AutoCloner

Multiple sequence alignment - TraesCS1B01G013300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G013300	chr1B	100.000	3318	0	0	1	3318	6339695	6343012	0.000000e+00	6128.0
1	TraesCS1B01G013300	chr1B	94.458	3356	129	24	1	3318	629701733	629705069	0.000000e+00	5114.0
2	TraesCS1B01G013300	chr1B	98.183	2477	37	5	1	2471	6694213	6691739	0.000000e+00	4318.0
3	TraesCS1B01G013300	chr1B	92.931	778	53	2	1	777	6530763	6529987	0.000000e+00	1131.0
4	TraesCS1B01G013300	chr1B	82.762	1137	166	19	906	2027	7130214	7129093	0.000000e+00	987.0
5	TraesCS1B01G013300	chr1B	82.513	1138	170	18	905	2027	7928368	7927245	0.000000e+00	972.0
6	TraesCS1B01G013300	chr1B	82.074	1138	169	20	905	2027	6326385	6327502	0.000000e+00	939.0
7	TraesCS1B01G013300	chr1B	96.981	530	11	2	772	1297	6523803	6523275	0.000000e+00	885.0
8	TraesCS1B01G013300	chr1B	85.116	430	42	5	2838	3266	5737949	5738357	1.420000e-113	420.0
9	TraesCS1B01G013300	chr1B	83.862	378	38	15	2451	2809	6691724	6691351	4.100000e-89	339.0
10	TraesCS1B01G013300	chr1B	80.813	443	54	11	2870	3309	6554645	6554231	5.340000e-83	318.0
11	TraesCS1B01G013300	chr1B	85.714	70	5	4	809	875	496152020	496152087	5.940000e-08	69.4
12	TraesCS1B01G013300	chr1D	80.685	1636	220	48	905	2530	3227927	3229476	0.000000e+00	1182.0
13	TraesCS1B01G013300	chr1D	79.983	1144	187	28	906	2027	3122989	3124112	0.000000e+00	806.0
14	TraesCS1B01G013300	chr1D	82.828	792	109	20	905	1675	3614497	3615282	0.000000e+00	684.0
15	TraesCS1B01G013300	chr1D	82.176	432	60	8	2077	2493	3615610	3616039	4.070000e-94	355.0
16	TraesCS1B01G013300	chr1D	97.436	39	1	0	2936	2974	11356656	11356694	2.140000e-07	67.6
17	TraesCS1B01G013300	chr1D	84.848	66	6	3	808	871	74919652	74919589	2.760000e-06	63.9
18	TraesCS1B01G013300	chr1D	100.000	28	0	0	2936	2963	188426238	188426211	6.000000e-03	52.8
19	TraesCS1B01G013300	chr1A	82.122	867	137	8	1100	1959	6499048	6498193	0.000000e+00	726.0
20	TraesCS1B01G013300	chr1A	85.491	641	78	11	897	1536	6439204	6438578	0.000000e+00	654.0
21	TraesCS1B01G013300	chr1A	87.368	190	22	2	905	1092	6500193	6500004	2.000000e-52	217.0
22	TraesCS1B01G013300	chrUn	81.295	556	83	11	905	1443	9820636	9820085	6.580000e-117	431.0
23	TraesCS1B01G013300	chrUn	87.702	309	38	0	1392	1700	9820066	9819758	8.750000e-96	361.0
24	TraesCS1B01G013300	chrUn	83.102	361	53	7	2077	2433	9819459	9819103	4.130000e-84	322.0
25	TraesCS1B01G013300	chr7A	80.851	94	18	0	3005	3098	612701868	612701961	1.280000e-09	75.0
26	TraesCS1B01G013300	chr7A	89.286	56	2	3	813	867	210695155	210695103	2.140000e-07	67.6
27	TraesCS1B01G013300	chr3B	88.525	61	4	2	812	871	42492563	42492621	1.650000e-08	71.3
28	TraesCS1B01G013300	chr6A	87.097	62	5	2	813	873	208114370	208114429	2.140000e-07	67.6
29	TraesCS1B01G013300	chr5A	86.154	65	5	3	812	876	548285513	548285453	2.140000e-07	67.6
30	TraesCS1B01G013300	chr2A	86.441	59	8	0	2929	2987	751649326	751649268	7.680000e-07	65.8
31	TraesCS1B01G013300	chr4D	93.182	44	2	1	2936	2979	461000924	461000882	2.760000e-06	63.9
32	TraesCS1B01G013300	chr3A	100.000	28	0	0	2936	2963	491527202	491527229	6.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G013300	chr1B	6339695	6343012	3317	False	6128.000000	6128	100.0000	1	3318	1	chr1B.!!$F3	3317
1	TraesCS1B01G013300	chr1B	629701733	629705069	3336	False	5114.000000	5114	94.4580	1	3318	1	chr1B.!!$F5	3317
2	TraesCS1B01G013300	chr1B	6691351	6694213	2862	True	2328.500000	4318	91.0225	1	2809	2	chr1B.!!$R6	2808
3	TraesCS1B01G013300	chr1B	6529987	6530763	776	True	1131.000000	1131	92.9310	1	777	1	chr1B.!!$R2	776
4	TraesCS1B01G013300	chr1B	7129093	7130214	1121	True	987.000000	987	82.7620	906	2027	1	chr1B.!!$R4	1121
5	TraesCS1B01G013300	chr1B	7927245	7928368	1123	True	972.000000	972	82.5130	905	2027	1	chr1B.!!$R5	1122
6	TraesCS1B01G013300	chr1B	6326385	6327502	1117	False	939.000000	939	82.0740	905	2027	1	chr1B.!!$F2	1122
7	TraesCS1B01G013300	chr1B	6523275	6523803	528	True	885.000000	885	96.9810	772	1297	1	chr1B.!!$R1	525
8	TraesCS1B01G013300	chr1D	3227927	3229476	1549	False	1182.000000	1182	80.6850	905	2530	1	chr1D.!!$F2	1625
9	TraesCS1B01G013300	chr1D	3122989	3124112	1123	False	806.000000	806	79.9830	906	2027	1	chr1D.!!$F1	1121
10	TraesCS1B01G013300	chr1D	3614497	3616039	1542	False	519.500000	684	82.5020	905	2493	2	chr1D.!!$F4	1588
11	TraesCS1B01G013300	chr1A	6438578	6439204	626	True	654.000000	654	85.4910	897	1536	1	chr1A.!!$R1	639
12	TraesCS1B01G013300	chr1A	6498193	6500193	2000	True	471.500000	726	84.7450	905	1959	2	chr1A.!!$R2	1054
13	TraesCS1B01G013300	chrUn	9819103	9820636	1533	True	371.333333	431	84.0330	905	2433	3	chrUn.!!$R1	1528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
166	168	1.954651	GTTATAGCGCGCTCCACCC	60.955	63.158	40.23	18.9	0.0	4.61	F
664	668	3.178046	TCATGTAGTTAACCTCCCTGCA	58.822	45.455	0.88	0.0	0.0	4.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1550	2604	1.810030	GAAGCTCCCAAGTACGCCG	60.810	63.158	0.00	0.0	0.00	6.46	R
2661	3804	3.007398	TGTTGGGGTTTGACCATTAATGC	59.993	43.478	10.11	0.0	41.02	3.56	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
56	58	7.097192	TCCATGTTGTACTACATCTGAGTTTC	58.903	38.462	18.30	0.00	36.64	2.78
151	153	5.102313	CGCTCATCACTGTATTGTCTGTTA	58.898	41.667	0.00	0.00	0.00	2.41
166	168	1.954651	GTTATAGCGCGCTCCACCC	60.955	63.158	40.23	18.90	0.00	4.61
206	208	5.291905	AGTCCTTGCACCACTTATATACC	57.708	43.478	0.00	0.00	0.00	2.73
207	209	4.719773	AGTCCTTGCACCACTTATATACCA	59.280	41.667	0.00	0.00	0.00	3.25
654	658	8.717821	GCTTTTACAGTGTGATCATGTAGTTAA	58.282	33.333	5.88	0.18	31.50	2.01
664	668	3.178046	TCATGTAGTTAACCTCCCTGCA	58.822	45.455	0.88	0.00	0.00	4.41
762	766	4.768968	GGGCCATTCTTTATATGCAGTGAT	59.231	41.667	4.39	0.00	0.00	3.06
1147	2117	3.703001	TTGTGAATCCAGGTCTTCCTC	57.297	47.619	0.00	0.00	43.07	3.71
1282	2252	4.682860	ACGTAAACTGGTTATTCTGTCACG	59.317	41.667	0.00	0.00	0.00	4.35
1550	2604	6.256643	TCCAAAATATACAACCTACTCCCC	57.743	41.667	0.00	0.00	0.00	4.81
2524	3666	8.687292	TGATATTCTCTCCAAGAAATTGATGG	57.313	34.615	0.00	0.00	46.85	3.51
2644	3786	7.311092	TGATAAGTTTAGGTCTCAAACAGGA	57.689	36.000	0.00	0.00	38.16	3.86
2661	3804	3.565482	ACAGGACAAAACACTGTAGCATG	59.435	43.478	0.00	0.00	43.13	4.06
2664	3807	3.057315	GGACAAAACACTGTAGCATGCAT	60.057	43.478	21.98	7.68	0.00	3.96
2666	3809	5.335583	GGACAAAACACTGTAGCATGCATTA	60.336	40.000	21.98	0.73	0.00	1.90
2667	3810	6.083098	ACAAAACACTGTAGCATGCATTAA	57.917	33.333	21.98	1.09	0.00	1.40
2668	3811	6.690530	ACAAAACACTGTAGCATGCATTAAT	58.309	32.000	21.98	0.16	0.00	1.40
2669	3812	6.587226	ACAAAACACTGTAGCATGCATTAATG	59.413	34.615	21.98	11.27	0.00	1.90
2671	3814	4.272489	ACACTGTAGCATGCATTAATGGT	58.728	39.130	21.98	6.72	41.07	3.55
2672	3815	4.336433	ACACTGTAGCATGCATTAATGGTC	59.664	41.667	21.98	2.07	39.02	4.02
2673	3816	4.336153	CACTGTAGCATGCATTAATGGTCA	59.664	41.667	21.98	7.79	39.02	4.02
2674	3817	4.949238	ACTGTAGCATGCATTAATGGTCAA	59.051	37.500	21.98	0.00	39.02	3.18
2675	3818	5.418524	ACTGTAGCATGCATTAATGGTCAAA	59.581	36.000	21.98	0.00	39.02	2.69
2676	3819	5.649557	TGTAGCATGCATTAATGGTCAAAC	58.350	37.500	21.98	4.58	39.02	2.93
2677	3820	4.127566	AGCATGCATTAATGGTCAAACC	57.872	40.909	21.98	0.00	39.22	3.27
2678	3821	3.118665	AGCATGCATTAATGGTCAAACCC	60.119	43.478	21.98	0.00	37.50	4.11
2679	3822	3.795877	CATGCATTAATGGTCAAACCCC	58.204	45.455	17.02	0.00	37.50	4.95
2681	3824	3.242867	TGCATTAATGGTCAAACCCCAA	58.757	40.909	17.02	0.00	37.50	4.12
2682	3825	3.007398	TGCATTAATGGTCAAACCCCAAC	59.993	43.478	17.02	0.00	37.50	3.77
2683	3826	3.007398	GCATTAATGGTCAAACCCCAACA	59.993	43.478	17.02	0.00	37.50	3.33
2684	3827	4.323409	GCATTAATGGTCAAACCCCAACAT	60.323	41.667	17.02	0.00	37.50	2.71
2685	3828	5.418676	CATTAATGGTCAAACCCCAACATC	58.581	41.667	7.62	0.00	37.50	3.06
2686	3829	2.692709	ATGGTCAAACCCCAACATCA	57.307	45.000	0.00	0.00	37.50	3.07
2687	3830	1.993956	TGGTCAAACCCCAACATCAG	58.006	50.000	0.00	0.00	37.50	2.90
2688	3831	1.256812	GGTCAAACCCCAACATCAGG	58.743	55.000	0.00	0.00	30.04	3.86
2689	3832	1.203001	GGTCAAACCCCAACATCAGGA	60.203	52.381	0.00	0.00	30.04	3.86
2690	3833	2.557452	GGTCAAACCCCAACATCAGGAT	60.557	50.000	0.00	0.00	30.04	3.24
2691	3834	2.493278	GTCAAACCCCAACATCAGGATG	59.507	50.000	7.70	7.70	44.15	3.51
2692	3835	1.826720	CAAACCCCAACATCAGGATGG	59.173	52.381	13.40	0.00	42.91	3.51
2693	3836	1.381867	AACCCCAACATCAGGATGGA	58.618	50.000	13.40	0.00	42.91	3.41
2694	3837	1.612035	ACCCCAACATCAGGATGGAT	58.388	50.000	13.40	0.00	42.91	3.41
2695	3838	2.787956	ACCCCAACATCAGGATGGATA	58.212	47.619	13.40	0.00	42.91	2.59
2696	3839	2.443255	ACCCCAACATCAGGATGGATAC	59.557	50.000	13.40	0.00	42.91	2.24
2726	3882	1.875813	GCGTCAGGAGCATGTCGAG	60.876	63.158	6.02	0.00	34.33	4.04
2793	3949	2.805671	TGTCGGCACACTACTGAAATTG	59.194	45.455	0.00	0.00	0.00	2.32
2864	4021	5.106876	AGGCGCCCTTTTACTTCTTTATA	57.893	39.130	26.15	0.00	0.00	0.98
2865	4022	5.503002	AGGCGCCCTTTTACTTCTTTATAA	58.497	37.500	26.15	0.00	0.00	0.98
2866	4023	6.127101	AGGCGCCCTTTTACTTCTTTATAAT	58.873	36.000	26.15	0.00	0.00	1.28
2867	4024	6.605995	AGGCGCCCTTTTACTTCTTTATAATT	59.394	34.615	26.15	0.00	0.00	1.40
2868	4025	7.776500	AGGCGCCCTTTTACTTCTTTATAATTA	59.224	33.333	26.15	0.00	0.00	1.40
2894	4051	9.686683	AAGTTACTTATTATTCTGGATGCACTT	57.313	29.630	0.00	0.00	0.00	3.16
2918	4075	4.621068	ATGTTTGACGATGCAGTTATGG	57.379	40.909	0.00	0.00	0.00	2.74
2992	4149	2.708037	TATACTCCCCTAACCCGCAT	57.292	50.000	0.00	0.00	0.00	4.73
3049	4206	5.464030	AACTGTACACGAGATAACTTGGT	57.536	39.130	0.00	0.00	32.13	3.67
3050	4207	5.056894	ACTGTACACGAGATAACTTGGTC	57.943	43.478	0.00	0.00	32.13	4.02
3087	4244	2.406596	TTAAACACATCCTACCGCCC	57.593	50.000	0.00	0.00	0.00	6.13
3099	4256	2.094854	CCTACCGCCCATATTACGTCTC	60.095	54.545	0.00	0.00	0.00	3.36
3112	4269	8.830580	CCATATTACGTCTCAGATCAAATGTTT	58.169	33.333	0.00	0.00	0.00	2.83
3113	4270	9.642312	CATATTACGTCTCAGATCAAATGTTTG	57.358	33.333	0.00	0.00	39.48	2.93
3114	4271	7.672983	ATTACGTCTCAGATCAAATGTTTGT	57.327	32.000	0.00	0.00	39.18	2.83
3115	4272	5.348418	ACGTCTCAGATCAAATGTTTGTG	57.652	39.130	5.48	0.00	39.18	3.33
3118	4275	4.217118	GTCTCAGATCAAATGTTTGTGCCT	59.783	41.667	5.48	0.05	39.18	4.75
3122	4279	2.512485	TCAAATGTTTGTGCCTGCAG	57.488	45.000	6.78	6.78	39.18	4.41
3134	4291	4.363990	CTGCAGACGCCGTGGACT	62.364	66.667	8.42	0.00	37.32	3.85
3147	4304	3.793144	GGACTGCCAGCTTTCGCG	61.793	66.667	0.00	0.00	42.32	5.87
3150	4307	1.687494	GACTGCCAGCTTTCGCGTAG	61.687	60.000	5.77	6.30	42.32	3.51
3158	4315	0.294887	GCTTTCGCGTAGTGTGATCG	59.705	55.000	5.77	0.00	40.08	3.69
3168	4325	1.878522	GTGTGATCGCTACGGGCAG	60.879	63.158	7.94	0.00	41.91	4.85
3171	4328	4.971125	GATCGCTACGGGCAGGCC	62.971	72.222	1.81	1.81	41.91	5.19

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
56	58	6.072508	CGGATCCCATTTGTAAATATGTCAGG	60.073	42.308	6.06	0.00	0.00	3.86
166	168	1.337823	ACTAACGGCAGCTACAACTGG	60.338	52.381	0.00	0.00	38.16	4.00
206	208	1.073964	CAGTCATTCGTGAGGCTGTG	58.926	55.000	0.00	0.00	0.00	3.66
207	209	0.969149	TCAGTCATTCGTGAGGCTGT	59.031	50.000	0.00	0.00	0.00	4.40
465	469	2.075338	CTCTTCTTCTCAAGCAGGTGC	58.925	52.381	0.00	0.00	42.49	5.01
600	604	1.330655	ATGTGAGGTCCCTACGGCTG	61.331	60.000	0.00	0.00	0.00	4.85
654	658	1.002069	TCATGGATTTGCAGGGAGGT	58.998	50.000	0.00	0.00	0.00	3.85
762	766	6.071984	ACAACACACATAAATTAGTTGGGGA	58.928	36.000	0.00	0.00	40.29	4.81
1147	2117	3.855524	GCAACGGTTACACCAAAATCCAG	60.856	47.826	0.00	0.00	38.47	3.86
1550	2604	1.810030	GAAGCTCCCAAGTACGCCG	60.810	63.158	0.00	0.00	0.00	6.46
2524	3666	5.635700	GCATAACAGAGAGGGATCGAATTAC	59.364	44.000	0.00	0.00	0.00	1.89
2618	3760	8.383175	TCCTGTTTGAGACCTAAACTTATCAAT	58.617	33.333	0.00	0.00	38.50	2.57
2620	3762	7.159372	GTCCTGTTTGAGACCTAAACTTATCA	58.841	38.462	0.00	0.00	38.50	2.15
2623	3765	6.488769	TGTCCTGTTTGAGACCTAAACTTA	57.511	37.500	0.00	0.00	38.50	2.24
2637	3779	4.013728	TGCTACAGTGTTTTGTCCTGTTT	58.986	39.130	0.00	0.00	39.90	2.83
2644	3786	4.589216	AATGCATGCTACAGTGTTTTGT	57.411	36.364	20.33	0.00	35.09	2.83
2661	3804	3.007398	TGTTGGGGTTTGACCATTAATGC	59.993	43.478	10.11	0.00	41.02	3.56
2664	3807	4.483950	TGATGTTGGGGTTTGACCATTAA	58.516	39.130	0.00	0.00	41.02	1.40
2666	3809	2.899256	CTGATGTTGGGGTTTGACCATT	59.101	45.455	0.00	0.00	41.02	3.16
2667	3810	2.528564	CTGATGTTGGGGTTTGACCAT	58.471	47.619	0.00	0.00	41.02	3.55
2668	3811	1.480312	CCTGATGTTGGGGTTTGACCA	60.480	52.381	0.00	0.00	41.02	4.02
2669	3812	1.203001	TCCTGATGTTGGGGTTTGACC	60.203	52.381	0.00	0.00	37.60	4.02
2671	3814	2.557229	CCATCCTGATGTTGGGGTTTGA	60.557	50.000	6.40	0.00	37.11	2.69
2672	3815	1.826720	CCATCCTGATGTTGGGGTTTG	59.173	52.381	6.40	0.00	37.11	2.93
2673	3816	1.715931	TCCATCCTGATGTTGGGGTTT	59.284	47.619	6.40	0.00	37.11	3.27
2674	3817	1.381867	TCCATCCTGATGTTGGGGTT	58.618	50.000	6.40	0.00	37.11	4.11
2675	3818	1.612035	ATCCATCCTGATGTTGGGGT	58.388	50.000	6.40	0.00	37.11	4.95
2676	3819	2.442878	TGTATCCATCCTGATGTTGGGG	59.557	50.000	6.40	0.00	37.11	4.96
2677	3820	3.862877	TGTATCCATCCTGATGTTGGG	57.137	47.619	6.40	0.00	37.11	4.12
2678	3821	5.049198	CGAATTGTATCCATCCTGATGTTGG	60.049	44.000	6.40	0.00	37.11	3.77
2679	3822	5.049198	CCGAATTGTATCCATCCTGATGTTG	60.049	44.000	6.40	0.00	37.11	3.33
2681	3824	4.505566	CCCGAATTGTATCCATCCTGATGT	60.506	45.833	6.40	0.00	37.11	3.06
2682	3825	4.005650	CCCGAATTGTATCCATCCTGATG	58.994	47.826	0.00	0.00	38.51	3.07
2683	3826	3.009473	CCCCGAATTGTATCCATCCTGAT	59.991	47.826	0.00	0.00	0.00	2.90
2684	3827	2.371841	CCCCGAATTGTATCCATCCTGA	59.628	50.000	0.00	0.00	0.00	3.86
2685	3828	2.371841	TCCCCGAATTGTATCCATCCTG	59.628	50.000	0.00	0.00	0.00	3.86
2686	3829	2.639839	CTCCCCGAATTGTATCCATCCT	59.360	50.000	0.00	0.00	0.00	3.24
2687	3830	2.290323	CCTCCCCGAATTGTATCCATCC	60.290	54.545	0.00	0.00	0.00	3.51
2688	3831	2.876079	GCCTCCCCGAATTGTATCCATC	60.876	54.545	0.00	0.00	0.00	3.51
2689	3832	1.073923	GCCTCCCCGAATTGTATCCAT	59.926	52.381	0.00	0.00	0.00	3.41
2690	3833	0.472471	GCCTCCCCGAATTGTATCCA	59.528	55.000	0.00	0.00	0.00	3.41
2691	3834	0.602905	CGCCTCCCCGAATTGTATCC	60.603	60.000	0.00	0.00	0.00	2.59
2692	3835	0.106149	ACGCCTCCCCGAATTGTATC	59.894	55.000	0.00	0.00	0.00	2.24
2693	3836	0.106149	GACGCCTCCCCGAATTGTAT	59.894	55.000	0.00	0.00	0.00	2.29
2694	3837	1.259142	TGACGCCTCCCCGAATTGTA	61.259	55.000	0.00	0.00	0.00	2.41
2695	3838	2.267961	GACGCCTCCCCGAATTGT	59.732	61.111	0.00	0.00	0.00	2.71
2696	3839	1.815421	CTGACGCCTCCCCGAATTG	60.815	63.158	0.00	0.00	0.00	2.32
2697	3840	2.584608	CTGACGCCTCCCCGAATT	59.415	61.111	0.00	0.00	0.00	2.17
2726	3882	1.004745	TCCCTCTTGCCAAAGGATGAC	59.995	52.381	7.09	0.00	34.35	3.06
2810	3967	3.516300	TGGTCCTTTGCCGAGTATTTCTA	59.484	43.478	0.00	0.00	0.00	2.10
2868	4025	9.686683	AAGTGCATCCAGAATAATAAGTAACTT	57.313	29.630	0.00	0.00	0.00	2.66
2887	4044	4.478699	CATCGTCAAACATTGAAGTGCAT	58.521	39.130	0.00	0.00	42.15	3.96
2894	4051	5.391843	CCATAACTGCATCGTCAAACATTGA	60.392	40.000	0.00	0.00	37.33	2.57
2965	4122	5.628433	CGGGTTAGGGGAGTATATATTTGCC	60.628	48.000	0.00	0.00	0.00	4.52
2971	4128	3.831642	TGCGGGTTAGGGGAGTATATA	57.168	47.619	0.00	0.00	0.00	0.86
2975	4132	1.587066	AAATGCGGGTTAGGGGAGTA	58.413	50.000	0.00	0.00	0.00	2.59
3032	4189	3.705051	AGGGACCAAGTTATCTCGTGTA	58.295	45.455	0.00	0.00	0.00	2.90
3036	4193	4.202245	TCAAAGGGACCAAGTTATCTCG	57.798	45.455	0.00	0.00	0.00	4.04
3087	4244	9.642312	CAAACATTTGATCTGAGACGTAATATG	57.358	33.333	0.00	0.00	40.55	1.78
3099	4256	2.991190	GCAGGCACAAACATTTGATCTG	59.009	45.455	11.24	13.74	40.55	2.90
3118	4275	4.662961	CAGTCCACGGCGTCTGCA	62.663	66.667	10.85	0.00	45.35	4.41
3141	4298	2.355797	GCGATCACACTACGCGAAA	58.644	52.632	15.93	0.00	42.65	3.46
3147	4304	0.594284	GCCCGTAGCGATCACACTAC	60.594	60.000	7.25	7.25	36.28	2.73
3168	4325	4.740822	ATCAGGGTGTTGCGGGCC	62.741	66.667	0.00	0.00	0.00	5.80
3171	4328	0.039256	CACAAATCAGGGTGTTGCGG	60.039	55.000	0.00	0.00	0.00	5.69
3178	4335	1.909302	ACTCGATCCACAAATCAGGGT	59.091	47.619	0.00	0.00	0.00	4.34
3277	4434	9.784531	CAGTGACCATATTGTATTTCTCCTAAT	57.215	33.333	0.00	0.00	0.00	1.73
3280	4437	6.158695	ACCAGTGACCATATTGTATTTCTCCT	59.841	38.462	0.00	0.00	0.00	3.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.