Multiple sequence alignment - TraesCS1B01G013000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G013000 chr1B 100.000 2683 0 0 1 2683 6283924 6286606 0.000000e+00 4955.0
1 TraesCS1B01G013000 chr1B 87.173 1263 147 10 991 2249 6064224 6065475 0.000000e+00 1421.0
2 TraesCS1B01G013000 chr1B 86.922 1277 130 16 991 2249 5698691 5699948 0.000000e+00 1399.0
3 TraesCS1B01G013000 chr1B 86.941 850 80 12 1402 2249 629661883 629662703 0.000000e+00 926.0
4 TraesCS1B01G013000 chr1B 88.987 681 72 3 329 1007 5697967 5698646 0.000000e+00 839.0
5 TraesCS1B01G013000 chr1B 87.920 654 74 5 357 1007 6484672 6484021 0.000000e+00 765.0
6 TraesCS1B01G013000 chr1B 85.599 743 92 12 991 1723 7253209 7252472 0.000000e+00 765.0
7 TraesCS1B01G013000 chr1B 86.217 682 89 5 329 1007 5989042 5989721 0.000000e+00 734.0
8 TraesCS1B01G013000 chr1B 85.369 704 91 5 991 1688 5757887 5758584 0.000000e+00 719.0
9 TraesCS1B01G013000 chr1B 84.789 710 93 9 991 1688 6483976 6483270 0.000000e+00 699.0
10 TraesCS1B01G013000 chr1B 89.528 487 48 2 1734 2219 7698167 7697683 4.910000e-172 614.0
11 TraesCS1B01G013000 chr1B 83.008 665 92 13 991 1638 5989766 5990426 1.380000e-162 582.0
12 TraesCS1B01G013000 chr1B 88.848 269 24 2 1990 2252 22666220 22665952 2.580000e-85 326.0
13 TraesCS1B01G013000 chr1B 86.149 296 41 0 1 296 7339971 7340266 1.200000e-83 320.0
14 TraesCS1B01G013000 chr1B 83.612 299 45 3 1 297 22680566 22680270 7.320000e-71 278.0
15 TraesCS1B01G013000 chr1B 83.051 295 48 2 1 294 629655506 629655799 1.580000e-67 267.0
16 TraesCS1B01G013000 chr1B 94.000 150 6 2 2248 2395 629662753 629662901 9.670000e-55 224.0
17 TraesCS1B01G013000 chr1B 88.889 153 11 3 2248 2395 22665905 22665754 1.640000e-42 183.0
18 TraesCS1B01G013000 chr1B 84.884 172 21 5 2080 2249 7345149 7345317 4.590000e-38 169.0
19 TraesCS1B01G013000 chr1B 86.986 146 17 1 2517 2662 22299467 22299324 2.140000e-36 163.0
20 TraesCS1B01G013000 chr1B 93.396 106 4 1 2248 2350 7345367 7345472 1.290000e-33 154.0
21 TraesCS1B01G013000 chr1B 88.800 125 13 1 1865 1988 6483134 6483010 4.630000e-33 152.0
22 TraesCS1B01G013000 chr1B 90.909 99 8 1 2565 2662 7697329 7697231 6.030000e-27 132.0
23 TraesCS1B01G013000 chr1B 88.889 54 5 1 2543 2595 7251749 7251696 6.200000e-07 65.8
24 TraesCS1B01G013000 chr1A 85.737 1262 146 19 991 2239 6294845 6293605 0.000000e+00 1303.0
25 TraesCS1B01G013000 chr1A 88.856 682 71 5 329 1007 4500806 4501485 0.000000e+00 833.0
26 TraesCS1B01G013000 chr1A 88.227 671 76 3 339 1007 5502937 5502268 0.000000e+00 798.0
27 TraesCS1B01G013000 chr1A 87.262 683 80 7 329 1007 4505017 4505696 0.000000e+00 773.0
28 TraesCS1B01G013000 chr1A 87.054 672 82 5 339 1007 6338203 6337534 0.000000e+00 754.0
29 TraesCS1B01G013000 chr1A 83.502 297 40 7 10 297 4500535 4500831 4.400000e-68 268.0
30 TraesCS1B01G013000 chr1A 92.683 82 3 1 2248 2326 6293559 6293478 6.070000e-22 115.0
31 TraesCS1B01G013000 chr1A 85.981 107 10 1 1990 2096 4502238 4502339 2.820000e-20 110.0
32 TraesCS1B01G013000 chr1A 85.981 107 10 1 1990 2096 5500339 5500238 2.820000e-20 110.0
33 TraesCS1B01G013000 chr1D 82.554 1026 120 24 991 2011 3971286 3970315 0.000000e+00 848.0
34 TraesCS1B01G013000 chr1D 86.189 753 93 5 991 1739 74010 73265 0.000000e+00 804.0
35 TraesCS1B01G013000 chr1D 85.034 735 102 6 991 1723 4217495 4216767 0.000000e+00 741.0
36 TraesCS1B01G013000 chr1D 85.924 682 91 5 329 1007 5132188 5131509 0.000000e+00 723.0
37 TraesCS1B01G013000 chr1D 85.505 683 92 7 329 1007 74734 74055 0.000000e+00 706.0
38 TraesCS1B01G013000 chr1D 86.532 297 40 0 1 297 75005 74709 7.160000e-86 327.0
39 TraesCS1B01G013000 chr1D 85.235 298 42 2 1 297 3972281 3971985 3.360000e-79 305.0
40 TraesCS1B01G013000 chr1D 86.770 257 32 2 42 297 4196196 4195941 4.370000e-73 285.0
41 TraesCS1B01G013000 chr1D 88.128 219 21 1 1990 2203 5130761 5130543 3.430000e-64 255.0
42 TraesCS1B01G013000 chr1D 82.007 289 26 12 2397 2659 4762749 4762461 3.480000e-54 222.0
43 TraesCS1B01G013000 chr1D 88.679 159 17 1 2045 2203 3970310 3970153 2.730000e-45 193.0
44 TraesCS1B01G013000 chr1D 87.742 155 17 1 2508 2662 3374229 3374381 2.120000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G013000 chr1B 6283924 6286606 2682 False 4955.000000 4955 100.000000 1 2683 1 chr1B.!!$F3 2682
1 TraesCS1B01G013000 chr1B 6064224 6065475 1251 False 1421.000000 1421 87.173000 991 2249 1 chr1B.!!$F2 1258
2 TraesCS1B01G013000 chr1B 5697967 5699948 1981 False 1119.000000 1399 87.954500 329 2249 2 chr1B.!!$F6 1920
3 TraesCS1B01G013000 chr1B 5757887 5758584 697 False 719.000000 719 85.369000 991 1688 1 chr1B.!!$F1 697
4 TraesCS1B01G013000 chr1B 5989042 5990426 1384 False 658.000000 734 84.612500 329 1638 2 chr1B.!!$F7 1309
5 TraesCS1B01G013000 chr1B 629661883 629662901 1018 False 575.000000 926 90.470500 1402 2395 2 chr1B.!!$F9 993
6 TraesCS1B01G013000 chr1B 6483010 6484672 1662 True 538.666667 765 87.169667 357 1988 3 chr1B.!!$R3 1631
7 TraesCS1B01G013000 chr1B 7251696 7253209 1513 True 415.400000 765 87.244000 991 2595 2 chr1B.!!$R4 1604
8 TraesCS1B01G013000 chr1B 7697231 7698167 936 True 373.000000 614 90.218500 1734 2662 2 chr1B.!!$R5 928
9 TraesCS1B01G013000 chr1A 6337534 6338203 669 True 754.000000 754 87.054000 339 1007 1 chr1A.!!$R1 668
10 TraesCS1B01G013000 chr1A 6293478 6294845 1367 True 709.000000 1303 89.210000 991 2326 2 chr1A.!!$R3 1335
11 TraesCS1B01G013000 chr1A 4500535 4505696 5161 False 496.000000 833 86.400250 10 2096 4 chr1A.!!$F1 2086
12 TraesCS1B01G013000 chr1A 5500238 5502937 2699 True 454.000000 798 87.104000 339 2096 2 chr1A.!!$R2 1757
13 TraesCS1B01G013000 chr1D 4216767 4217495 728 True 741.000000 741 85.034000 991 1723 1 chr1D.!!$R2 732
14 TraesCS1B01G013000 chr1D 73265 75005 1740 True 612.333333 804 86.075333 1 1739 3 chr1D.!!$R4 1738
15 TraesCS1B01G013000 chr1D 5130543 5132188 1645 True 489.000000 723 87.026000 329 2203 2 chr1D.!!$R6 1874
16 TraesCS1B01G013000 chr1D 3970153 3972281 2128 True 448.666667 848 85.489333 1 2203 3 chr1D.!!$R5 2202

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.589223 CAGCGTTTCCTGCCGTAAAA 59.411 50.000 0.0 0.0 0.0 1.52 F
53 54 1.002142 GCGTTTCCTGCCGTAAAAGTT 60.002 47.619 0.0 0.0 0.0 2.66 F
270 280 1.002430 TGACCAATCTGACACTGAGGC 59.998 52.381 0.0 0.0 0.0 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1069 1150 1.945394 GCCAGCACAGTTCCATATCAG 59.055 52.381 0.0 0.0 0.00 2.90 R
1071 1152 2.042686 TGCCAGCACAGTTCCATATC 57.957 50.000 0.0 0.0 0.00 1.63 R
2057 3718 0.583438 CTGCGACACAGTTCAGTTGG 59.417 55.000 0.0 0.0 41.86 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.304939 GAGGTGGTTATAGATTGGTACGC 58.695 47.826 0.00 0.00 0.00 4.42
45 46 3.793144 GCTCAGCGTTTCCTGCCG 61.793 66.667 0.00 0.00 32.87 5.69
50 51 0.589223 CAGCGTTTCCTGCCGTAAAA 59.411 50.000 0.00 0.00 0.00 1.52
53 54 1.002142 GCGTTTCCTGCCGTAAAAGTT 60.002 47.619 0.00 0.00 0.00 2.66
65 66 5.242838 TGCCGTAAAAGTTCTCAAAATGGAT 59.757 36.000 0.00 0.00 0.00 3.41
77 78 6.882656 TCTCAAAATGGATGACTTAGAGAGG 58.117 40.000 0.00 0.00 0.00 3.69
109 119 2.019984 GGATGCAGTTGAAGGGACATC 58.980 52.381 0.00 0.00 34.54 3.06
110 120 2.618816 GGATGCAGTTGAAGGGACATCA 60.619 50.000 0.00 0.00 36.49 3.07
138 148 5.947228 TCAGCTTGAGAAACTACCAATTG 57.053 39.130 0.00 0.00 0.00 2.32
139 149 5.376625 TCAGCTTGAGAAACTACCAATTGT 58.623 37.500 4.43 0.00 0.00 2.71
167 177 4.079787 TGCCCAAAGATAGCAGATTTACCT 60.080 41.667 0.00 0.00 31.65 3.08
184 194 2.024414 ACCTGAAGCACCAAAACTCAC 58.976 47.619 0.00 0.00 0.00 3.51
265 275 5.233083 TCTTCATTGACCAATCTGACACT 57.767 39.130 0.00 0.00 0.00 3.55
266 276 4.999311 TCTTCATTGACCAATCTGACACTG 59.001 41.667 0.00 0.00 0.00 3.66
267 277 4.622260 TCATTGACCAATCTGACACTGA 57.378 40.909 0.00 0.00 0.00 3.41
268 278 4.572909 TCATTGACCAATCTGACACTGAG 58.427 43.478 0.00 0.00 0.00 3.35
269 279 3.407424 TTGACCAATCTGACACTGAGG 57.593 47.619 0.00 0.00 0.00 3.86
270 280 1.002430 TGACCAATCTGACACTGAGGC 59.998 52.381 0.00 0.00 0.00 4.70
271 281 1.277557 GACCAATCTGACACTGAGGCT 59.722 52.381 0.00 0.00 0.00 4.58
272 282 2.497675 GACCAATCTGACACTGAGGCTA 59.502 50.000 0.00 0.00 0.00 3.93
273 283 2.499289 ACCAATCTGACACTGAGGCTAG 59.501 50.000 0.00 0.00 0.00 3.42
274 284 2.762887 CCAATCTGACACTGAGGCTAGA 59.237 50.000 0.00 0.00 0.00 2.43
275 285 3.196469 CCAATCTGACACTGAGGCTAGAA 59.804 47.826 0.00 0.00 0.00 2.10
276 286 4.431809 CAATCTGACACTGAGGCTAGAAG 58.568 47.826 0.00 0.00 0.00 2.85
277 287 3.441500 TCTGACACTGAGGCTAGAAGA 57.558 47.619 0.00 0.00 0.00 2.87
278 288 3.085533 TCTGACACTGAGGCTAGAAGAC 58.914 50.000 0.00 0.00 0.00 3.01
279 289 2.822561 CTGACACTGAGGCTAGAAGACA 59.177 50.000 0.00 0.00 0.00 3.41
280 290 2.558795 TGACACTGAGGCTAGAAGACAC 59.441 50.000 0.00 0.00 0.00 3.67
281 291 2.558795 GACACTGAGGCTAGAAGACACA 59.441 50.000 0.00 0.00 0.00 3.72
282 292 2.560542 ACACTGAGGCTAGAAGACACAG 59.439 50.000 5.76 5.76 45.80 3.66
283 293 2.822561 CACTGAGGCTAGAAGACACAGA 59.177 50.000 13.23 0.00 43.51 3.41
284 294 3.256879 CACTGAGGCTAGAAGACACAGAA 59.743 47.826 13.23 0.00 43.51 3.02
285 295 3.898123 ACTGAGGCTAGAAGACACAGAAA 59.102 43.478 13.23 0.00 43.51 2.52
286 296 4.530161 ACTGAGGCTAGAAGACACAGAAAT 59.470 41.667 13.23 0.00 43.51 2.17
287 297 5.717178 ACTGAGGCTAGAAGACACAGAAATA 59.283 40.000 13.23 0.00 43.51 1.40
288 298 6.211584 ACTGAGGCTAGAAGACACAGAAATAA 59.788 38.462 13.23 0.00 43.51 1.40
289 299 6.398918 TGAGGCTAGAAGACACAGAAATAAC 58.601 40.000 0.00 0.00 0.00 1.89
290 300 6.014584 TGAGGCTAGAAGACACAGAAATAACA 60.015 38.462 0.00 0.00 0.00 2.41
291 301 6.951971 AGGCTAGAAGACACAGAAATAACAT 58.048 36.000 0.00 0.00 0.00 2.71
292 302 7.044798 AGGCTAGAAGACACAGAAATAACATC 58.955 38.462 0.00 0.00 0.00 3.06
293 303 6.818644 GGCTAGAAGACACAGAAATAACATCA 59.181 38.462 0.00 0.00 0.00 3.07
294 304 7.010923 GGCTAGAAGACACAGAAATAACATCAG 59.989 40.741 0.00 0.00 0.00 2.90
295 305 7.761704 GCTAGAAGACACAGAAATAACATCAGA 59.238 37.037 0.00 0.00 0.00 3.27
296 306 9.299963 CTAGAAGACACAGAAATAACATCAGAG 57.700 37.037 0.00 0.00 0.00 3.35
297 307 7.901029 AGAAGACACAGAAATAACATCAGAGA 58.099 34.615 0.00 0.00 0.00 3.10
298 308 7.816995 AGAAGACACAGAAATAACATCAGAGAC 59.183 37.037 0.00 0.00 0.00 3.36
299 309 6.997655 AGACACAGAAATAACATCAGAGACA 58.002 36.000 0.00 0.00 0.00 3.41
300 310 7.445121 AGACACAGAAATAACATCAGAGACAA 58.555 34.615 0.00 0.00 0.00 3.18
301 311 7.386299 AGACACAGAAATAACATCAGAGACAAC 59.614 37.037 0.00 0.00 0.00 3.32
302 312 6.992123 ACACAGAAATAACATCAGAGACAACA 59.008 34.615 0.00 0.00 0.00 3.33
303 313 7.663081 ACACAGAAATAACATCAGAGACAACAT 59.337 33.333 0.00 0.00 0.00 2.71
304 314 8.173775 CACAGAAATAACATCAGAGACAACATC 58.826 37.037 0.00 0.00 0.00 3.06
305 315 7.879677 ACAGAAATAACATCAGAGACAACATCA 59.120 33.333 0.00 0.00 0.00 3.07
306 316 8.388853 CAGAAATAACATCAGAGACAACATCAG 58.611 37.037 0.00 0.00 0.00 2.90
307 317 8.316946 AGAAATAACATCAGAGACAACATCAGA 58.683 33.333 0.00 0.00 0.00 3.27
308 318 8.489990 AAATAACATCAGAGACAACATCAGAG 57.510 34.615 0.00 0.00 0.00 3.35
309 319 4.468765 ACATCAGAGACAACATCAGAGG 57.531 45.455 0.00 0.00 0.00 3.69
310 320 4.092279 ACATCAGAGACAACATCAGAGGA 58.908 43.478 0.00 0.00 0.00 3.71
311 321 4.715792 ACATCAGAGACAACATCAGAGGAT 59.284 41.667 0.00 0.00 0.00 3.24
324 334 3.687551 ATCAGAGGATGCTCCAATTGTGG 60.688 47.826 11.06 0.00 39.61 4.17
350 360 8.594881 AGTTAGAACTCATAGAAACAACACTG 57.405 34.615 0.00 0.00 32.86 3.66
351 361 8.421784 AGTTAGAACTCATAGAAACAACACTGA 58.578 33.333 0.00 0.00 32.86 3.41
352 362 8.704234 GTTAGAACTCATAGAAACAACACTGAG 58.296 37.037 0.00 0.00 36.92 3.35
354 364 4.319177 ACTCATAGAAACAACACTGAGGC 58.681 43.478 0.00 0.00 35.55 4.70
382 393 2.159627 GCACTTCAATTGTACCGGTGAG 59.840 50.000 19.93 4.60 0.00 3.51
399 410 3.688673 GGTGAGAGCAAAGAGAAATGGAG 59.311 47.826 0.00 0.00 0.00 3.86
401 412 3.008813 TGAGAGCAAAGAGAAATGGAGCT 59.991 43.478 0.00 0.00 0.00 4.09
413 424 5.227593 AGAAATGGAGCTAGAAATCCCCTA 58.772 41.667 0.00 0.00 34.47 3.53
443 454 1.350684 TGGAGTTAGGATGCTGCAACA 59.649 47.619 6.36 0.00 30.30 3.33
444 455 2.224744 TGGAGTTAGGATGCTGCAACAA 60.225 45.455 6.36 0.00 30.30 2.83
456 467 3.384146 TGCTGCAACAAATTCTTTGGAGA 59.616 39.130 18.87 6.62 42.15 3.71
493 504 3.682858 CGTGGGACTATTTTGTACACCTG 59.317 47.826 0.00 0.00 0.00 4.00
499 510 6.436218 GGGACTATTTTGTACACCTGGAAAAT 59.564 38.462 0.00 4.55 33.64 1.82
513 524 6.426633 CACCTGGAAAATTTGGAAATTGGTAC 59.573 38.462 0.00 0.00 38.53 3.34
516 527 7.334171 CCTGGAAAATTTGGAAATTGGTACATC 59.666 37.037 0.00 0.00 38.53 3.06
602 613 5.569059 GTGATTACAAACTGCGAAAATCTGG 59.431 40.000 0.00 0.00 0.00 3.86
612 623 2.880890 GCGAAAATCTGGCTGGATATGT 59.119 45.455 0.00 0.00 0.00 2.29
683 694 4.390264 AGGTTTGGAGTCTCTTTGCTTAC 58.610 43.478 0.00 0.00 0.00 2.34
686 697 5.241728 GGTTTGGAGTCTCTTTGCTTACAAT 59.758 40.000 0.00 0.00 35.21 2.71
739 750 3.519510 TCCCGACATCTCTCAAGGAAATT 59.480 43.478 0.00 0.00 0.00 1.82
765 776 8.469309 AATATTAGTGGATGCATTAAGCTTGT 57.531 30.769 9.86 0.00 45.94 3.16
775 786 6.528537 TGCATTAAGCTTGTGTCCATATTT 57.471 33.333 9.86 0.00 45.94 1.40
820 831 7.039363 CCATAGTTAGTCCAAGGATCTTCTAGG 60.039 44.444 0.00 0.00 0.00 3.02
879 890 3.474600 CATCCTCACCCATGAATCACTC 58.525 50.000 0.00 0.00 33.30 3.51
897 908 4.125703 CACTCTTGTCCATGCCTAGAATC 58.874 47.826 0.00 0.00 0.00 2.52
946 957 1.678728 CCAGCGGTTCTAAATCTGCCA 60.679 52.381 0.00 0.00 36.71 4.92
1048 1129 3.318839 TGCTGCAAGTGAGCATTTACTTT 59.681 39.130 0.00 0.00 44.68 2.66
1051 1132 5.106555 GCTGCAAGTGAGCATTTACTTTCTA 60.107 40.000 0.00 0.00 44.68 2.10
1069 1150 3.478509 TCTACCCATCTCGAAGCTCTAC 58.521 50.000 0.00 0.00 0.00 2.59
1071 1152 2.028130 ACCCATCTCGAAGCTCTACTG 58.972 52.381 0.00 0.00 0.00 2.74
1177 1258 1.079543 ACATCGCTGGAGTGTCTGC 60.080 57.895 0.00 0.00 0.00 4.26
1226 1308 4.574599 ACCTTGTTCTTCAAAGATGCAC 57.425 40.909 0.00 0.00 35.48 4.57
1228 1310 4.037208 ACCTTGTTCTTCAAAGATGCACTG 59.963 41.667 0.00 0.00 35.48 3.66
1233 1315 1.471684 CTTCAAAGATGCACTGCCCTC 59.528 52.381 0.00 0.00 0.00 4.30
1258 1340 1.503542 CTGCCGAATGAGCCACAAC 59.496 57.895 0.00 0.00 0.00 3.32
1270 1352 4.820897 TGAGCCACAACTATACAGTTCTG 58.179 43.478 0.00 0.00 43.30 3.02
1274 1356 4.865365 GCCACAACTATACAGTTCTGTCTC 59.135 45.833 8.80 0.00 43.30 3.36
1292 1374 7.599171 TCTGTCTCGTATCTTCAAATTACACA 58.401 34.615 0.00 0.00 0.00 3.72
1326 1408 3.336509 AAGAAGCTCCCTAGATGCCTA 57.663 47.619 0.00 0.00 0.00 3.93
1343 1428 0.890542 CTACAGCAGCAACTGGGCAA 60.891 55.000 10.35 0.00 42.21 4.52
1416 1507 5.359009 ACATCCTTCTATCTTTGCCACATTG 59.641 40.000 0.00 0.00 0.00 2.82
1419 1510 6.009589 TCCTTCTATCTTTGCCACATTGAAA 58.990 36.000 0.00 0.00 0.00 2.69
1568 1675 8.817100 GTTAATCTGACGTCATTTGTGATATGA 58.183 33.333 20.40 8.96 0.00 2.15
1626 1742 2.016905 ACCAAGGCTAGTCTGTGAGT 57.983 50.000 0.00 0.00 0.00 3.41
1709 1890 1.264295 GGAAACCACGTAGAGAGGGT 58.736 55.000 0.00 0.00 33.73 4.34
1757 1939 2.341257 ACAAGATCATGTCGTGACTGC 58.659 47.619 14.48 0.00 40.28 4.40
1778 1960 3.366273 GCAATCAATCGGCTTTGTTGAGA 60.366 43.478 12.13 0.00 35.56 3.27
1783 1965 2.704725 TCGGCTTTGTTGAGATTTGC 57.295 45.000 0.00 0.00 0.00 3.68
1836 2018 0.596082 CAAACGAATCTGCCCGGTTT 59.404 50.000 0.00 0.00 32.93 3.27
1873 2055 8.580720 AGGATAATATACTCACATGTGTGTCTC 58.419 37.037 30.80 19.18 45.76 3.36
1875 2057 9.619316 GATAATATACTCACATGTGTGTCTCTC 57.381 37.037 30.80 17.97 45.76 3.20
1882 2064 3.864003 CACATGTGTGTCTCTCAGCTATG 59.136 47.826 18.03 0.00 40.96 2.23
1897 2080 8.219546 TCTCAGCTATGTATGTATCTATCTGC 57.780 38.462 0.00 0.00 0.00 4.26
1932 2116 6.726490 TTAGTTAACTGAGAAGACACTGGT 57.274 37.500 18.56 0.00 0.00 4.00
1971 2156 7.713764 ATAAACAATTTCAACTGTGGCTTTC 57.286 32.000 0.00 0.00 0.00 2.62
2057 3718 1.760192 ATGGCCTGTGATTGCTTCTC 58.240 50.000 3.32 0.00 0.00 2.87
2071 3732 2.092968 TGCTTCTCCAACTGAACTGTGT 60.093 45.455 0.00 0.00 0.00 3.72
2097 3775 0.734253 CGCTCTTGGTCGAGAACTGG 60.734 60.000 0.00 0.00 32.74 4.00
2188 3900 5.415701 GGCCAAGACTATCTCATTTTGTTCA 59.584 40.000 0.00 0.00 0.00 3.18
2295 5906 7.391554 TGACCTTTATCTTGTTCAAGATTCAGG 59.608 37.037 28.35 28.35 40.11 3.86
2316 6833 5.030820 AGGTACTTGCCAGGTTTAGTAGAT 58.969 41.667 0.00 0.00 27.25 1.98
2379 6898 4.091655 GCCTCGTTACTTTAGTTGAGAAGC 59.908 45.833 7.59 0.00 0.00 3.86
2409 7038 3.502123 TTAACTACCCTGCTTGCTTGT 57.498 42.857 0.00 0.00 0.00 3.16
2410 7039 1.609208 AACTACCCTGCTTGCTTGTG 58.391 50.000 0.00 0.00 0.00 3.33
2424 7053 2.423892 TGCTTGTGGCGAAGTTTTACAA 59.576 40.909 0.00 0.00 45.43 2.41
2426 7055 3.860536 GCTTGTGGCGAAGTTTTACAAAA 59.139 39.130 0.00 0.00 31.67 2.44
2451 7080 2.592861 GAGGTGCGGGATGGATGC 60.593 66.667 0.00 0.00 0.00 3.91
2452 7081 4.195334 AGGTGCGGGATGGATGCC 62.195 66.667 0.00 0.00 34.56 4.40
2454 7083 3.211963 GTGCGGGATGGATGCCAC 61.212 66.667 0.00 0.00 38.32 5.01
2462 7097 1.142465 GGATGGATGCCACATCTCTGT 59.858 52.381 7.45 0.00 43.25 3.41
2475 7110 7.046652 GCCACATCTCTGTATTATGCAGATAT 58.953 38.462 13.04 9.04 41.49 1.63
2505 7227 7.516198 ACAGACAGTTAAGAAGCAATTTCAT 57.484 32.000 0.00 0.00 38.31 2.57
2507 7229 6.740002 CAGACAGTTAAGAAGCAATTTCATCG 59.260 38.462 0.00 0.00 38.31 3.84
2510 7232 6.204688 ACAGTTAAGAAGCAATTTCATCGTCA 59.795 34.615 0.00 0.00 38.31 4.35
2512 7234 6.650807 AGTTAAGAAGCAATTTCATCGTCAGA 59.349 34.615 0.00 0.00 38.31 3.27
2513 7235 4.935885 AGAAGCAATTTCATCGTCAGAC 57.064 40.909 0.00 0.00 38.31 3.51
2514 7236 3.369147 AGAAGCAATTTCATCGTCAGACG 59.631 43.478 17.33 17.33 39.56 4.18
2515 7237 4.855841 AGAAGCAATTTCATCGTCAGACGA 60.856 41.667 27.27 27.27 43.19 4.20
2526 7248 1.585668 CGTCAGACGATTAAGCAGCAG 59.414 52.381 18.63 0.00 46.05 4.24
2528 7250 1.066929 TCAGACGATTAAGCAGCAGCA 60.067 47.619 3.17 0.00 45.49 4.41
2529 7251 1.326852 CAGACGATTAAGCAGCAGCAG 59.673 52.381 3.17 0.00 45.49 4.24
2532 7254 0.027716 CGATTAAGCAGCAGCAGCAG 59.972 55.000 12.92 0.00 45.49 4.24
2533 7255 0.381089 GATTAAGCAGCAGCAGCAGG 59.619 55.000 12.92 0.00 45.49 4.85
2535 7257 1.239296 TTAAGCAGCAGCAGCAGGTG 61.239 55.000 12.92 12.39 45.49 4.00
2537 7259 3.735029 GCAGCAGCAGCAGGTGTC 61.735 66.667 17.23 7.15 44.89 3.67
2539 7261 2.032223 AGCAGCAGCAGGTGTCAG 59.968 61.111 10.14 0.00 44.89 3.51
2543 7265 1.436600 CAGCAGCAGGTGTCAGTTAG 58.563 55.000 0.66 0.00 38.42 2.34
2545 7267 1.301677 GCAGCAGGTGTCAGTTAGGC 61.302 60.000 0.66 0.00 0.00 3.93
2546 7268 0.674895 CAGCAGGTGTCAGTTAGGCC 60.675 60.000 0.00 0.00 0.00 5.19
2547 7269 1.741770 GCAGGTGTCAGTTAGGCCG 60.742 63.158 0.00 0.00 0.00 6.13
2549 7271 2.436115 GGTGTCAGTTAGGCCGGC 60.436 66.667 21.18 21.18 0.00 6.13
2550 7272 2.345991 GTGTCAGTTAGGCCGGCA 59.654 61.111 30.85 5.28 0.00 5.69
2622 7353 5.638596 TCGACAGTTGAATTACTCTGCTA 57.361 39.130 0.00 0.00 0.00 3.49
2627 7358 5.814705 ACAGTTGAATTACTCTGCTATGCTC 59.185 40.000 0.00 0.00 0.00 4.26
2656 7388 1.327303 TGTTTGCTTGCGGAGGAATT 58.673 45.000 0.00 0.00 37.12 2.17
2659 7391 3.509575 TGTTTGCTTGCGGAGGAATTAAT 59.490 39.130 0.00 0.00 37.12 1.40
2662 7394 5.906113 TTGCTTGCGGAGGAATTAATTTA 57.094 34.783 1.43 0.00 37.12 1.40
2663 7395 6.463995 TTGCTTGCGGAGGAATTAATTTAT 57.536 33.333 1.43 0.00 37.12 1.40
2664 7396 5.830912 TGCTTGCGGAGGAATTAATTTATG 58.169 37.500 1.43 0.00 37.12 1.90
2665 7397 5.359576 TGCTTGCGGAGGAATTAATTTATGT 59.640 36.000 1.43 0.00 37.12 2.29
2666 7398 6.544197 TGCTTGCGGAGGAATTAATTTATGTA 59.456 34.615 1.43 0.00 37.12 2.29
2667 7399 7.230510 TGCTTGCGGAGGAATTAATTTATGTAT 59.769 33.333 1.43 0.00 37.12 2.29
2668 7400 8.082242 GCTTGCGGAGGAATTAATTTATGTATT 58.918 33.333 1.43 0.00 37.12 1.89
2669 7401 9.612620 CTTGCGGAGGAATTAATTTATGTATTC 57.387 33.333 1.43 0.00 37.12 1.75
2670 7402 8.918202 TGCGGAGGAATTAATTTATGTATTCT 57.082 30.769 1.43 0.00 0.00 2.40
2671 7403 9.349713 TGCGGAGGAATTAATTTATGTATTCTT 57.650 29.630 1.43 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.163385 CGTACCAATCTATAACCACCTCCAA 60.163 44.000 0.00 0.00 0.00 3.53
29 30 0.669318 TTACGGCAGGAAACGCTGAG 60.669 55.000 0.00 0.00 38.84 3.35
35 36 3.562557 TGAGAACTTTTACGGCAGGAAAC 59.437 43.478 0.00 0.00 0.00 2.78
50 51 7.911651 TCTCTAAGTCATCCATTTTGAGAACT 58.088 34.615 0.00 0.00 32.51 3.01
53 54 6.441924 ACCTCTCTAAGTCATCCATTTTGAGA 59.558 38.462 0.00 0.00 33.73 3.27
65 66 5.420421 CCATCTCTGAAACCTCTCTAAGTCA 59.580 44.000 0.00 0.00 0.00 3.41
71 72 3.481559 TCCCATCTCTGAAACCTCTCT 57.518 47.619 0.00 0.00 0.00 3.10
77 78 2.996631 ACTGCATCCCATCTCTGAAAC 58.003 47.619 0.00 0.00 0.00 2.78
109 119 5.123027 GGTAGTTTCTCAAGCTGAGGAAATG 59.877 44.000 13.84 0.00 43.15 2.32
110 120 5.221925 TGGTAGTTTCTCAAGCTGAGGAAAT 60.222 40.000 10.56 10.56 43.15 2.17
139 149 2.241941 TCTGCTATCTTTGGGCATTCCA 59.758 45.455 0.00 0.00 45.43 3.53
141 151 5.526506 AAATCTGCTATCTTTGGGCATTC 57.473 39.130 0.00 0.00 35.37 2.67
153 163 4.080356 TGGTGCTTCAGGTAAATCTGCTAT 60.080 41.667 0.00 0.00 34.91 2.97
157 167 5.010012 AGTTTTGGTGCTTCAGGTAAATCTG 59.990 40.000 0.00 0.00 36.17 2.90
167 177 2.722094 ACAGTGAGTTTTGGTGCTTCA 58.278 42.857 0.00 0.00 0.00 3.02
184 194 9.455847 GCTTGCCATCTTTAATTTCTAATACAG 57.544 33.333 0.00 0.00 0.00 2.74
198 208 3.965694 AGATCTCTTGCTTGCCATCTTT 58.034 40.909 0.00 0.00 0.00 2.52
265 275 6.014584 TGTTATTTCTGTGTCTTCTAGCCTCA 60.015 38.462 0.00 0.00 0.00 3.86
266 276 6.398918 TGTTATTTCTGTGTCTTCTAGCCTC 58.601 40.000 0.00 0.00 0.00 4.70
267 277 6.360370 TGTTATTTCTGTGTCTTCTAGCCT 57.640 37.500 0.00 0.00 0.00 4.58
268 278 6.818644 TGATGTTATTTCTGTGTCTTCTAGCC 59.181 38.462 0.00 0.00 0.00 3.93
269 279 7.761704 TCTGATGTTATTTCTGTGTCTTCTAGC 59.238 37.037 0.00 0.00 0.00 3.42
270 280 9.299963 CTCTGATGTTATTTCTGTGTCTTCTAG 57.700 37.037 0.00 0.00 0.00 2.43
271 281 9.025041 TCTCTGATGTTATTTCTGTGTCTTCTA 57.975 33.333 0.00 0.00 0.00 2.10
272 282 7.816995 GTCTCTGATGTTATTTCTGTGTCTTCT 59.183 37.037 0.00 0.00 0.00 2.85
273 283 7.600375 TGTCTCTGATGTTATTTCTGTGTCTTC 59.400 37.037 0.00 0.00 0.00 2.87
274 284 7.445121 TGTCTCTGATGTTATTTCTGTGTCTT 58.555 34.615 0.00 0.00 0.00 3.01
275 285 6.997655 TGTCTCTGATGTTATTTCTGTGTCT 58.002 36.000 0.00 0.00 0.00 3.41
276 286 7.171508 TGTTGTCTCTGATGTTATTTCTGTGTC 59.828 37.037 0.00 0.00 0.00 3.67
277 287 6.992123 TGTTGTCTCTGATGTTATTTCTGTGT 59.008 34.615 0.00 0.00 0.00 3.72
278 288 7.425577 TGTTGTCTCTGATGTTATTTCTGTG 57.574 36.000 0.00 0.00 0.00 3.66
279 289 7.879677 TGATGTTGTCTCTGATGTTATTTCTGT 59.120 33.333 0.00 0.00 0.00 3.41
280 290 8.260270 TGATGTTGTCTCTGATGTTATTTCTG 57.740 34.615 0.00 0.00 0.00 3.02
281 291 8.316946 TCTGATGTTGTCTCTGATGTTATTTCT 58.683 33.333 0.00 0.00 0.00 2.52
282 292 8.484641 TCTGATGTTGTCTCTGATGTTATTTC 57.515 34.615 0.00 0.00 0.00 2.17
283 293 7.551974 CCTCTGATGTTGTCTCTGATGTTATTT 59.448 37.037 0.00 0.00 0.00 1.40
284 294 7.046652 CCTCTGATGTTGTCTCTGATGTTATT 58.953 38.462 0.00 0.00 0.00 1.40
285 295 6.382282 TCCTCTGATGTTGTCTCTGATGTTAT 59.618 38.462 0.00 0.00 0.00 1.89
286 296 5.716703 TCCTCTGATGTTGTCTCTGATGTTA 59.283 40.000 0.00 0.00 0.00 2.41
287 297 4.529769 TCCTCTGATGTTGTCTCTGATGTT 59.470 41.667 0.00 0.00 0.00 2.71
288 298 4.092279 TCCTCTGATGTTGTCTCTGATGT 58.908 43.478 0.00 0.00 0.00 3.06
289 299 4.732672 TCCTCTGATGTTGTCTCTGATG 57.267 45.455 0.00 0.00 0.00 3.07
290 300 5.279255 CATCCTCTGATGTTGTCTCTGAT 57.721 43.478 0.00 0.00 42.87 2.90
291 301 4.732672 CATCCTCTGATGTTGTCTCTGA 57.267 45.455 0.00 0.00 42.87 3.27
327 337 7.872993 CCTCAGTGTTGTTTCTATGAGTTCTAA 59.127 37.037 0.00 0.00 33.86 2.10
334 344 3.327757 AGGCCTCAGTGTTGTTTCTATGA 59.672 43.478 0.00 0.00 0.00 2.15
337 347 2.703536 TCAGGCCTCAGTGTTGTTTCTA 59.296 45.455 0.00 0.00 0.00 2.10
348 358 1.093159 GAAGTGCATTCAGGCCTCAG 58.907 55.000 0.00 0.00 37.88 3.35
349 359 0.401356 TGAAGTGCATTCAGGCCTCA 59.599 50.000 0.00 0.00 43.09 3.86
350 360 3.254629 TGAAGTGCATTCAGGCCTC 57.745 52.632 0.00 0.00 43.09 4.70
382 393 4.764172 TCTAGCTCCATTTCTCTTTGCTC 58.236 43.478 0.00 0.00 0.00 4.26
399 410 6.483640 CACAACTGTAATAGGGGATTTCTAGC 59.516 42.308 0.00 0.00 0.00 3.42
401 412 6.674861 TCCACAACTGTAATAGGGGATTTCTA 59.325 38.462 0.00 0.00 0.00 2.10
413 424 5.045578 AGCATCCTAACTCCACAACTGTAAT 60.046 40.000 0.00 0.00 0.00 1.89
443 454 4.218312 AGTGCACCTTCTCCAAAGAATTT 58.782 39.130 14.63 0.00 40.68 1.82
444 455 3.837355 AGTGCACCTTCTCCAAAGAATT 58.163 40.909 14.63 0.00 40.68 2.17
456 467 1.293498 CACGGCTCTAGTGCACCTT 59.707 57.895 14.63 0.00 32.52 3.50
493 504 6.312672 CGGATGTACCAATTTCCAAATTTTCC 59.687 38.462 0.00 0.00 36.52 3.13
499 510 5.013547 ACATCGGATGTACCAATTTCCAAA 58.986 37.500 21.49 0.00 42.78 3.28
602 613 3.323403 AGAGGAGCTTGTACATATCCAGC 59.677 47.826 18.52 14.07 32.21 4.85
641 652 3.562393 CCTCTCAGGTGTTCACTCCTAGA 60.562 52.174 0.21 4.44 37.73 2.43
642 653 2.757868 CCTCTCAGGTGTTCACTCCTAG 59.242 54.545 0.21 0.00 37.73 3.02
643 654 2.808919 CCTCTCAGGTGTTCACTCCTA 58.191 52.381 0.21 0.00 37.73 2.94
665 676 6.650807 CAGTATTGTAAGCAAAGAGACTCCAA 59.349 38.462 0.00 0.00 38.21 3.53
683 694 6.640518 TCTCTACTAAACTTGGGCAGTATTG 58.359 40.000 0.00 0.00 32.94 1.90
686 697 5.720041 ACATCTCTACTAAACTTGGGCAGTA 59.280 40.000 0.00 0.00 32.94 2.74
739 750 9.573166 ACAAGCTTAATGCATCCACTAATATTA 57.427 29.630 0.00 0.00 45.94 0.98
751 762 6.720112 AATATGGACACAAGCTTAATGCAT 57.280 33.333 0.00 7.29 45.94 3.96
775 786 4.689549 ATGCCCTGCTGCTTGCCA 62.690 61.111 0.00 0.00 42.00 4.92
797 808 7.091902 ACTCCTAGAAGATCCTTGGACTAACTA 60.092 40.741 0.00 0.00 34.09 2.24
837 848 2.158842 GGCAACTCTGATACAGCTCCAT 60.159 50.000 0.00 0.00 0.00 3.41
840 851 2.680312 TGGCAACTCTGATACAGCTC 57.320 50.000 0.00 0.00 37.61 4.09
879 890 4.686191 AGAGATTCTAGGCATGGACAAG 57.314 45.455 0.00 0.00 0.00 3.16
897 908 6.478344 GCTTCCACAATCAGATAACTGTAGAG 59.522 42.308 0.00 0.00 43.81 2.43
973 984 9.828852 GATAGGACTTGAATACTACTACAATCG 57.171 37.037 0.00 0.00 0.00 3.34
1048 1129 2.738587 AGAGCTTCGAGATGGGTAGA 57.261 50.000 0.00 0.00 0.00 2.59
1051 1132 2.028130 CAGTAGAGCTTCGAGATGGGT 58.972 52.381 0.00 0.00 0.00 4.51
1069 1150 1.945394 GCCAGCACAGTTCCATATCAG 59.055 52.381 0.00 0.00 0.00 2.90
1071 1152 2.042686 TGCCAGCACAGTTCCATATC 57.957 50.000 0.00 0.00 0.00 1.63
1204 1286 4.646492 AGTGCATCTTTGAAGAACAAGGTT 59.354 37.500 0.00 0.00 39.77 3.50
1233 1315 2.203056 TCATTCGGCAGGGATGCG 60.203 61.111 0.00 0.00 35.24 4.73
1258 1340 8.144155 TGAAGATACGAGACAGAACTGTATAG 57.856 38.462 7.46 7.67 45.05 1.31
1270 1352 7.636359 GCAATGTGTAATTTGAAGATACGAGAC 59.364 37.037 0.00 0.00 0.00 3.36
1274 1356 5.971202 GGGCAATGTGTAATTTGAAGATACG 59.029 40.000 0.00 0.00 0.00 3.06
1292 1374 4.140536 GAGCTTCTTTATAGCAGGGCAAT 58.859 43.478 0.00 0.00 41.11 3.56
1326 1408 2.123769 TTGCCCAGTTGCTGCTGT 60.124 55.556 0.00 0.00 34.84 4.40
1343 1428 3.386486 TCTAGTCGTTTGCGTTTGATGT 58.614 40.909 0.00 0.00 39.49 3.06
1394 1485 5.759059 TCAATGTGGCAAAGATAGAAGGAT 58.241 37.500 0.00 0.00 0.00 3.24
1568 1675 2.747446 CGGTTTAAGTGCCATAACTGCT 59.253 45.455 0.00 0.00 0.00 4.24
1658 1777 3.021695 CTCCTGCATGATGGATTGTTGT 58.978 45.455 0.00 0.00 0.00 3.32
1709 1890 6.647334 TGTTTAGAGCAATCAAAATCCACA 57.353 33.333 0.00 0.00 0.00 4.17
1757 1939 4.424061 TCTCAACAAAGCCGATTGATTG 57.576 40.909 1.92 3.65 32.16 2.67
1778 1960 4.362677 TCTGAACTAGGTAGAGGGCAAAT 58.637 43.478 0.00 0.00 0.00 2.32
1783 1965 7.604657 ACAAATATCTGAACTAGGTAGAGGG 57.395 40.000 0.00 0.00 0.00 4.30
1873 2055 8.224389 AGCAGATAGATACATACATAGCTGAG 57.776 38.462 0.00 0.00 34.41 3.35
1875 2057 9.650539 AAAAGCAGATAGATACATACATAGCTG 57.349 33.333 0.00 0.00 35.34 4.24
1882 2064 7.589221 GCAAAGCAAAAGCAGATAGATACATAC 59.411 37.037 0.00 0.00 0.00 2.39
1897 2080 7.417612 TCTCAGTTAACTAAGCAAAGCAAAAG 58.582 34.615 8.04 0.00 0.00 2.27
1954 2138 4.037208 CACAGAGAAAGCCACAGTTGAAAT 59.963 41.667 0.00 0.00 0.00 2.17
1971 2156 6.485984 CCTATCATCCAAGAAAATCCACAGAG 59.514 42.308 0.00 0.00 0.00 3.35
2057 3718 0.583438 CTGCGACACAGTTCAGTTGG 59.417 55.000 0.00 0.00 41.86 3.77
2188 3900 3.451665 CTGGGCAGCAGCAAACTT 58.548 55.556 2.65 0.00 44.61 2.66
2295 5906 4.571176 GCATCTACTAAACCTGGCAAGTAC 59.429 45.833 0.00 0.00 0.00 2.73
2316 6833 2.640332 TCACATTACAAGTACCCCAGCA 59.360 45.455 0.00 0.00 0.00 4.41
2347 6866 6.932947 ACTAAAGTAACGAGGCTGAAACTAT 58.067 36.000 0.00 0.00 0.00 2.12
2379 6898 3.119137 GCAGGGTAGTTAAAAGCCATTGG 60.119 47.826 0.00 0.00 36.95 3.16
2395 6914 2.914097 GCCACAAGCAAGCAGGGT 60.914 61.111 0.00 0.00 42.97 4.34
2409 7038 8.784994 TCACTATATTTTTGTAAAACTTCGCCA 58.215 29.630 0.00 0.00 0.00 5.69
2410 7039 9.274065 CTCACTATATTTTTGTAAAACTTCGCC 57.726 33.333 0.00 0.00 0.00 5.54
2424 7053 4.389374 CATCCCGCACCTCACTATATTTT 58.611 43.478 0.00 0.00 0.00 1.82
2426 7055 2.303022 CCATCCCGCACCTCACTATATT 59.697 50.000 0.00 0.00 0.00 1.28
2494 7216 3.325870 TCGTCTGACGATGAAATTGCTT 58.674 40.909 27.26 0.00 46.73 3.91
2507 7229 1.325943 GCTGCTGCTTAATCGTCTGAC 59.674 52.381 8.53 0.00 36.03 3.51
2510 7232 1.649664 CTGCTGCTGCTTAATCGTCT 58.350 50.000 17.00 0.00 40.48 4.18
2512 7234 0.674581 TGCTGCTGCTGCTTAATCGT 60.675 50.000 27.67 0.00 40.48 3.73
2513 7235 0.027716 CTGCTGCTGCTGCTTAATCG 59.972 55.000 27.67 9.21 40.48 3.34
2514 7236 0.381089 CCTGCTGCTGCTGCTTAATC 59.619 55.000 27.67 3.30 40.48 1.75
2515 7237 0.323178 ACCTGCTGCTGCTGCTTAAT 60.323 50.000 27.67 11.43 40.48 1.40
2516 7238 1.073722 ACCTGCTGCTGCTGCTTAA 59.926 52.632 27.67 10.73 40.48 1.85
2517 7239 1.673337 CACCTGCTGCTGCTGCTTA 60.673 57.895 27.67 11.39 40.48 3.09
2519 7241 4.266543 ACACCTGCTGCTGCTGCT 62.267 61.111 27.67 9.19 40.48 4.24
2520 7242 3.735029 GACACCTGCTGCTGCTGC 61.735 66.667 22.51 22.51 40.48 5.25
2521 7243 2.281276 TGACACCTGCTGCTGCTG 60.281 61.111 17.00 15.58 40.48 4.41
2526 7248 1.301677 GCCTAACTGACACCTGCTGC 61.302 60.000 0.00 0.00 0.00 5.25
2528 7250 1.679898 GGCCTAACTGACACCTGCT 59.320 57.895 0.00 0.00 0.00 4.24
2529 7251 1.741770 CGGCCTAACTGACACCTGC 60.742 63.158 0.00 0.00 0.00 4.85
2532 7254 2.436115 GCCGGCCTAACTGACACC 60.436 66.667 18.11 0.00 0.00 4.16
2533 7255 0.676782 ATTGCCGGCCTAACTGACAC 60.677 55.000 26.77 0.00 0.00 3.67
2535 7257 0.451783 CAATTGCCGGCCTAACTGAC 59.548 55.000 26.77 0.00 0.00 3.51
2537 7259 0.887933 AACAATTGCCGGCCTAACTG 59.112 50.000 26.77 15.42 0.00 3.16
2539 7261 0.885196 TCAACAATTGCCGGCCTAAC 59.115 50.000 26.77 0.00 0.00 2.34
2543 7265 0.037419 ACATTCAACAATTGCCGGCC 60.037 50.000 26.77 6.44 0.00 6.13
2545 7267 2.721274 TCACATTCAACAATTGCCGG 57.279 45.000 5.05 0.00 0.00 6.13
2546 7268 2.924926 CCATCACATTCAACAATTGCCG 59.075 45.455 5.05 0.00 0.00 5.69
2547 7269 2.674357 GCCATCACATTCAACAATTGCC 59.326 45.455 5.05 0.00 0.00 4.52
2549 7271 3.055675 AGGGCCATCACATTCAACAATTG 60.056 43.478 6.18 3.24 0.00 2.32
2550 7272 3.055675 CAGGGCCATCACATTCAACAATT 60.056 43.478 6.18 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.