGACATGCC	59.966	50.000	4.25	1.64	38.95	4.40
2838	3943	3.945285	CACTCGGCATAGGGTGTAATTTT	59.055	43.478	0.00	0.00	37.80	1.82
2852	3957	1.204704	CCAGTTAGACATCACTCGGCA	59.795	52.381	0.00	0.00	0.00	5.69
2939	4805	0.694771	TGCTGGAAGGCTGAGAATGT	59.305	50.000	0.00	0.00	0.00	2.71
3098	4964	7.495934	GCCTATGCTAGTCAATTTAGAAGACAA	59.504	37.037	0.00	0.00	32.82	3.18
3197	5063	6.128200	CCCAAGATTTTAGGTGTTACCGTTAC	60.128	42.308	0.00	0.00	44.90	2.50
3215	5081	0.400213	TTGTCCGACTTGCCCAAGAT	59.600	50.000	14.46	0.00	40.79	2.40
3268	5134	6.556974	TGAGAGAGAAGATGACCATCAATT	57.443	37.500	12.01	0.00	40.22	2.32

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.