Multiple sequence alignment - TraesCS1B01G012400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G012400 chr1B 100.000 6443 0 0 1 6443 6059472 6065914 0.000000e+00 11899
1 TraesCS1B01G012400 chr1B 88.175 5184 549 29 991 6129 5694912 5700076 0.000000e+00 6119
2 TraesCS1B01G012400 chr1B 87.952 5088 520 36 156 5167 629651844 629656914 0.000000e+00 5914
3 TraesCS1B01G012400 chr1B 84.624 4533 628 38 989 5483 7256973 7252472 0.000000e+00 4446
4 TraesCS1B01G012400 chr1B 82.750 4429 638 66 990 5349 5851579 5855950 0.000000e+00 3831
5 TraesCS1B01G012400 chr1B 88.163 3092 317 29 963 4033 22154483 22151420 0.000000e+00 3637
6 TraesCS1B01G012400 chr1B 87.615 3157 352 23 931 4054 6281070 6284220 0.000000e+00 3627
7 TraesCS1B01G012400 chr1B 83.908 2784 386 34 989 3747 6194308 6197054 0.000000e+00 2603
8 TraesCS1B01G012400 chr1B 85.271 2288 307 19 3138 5398 5988142 5990426 0.000000e+00 2331
9 TraesCS1B01G012400 chr1B 85.359 2172 293 18 2626 4777 7338824 7340990 0.000000e+00 2226
10 TraesCS1B01G012400 chr1B 89.362 1692 170 7 963 2651 7337135 7338819 0.000000e+00 2119
11 TraesCS1B01G012400 chr1B 83.928 2159 329 11 2892 5034 22681443 22679287 0.000000e+00 2049
12 TraesCS1B01G012400 chr1B 87.173 1263 147 10 4753 6004 6284914 6286172 0.000000e+00 1421
13 TraesCS1B01G012400 chr1B 88.066 972 83 10 5164 6129 629661883 629662827 0.000000e+00 1122
14 TraesCS1B01G012400 chr1B 87.752 645 59 7 5494 6132 7698167 7697537 0.000000e+00 736
15 TraesCS1B01G012400 chr1B 89.806 412 39 3 5186 5597 7341332 7341740 5.720000e-145 525
16 TraesCS1B01G012400 chr1B 85.000 400 45 5 5750 6135 22666220 22665822 6.060000e-105 392
17 TraesCS1B01G012400 chr1B 85.000 300 37 6 5835 6129 7345149 7345445 1.360000e-76 298
18 TraesCS1B01G012400 chr1B 89.270 233 23 2 5898 6128 7252380 7252148 2.270000e-74 291
19 TraesCS1B01G012400 chr1B 92.466 146 6 1 1 146 629651614 629651754 3.050000e-48 204
20 TraesCS1B01G012400 chr1B 93.600 125 7 1 5625 5748 6483134 6483010 1.100000e-42 185
21 TraesCS1B01G012400 chr1B 91.406 128 10 1 5622 5748 5758750 5758877 2.390000e-39 174
22 TraesCS1B01G012400 chr1B 86.076 158 16 4 5983 6135 7049186 7049030 1.440000e-36 165
23 TraesCS1B01G012400 chr1B 89.583 96 9 1 5759 5854 7252477 7252383 3.160000e-23 121
24 TraesCS1B01G012400 chr1D 89.339 4127 392 26 1410 5499 77380 73265 0.000000e+00 5140
25 TraesCS1B01G012400 chr1D 84.595 4453 612 43 989 5398 5135222 5130801 0.000000e+00 4355
26 TraesCS1B01G012400 chr1D 90.989 2153 173 10 995 3132 3975131 3972985 0.000000e+00 2881
27 TraesCS1B01G012400 chr1D 84.517 2816 350 30 3150 5958 3972889 3970153 0.000000e+00 2706
28 TraesCS1B01G012400 chr1D 83.836 1095 155 18 4399 5483 4217849 4216767 0.000000e+00 1022
29 TraesCS1B01G012400 chr1D 93.182 308 18 2 6133 6438 4992612 4992306 3.540000e-122 449
30 TraesCS1B01G012400 chr1D 87.895 190 14 4 6250 6438 4762769 4762588 1.410000e-51 215
31 TraesCS1B01G012400 chr1D 88.618 123 13 1 6013 6135 4992773 4992652 1.450000e-31 148
32 TraesCS1B01G012400 chr1D 85.714 140 18 2 5954 6091 3321748 3321887 5.210000e-31 147
33 TraesCS1B01G012400 chr1D 94.203 69 3 1 5924 5991 4998889 4998821 3.180000e-18 104
34 TraesCS1B01G012400 chr1D 88.889 81 9 0 5983 6063 4216798 4216718 4.110000e-17 100
35 TraesCS1B01G012400 chr1A 84.916 4475 576 59 991 5398 6341263 6336821 0.000000e+00 4433
36 TraesCS1B01G012400 chr1A 85.671 3992 511 33 991 4949 5505991 5502028 0.000000e+00 4146
37 TraesCS1B01G012400 chr1A 82.893 2993 433 37 989 3934 4549911 4552871 0.000000e+00 2617
38 TraesCS1B01G012400 chr1A 84.825 1654 226 13 960 2602 6012565 6010926 0.000000e+00 1640
39 TraesCS1B01G012400 chr1A 83.883 1669 227 28 3767 5398 4500535 4502198 0.000000e+00 1554
40 TraesCS1B01G012400 chr1A 89.216 102 11 0 5750 5851 4502238 4502339 1.890000e-25 128
41 TraesCS1B01G012400 chr1A 89.216 102 11 0 5750 5851 5500339 5500238 1.890000e-25 128
42 TraesCS1B01G012400 chr1A 89.216 102 11 0 5750 5851 5501817 5501716 1.890000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G012400 chr1B 6059472 6065914 6442 False 11899.000000 11899 100.000000 1 6443 1 chr1B.!!$F5 6442
1 TraesCS1B01G012400 chr1B 5694912 5700076 5164 False 6119.000000 6119 88.175000 991 6129 1 chr1B.!!$F1 5138
2 TraesCS1B01G012400 chr1B 5851579 5855950 4371 False 3831.000000 3831 82.750000 990 5349 1 chr1B.!!$F3 4359
3 TraesCS1B01G012400 chr1B 22151420 22154483 3063 True 3637.000000 3637 88.163000 963 4033 1 chr1B.!!$R4 3070
4 TraesCS1B01G012400 chr1B 629651614 629656914 5300 False 3059.000000 5914 90.209000 1 5167 2 chr1B.!!$F10 5166
5 TraesCS1B01G012400 chr1B 6194308 6197054 2746 False 2603.000000 2603 83.908000 989 3747 1 chr1B.!!$F6 2758
6 TraesCS1B01G012400 chr1B 6281070 6286172 5102 False 2524.000000 3627 87.394000 931 6004 2 chr1B.!!$F8 5073
7 TraesCS1B01G012400 chr1B 5988142 5990426 2284 False 2331.000000 2331 85.271000 3138 5398 1 chr1B.!!$F4 2260
8 TraesCS1B01G012400 chr1B 22679287 22681443 2156 True 2049.000000 2049 83.928000 2892 5034 1 chr1B.!!$R6 2142
9 TraesCS1B01G012400 chr1B 7252148 7256973 4825 True 1619.333333 4446 87.825667 989 6128 3 chr1B.!!$R7 5139
10 TraesCS1B01G012400 chr1B 7337135 7345445 8310 False 1292.000000 2226 87.381750 963 6129 4 chr1B.!!$F9 5166
11 TraesCS1B01G012400 chr1B 629661883 629662827 944 False 1122.000000 1122 88.066000 5164 6129 1 chr1B.!!$F7 965
12 TraesCS1B01G012400 chr1B 7697537 7698167 630 True 736.000000 736 87.752000 5494 6132 1 chr1B.!!$R3 638
13 TraesCS1B01G012400 chr1D 73265 77380 4115 True 5140.000000 5140 89.339000 1410 5499 1 chr1D.!!$R1 4089
14 TraesCS1B01G012400 chr1D 5130801 5135222 4421 True 4355.000000 4355 84.595000 989 5398 1 chr1D.!!$R4 4409
15 TraesCS1B01G012400 chr1D 3970153 3975131 4978 True 2793.500000 2881 87.753000 995 5958 2 chr1D.!!$R5 4963
16 TraesCS1B01G012400 chr1D 4216718 4217849 1131 True 561.000000 1022 86.362500 4399 6063 2 chr1D.!!$R6 1664
17 TraesCS1B01G012400 chr1A 6336821 6341263 4442 True 4433.000000 4433 84.916000 991 5398 1 chr1A.!!$R2 4407
18 TraesCS1B01G012400 chr1A 4549911 4552871 2960 False 2617.000000 2617 82.893000 989 3934 1 chr1A.!!$F1 2945
19 TraesCS1B01G012400 chr1A 6010926 6012565 1639 True 1640.000000 1640 84.825000 960 2602 1 chr1A.!!$R1 1642
20 TraesCS1B01G012400 chr1A 5500238 5505991 5753 True 1467.333333 4146 88.034333 991 5851 3 chr1A.!!$R3 4860
21 TraesCS1B01G012400 chr1A 4500535 4502339 1804 False 841.000000 1554 86.549500 3767 5851 2 chr1A.!!$F2 2084

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.684805 ACGTCTCCTCCCACAGATCC 60.685 60.000 0.00 0.00 0.00 3.36 F
371 452 0.695347 GACCCCATCCATCCATCTCC 59.305 60.000 0.00 0.00 0.00 3.71 F
709 802 0.877743 GGTTTCTCAGGTGCAAGCTC 59.122 55.000 0.00 0.00 44.61 4.09 F
2185 2335 0.320421 TCTTACCAAGACCAGCGTGC 60.320 55.000 0.00 0.00 31.20 5.34 F
2733 2942 1.003759 CGAAGCTCATTGCAGCATCTC 60.004 52.381 0.00 4.17 45.94 2.75 F
3729 4024 0.031178 GCCCAAAGCTGACAGTGTTG 59.969 55.000 3.99 8.52 38.99 3.33 F
4063 4424 0.036952 AACATCAGAGGGTGAGTGCG 60.037 55.000 0.00 0.00 39.07 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 1971 1.676678 GATACCTCTGCCCGCTGACA 61.677 60.0 0.00 0.00 0.00 3.58 R
2168 2318 0.179043 TTGCACGCTGGTCTTGGTAA 60.179 50.0 0.00 0.00 0.00 2.85 R
2278 2428 0.956633 AAGCACTGCTTCATGTGTGG 59.043 50.0 10.67 0.00 46.77 4.17 R
3021 3233 0.529773 TCAGCGTCTGCAAGTTCGTT 60.530 50.0 2.45 0.00 46.23 3.85 R
4305 4667 0.030908 GAGGTGCTTCTCCGTATCCG 59.969 60.0 0.00 0.00 0.00 4.18 R
5049 5421 0.105964 TTACAGCAGGACAGCGTTGT 59.894 50.0 3.93 3.93 41.18 3.32 R
5816 8600 0.029300 GCGACTGCAGCAAAGTTCAA 59.971 50.0 15.27 0.00 42.15 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.684805 ACGTCTCCTCCCACAGATCC 60.685 60.000 0.00 0.00 0.00 3.36
41 42 1.344763 CAGATCCTATTCCCACCGACC 59.655 57.143 0.00 0.00 0.00 4.79
77 78 6.284459 AGATAACTACAGTTCCATTAGCAGC 58.716 40.000 0.00 0.00 39.31 5.25
78 79 4.559862 AACTACAGTTCCATTAGCAGCT 57.440 40.909 0.00 0.00 31.64 4.24
79 80 5.677319 AACTACAGTTCCATTAGCAGCTA 57.323 39.130 0.00 0.00 31.64 3.32
80 81 5.878406 ACTACAGTTCCATTAGCAGCTAT 57.122 39.130 2.02 0.00 0.00 2.97
81 82 6.978674 ACTACAGTTCCATTAGCAGCTATA 57.021 37.500 2.02 0.00 0.00 1.31
237 318 4.154195 CGGGAATGTTTTCAGGTCTAGTTG 59.846 45.833 0.00 0.00 33.23 3.16
254 335 2.738587 TTGGCAACCTGACAAACCTA 57.261 45.000 0.00 0.00 43.46 3.08
269 350 5.894653 ACAAACCTAGAAGGAGAGAGTACT 58.105 41.667 0.00 0.00 37.67 2.73
271 352 5.782677 AACCTAGAAGGAGAGAGTACTGA 57.217 43.478 0.00 0.00 37.67 3.41
280 361 7.773690 AGAAGGAGAGAGTACTGACTAGAAATC 59.226 40.741 0.00 0.00 35.45 2.17
366 447 1.538167 GCATGACCCCATCCATCCA 59.462 57.895 0.00 0.00 0.00 3.41
371 452 0.695347 GACCCCATCCATCCATCTCC 59.305 60.000 0.00 0.00 0.00 3.71
413 494 2.420058 ATCGAATTCCTTCCCCACAC 57.580 50.000 0.00 0.00 0.00 3.82
469 556 0.987294 AGAGCTTAGCTGCTTTCCCA 59.013 50.000 13.01 0.00 44.17 4.37
483 570 3.638627 GCTTTCCCAAATCCTATTCCCAG 59.361 47.826 0.00 0.00 0.00 4.45
518 605 1.339438 GCTGCTCCCAGAAATCTCACA 60.339 52.381 0.00 0.00 41.77 3.58
524 611 1.073763 CCCAGAAATCTCACACCCACA 59.926 52.381 0.00 0.00 0.00 4.17
530 617 3.475566 AATCTCACACCCACATATCCG 57.524 47.619 0.00 0.00 0.00 4.18
536 623 2.666190 CCCACATATCCGCGCTGG 60.666 66.667 5.56 9.07 40.09 4.85
537 624 3.349006 CCACATATCCGCGCTGGC 61.349 66.667 5.56 0.00 37.80 4.85
538 625 2.588596 CACATATCCGCGCTGGCA 60.589 61.111 5.56 0.46 39.92 4.92
551 638 1.522092 CTGGCATAGCTTCACCGGA 59.478 57.895 9.46 0.00 0.00 5.14
554 641 1.144936 GCATAGCTTCACCGGAGCT 59.855 57.895 19.00 19.00 42.12 4.09
555 642 0.878086 GCATAGCTTCACCGGAGCTC 60.878 60.000 18.62 4.71 39.79 4.09
641 734 4.749310 AGCCGCTCAGCTTCCACG 62.749 66.667 0.00 0.00 41.41 4.94
709 802 0.877743 GGTTTCTCAGGTGCAAGCTC 59.122 55.000 0.00 0.00 44.61 4.09
880 980 9.555727 TTCTCCCCTGTAGATTTATAAATTTCG 57.444 33.333 11.92 0.37 0.00 3.46
1719 1848 4.589216 AAAGCATTTTCAGTTGCAGCTA 57.411 36.364 1.52 0.00 41.35 3.32
1771 1900 5.690857 GTGAATTCGGTGGCTAAGAGTATAC 59.309 44.000 0.04 0.00 0.00 1.47
1776 1905 5.138276 TCGGTGGCTAAGAGTATACTTGAT 58.862 41.667 6.88 0.00 0.00 2.57
1836 1971 6.263168 CACCACTGGATAGACTTCAAAAACTT 59.737 38.462 0.71 0.00 0.00 2.66
1903 2044 3.108376 AGAGAGGTCCATAAGTGGGAAC 58.892 50.000 0.00 0.00 46.06 3.62
1905 2046 1.553704 GAGGTCCATAAGTGGGAACGT 59.446 52.381 0.00 0.00 47.00 3.99
2168 2318 4.605183 ACTGCACTAGGATCTGTACTTCT 58.395 43.478 0.00 0.00 0.00 2.85
2185 2335 0.320421 TCTTACCAAGACCAGCGTGC 60.320 55.000 0.00 0.00 31.20 5.34
2223 2373 9.868277 GCTATATCATCTAGAAGCAGTATTTGT 57.132 33.333 6.92 0.00 29.84 2.83
2227 2377 7.418337 TCATCTAGAAGCAGTATTTGTACCA 57.582 36.000 0.00 0.00 0.00 3.25
2278 2428 3.727970 GCTTAGCTACAACGATTTGCCAC 60.728 47.826 0.00 0.00 36.00 5.01
2388 2538 3.694072 CGAATGGCTTTATCCCAGAACAA 59.306 43.478 0.00 0.00 35.48 2.83
2570 2746 4.111255 TGGGAAAGGAATGTGTCATTGA 57.889 40.909 0.00 0.00 28.68 2.57
2583 2759 6.007936 TGTGTCATTGAAATTAAGGAACCG 57.992 37.500 0.00 0.00 0.00 4.44
2590 2766 6.554334 TTGAAATTAAGGAACCGAGTCAAG 57.446 37.500 0.00 0.00 0.00 3.02
2641 2847 3.126001 TGTCCTTGTCATGTGGAGAAC 57.874 47.619 0.00 0.00 0.00 3.01
2680 2889 6.590656 ATGTTATGGACAAAAGATCCCCTA 57.409 37.500 0.00 0.00 42.62 3.53
2691 2900 6.217693 ACAAAAGATCCCCTACTATCCAAACT 59.782 38.462 0.00 0.00 0.00 2.66
2733 2942 1.003759 CGAAGCTCATTGCAGCATCTC 60.004 52.381 0.00 4.17 45.94 2.75
2774 2986 1.627329 TGCCTTGAAGCTCTGTCTGAT 59.373 47.619 0.00 0.00 0.00 2.90
2836 3048 3.383185 CCTGAGGTACCTTGATCTCTCAC 59.617 52.174 17.53 0.00 0.00 3.51
3021 3233 4.164981 TGCCTCCAGAACTAGGAAAACTA 58.835 43.478 0.00 0.00 34.58 2.24
3024 3236 5.169295 CCTCCAGAACTAGGAAAACTAACG 58.831 45.833 0.00 0.00 34.58 3.18
3028 3240 6.041296 TCCAGAACTAGGAAAACTAACGAACT 59.959 38.462 0.00 0.00 30.71 3.01
3069 3284 1.741770 GGCAGCAGTTACTGGACCG 60.742 63.158 14.63 0.00 38.16 4.79
3124 3339 1.561643 CCTTGGTGGTCAGCTAGAGA 58.438 55.000 11.84 0.00 34.46 3.10
3132 3347 4.526262 GGTGGTCAGCTAGAGATATGTCAT 59.474 45.833 2.30 0.00 0.00 3.06
3135 3350 7.093552 GGTGGTCAGCTAGAGATATGTCATATT 60.094 40.741 6.79 0.00 0.00 1.28
3322 3617 4.341806 TGTTGCAAAACATGGTTGAGATCT 59.658 37.500 13.82 0.00 0.00 2.75
3382 3677 6.800408 CAGATGCAGTACAATCTTCACTTTTG 59.200 38.462 0.00 0.00 0.00 2.44
3408 3703 4.130286 ACTGAAGGTGCTTATGCTAGAC 57.870 45.455 0.00 0.00 40.48 2.59
3467 3762 3.471680 AGAGGCAAGAAGAACAGACAAC 58.528 45.455 0.00 0.00 0.00 3.32
3484 3779 2.624838 ACAACATTTCCTGTGCTTGAGG 59.375 45.455 0.00 0.00 38.39 3.86
3495 3790 5.012664 TCCTGTGCTTGAGGAGTTGTTTATA 59.987 40.000 0.00 0.00 34.49 0.98
3518 3813 3.573967 AGTAATTGTGGAAAGTTGGCAGG 59.426 43.478 0.00 0.00 0.00 4.85
3555 3850 3.357079 CTGCAAGGACCGTGTGGC 61.357 66.667 9.28 0.00 39.70 5.01
3646 3941 2.025605 AGCTTTCAGAGATGGGATGCAA 60.026 45.455 0.00 0.00 0.00 4.08
3664 3959 2.926838 GCAATCGAAGAGACTCAAGGAC 59.073 50.000 5.02 0.00 43.63 3.85
3725 4020 1.615392 GAAATGCCCAAAGCTGACAGT 59.385 47.619 3.99 0.00 44.23 3.55
3729 4024 0.031178 GCCCAAAGCTGACAGTGTTG 59.969 55.000 3.99 8.52 38.99 3.33
3756 4051 1.065126 GCACCATTGCTAGAAGGACCT 60.065 52.381 0.00 0.00 46.17 3.85
3760 4055 3.012518 CCATTGCTAGAAGGACCTTGTG 58.987 50.000 12.68 4.09 0.00 3.33
3776 4071 4.007659 CCTTGTGGTGAAGGTGGTTATAC 58.992 47.826 0.00 0.00 38.19 1.47
3782 4077 3.380320 GGTGAAGGTGGTTATACATTGGC 59.620 47.826 0.00 0.00 0.00 4.52
3829 4124 3.229552 GTGCTCGAAATGAAAGACTTGC 58.770 45.455 0.00 0.00 0.00 4.01
3853 4157 3.350833 AGTTTTCAGAGATGGGATGCAC 58.649 45.455 0.00 0.00 0.00 4.57
3930 4234 6.585702 CAGAGATGATAGATTTACCTGAAGCG 59.414 42.308 0.00 0.00 0.00 4.68
3955 4259 7.359181 CGCCAAAACTCACTTTATTGGAAATTC 60.359 37.037 7.01 0.00 42.46 2.17
3972 4276 3.863142 ATTCAAGATGGCAAGCAAGAC 57.137 42.857 0.00 0.00 0.00 3.01
4018 4322 3.407424 TGTCTTCACTGACCAATCTGG 57.593 47.619 0.00 0.00 45.02 3.86
4041 4345 2.564947 ACTGAACCTAGAAGGCACAGAG 59.435 50.000 19.63 3.12 41.24 3.35
4055 4416 2.934364 GCACAGAGACAACATCAGAGGG 60.934 54.545 0.00 0.00 0.00 4.30
4063 4424 0.036952 AACATCAGAGGGTGAGTGCG 60.037 55.000 0.00 0.00 39.07 5.34
4077 4438 1.130561 GAGTGCGCTTCAATTGTACCC 59.869 52.381 9.73 0.00 0.00 3.69
4078 4439 0.878416 GTGCGCTTCAATTGTACCCA 59.122 50.000 9.73 0.00 0.00 4.51
4119 4480 3.532542 GAACCAGAAATCCCCTCTTACG 58.467 50.000 0.00 0.00 0.00 3.18
4164 4525 4.273318 ACTTATTCTTTGGATCAGGTGCC 58.727 43.478 0.00 0.00 0.00 5.01
4204 4565 9.778741 ACTATTTTGTACATCTTGAAGAGTTGA 57.221 29.630 0.00 0.00 0.00 3.18
4210 4571 9.950680 TTGTACATCTTGAAGAGTTGAAAATTC 57.049 29.630 0.00 0.00 31.98 2.17
4214 4576 8.853126 ACATCTTGAAGAGTTGAAAATTCATGA 58.147 29.630 0.00 0.00 39.01 3.07
4260 4622 4.821805 CCAGAGAAAGTGTTCCAAAGCTTA 59.178 41.667 0.00 0.00 33.92 3.09
4290 4652 6.462768 CCTTGAGGAGATTGGAGATTAGTGAG 60.463 46.154 0.00 0.00 37.39 3.51
4305 4667 5.689383 TTAGTGAGTGCAAAAATCTGACC 57.311 39.130 0.00 0.00 0.00 4.02
4327 4689 2.957006 GGATACGGAGAAGCACCTCTTA 59.043 50.000 5.53 0.00 34.56 2.10
4335 4697 3.615155 AGAAGCACCTCTTAAGCCATTC 58.385 45.455 0.00 0.00 34.56 2.67
4436 4798 0.755686 GTCCCGGCATCTCTCAAGAT 59.244 55.000 0.00 0.00 43.24 2.40
4462 4824 5.192927 TGAATATTGAGTGGTGCCCTAAAG 58.807 41.667 0.00 0.00 0.00 1.85
4473 4835 3.421844 GTGCCCTAAAGTTGAGTCCATT 58.578 45.455 0.00 0.00 0.00 3.16
4476 4838 5.475564 GTGCCCTAAAGTTGAGTCCATTTTA 59.524 40.000 0.00 0.00 0.00 1.52
4539 4901 3.281727 TGTAGTGAGGAAATCATGCCC 57.718 47.619 0.00 0.00 40.92 5.36
4597 4962 3.582647 TCACTTCTGTCCATGCCTAGAAA 59.417 43.478 0.00 0.00 0.00 2.52
4620 4985 7.400599 AAATCTATGTTTGTCTGCATGTGAT 57.599 32.000 0.00 0.00 0.00 3.06
4623 4988 6.643388 TCTATGTTTGTCTGCATGTGATAGT 58.357 36.000 0.00 0.00 0.00 2.12
4629 4994 4.180817 TGTCTGCATGTGATAGTTTACCG 58.819 43.478 0.00 0.00 0.00 4.02
4682 5047 5.645497 AGACCTTAGAAATTGATGACTGCAC 59.355 40.000 0.00 0.00 0.00 4.57
4722 5087 3.970410 CAGCTGGGTGGGCTCCAA 61.970 66.667 5.57 0.00 38.03 3.53
4741 5106 4.080243 TCCAAAAACCAGAAGTCACTACCA 60.080 41.667 0.00 0.00 0.00 3.25
4751 5116 4.286032 AGAAGTCACTACCACCATAAGCAA 59.714 41.667 0.00 0.00 0.00 3.91
4778 5143 1.569030 ATCATGCCAGAGCCACCAGT 61.569 55.000 0.00 0.00 38.69 4.00
4846 5217 8.645814 TGAAACTCTAGAAATACTGGACTGTA 57.354 34.615 0.00 0.00 32.79 2.74
4851 5222 6.491383 TCTAGAAATACTGGACTGTACTGGT 58.509 40.000 4.66 0.00 31.27 4.00
5045 5417 4.529109 ACAGGTCTCTCTACTTTCTTGC 57.471 45.455 0.00 0.00 0.00 4.01
5049 5421 6.211584 ACAGGTCTCTCTACTTTCTTGCAATA 59.788 38.462 0.00 0.00 0.00 1.90
5050 5422 6.533367 CAGGTCTCTCTACTTTCTTGCAATAC 59.467 42.308 0.00 0.00 0.00 1.89
5065 5438 1.129251 CAATACAACGCTGTCCTGCTG 59.871 52.381 0.00 0.00 36.96 4.41
5313 7133 1.589320 TGTACGTGTTTGTTCTGACGC 59.411 47.619 0.00 0.00 35.21 5.19
5450 7288 2.290260 CCATGCAGGAGTAAACAGGTCA 60.290 50.000 0.00 0.00 41.22 4.02
5456 7294 3.741344 CAGGAGTAAACAGGTCAGAAACG 59.259 47.826 0.00 0.00 0.00 3.60
5515 7353 6.312918 ACAATGTACAAGATTATGTCGTGACC 59.687 38.462 0.00 0.00 38.42 4.02
5526 7364 1.271102 TGTCGTGACCGTGATCAATCA 59.729 47.619 0.00 0.00 35.01 2.57
5528 7366 1.544246 TCGTGACCGTGATCAATCAGT 59.456 47.619 0.00 0.00 37.51 3.41
5596 7434 2.778299 TCAAACGAATCTCCCCAGTTG 58.222 47.619 0.00 0.00 0.00 3.16
5612 7450 5.395768 CCCCAGTTGAGTAGAAGTTAGGATG 60.396 48.000 0.00 0.00 0.00 3.51
5741 8504 3.878778 ACTGTGGCTTTATCTGTGGATC 58.121 45.455 0.00 0.00 33.71 3.36
5777 8545 2.022195 CCTGATCCCTGATTGTTGCTG 58.978 52.381 0.00 0.00 0.00 4.41
5816 8600 3.019564 GGCCTGTGATTGCTTCTACAAT 58.980 45.455 0.00 0.00 42.88 2.71
5823 8607 7.275888 TGTGATTGCTTCTACAATTGAACTT 57.724 32.000 13.59 0.00 40.31 2.66
5827 8611 5.772825 TGCTTCTACAATTGAACTTTGCT 57.227 34.783 13.59 0.00 0.00 3.91
5861 10871 2.047179 GACAACTGTCGGGGCCTC 60.047 66.667 0.84 0.00 35.12 4.70
5888 10898 2.126071 GCGACTACTGCTTGGCGA 60.126 61.111 0.00 0.00 0.00 5.54
5889 10899 1.519455 GCGACTACTGCTTGGCGAT 60.519 57.895 0.00 0.00 0.00 4.58
5917 10927 2.883386 GGCATCTCTGAATCAACATCCC 59.117 50.000 0.00 0.00 0.00 3.85
5931 10941 2.502492 ATCCCAGGCCGAGACGATG 61.502 63.158 0.00 0.00 0.00 3.84
5990 11001 4.159693 GTGGAAAACAGGGAAGAAACAACT 59.840 41.667 0.00 0.00 0.00 3.16
5997 11008 7.898014 AACAGGGAAGAAACAACTTAGAAAT 57.102 32.000 0.00 0.00 0.00 2.17
5998 11009 7.898014 ACAGGGAAGAAACAACTTAGAAATT 57.102 32.000 0.00 0.00 0.00 1.82
6057 11068 9.853555 TTGTACCAATTTATGTCATGATTGTTC 57.146 29.630 16.31 10.15 0.00 3.18
6064 11075 9.850628 AATTTATGTCATGATTGTTCTCTGTTG 57.149 29.630 0.00 0.00 0.00 3.33
6075 11088 8.181573 TGATTGTTCTCTGTTGTGTTAAACTTC 58.818 33.333 0.00 0.00 0.00 3.01
6076 11089 7.441890 TTGTTCTCTGTTGTGTTAAACTTCA 57.558 32.000 0.00 0.00 0.00 3.02
6100 11116 8.567948 TCAACCTTTATCTTGTTCAAGATTCAC 58.432 33.333 26.00 0.00 39.92 3.18
6122 11138 5.581085 CACATACTTGCCAGGTTTAGTAGAC 59.419 44.000 0.00 0.00 0.00 2.59
6129 11145 1.822990 CAGGTTTAGTAGACGCTGGGA 59.177 52.381 0.00 0.00 0.00 4.37
6132 11148 4.281182 CAGGTTTAGTAGACGCTGGGATAT 59.719 45.833 0.00 0.00 0.00 1.63
6133 11149 4.900054 AGGTTTAGTAGACGCTGGGATATT 59.100 41.667 0.00 0.00 0.00 1.28
6134 11150 5.365895 AGGTTTAGTAGACGCTGGGATATTT 59.634 40.000 0.00 0.00 0.00 1.40
6135 11151 6.552350 AGGTTTAGTAGACGCTGGGATATTTA 59.448 38.462 0.00 0.00 0.00 1.40
6136 11152 6.867293 GGTTTAGTAGACGCTGGGATATTTAG 59.133 42.308 0.00 0.00 0.00 1.85
6137 11153 7.432059 GTTTAGTAGACGCTGGGATATTTAGT 58.568 38.462 0.00 0.00 0.00 2.24
6138 11154 7.592885 TTAGTAGACGCTGGGATATTTAGTT 57.407 36.000 0.00 0.00 0.00 2.24
6139 11155 6.086785 AGTAGACGCTGGGATATTTAGTTC 57.913 41.667 0.00 0.00 0.00 3.01
6140 11156 5.597182 AGTAGACGCTGGGATATTTAGTTCA 59.403 40.000 0.00 0.00 0.00 3.18
6141 11157 4.950050 AGACGCTGGGATATTTAGTTCAG 58.050 43.478 0.00 0.00 0.00 3.02
6142 11158 4.649674 AGACGCTGGGATATTTAGTTCAGA 59.350 41.667 0.00 0.00 0.00 3.27
6143 11159 5.128827 AGACGCTGGGATATTTAGTTCAGAA 59.871 40.000 0.00 0.00 0.00 3.02
6144 11160 5.360591 ACGCTGGGATATTTAGTTCAGAAG 58.639 41.667 0.00 0.00 0.00 2.85
6145 11161 5.128827 ACGCTGGGATATTTAGTTCAGAAGA 59.871 40.000 0.00 0.00 0.00 2.87
6146 11162 5.463724 CGCTGGGATATTTAGTTCAGAAGAC 59.536 44.000 0.00 0.00 0.00 3.01
6147 11163 6.349300 GCTGGGATATTTAGTTCAGAAGACA 58.651 40.000 0.00 0.00 0.00 3.41
6148 11164 6.823689 GCTGGGATATTTAGTTCAGAAGACAA 59.176 38.462 0.00 0.00 0.00 3.18
6149 11165 7.500559 GCTGGGATATTTAGTTCAGAAGACAAT 59.499 37.037 0.00 0.00 0.00 2.71
6150 11166 8.737168 TGGGATATTTAGTTCAGAAGACAATG 57.263 34.615 0.00 0.00 0.00 2.82
6151 11167 7.775093 TGGGATATTTAGTTCAGAAGACAATGG 59.225 37.037 0.00 0.00 0.00 3.16
6152 11168 7.255277 GGGATATTTAGTTCAGAAGACAATGGC 60.255 40.741 0.00 0.00 0.00 4.40
6153 11169 7.500559 GGATATTTAGTTCAGAAGACAATGGCT 59.499 37.037 0.00 0.00 0.00 4.75
6154 11170 8.814038 ATATTTAGTTCAGAAGACAATGGCTT 57.186 30.769 0.00 0.00 0.00 4.35
6155 11171 6.959639 TTTAGTTCAGAAGACAATGGCTTT 57.040 33.333 1.54 0.00 0.00 3.51
6156 11172 6.959639 TTAGTTCAGAAGACAATGGCTTTT 57.040 33.333 1.54 0.00 0.00 2.27
6157 11173 8.458573 TTTAGTTCAGAAGACAATGGCTTTTA 57.541 30.769 1.54 0.00 0.00 1.52
6158 11174 6.959639 AGTTCAGAAGACAATGGCTTTTAA 57.040 33.333 1.54 0.00 0.00 1.52
6159 11175 6.739112 AGTTCAGAAGACAATGGCTTTTAAC 58.261 36.000 1.54 8.13 0.00 2.01
6160 11176 6.547510 AGTTCAGAAGACAATGGCTTTTAACT 59.452 34.615 14.58 14.58 0.00 2.24
6161 11177 6.959639 TCAGAAGACAATGGCTTTTAACTT 57.040 33.333 1.54 0.00 0.00 2.66
6162 11178 6.738114 TCAGAAGACAATGGCTTTTAACTTG 58.262 36.000 1.54 0.00 0.00 3.16
6163 11179 6.321181 TCAGAAGACAATGGCTTTTAACTTGT 59.679 34.615 1.54 0.00 33.02 3.16
6164 11180 7.500892 TCAGAAGACAATGGCTTTTAACTTGTA 59.499 33.333 1.54 0.00 30.63 2.41
6165 11181 7.591426 CAGAAGACAATGGCTTTTAACTTGTAC 59.409 37.037 1.54 0.00 30.63 2.90
6166 11182 6.952773 AGACAATGGCTTTTAACTTGTACA 57.047 33.333 0.00 0.00 30.63 2.90
6167 11183 7.524717 AGACAATGGCTTTTAACTTGTACAT 57.475 32.000 0.00 0.00 30.63 2.29
6168 11184 8.630054 AGACAATGGCTTTTAACTTGTACATA 57.370 30.769 0.00 0.00 30.63 2.29
6169 11185 9.243105 AGACAATGGCTTTTAACTTGTACATAT 57.757 29.630 0.00 0.00 30.63 1.78
6170 11186 9.289303 GACAATGGCTTTTAACTTGTACATATG 57.711 33.333 0.00 0.00 30.63 1.78
6171 11187 8.250332 ACAATGGCTTTTAACTTGTACATATGG 58.750 33.333 7.80 0.00 0.00 2.74
6172 11188 7.954666 ATGGCTTTTAACTTGTACATATGGT 57.045 32.000 7.80 0.00 0.00 3.55
6173 11189 9.469097 AATGGCTTTTAACTTGTACATATGGTA 57.531 29.630 7.80 0.00 0.00 3.25
6190 11206 9.391006 ACATATGGTACTGGTGTTTAAACTATG 57.609 33.333 18.72 14.70 0.00 2.23
6191 11207 9.607988 CATATGGTACTGGTGTTTAAACTATGA 57.392 33.333 18.72 0.00 0.00 2.15
6194 11210 8.927675 TGGTACTGGTGTTTAAACTATGATTT 57.072 30.769 18.72 1.31 0.00 2.17
6195 11211 8.788806 TGGTACTGGTGTTTAAACTATGATTTG 58.211 33.333 18.72 4.61 0.00 2.32
6196 11212 8.789762 GGTACTGGTGTTTAAACTATGATTTGT 58.210 33.333 18.72 9.29 0.00 2.83
6207 11223 6.885735 AACTATGATTTGTTTATTTGCGCC 57.114 33.333 4.18 0.00 0.00 6.53
6208 11224 5.034152 ACTATGATTTGTTTATTTGCGCCG 58.966 37.500 4.18 0.00 0.00 6.46
6209 11225 2.600731 TGATTTGTTTATTTGCGCCGG 58.399 42.857 4.18 0.00 0.00 6.13
6210 11226 2.029828 TGATTTGTTTATTTGCGCCGGT 60.030 40.909 4.18 0.00 0.00 5.28
6211 11227 1.772182 TTTGTTTATTTGCGCCGGTG 58.228 45.000 11.67 11.67 0.00 4.94
6212 11228 0.664767 TTGTTTATTTGCGCCGGTGC 60.665 50.000 32.83 32.83 0.00 5.01
6213 11229 1.803922 GTTTATTTGCGCCGGTGCC 60.804 57.895 35.49 18.86 0.00 5.01
6214 11230 1.974343 TTTATTTGCGCCGGTGCCT 60.974 52.632 35.49 22.32 0.00 4.75
6215 11231 1.528292 TTTATTTGCGCCGGTGCCTT 61.528 50.000 35.49 22.12 0.00 4.35
6216 11232 1.528292 TTATTTGCGCCGGTGCCTTT 61.528 50.000 35.49 21.78 0.00 3.11
6217 11233 1.528292 TATTTGCGCCGGTGCCTTTT 61.528 50.000 35.49 20.04 0.00 2.27
6218 11234 2.763627 ATTTGCGCCGGTGCCTTTTC 62.764 55.000 35.49 9.36 0.00 2.29
6221 11237 3.737172 CGCCGGTGCCTTTTCCAG 61.737 66.667 0.00 0.00 0.00 3.86
6222 11238 2.282180 GCCGGTGCCTTTTCCAGA 60.282 61.111 1.90 0.00 0.00 3.86
6223 11239 1.678970 GCCGGTGCCTTTTCCAGAT 60.679 57.895 1.90 0.00 0.00 2.90
6224 11240 1.657751 GCCGGTGCCTTTTCCAGATC 61.658 60.000 1.90 0.00 0.00 2.75
6225 11241 0.322456 CCGGTGCCTTTTCCAGATCA 60.322 55.000 0.00 0.00 0.00 2.92
6226 11242 1.533625 CGGTGCCTTTTCCAGATCAA 58.466 50.000 0.00 0.00 0.00 2.57
6227 11243 1.470098 CGGTGCCTTTTCCAGATCAAG 59.530 52.381 0.00 0.00 0.00 3.02
6228 11244 2.519013 GGTGCCTTTTCCAGATCAAGT 58.481 47.619 0.00 0.00 0.00 3.16
6229 11245 3.686016 GGTGCCTTTTCCAGATCAAGTA 58.314 45.455 0.00 0.00 0.00 2.24
6230 11246 4.079253 GGTGCCTTTTCCAGATCAAGTAA 58.921 43.478 0.00 0.00 0.00 2.24
6231 11247 4.156739 GGTGCCTTTTCCAGATCAAGTAAG 59.843 45.833 0.00 0.00 0.00 2.34
6232 11248 5.003804 GTGCCTTTTCCAGATCAAGTAAGA 58.996 41.667 0.00 0.00 0.00 2.10
6233 11249 5.123027 GTGCCTTTTCCAGATCAAGTAAGAG 59.877 44.000 0.00 0.00 0.00 2.85
6234 11250 4.095632 GCCTTTTCCAGATCAAGTAAGAGC 59.904 45.833 0.00 0.00 0.00 4.09
6235 11251 5.495640 CCTTTTCCAGATCAAGTAAGAGCT 58.504 41.667 0.00 0.00 33.93 4.09
6240 11256 4.478206 CAGATCAAGTAAGAGCTGGGAA 57.522 45.455 0.00 0.00 45.64 3.97
6241 11257 4.836825 CAGATCAAGTAAGAGCTGGGAAA 58.163 43.478 0.00 0.00 45.64 3.13
6242 11258 4.874966 CAGATCAAGTAAGAGCTGGGAAAG 59.125 45.833 0.00 0.00 45.64 2.62
6243 11259 3.703001 TCAAGTAAGAGCTGGGAAAGG 57.297 47.619 0.00 0.00 0.00 3.11
6244 11260 2.305927 TCAAGTAAGAGCTGGGAAAGGG 59.694 50.000 0.00 0.00 0.00 3.95
6245 11261 2.040412 CAAGTAAGAGCTGGGAAAGGGT 59.960 50.000 0.00 0.00 0.00 4.34
6246 11262 1.630878 AGTAAGAGCTGGGAAAGGGTG 59.369 52.381 0.00 0.00 0.00 4.61
6247 11263 1.628846 GTAAGAGCTGGGAAAGGGTGA 59.371 52.381 0.00 0.00 0.00 4.02
6248 11264 0.695347 AAGAGCTGGGAAAGGGTGAG 59.305 55.000 0.00 0.00 0.00 3.51
6249 11265 1.204113 AGAGCTGGGAAAGGGTGAGG 61.204 60.000 0.00 0.00 0.00 3.86
6250 11266 1.464198 AGCTGGGAAAGGGTGAGGT 60.464 57.895 0.00 0.00 0.00 3.85
6251 11267 1.303643 GCTGGGAAAGGGTGAGGTG 60.304 63.158 0.00 0.00 0.00 4.00
6252 11268 1.380302 CTGGGAAAGGGTGAGGTGG 59.620 63.158 0.00 0.00 0.00 4.61
6253 11269 1.386772 TGGGAAAGGGTGAGGTGGT 60.387 57.895 0.00 0.00 0.00 4.16
6254 11270 1.074951 GGGAAAGGGTGAGGTGGTG 59.925 63.158 0.00 0.00 0.00 4.17
6255 11271 1.716028 GGGAAAGGGTGAGGTGGTGT 61.716 60.000 0.00 0.00 0.00 4.16
6256 11272 0.537371 GGAAAGGGTGAGGTGGTGTG 60.537 60.000 0.00 0.00 0.00 3.82
6257 11273 0.182775 GAAAGGGTGAGGTGGTGTGT 59.817 55.000 0.00 0.00 0.00 3.72
6258 11274 0.106719 AAAGGGTGAGGTGGTGTGTG 60.107 55.000 0.00 0.00 0.00 3.82
6259 11275 0.986019 AAGGGTGAGGTGGTGTGTGA 60.986 55.000 0.00 0.00 0.00 3.58
6260 11276 0.986019 AGGGTGAGGTGGTGTGTGAA 60.986 55.000 0.00 0.00 0.00 3.18
6261 11277 0.818040 GGGTGAGGTGGTGTGTGAAC 60.818 60.000 0.00 0.00 0.00 3.18
6262 11278 0.180406 GGTGAGGTGGTGTGTGAACT 59.820 55.000 0.00 0.00 0.00 3.01
6263 11279 1.408266 GGTGAGGTGGTGTGTGAACTT 60.408 52.381 0.00 0.00 0.00 2.66
6264 11280 2.365582 GTGAGGTGGTGTGTGAACTTT 58.634 47.619 0.00 0.00 0.00 2.66
6265 11281 2.354821 GTGAGGTGGTGTGTGAACTTTC 59.645 50.000 0.00 0.00 0.00 2.62
6266 11282 2.238646 TGAGGTGGTGTGTGAACTTTCT 59.761 45.455 0.00 0.00 0.00 2.52
6267 11283 2.614057 GAGGTGGTGTGTGAACTTTCTG 59.386 50.000 0.00 0.00 0.00 3.02
6268 11284 1.676006 GGTGGTGTGTGAACTTTCTGG 59.324 52.381 0.00 0.00 0.00 3.86
6269 11285 1.676006 GTGGTGTGTGAACTTTCTGGG 59.324 52.381 0.00 0.00 0.00 4.45
6270 11286 0.668535 GGTGTGTGAACTTTCTGGGC 59.331 55.000 0.00 0.00 0.00 5.36
6271 11287 0.668535 GTGTGTGAACTTTCTGGGCC 59.331 55.000 0.00 0.00 0.00 5.80
6272 11288 0.550914 TGTGTGAACTTTCTGGGCCT 59.449 50.000 4.53 0.00 0.00 5.19
6273 11289 0.954452 GTGTGAACTTTCTGGGCCTG 59.046 55.000 4.53 4.06 0.00 4.85
6274 11290 0.823356 TGTGAACTTTCTGGGCCTGC 60.823 55.000 4.53 0.00 0.00 4.85
6275 11291 0.538287 GTGAACTTTCTGGGCCTGCT 60.538 55.000 4.53 0.00 0.00 4.24
6276 11292 0.185901 TGAACTTTCTGGGCCTGCTT 59.814 50.000 4.53 0.00 0.00 3.91
6277 11293 0.600057 GAACTTTCTGGGCCTGCTTG 59.400 55.000 4.53 0.03 0.00 4.01
6278 11294 1.466851 AACTTTCTGGGCCTGCTTGC 61.467 55.000 4.53 0.00 0.00 4.01
6279 11295 1.605738 CTTTCTGGGCCTGCTTGCT 60.606 57.895 4.53 0.00 0.00 3.91
6280 11296 1.152483 TTTCTGGGCCTGCTTGCTT 60.152 52.632 4.53 0.00 0.00 3.91
6281 11297 1.466025 TTTCTGGGCCTGCTTGCTTG 61.466 55.000 4.53 0.00 0.00 4.01
6282 11298 2.282674 CTGGGCCTGCTTGCTTGA 60.283 61.111 4.53 0.00 0.00 3.02
6283 11299 2.598394 TGGGCCTGCTTGCTTGAC 60.598 61.111 4.53 0.00 0.00 3.18
6284 11300 2.598394 GGGCCTGCTTGCTTGACA 60.598 61.111 0.84 0.00 0.00 3.58
6285 11301 2.647297 GGCCTGCTTGCTTGACAC 59.353 61.111 0.00 0.00 0.00 3.67
6286 11302 2.253452 GCCTGCTTGCTTGACACG 59.747 61.111 0.00 0.00 0.00 4.49
6287 11303 2.253758 GCCTGCTTGCTTGACACGA 61.254 57.895 0.00 0.00 0.00 4.35
6288 11304 1.785041 GCCTGCTTGCTTGACACGAA 61.785 55.000 0.00 0.00 0.00 3.85
6289 11305 0.236711 CCTGCTTGCTTGACACGAAG 59.763 55.000 0.00 0.00 0.00 3.79
6291 11307 1.331756 CTGCTTGCTTGACACGAAGTT 59.668 47.619 0.00 0.00 41.61 2.66
6292 11308 1.742831 TGCTTGCTTGACACGAAGTTT 59.257 42.857 0.00 0.00 41.61 2.66
6293 11309 2.163412 TGCTTGCTTGACACGAAGTTTT 59.837 40.909 0.00 0.00 41.61 2.43
6294 11310 3.375610 TGCTTGCTTGACACGAAGTTTTA 59.624 39.130 0.00 0.00 41.61 1.52
6295 11311 3.724257 GCTTGCTTGACACGAAGTTTTAC 59.276 43.478 0.00 0.00 41.61 2.01
6296 11312 3.955771 TGCTTGACACGAAGTTTTACC 57.044 42.857 0.00 0.00 41.61 2.85
6297 11313 2.285756 TGCTTGACACGAAGTTTTACCG 59.714 45.455 0.00 0.00 41.61 4.02
6298 11314 2.540931 GCTTGACACGAAGTTTTACCGA 59.459 45.455 0.00 0.00 41.61 4.69
6299 11315 3.603173 GCTTGACACGAAGTTTTACCGAC 60.603 47.826 0.00 0.00 41.61 4.79
6300 11316 3.162202 TGACACGAAGTTTTACCGACA 57.838 42.857 0.00 0.00 41.61 4.35
6301 11317 3.719924 TGACACGAAGTTTTACCGACAT 58.280 40.909 0.00 0.00 41.61 3.06
6302 11318 4.869215 TGACACGAAGTTTTACCGACATA 58.131 39.130 0.00 0.00 41.61 2.29
6303 11319 5.472148 TGACACGAAGTTTTACCGACATAT 58.528 37.500 0.00 0.00 41.61 1.78
6304 11320 6.619744 TGACACGAAGTTTTACCGACATATA 58.380 36.000 0.00 0.00 41.61 0.86
6305 11321 6.748658 TGACACGAAGTTTTACCGACATATAG 59.251 38.462 0.00 0.00 41.61 1.31
6306 11322 6.624423 ACACGAAGTTTTACCGACATATAGT 58.376 36.000 0.00 0.00 41.61 2.12
6307 11323 6.529125 ACACGAAGTTTTACCGACATATAGTG 59.471 38.462 0.00 0.00 41.61 2.74
6308 11324 6.748658 CACGAAGTTTTACCGACATATAGTGA 59.251 38.462 0.00 0.00 41.61 3.41
6309 11325 6.971184 ACGAAGTTTTACCGACATATAGTGAG 59.029 38.462 0.00 0.00 37.78 3.51
6310 11326 6.417044 CGAAGTTTTACCGACATATAGTGAGG 59.583 42.308 0.00 0.00 36.02 3.86
6311 11327 6.786967 AGTTTTACCGACATATAGTGAGGT 57.213 37.500 0.00 0.00 42.08 3.85
6312 11328 6.570692 AGTTTTACCGACATATAGTGAGGTG 58.429 40.000 9.08 0.00 40.55 4.00
6313 11329 4.579454 TTACCGACATATAGTGAGGTGC 57.421 45.455 9.08 0.00 40.55 5.01
6314 11330 1.337071 ACCGACATATAGTGAGGTGCG 59.663 52.381 0.00 0.00 39.54 5.34
6315 11331 1.335964 CCGACATATAGTGAGGTGCGG 60.336 57.143 0.00 0.00 0.00 5.69
6316 11332 1.335964 CGACATATAGTGAGGTGCGGG 60.336 57.143 0.00 0.00 0.00 6.13
6317 11333 1.961394 GACATATAGTGAGGTGCGGGA 59.039 52.381 0.00 0.00 0.00 5.14
6318 11334 2.563179 GACATATAGTGAGGTGCGGGAT 59.437 50.000 0.00 0.00 0.00 3.85
6319 11335 2.300152 ACATATAGTGAGGTGCGGGATG 59.700 50.000 0.00 0.00 0.00 3.51
6320 11336 1.338107 TATAGTGAGGTGCGGGATGG 58.662 55.000 0.00 0.00 0.00 3.51
6321 11337 0.398522 ATAGTGAGGTGCGGGATGGA 60.399 55.000 0.00 0.00 0.00 3.41
6322 11338 0.398522 TAGTGAGGTGCGGGATGGAT 60.399 55.000 0.00 0.00 0.00 3.41
6323 11339 1.524621 GTGAGGTGCGGGATGGATG 60.525 63.158 0.00 0.00 0.00 3.51
6324 11340 1.995066 TGAGGTGCGGGATGGATGT 60.995 57.895 0.00 0.00 0.00 3.06
6325 11341 1.227674 GAGGTGCGGGATGGATGTC 60.228 63.158 0.00 0.00 0.00 3.06
6326 11342 1.971505 GAGGTGCGGGATGGATGTCA 61.972 60.000 0.00 0.00 0.00 3.58
6327 11343 1.149174 GGTGCGGGATGGATGTCAT 59.851 57.895 0.00 0.00 39.13 3.06
6338 11354 4.904895 ATGGATGTCATCATCTTCGGAT 57.095 40.909 14.72 0.00 46.74 4.18
6339 11355 4.694760 TGGATGTCATCATCTTCGGATT 57.305 40.909 14.72 0.00 46.74 3.01
6340 11356 5.806654 TGGATGTCATCATCTTCGGATTA 57.193 39.130 14.72 0.00 46.74 1.75
6341 11357 6.364568 TGGATGTCATCATCTTCGGATTAT 57.635 37.500 14.72 0.00 46.74 1.28
6342 11358 6.168389 TGGATGTCATCATCTTCGGATTATG 58.832 40.000 14.72 0.00 46.74 1.90
6343 11359 5.064452 GGATGTCATCATCTTCGGATTATGC 59.936 44.000 14.72 0.00 46.74 3.14
6344 11360 4.959723 TGTCATCATCTTCGGATTATGCA 58.040 39.130 0.00 0.00 36.52 3.96
6345 11361 4.992951 TGTCATCATCTTCGGATTATGCAG 59.007 41.667 0.00 0.00 36.52 4.41
6346 11362 5.221501 TGTCATCATCTTCGGATTATGCAGA 60.222 40.000 0.00 0.00 36.52 4.26
6347 11363 5.873712 GTCATCATCTTCGGATTATGCAGAT 59.126 40.000 0.00 0.00 36.52 2.90
6348 11364 7.038048 GTCATCATCTTCGGATTATGCAGATA 58.962 38.462 0.00 0.00 36.52 1.98
6349 11365 7.710044 GTCATCATCTTCGGATTATGCAGATAT 59.290 37.037 0.00 0.00 36.52 1.63
6350 11366 8.917088 TCATCATCTTCGGATTATGCAGATATA 58.083 33.333 0.00 0.00 36.52 0.86
6351 11367 9.538508 CATCATCTTCGGATTATGCAGATATAA 57.461 33.333 0.00 0.00 31.84 0.98
6352 11368 8.932945 TCATCTTCGGATTATGCAGATATAAC 57.067 34.615 0.00 0.00 31.35 1.89
6353 11369 8.531146 TCATCTTCGGATTATGCAGATATAACA 58.469 33.333 0.00 0.00 31.35 2.41
6354 11370 8.598924 CATCTTCGGATTATGCAGATATAACAC 58.401 37.037 0.00 0.00 31.35 3.32
6355 11371 7.896811 TCTTCGGATTATGCAGATATAACACT 58.103 34.615 0.00 0.00 0.00 3.55
6356 11372 9.020731 TCTTCGGATTATGCAGATATAACACTA 57.979 33.333 0.00 0.00 0.00 2.74
6357 11373 9.809096 CTTCGGATTATGCAGATATAACACTAT 57.191 33.333 0.00 0.00 0.00 2.12
6366 11382 8.465273 TGCAGATATAACACTATACAGACAGT 57.535 34.615 0.00 0.00 0.00 3.55
6367 11383 8.914011 TGCAGATATAACACTATACAGACAGTT 58.086 33.333 0.00 0.00 0.00 3.16
6374 11390 5.411781 ACACTATACAGACAGTTAAGCAGC 58.588 41.667 0.00 0.00 0.00 5.25
6375 11391 5.047306 ACACTATACAGACAGTTAAGCAGCA 60.047 40.000 0.00 0.00 0.00 4.41
6376 11392 6.045318 CACTATACAGACAGTTAAGCAGCAT 58.955 40.000 0.00 0.00 0.00 3.79
6377 11393 6.536582 CACTATACAGACAGTTAAGCAGCATT 59.463 38.462 0.00 0.00 0.00 3.56
6378 11394 7.065085 CACTATACAGACAGTTAAGCAGCATTT 59.935 37.037 0.00 0.00 0.00 2.32
6379 11395 6.824305 ATACAGACAGTTAAGCAGCATTTT 57.176 33.333 0.00 0.00 0.00 1.82
6380 11396 5.113502 ACAGACAGTTAAGCAGCATTTTC 57.886 39.130 0.00 0.00 0.00 2.29
6381 11397 4.580167 ACAGACAGTTAAGCAGCATTTTCA 59.420 37.500 0.00 0.00 0.00 2.69
6382 11398 5.242393 ACAGACAGTTAAGCAGCATTTTCAT 59.758 36.000 0.00 0.00 0.00 2.57
6383 11399 6.430925 ACAGACAGTTAAGCAGCATTTTCATA 59.569 34.615 0.00 0.00 0.00 2.15
6384 11400 6.965500 CAGACAGTTAAGCAGCATTTTCATAG 59.035 38.462 0.00 0.00 0.00 2.23
6385 11401 6.656693 AGACAGTTAAGCAGCATTTTCATAGT 59.343 34.615 0.00 0.00 0.00 2.12
6386 11402 6.846350 ACAGTTAAGCAGCATTTTCATAGTC 58.154 36.000 0.00 0.00 0.00 2.59
6387 11403 6.656693 ACAGTTAAGCAGCATTTTCATAGTCT 59.343 34.615 0.00 0.00 0.00 3.24
6388 11404 6.965500 CAGTTAAGCAGCATTTTCATAGTCTG 59.035 38.462 0.00 0.00 0.00 3.51
6389 11405 6.656693 AGTTAAGCAGCATTTTCATAGTCTGT 59.343 34.615 0.00 0.00 0.00 3.41
6390 11406 7.824289 AGTTAAGCAGCATTTTCATAGTCTGTA 59.176 33.333 0.00 0.00 0.00 2.74
6391 11407 8.616076 GTTAAGCAGCATTTTCATAGTCTGTAT 58.384 33.333 0.00 0.00 0.00 2.29
6392 11408 6.615264 AGCAGCATTTTCATAGTCTGTATG 57.385 37.500 0.00 0.00 0.00 2.39
6393 11409 6.351711 AGCAGCATTTTCATAGTCTGTATGA 58.648 36.000 0.00 0.00 32.63 2.15
6394 11410 6.482641 AGCAGCATTTTCATAGTCTGTATGAG 59.517 38.462 0.00 0.00 35.62 2.90
6395 11411 6.481313 GCAGCATTTTCATAGTCTGTATGAGA 59.519 38.462 0.00 0.00 35.62 3.27
6396 11412 7.307278 GCAGCATTTTCATAGTCTGTATGAGAG 60.307 40.741 0.00 0.00 35.62 3.20
6397 11413 7.171167 CAGCATTTTCATAGTCTGTATGAGAGG 59.829 40.741 0.00 0.00 35.62 3.69
6398 11414 6.073331 GCATTTTCATAGTCTGTATGAGAGGC 60.073 42.308 0.00 0.00 35.62 4.70
6399 11415 6.544928 TTTTCATAGTCTGTATGAGAGGCA 57.455 37.500 0.00 0.00 35.62 4.75
6400 11416 6.737720 TTTCATAGTCTGTATGAGAGGCAT 57.262 37.500 0.00 0.00 41.08 4.40
6401 11417 6.737720 TTCATAGTCTGTATGAGAGGCATT 57.262 37.500 0.00 0.00 38.44 3.56
6402 11418 6.737720 TCATAGTCTGTATGAGAGGCATTT 57.262 37.500 0.00 0.00 38.44 2.32
6403 11419 6.753180 TCATAGTCTGTATGAGAGGCATTTC 58.247 40.000 0.00 0.00 38.44 2.17
6404 11420 6.552725 TCATAGTCTGTATGAGAGGCATTTCT 59.447 38.462 0.00 0.00 38.44 2.52
6405 11421 5.275067 AGTCTGTATGAGAGGCATTTCTC 57.725 43.478 5.46 5.46 43.14 2.87
6406 11422 4.100808 AGTCTGTATGAGAGGCATTTCTCC 59.899 45.833 8.94 0.00 42.36 3.71
6407 11423 4.100808 GTCTGTATGAGAGGCATTTCTCCT 59.899 45.833 8.94 3.43 42.36 3.69
6414 11430 3.460857 GAGGCATTTCTCCTCGTATGT 57.539 47.619 0.00 0.00 40.51 2.29
6415 11431 4.585955 GAGGCATTTCTCCTCGTATGTA 57.414 45.455 0.00 0.00 40.51 2.29
6416 11432 4.945246 GAGGCATTTCTCCTCGTATGTAA 58.055 43.478 0.00 0.00 40.51 2.41
6417 11433 4.950050 AGGCATTTCTCCTCGTATGTAAG 58.050 43.478 0.00 0.00 0.00 2.34
6418 11434 4.406003 AGGCATTTCTCCTCGTATGTAAGT 59.594 41.667 0.00 0.00 0.00 2.24
6419 11435 4.508124 GGCATTTCTCCTCGTATGTAAGTG 59.492 45.833 0.00 0.00 0.00 3.16
6420 11436 5.348986 GCATTTCTCCTCGTATGTAAGTGA 58.651 41.667 0.00 0.00 0.00 3.41
6421 11437 5.986135 GCATTTCTCCTCGTATGTAAGTGAT 59.014 40.000 0.00 0.00 0.00 3.06
6422 11438 6.480320 GCATTTCTCCTCGTATGTAAGTGATT 59.520 38.462 0.00 0.00 0.00 2.57
6423 11439 7.652105 GCATTTCTCCTCGTATGTAAGTGATTA 59.348 37.037 0.00 0.00 0.00 1.75
6424 11440 9.529325 CATTTCTCCTCGTATGTAAGTGATTAA 57.471 33.333 0.00 0.00 0.00 1.40
6425 11441 9.751542 ATTTCTCCTCGTATGTAAGTGATTAAG 57.248 33.333 0.00 0.00 0.00 1.85
6426 11442 6.736123 TCTCCTCGTATGTAAGTGATTAAGC 58.264 40.000 0.00 0.00 0.00 3.09
6427 11443 6.320418 TCTCCTCGTATGTAAGTGATTAAGCA 59.680 38.462 0.00 0.00 0.00 3.91
6428 11444 6.504398 TCCTCGTATGTAAGTGATTAAGCAG 58.496 40.000 0.00 0.00 0.00 4.24
6429 11445 5.175856 CCTCGTATGTAAGTGATTAAGCAGC 59.824 44.000 0.00 0.00 0.00 5.25
6430 11446 5.656480 TCGTATGTAAGTGATTAAGCAGCA 58.344 37.500 0.00 0.00 0.00 4.41
6431 11447 5.748630 TCGTATGTAAGTGATTAAGCAGCAG 59.251 40.000 0.00 0.00 0.00 4.24
6432 11448 4.889832 ATGTAAGTGATTAAGCAGCAGC 57.110 40.909 0.00 0.00 42.56 5.25
6433 11449 3.673902 TGTAAGTGATTAAGCAGCAGCA 58.326 40.909 3.17 0.00 45.49 4.41
6434 11450 3.686241 TGTAAGTGATTAAGCAGCAGCAG 59.314 43.478 3.17 0.00 45.49 4.24
6435 11451 1.093159 AGTGATTAAGCAGCAGCAGC 58.907 50.000 3.17 0.46 45.49 5.25
6436 11452 0.806868 GTGATTAAGCAGCAGCAGCA 59.193 50.000 12.92 0.00 45.49 4.41
6437 11453 1.092348 TGATTAAGCAGCAGCAGCAG 58.908 50.000 12.92 0.00 45.49 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.268992 TGGGTGGTCGGTGGGAATAG 61.269 60.000 0.00 0.00 0.00 1.73
41 42 7.113658 ACTGTAGTTATCTTACAGATGGGTG 57.886 40.000 16.70 0.00 42.65 4.61
60 61 6.978674 AGTATAGCTGCTAATGGAACTGTA 57.021 37.500 14.13 0.00 0.00 2.74
63 64 7.604657 AACTAGTATAGCTGCTAATGGAACT 57.395 36.000 14.13 13.39 44.39 3.01
77 78 7.758528 AGTTCTTGGCGTGTTTAACTAGTATAG 59.241 37.037 0.00 0.00 46.50 1.31
78 79 7.605449 AGTTCTTGGCGTGTTTAACTAGTATA 58.395 34.615 0.00 0.00 0.00 1.47
79 80 6.461640 AGTTCTTGGCGTGTTTAACTAGTAT 58.538 36.000 0.00 0.00 0.00 2.12
80 81 5.846203 AGTTCTTGGCGTGTTTAACTAGTA 58.154 37.500 0.00 0.00 0.00 1.82
81 82 4.700700 AGTTCTTGGCGTGTTTAACTAGT 58.299 39.130 0.00 0.00 0.00 2.57
146 147 6.655078 AGCAATGACAGTTCCTTTTGTATT 57.345 33.333 0.00 0.00 0.00 1.89
147 148 7.759489 TTAGCAATGACAGTTCCTTTTGTAT 57.241 32.000 0.00 0.00 0.00 2.29
148 149 7.575414 TTTAGCAATGACAGTTCCTTTTGTA 57.425 32.000 0.00 0.00 0.00 2.41
150 151 7.951530 ATTTTAGCAATGACAGTTCCTTTTG 57.048 32.000 0.00 0.00 0.00 2.44
153 154 9.696917 CTTTTATTTTAGCAATGACAGTTCCTT 57.303 29.630 0.00 0.00 0.00 3.36
237 318 2.561478 TCTAGGTTTGTCAGGTTGCC 57.439 50.000 0.00 0.00 0.00 4.52
254 335 6.630203 TTCTAGTCAGTACTCTCTCCTTCT 57.370 41.667 0.00 0.00 37.15 2.85
280 361 9.565090 CAATCCTCCTCTCTCTATCTAGATATG 57.435 40.741 12.86 9.20 0.00 1.78
299 380 4.081476 AGCCAAATTTTAGTGCCAATCCTC 60.081 41.667 0.00 0.00 0.00 3.71
366 447 3.814504 TTGGCAAAGAGGAAAGGAGAT 57.185 42.857 0.00 0.00 0.00 2.75
413 494 0.034767 AGGGAGACATGCATGTGGTG 60.035 55.000 35.92 10.16 41.95 4.17
469 556 4.608170 TTGGAAGCTGGGAATAGGATTT 57.392 40.909 0.00 0.00 0.00 2.17
518 605 2.108976 CAGCGCGGATATGTGGGT 59.891 61.111 8.83 0.00 0.00 4.51
524 611 1.448540 GCTATGCCAGCGCGGATAT 60.449 57.895 20.06 14.86 41.37 1.63
536 623 0.878086 GAGCTCCGGTGAAGCTATGC 60.878 60.000 15.57 1.08 39.21 3.14
537 624 0.249657 GGAGCTCCGGTGAAGCTATG 60.250 60.000 19.06 0.00 39.21 2.23
538 625 1.403687 GGGAGCTCCGGTGAAGCTAT 61.404 60.000 26.36 0.00 39.21 2.97
568 655 3.248171 GCACCGACGACGAGATGC 61.248 66.667 9.28 11.56 42.66 3.91
570 657 4.175489 CGGCACCGACGACGAGAT 62.175 66.667 9.28 0.00 42.83 2.75
628 721 3.426568 GGCACGTGGAAGCTGAGC 61.427 66.667 18.88 0.00 0.00 4.26
658 751 1.230635 GCAGCAACAGCGAGGAAGAA 61.231 55.000 0.00 0.00 0.00 2.52
701 794 1.070134 AGTTACCTTCACGAGCTTGCA 59.930 47.619 0.00 0.00 0.00 4.08
709 802 4.041740 TGCAGCTATAGTTACCTTCACG 57.958 45.455 0.84 0.00 0.00 4.35
724 817 7.156673 ACAACTCAAAATCAAATATTGCAGCT 58.843 30.769 0.00 0.00 0.00 4.24
752 845 4.036734 GCTTGACATCTGTTCTTGAACCAA 59.963 41.667 10.51 5.95 0.00 3.67
758 851 3.811497 TGAGTGCTTGACATCTGTTCTTG 59.189 43.478 0.00 0.00 0.00 3.02
857 957 9.908747 TTTCGAAATTTATAAATCTACAGGGGA 57.091 29.630 11.08 0.00 0.00 4.81
870 970 9.894783 TGTTCCGTCAATTTTTCGAAATTTATA 57.105 25.926 12.12 0.00 30.51 0.98
880 980 6.820470 TGTGAAATGTTCCGTCAATTTTTC 57.180 33.333 0.00 0.00 0.00 2.29
890 990 6.007936 TGAACCTATTTGTGAAATGTTCCG 57.992 37.500 0.00 0.00 34.99 4.30
1719 1848 1.683917 GTATCAGAGACGCAGACCCAT 59.316 52.381 0.00 0.00 0.00 4.00
1771 1900 2.148446 TTCTTGGGGGATGCATCAAG 57.852 50.000 27.25 21.04 38.26 3.02
1776 1905 5.028802 TCATAATTTTTCTTGGGGGATGCA 58.971 37.500 0.00 0.00 0.00 3.96
1836 1971 1.676678 GATACCTCTGCCCGCTGACA 61.677 60.000 0.00 0.00 0.00 3.58
2154 2304 5.422650 GGTCTTGGTAAGAAGTACAGATCCT 59.577 44.000 0.00 0.00 39.67 3.24
2168 2318 0.179043 TTGCACGCTGGTCTTGGTAA 60.179 50.000 0.00 0.00 0.00 2.85
2185 2335 8.756927 TCTAGATGATATAGCCTTCCATTCTTG 58.243 37.037 0.00 0.00 0.00 3.02
2223 2373 4.039852 GGCAAAATTCCAGTTTCCTTGGTA 59.960 41.667 0.00 0.00 37.02 3.25
2227 2377 4.769345 TTGGCAAAATTCCAGTTTCCTT 57.231 36.364 0.00 0.00 34.66 3.36
2278 2428 0.956633 AAGCACTGCTTCATGTGTGG 59.043 50.000 10.67 0.00 46.77 4.17
2367 2517 4.949856 TCTTGTTCTGGGATAAAGCCATTC 59.050 41.667 0.00 0.00 0.00 2.67
2388 2538 5.782845 AGTGGTTTCAAGACTATCTTCCTCT 59.217 40.000 0.00 0.00 33.78 3.69
2433 2583 5.879223 CAGAAAGAATGACCTTGATGCTAGT 59.121 40.000 0.00 0.00 0.00 2.57
2570 2746 4.689345 CGACTTGACTCGGTTCCTTAATTT 59.311 41.667 0.00 0.00 0.00 1.82
2583 2759 2.062519 GAAAGCCACTCGACTTGACTC 58.937 52.381 0.00 0.00 0.00 3.36
2590 2766 1.134560 AGTATCCGAAAGCCACTCGAC 59.865 52.381 1.57 0.00 38.61 4.20
2641 2847 8.190784 GTCCATAACATTCAAAATACCTTCTGG 58.809 37.037 0.00 0.00 39.83 3.86
2660 2866 7.017254 GGATAGTAGGGGATCTTTTGTCCATAA 59.983 40.741 0.00 0.00 37.49 1.90
2680 2889 4.760530 TGCATAGCAGAGTTTGGATAGT 57.239 40.909 0.00 0.00 33.32 2.12
2691 2900 6.977213 TCGTACATAACTATTGCATAGCAGA 58.023 36.000 0.00 0.00 40.61 4.26
2712 2921 0.731417 GATGCTGCAATGAGCTTCGT 59.269 50.000 6.36 0.00 45.94 3.85
2733 2942 7.883217 AGGCATGCAAAGATCTATATTTTGAG 58.117 34.615 21.36 0.00 34.55 3.02
2774 2986 8.846943 TGCTTTGAGTAGAAATGATTCTGTTA 57.153 30.769 1.47 0.00 45.47 2.41
3021 3233 0.529773 TCAGCGTCTGCAAGTTCGTT 60.530 50.000 2.45 0.00 46.23 3.85
3024 3236 1.136141 CATGTCAGCGTCTGCAAGTTC 60.136 52.381 2.45 0.00 46.23 3.01
3028 3240 1.308047 AAACATGTCAGCGTCTGCAA 58.692 45.000 0.00 0.00 46.23 4.08
3124 3339 4.389992 CGCTTCCGCTTCAATATGACATAT 59.610 41.667 1.87 1.87 0.00 1.78
3132 3347 1.066430 ACTTCCGCTTCCGCTTCAATA 60.066 47.619 0.00 0.00 0.00 1.90
3135 3350 1.667830 CACTTCCGCTTCCGCTTCA 60.668 57.895 0.00 0.00 0.00 3.02
3156 3449 8.609617 TGAGATCCTTCTTCTTACCAAGATAA 57.390 34.615 0.00 0.00 37.38 1.75
3157 3450 8.609617 TTGAGATCCTTCTTCTTACCAAGATA 57.390 34.615 0.00 0.00 37.38 1.98
3341 3636 6.261381 ACTGCATCTGAACAAAAATTGCAATT 59.739 30.769 18.99 18.99 38.07 2.32
3382 3677 2.989166 GCATAAGCACCTTCAGTTTTGC 59.011 45.455 0.00 0.00 41.58 3.68
3467 3762 2.787994 ACTCCTCAAGCACAGGAAATG 58.212 47.619 0.50 0.00 39.69 2.32
3495 3790 4.039124 CCTGCCAACTTTCCACAATTACTT 59.961 41.667 0.00 0.00 0.00 2.24
3518 3813 3.314635 CAGCAATGGAGCTTCAGGTAATC 59.685 47.826 0.00 0.00 43.70 1.75
3531 3826 1.675310 CGGTCCTTGCAGCAATGGA 60.675 57.895 17.59 17.59 0.00 3.41
3555 3850 4.208460 CGTACCAATGTATAACCAGCTTCG 59.792 45.833 0.00 0.00 0.00 3.79
3560 3855 4.689071 TGAGCGTACCAATGTATAACCAG 58.311 43.478 0.00 0.00 0.00 4.00
3646 3941 3.574396 TGTTGTCCTTGAGTCTCTTCGAT 59.426 43.478 0.65 0.00 0.00 3.59
3756 4051 4.708576 TGTATAACCACCTTCACCACAA 57.291 40.909 0.00 0.00 0.00 3.33
3760 4055 3.380320 GCCAATGTATAACCACCTTCACC 59.620 47.826 0.00 0.00 0.00 4.02
3829 4124 3.626670 GCATCCCATCTCTGAAAACTCTG 59.373 47.826 0.00 0.00 0.00 3.35
3853 4157 3.003480 GAGGAAACAATGTCCCTTCGAG 58.997 50.000 8.36 0.00 35.59 4.04
3930 4234 7.440856 TGAATTTCCAATAAAGTGAGTTTTGGC 59.559 33.333 0.00 0.00 29.21 4.52
3955 4259 2.753452 AGATGTCTTGCTTGCCATCTTG 59.247 45.455 6.36 0.00 40.77 3.02
4018 4322 3.510360 TCTGTGCCTTCTAGGTTCAGTAC 59.490 47.826 14.10 0.00 38.41 2.73
4026 4330 2.300152 TGTTGTCTCTGTGCCTTCTAGG 59.700 50.000 0.00 0.00 38.80 3.02
4034 4338 2.344950 CCTCTGATGTTGTCTCTGTGC 58.655 52.381 0.00 0.00 0.00 4.57
4041 4345 2.693069 CACTCACCCTCTGATGTTGTC 58.307 52.381 0.00 0.00 0.00 3.18
4055 4416 2.412847 GGTACAATTGAAGCGCACTCAC 60.413 50.000 13.59 0.00 0.00 3.51
4063 4424 3.088532 TGTCCATGGGTACAATTGAAGC 58.911 45.455 13.59 1.38 0.00 3.86
4077 4438 2.426024 CCATTTCTCCTTGCTGTCCATG 59.574 50.000 0.00 0.00 0.00 3.66
4078 4439 2.309755 TCCATTTCTCCTTGCTGTCCAT 59.690 45.455 0.00 0.00 0.00 3.41
4119 4480 3.142174 GCAGCATCCTAACTCCATAACC 58.858 50.000 0.00 0.00 0.00 2.85
4164 4525 1.705873 AATAGTCCCACGGCTCTAGG 58.294 55.000 0.00 0.00 0.00 3.02
4204 4565 4.751060 AGCACATCGCATTCATGAATTTT 58.249 34.783 18.41 0.00 46.13 1.82
4210 4571 3.432759 CGAGCACATCGCATTCATG 57.567 52.632 0.00 0.00 45.98 3.07
4290 4652 3.485216 CGTATCCGGTCAGATTTTTGCAC 60.485 47.826 0.00 0.00 0.00 4.57
4305 4667 0.030908 GAGGTGCTTCTCCGTATCCG 59.969 60.000 0.00 0.00 0.00 4.18
4313 4675 2.770164 TGGCTTAAGAGGTGCTTCTC 57.230 50.000 6.67 0.00 38.05 2.87
4320 4682 2.565841 GATGCGAATGGCTTAAGAGGT 58.434 47.619 6.67 0.00 44.05 3.85
4327 4689 1.077787 TTCCGGATGCGAATGGCTT 60.078 52.632 8.71 0.00 44.05 4.35
4335 4697 1.084370 GTTGACTCCTTCCGGATGCG 61.084 60.000 4.15 0.00 39.01 4.73
4462 4824 3.255642 TGCTTGCCTAAAATGGACTCAAC 59.744 43.478 0.00 0.00 0.00 3.18
4473 4835 2.559698 TGTACTGCTGCTTGCCTAAA 57.440 45.000 0.00 0.00 42.00 1.85
4476 4838 0.037303 ACATGTACTGCTGCTTGCCT 59.963 50.000 0.00 0.00 42.00 4.75
4489 4851 4.466370 CCCTTGGACTAACTCAGACATGTA 59.534 45.833 0.00 0.00 0.00 2.29
4490 4852 3.261897 CCCTTGGACTAACTCAGACATGT 59.738 47.826 0.00 0.00 0.00 3.21
4539 4901 3.917988 TGACAACTCTGATACAGCTGTG 58.082 45.455 29.57 13.67 0.00 3.66
4597 4962 7.772292 ACTATCACATGCAGACAAACATAGATT 59.228 33.333 0.00 0.00 0.00 2.40
4620 4985 3.951775 TTTAGAACCGCCGGTAAACTA 57.048 42.857 10.30 11.23 33.12 2.24
4623 4988 3.615224 AGATTTAGAACCGCCGGTAAA 57.385 42.857 10.30 7.26 33.12 2.01
4629 4994 3.198872 CAGAGGAAGATTTAGAACCGCC 58.801 50.000 0.00 0.00 0.00 6.13
4682 5047 6.997655 TGGCATGATAGGACTTGAATACTAG 58.002 40.000 0.00 0.00 0.00 2.57
4722 5087 3.201266 TGGTGGTAGTGACTTCTGGTTTT 59.799 43.478 0.00 0.00 0.00 2.43
4741 5106 5.300286 GCATGATAGGACTTTTGCTTATGGT 59.700 40.000 0.00 0.00 0.00 3.55
4751 5116 2.158696 GGCTCTGGCATGATAGGACTTT 60.159 50.000 0.00 0.00 40.87 2.66
4795 5166 2.644676 GGGAGGAAGTAAATGCTCACC 58.355 52.381 0.00 0.00 39.33 4.02
4863 5234 2.210013 TGCAGGCAGACGGAGAGTT 61.210 57.895 0.00 0.00 0.00 3.01
5045 5417 1.129251 CAGCAGGACAGCGTTGTATTG 59.871 52.381 4.38 8.00 37.76 1.90
5049 5421 0.105964 TTACAGCAGGACAGCGTTGT 59.894 50.000 3.93 3.93 41.18 3.32
5050 5422 1.195448 CTTTACAGCAGGACAGCGTTG 59.805 52.381 0.00 0.00 40.15 4.10
5065 5438 3.389656 AGGCATCTAGGGAGCTTCTTTAC 59.610 47.826 0.00 0.00 0.00 2.01
5097 5470 1.143183 GATGCCAATGCTGCCCAAG 59.857 57.895 0.00 0.00 38.71 3.61
5098 5471 1.192803 TTGATGCCAATGCTGCCCAA 61.193 50.000 0.00 0.00 38.71 4.12
5313 7133 1.677576 ACTGCACATATCGCAAATGGG 59.322 47.619 0.00 0.00 39.30 4.00
5402 7240 2.360475 GGCGCTCCCTTGCTTCTT 60.360 61.111 7.64 0.00 0.00 2.52
5409 7247 2.439156 GATTGCTGGCGCTCCCTT 60.439 61.111 7.64 0.00 36.97 3.95
5450 7288 1.587054 CCCTCTCTGCGTCGTTTCT 59.413 57.895 0.00 0.00 0.00 2.52
5515 7353 4.614284 GCTCAACAAAACTGATTGATCACG 59.386 41.667 0.00 0.00 32.16 4.35
5526 7364 2.101415 GAGGCCAAAGCTCAACAAAACT 59.899 45.455 5.01 0.00 39.73 2.66
5528 7366 2.387757 AGAGGCCAAAGCTCAACAAAA 58.612 42.857 5.01 0.00 39.73 2.44
5596 7434 8.347035 GTGAGTATGTCATCCTAACTTCTACTC 58.653 40.741 0.00 0.00 37.56 2.59
5741 8504 4.565236 GGATCAGGCCTATCATCCAAGAAG 60.565 50.000 23.89 2.72 35.72 2.85
5777 8545 0.179034 CCATTCCCCTAGCAGAGCAC 60.179 60.000 0.00 0.00 0.00 4.40
5816 8600 0.029300 GCGACTGCAGCAAAGTTCAA 59.971 50.000 15.27 0.00 42.15 2.69
5823 8607 2.431430 CGAGAGCGACTGCAGCAA 60.431 61.111 15.27 0.00 46.23 3.91
5827 8611 4.103103 CGACCGAGAGCGACTGCA 62.103 66.667 0.00 0.00 46.23 4.41
5861 10871 2.803479 GTAGTCGCCCTACACCGG 59.197 66.667 0.00 0.00 44.65 5.28
5888 10898 1.210538 TTCAGAGATGCCAGGCTCAT 58.789 50.000 14.15 0.00 33.62 2.90
5889 10899 1.140452 GATTCAGAGATGCCAGGCTCA 59.860 52.381 14.15 0.00 33.62 4.26
5895 10905 3.548770 GGATGTTGATTCAGAGATGCCA 58.451 45.455 0.00 0.00 0.00 4.92
5896 10906 2.883386 GGGATGTTGATTCAGAGATGCC 59.117 50.000 0.00 0.00 0.00 4.40
5917 10927 0.596083 GATGACATCGTCTCGGCCTG 60.596 60.000 0.00 0.00 33.15 4.85
5931 10941 3.427233 GCAGCAAACCAGATCAAGATGAC 60.427 47.826 0.00 0.00 0.00 3.06
5968 10978 4.349365 AGTTGTTTCTTCCCTGTTTTCCA 58.651 39.130 0.00 0.00 0.00 3.53
5997 11008 9.717942 AGCAAAATAAAATTAACTACCATGCAA 57.282 25.926 0.00 0.00 0.00 4.08
5998 11009 9.717942 AAGCAAAATAAAATTAACTACCATGCA 57.282 25.926 0.00 0.00 0.00 3.96
6057 11068 6.436843 AGGTTGAAGTTTAACACAACAGAG 57.563 37.500 25.61 0.00 42.61 3.35
6064 11075 9.797556 AACAAGATAAAGGTTGAAGTTTAACAC 57.202 29.630 12.08 2.69 0.00 3.32
6100 11116 4.804139 CGTCTACTAAACCTGGCAAGTATG 59.196 45.833 0.00 0.00 0.00 2.39
6122 11138 5.463724 GTCTTCTGAACTAAATATCCCAGCG 59.536 44.000 0.00 0.00 0.00 5.18
6129 11145 8.814038 AAGCCATTGTCTTCTGAACTAAATAT 57.186 30.769 0.00 0.00 0.00 1.28
6132 11148 6.959639 AAAGCCATTGTCTTCTGAACTAAA 57.040 33.333 0.00 0.00 0.00 1.85
6133 11149 6.959639 AAAAGCCATTGTCTTCTGAACTAA 57.040 33.333 0.00 0.00 0.00 2.24
6134 11150 7.719633 AGTTAAAAGCCATTGTCTTCTGAACTA 59.280 33.333 1.86 0.00 0.00 2.24
6135 11151 6.547510 AGTTAAAAGCCATTGTCTTCTGAACT 59.452 34.615 0.00 0.00 0.00 3.01
6136 11152 6.739112 AGTTAAAAGCCATTGTCTTCTGAAC 58.261 36.000 0.00 0.00 0.00 3.18
6137 11153 6.959639 AGTTAAAAGCCATTGTCTTCTGAA 57.040 33.333 0.00 0.00 0.00 3.02
6138 11154 6.321181 ACAAGTTAAAAGCCATTGTCTTCTGA 59.679 34.615 0.00 0.00 28.22 3.27
6139 11155 6.507023 ACAAGTTAAAAGCCATTGTCTTCTG 58.493 36.000 0.00 0.00 28.22 3.02
6140 11156 6.715347 ACAAGTTAAAAGCCATTGTCTTCT 57.285 33.333 0.00 0.00 28.22 2.85
6141 11157 7.422399 TGTACAAGTTAAAAGCCATTGTCTTC 58.578 34.615 0.00 0.00 35.77 2.87
6142 11158 7.341445 TGTACAAGTTAAAAGCCATTGTCTT 57.659 32.000 0.00 0.00 35.77 3.01
6143 11159 6.952773 TGTACAAGTTAAAAGCCATTGTCT 57.047 33.333 0.00 0.00 35.77 3.41
6144 11160 9.289303 CATATGTACAAGTTAAAAGCCATTGTC 57.711 33.333 0.00 0.00 35.77 3.18
6145 11161 8.250332 CCATATGTACAAGTTAAAAGCCATTGT 58.750 33.333 0.00 0.00 37.77 2.71
6146 11162 8.250332 ACCATATGTACAAGTTAAAAGCCATTG 58.750 33.333 0.00 0.00 0.00 2.82
6147 11163 8.361169 ACCATATGTACAAGTTAAAAGCCATT 57.639 30.769 0.00 0.00 0.00 3.16
6148 11164 7.954666 ACCATATGTACAAGTTAAAAGCCAT 57.045 32.000 0.00 0.00 0.00 4.40
6164 11180 9.391006 CATAGTTTAAACACCAGTACCATATGT 57.609 33.333 20.06 0.00 0.00 2.29
6165 11181 9.607988 TCATAGTTTAAACACCAGTACCATATG 57.392 33.333 20.06 13.57 0.00 1.78
6168 11184 9.528489 AAATCATAGTTTAAACACCAGTACCAT 57.472 29.630 20.06 0.00 0.00 3.55
6169 11185 8.788806 CAAATCATAGTTTAAACACCAGTACCA 58.211 33.333 20.06 0.00 0.00 3.25
6170 11186 8.789762 ACAAATCATAGTTTAAACACCAGTACC 58.210 33.333 20.06 0.00 0.00 3.34
6181 11197 8.865001 GGCGCAAATAAACAAATCATAGTTTAA 58.135 29.630 10.83 0.00 41.76 1.52
6182 11198 7.219154 CGGCGCAAATAAACAAATCATAGTTTA 59.781 33.333 10.83 0.00 42.39 2.01
6183 11199 6.034470 CGGCGCAAATAAACAAATCATAGTTT 59.966 34.615 10.83 0.00 40.68 2.66
6184 11200 5.514914 CGGCGCAAATAAACAAATCATAGTT 59.485 36.000 10.83 0.00 0.00 2.24
6185 11201 5.034152 CGGCGCAAATAAACAAATCATAGT 58.966 37.500 10.83 0.00 0.00 2.12
6186 11202 4.440758 CCGGCGCAAATAAACAAATCATAG 59.559 41.667 10.83 0.00 0.00 2.23
6187 11203 4.142359 ACCGGCGCAAATAAACAAATCATA 60.142 37.500 10.83 0.00 0.00 2.15
6188 11204 3.186119 CCGGCGCAAATAAACAAATCAT 58.814 40.909 10.83 0.00 0.00 2.45
6189 11205 2.029828 ACCGGCGCAAATAAACAAATCA 60.030 40.909 10.83 0.00 0.00 2.57
6190 11206 2.344142 CACCGGCGCAAATAAACAAATC 59.656 45.455 10.83 0.00 0.00 2.17
6191 11207 2.333014 CACCGGCGCAAATAAACAAAT 58.667 42.857 10.83 0.00 0.00 2.32
6192 11208 1.772182 CACCGGCGCAAATAAACAAA 58.228 45.000 10.83 0.00 0.00 2.83
6193 11209 0.664767 GCACCGGCGCAAATAAACAA 60.665 50.000 10.19 0.00 0.00 2.83
6194 11210 1.081108 GCACCGGCGCAAATAAACA 60.081 52.632 10.19 0.00 0.00 2.83
6195 11211 1.803922 GGCACCGGCGCAAATAAAC 60.804 57.895 17.66 0.00 42.47 2.01
6196 11212 1.528292 AAGGCACCGGCGCAAATAAA 61.528 50.000 17.66 0.00 42.47 1.40
6197 11213 1.528292 AAAGGCACCGGCGCAAATAA 61.528 50.000 17.66 0.00 42.47 1.40
6198 11214 1.528292 AAAAGGCACCGGCGCAAATA 61.528 50.000 17.66 0.00 42.47 1.40
6199 11215 2.763627 GAAAAGGCACCGGCGCAAAT 62.764 55.000 17.66 0.00 42.47 2.32
6200 11216 3.492311 GAAAAGGCACCGGCGCAAA 62.492 57.895 17.66 0.00 42.47 3.68
6201 11217 3.972276 GAAAAGGCACCGGCGCAA 61.972 61.111 17.66 0.00 42.47 4.85
6204 11220 3.737172 CTGGAAAAGGCACCGGCG 61.737 66.667 0.00 0.00 42.47 6.46
6205 11221 1.657751 GATCTGGAAAAGGCACCGGC 61.658 60.000 0.00 0.00 40.13 6.13
6206 11222 0.322456 TGATCTGGAAAAGGCACCGG 60.322 55.000 0.00 0.00 0.00 5.28
6207 11223 1.470098 CTTGATCTGGAAAAGGCACCG 59.530 52.381 0.00 0.00 0.00 4.94
6208 11224 2.519013 ACTTGATCTGGAAAAGGCACC 58.481 47.619 0.00 0.00 0.00 5.01
6209 11225 5.003804 TCTTACTTGATCTGGAAAAGGCAC 58.996 41.667 0.00 0.00 0.00 5.01
6210 11226 5.241403 TCTTACTTGATCTGGAAAAGGCA 57.759 39.130 0.00 0.00 0.00 4.75
6211 11227 4.095632 GCTCTTACTTGATCTGGAAAAGGC 59.904 45.833 0.00 0.00 0.00 4.35
6212 11228 5.353678 CAGCTCTTACTTGATCTGGAAAAGG 59.646 44.000 0.00 0.00 0.00 3.11
6213 11229 6.419980 CAGCTCTTACTTGATCTGGAAAAG 57.580 41.667 0.00 0.00 0.00 2.27
6218 11234 2.768527 TCCCAGCTCTTACTTGATCTGG 59.231 50.000 7.25 7.25 45.11 3.86
6219 11235 4.478206 TTCCCAGCTCTTACTTGATCTG 57.522 45.455 0.00 0.00 32.02 2.90
6220 11236 4.080638 CCTTTCCCAGCTCTTACTTGATCT 60.081 45.833 0.00 0.00 0.00 2.75
6221 11237 4.195416 CCTTTCCCAGCTCTTACTTGATC 58.805 47.826 0.00 0.00 0.00 2.92
6222 11238 3.054065 CCCTTTCCCAGCTCTTACTTGAT 60.054 47.826 0.00 0.00 0.00 2.57
6223 11239 2.305927 CCCTTTCCCAGCTCTTACTTGA 59.694 50.000 0.00 0.00 0.00 3.02
6224 11240 2.040412 ACCCTTTCCCAGCTCTTACTTG 59.960 50.000 0.00 0.00 0.00 3.16
6225 11241 2.040412 CACCCTTTCCCAGCTCTTACTT 59.960 50.000 0.00 0.00 0.00 2.24
6226 11242 1.630878 CACCCTTTCCCAGCTCTTACT 59.369 52.381 0.00 0.00 0.00 2.24
6227 11243 1.628846 TCACCCTTTCCCAGCTCTTAC 59.371 52.381 0.00 0.00 0.00 2.34
6228 11244 1.909302 CTCACCCTTTCCCAGCTCTTA 59.091 52.381 0.00 0.00 0.00 2.10
6229 11245 0.695347 CTCACCCTTTCCCAGCTCTT 59.305 55.000 0.00 0.00 0.00 2.85
6230 11246 1.204113 CCTCACCCTTTCCCAGCTCT 61.204 60.000 0.00 0.00 0.00 4.09
6231 11247 1.301293 CCTCACCCTTTCCCAGCTC 59.699 63.158 0.00 0.00 0.00 4.09
6232 11248 1.464198 ACCTCACCCTTTCCCAGCT 60.464 57.895 0.00 0.00 0.00 4.24
6233 11249 1.303643 CACCTCACCCTTTCCCAGC 60.304 63.158 0.00 0.00 0.00 4.85
6234 11250 1.380302 CCACCTCACCCTTTCCCAG 59.620 63.158 0.00 0.00 0.00 4.45
6235 11251 1.386772 ACCACCTCACCCTTTCCCA 60.387 57.895 0.00 0.00 0.00 4.37
6236 11252 1.074951 CACCACCTCACCCTTTCCC 59.925 63.158 0.00 0.00 0.00 3.97
6237 11253 0.537371 CACACCACCTCACCCTTTCC 60.537 60.000 0.00 0.00 0.00 3.13
6238 11254 0.182775 ACACACCACCTCACCCTTTC 59.817 55.000 0.00 0.00 0.00 2.62
6239 11255 0.106719 CACACACCACCTCACCCTTT 60.107 55.000 0.00 0.00 0.00 3.11
6240 11256 0.986019 TCACACACCACCTCACCCTT 60.986 55.000 0.00 0.00 0.00 3.95
6241 11257 0.986019 TTCACACACCACCTCACCCT 60.986 55.000 0.00 0.00 0.00 4.34
6242 11258 0.818040 GTTCACACACCACCTCACCC 60.818 60.000 0.00 0.00 0.00 4.61
6243 11259 0.180406 AGTTCACACACCACCTCACC 59.820 55.000 0.00 0.00 0.00 4.02
6244 11260 2.038387 AAGTTCACACACCACCTCAC 57.962 50.000 0.00 0.00 0.00 3.51
6245 11261 2.238646 AGAAAGTTCACACACCACCTCA 59.761 45.455 0.00 0.00 0.00 3.86
6246 11262 2.614057 CAGAAAGTTCACACACCACCTC 59.386 50.000 0.00 0.00 0.00 3.85
6247 11263 2.643551 CAGAAAGTTCACACACCACCT 58.356 47.619 0.00 0.00 0.00 4.00
6248 11264 1.676006 CCAGAAAGTTCACACACCACC 59.324 52.381 0.00 0.00 0.00 4.61
6249 11265 1.676006 CCCAGAAAGTTCACACACCAC 59.324 52.381 0.00 0.00 0.00 4.16
6250 11266 2.021723 GCCCAGAAAGTTCACACACCA 61.022 52.381 0.00 0.00 0.00 4.17
6251 11267 0.668535 GCCCAGAAAGTTCACACACC 59.331 55.000 0.00 0.00 0.00 4.16
6252 11268 0.668535 GGCCCAGAAAGTTCACACAC 59.331 55.000 0.00 0.00 0.00 3.82
6253 11269 0.550914 AGGCCCAGAAAGTTCACACA 59.449 50.000 0.00 0.00 0.00 3.72
6254 11270 0.954452 CAGGCCCAGAAAGTTCACAC 59.046 55.000 0.00 0.00 0.00 3.82
6255 11271 0.823356 GCAGGCCCAGAAAGTTCACA 60.823 55.000 0.00 0.00 0.00 3.58
6256 11272 0.538287 AGCAGGCCCAGAAAGTTCAC 60.538 55.000 0.00 0.00 0.00 3.18
6257 11273 0.185901 AAGCAGGCCCAGAAAGTTCA 59.814 50.000 0.00 0.00 0.00 3.18
6258 11274 0.600057 CAAGCAGGCCCAGAAAGTTC 59.400 55.000 0.00 0.00 0.00 3.01
6259 11275 1.466851 GCAAGCAGGCCCAGAAAGTT 61.467 55.000 0.00 0.00 0.00 2.66
6260 11276 1.905354 GCAAGCAGGCCCAGAAAGT 60.905 57.895 0.00 0.00 0.00 2.66
6261 11277 1.183676 AAGCAAGCAGGCCCAGAAAG 61.184 55.000 0.00 0.00 0.00 2.62
6262 11278 1.152483 AAGCAAGCAGGCCCAGAAA 60.152 52.632 0.00 0.00 0.00 2.52
6263 11279 1.904865 CAAGCAAGCAGGCCCAGAA 60.905 57.895 0.00 0.00 0.00 3.02
6264 11280 2.282674 CAAGCAAGCAGGCCCAGA 60.283 61.111 0.00 0.00 0.00 3.86
6265 11281 2.282674 TCAAGCAAGCAGGCCCAG 60.283 61.111 0.00 0.00 0.00 4.45
6266 11282 2.598394 GTCAAGCAAGCAGGCCCA 60.598 61.111 0.00 0.00 0.00 5.36
6267 11283 2.598394 TGTCAAGCAAGCAGGCCC 60.598 61.111 0.00 0.00 0.00 5.80
6268 11284 2.647297 GTGTCAAGCAAGCAGGCC 59.353 61.111 0.00 0.00 0.00 5.19
6269 11285 1.785041 TTCGTGTCAAGCAAGCAGGC 61.785 55.000 0.00 0.00 0.00 4.85
6270 11286 0.236711 CTTCGTGTCAAGCAAGCAGG 59.763 55.000 0.00 0.00 0.00 4.85
6271 11287 0.940126 ACTTCGTGTCAAGCAAGCAG 59.060 50.000 0.00 0.00 0.00 4.24
6272 11288 1.378531 AACTTCGTGTCAAGCAAGCA 58.621 45.000 0.00 0.00 0.00 3.91
6273 11289 2.475200 AAACTTCGTGTCAAGCAAGC 57.525 45.000 0.00 0.00 0.00 4.01
6274 11290 4.279659 GGTAAAACTTCGTGTCAAGCAAG 58.720 43.478 0.00 0.00 0.00 4.01
6275 11291 3.242478 CGGTAAAACTTCGTGTCAAGCAA 60.242 43.478 0.00 0.00 0.00 3.91
6276 11292 2.285756 CGGTAAAACTTCGTGTCAAGCA 59.714 45.455 0.00 0.00 0.00 3.91
6277 11293 2.540931 TCGGTAAAACTTCGTGTCAAGC 59.459 45.455 0.00 0.00 0.00 4.01
6278 11294 3.552699 TGTCGGTAAAACTTCGTGTCAAG 59.447 43.478 0.00 0.00 0.00 3.02
6279 11295 3.519579 TGTCGGTAAAACTTCGTGTCAA 58.480 40.909 0.00 0.00 0.00 3.18
6280 11296 3.162202 TGTCGGTAAAACTTCGTGTCA 57.838 42.857 0.00 0.00 0.00 3.58
6281 11297 6.749118 ACTATATGTCGGTAAAACTTCGTGTC 59.251 38.462 0.00 0.00 0.00 3.67
6282 11298 6.529125 CACTATATGTCGGTAAAACTTCGTGT 59.471 38.462 0.00 0.00 0.00 4.49
6283 11299 6.748658 TCACTATATGTCGGTAAAACTTCGTG 59.251 38.462 0.00 0.00 0.00 4.35
6284 11300 6.855836 TCACTATATGTCGGTAAAACTTCGT 58.144 36.000 0.00 0.00 0.00 3.85
6285 11301 6.417044 CCTCACTATATGTCGGTAAAACTTCG 59.583 42.308 0.00 0.00 0.00 3.79
6286 11302 7.222224 CACCTCACTATATGTCGGTAAAACTTC 59.778 40.741 0.00 0.00 33.66 3.01
6287 11303 7.039882 CACCTCACTATATGTCGGTAAAACTT 58.960 38.462 0.00 0.00 33.66 2.66
6288 11304 6.570692 CACCTCACTATATGTCGGTAAAACT 58.429 40.000 0.00 0.00 33.66 2.66
6289 11305 5.233689 GCACCTCACTATATGTCGGTAAAAC 59.766 44.000 0.00 0.00 33.66 2.43
6290 11306 5.353938 GCACCTCACTATATGTCGGTAAAA 58.646 41.667 0.00 0.00 33.66 1.52
6291 11307 4.498513 CGCACCTCACTATATGTCGGTAAA 60.499 45.833 0.00 0.00 33.66 2.01
6292 11308 3.004002 CGCACCTCACTATATGTCGGTAA 59.996 47.826 0.00 0.00 33.66 2.85
6293 11309 2.551032 CGCACCTCACTATATGTCGGTA 59.449 50.000 0.00 0.00 33.66 4.02
6294 11310 1.337071 CGCACCTCACTATATGTCGGT 59.663 52.381 0.00 0.00 34.77 4.69
6295 11311 1.335964 CCGCACCTCACTATATGTCGG 60.336 57.143 0.00 0.00 0.00 4.79
6296 11312 1.335964 CCCGCACCTCACTATATGTCG 60.336 57.143 0.00 0.00 0.00 4.35
6297 11313 1.961394 TCCCGCACCTCACTATATGTC 59.039 52.381 0.00 0.00 0.00 3.06
6298 11314 2.082140 TCCCGCACCTCACTATATGT 57.918 50.000 0.00 0.00 0.00 2.29
6299 11315 2.354103 CCATCCCGCACCTCACTATATG 60.354 54.545 0.00 0.00 0.00 1.78
6300 11316 1.902508 CCATCCCGCACCTCACTATAT 59.097 52.381 0.00 0.00 0.00 0.86
6301 11317 1.133294 TCCATCCCGCACCTCACTATA 60.133 52.381 0.00 0.00 0.00 1.31
6302 11318 0.398522 TCCATCCCGCACCTCACTAT 60.399 55.000 0.00 0.00 0.00 2.12
6303 11319 0.398522 ATCCATCCCGCACCTCACTA 60.399 55.000 0.00 0.00 0.00 2.74
6304 11320 1.690633 ATCCATCCCGCACCTCACT 60.691 57.895 0.00 0.00 0.00 3.41
6305 11321 1.524621 CATCCATCCCGCACCTCAC 60.525 63.158 0.00 0.00 0.00 3.51
6306 11322 1.971505 GACATCCATCCCGCACCTCA 61.972 60.000 0.00 0.00 0.00 3.86
6307 11323 1.227674 GACATCCATCCCGCACCTC 60.228 63.158 0.00 0.00 0.00 3.85
6308 11324 1.348008 ATGACATCCATCCCGCACCT 61.348 55.000 0.00 0.00 0.00 4.00
6309 11325 0.886490 GATGACATCCATCCCGCACC 60.886 60.000 3.89 0.00 44.59 5.01
6310 11326 2.621763 GATGACATCCATCCCGCAC 58.378 57.895 3.89 0.00 44.59 5.34
6321 11337 5.554070 TGCATAATCCGAAGATGATGACAT 58.446 37.500 4.82 0.00 42.20 3.06
6322 11338 4.959723 TGCATAATCCGAAGATGATGACA 58.040 39.130 4.82 0.70 42.20 3.58
6323 11339 5.233225 TCTGCATAATCCGAAGATGATGAC 58.767 41.667 4.82 0.00 42.20 3.06
6324 11340 5.473066 TCTGCATAATCCGAAGATGATGA 57.527 39.130 4.82 0.00 42.20 2.92
6325 11341 9.538508 TTATATCTGCATAATCCGAAGATGATG 57.461 33.333 0.00 0.00 42.42 3.07
6326 11342 9.539825 GTTATATCTGCATAATCCGAAGATGAT 57.460 33.333 0.00 0.00 31.29 2.45
6327 11343 8.531146 TGTTATATCTGCATAATCCGAAGATGA 58.469 33.333 0.00 0.00 31.29 2.92
6328 11344 8.598924 GTGTTATATCTGCATAATCCGAAGATG 58.401 37.037 0.00 0.00 31.29 2.90
6329 11345 8.535335 AGTGTTATATCTGCATAATCCGAAGAT 58.465 33.333 0.00 0.00 0.00 2.40
6330 11346 7.896811 AGTGTTATATCTGCATAATCCGAAGA 58.103 34.615 0.00 0.00 0.00 2.87
6331 11347 9.809096 ATAGTGTTATATCTGCATAATCCGAAG 57.191 33.333 0.00 0.00 0.00 3.79
6340 11356 9.083422 ACTGTCTGTATAGTGTTATATCTGCAT 57.917 33.333 0.00 0.00 0.00 3.96
6341 11357 8.465273 ACTGTCTGTATAGTGTTATATCTGCA 57.535 34.615 0.00 0.00 0.00 4.41
6348 11364 7.707035 GCTGCTTAACTGTCTGTATAGTGTTAT 59.293 37.037 0.00 0.00 0.00 1.89
6349 11365 7.033791 GCTGCTTAACTGTCTGTATAGTGTTA 58.966 38.462 0.00 0.00 0.00 2.41
6350 11366 5.869888 GCTGCTTAACTGTCTGTATAGTGTT 59.130 40.000 0.00 0.00 0.00 3.32
6351 11367 5.047306 TGCTGCTTAACTGTCTGTATAGTGT 60.047 40.000 0.00 0.00 0.00 3.55
6352 11368 5.410924 TGCTGCTTAACTGTCTGTATAGTG 58.589 41.667 0.00 0.00 0.00 2.74
6353 11369 5.661056 TGCTGCTTAACTGTCTGTATAGT 57.339 39.130 0.00 0.00 0.00 2.12
6354 11370 7.545362 AAATGCTGCTTAACTGTCTGTATAG 57.455 36.000 0.00 0.00 0.00 1.31
6355 11371 7.606073 TGAAAATGCTGCTTAACTGTCTGTATA 59.394 33.333 0.00 0.00 0.00 1.47
6356 11372 6.430925 TGAAAATGCTGCTTAACTGTCTGTAT 59.569 34.615 0.00 0.00 0.00 2.29
6357 11373 5.762711 TGAAAATGCTGCTTAACTGTCTGTA 59.237 36.000 0.00 0.00 0.00 2.74
6358 11374 4.580167 TGAAAATGCTGCTTAACTGTCTGT 59.420 37.500 0.00 0.00 0.00 3.41
6359 11375 5.112220 TGAAAATGCTGCTTAACTGTCTG 57.888 39.130 0.00 0.00 0.00 3.51
6360 11376 5.972107 ATGAAAATGCTGCTTAACTGTCT 57.028 34.783 0.00 0.00 0.00 3.41
6361 11377 6.846350 ACTATGAAAATGCTGCTTAACTGTC 58.154 36.000 0.00 0.00 0.00 3.51
6362 11378 6.656693 AGACTATGAAAATGCTGCTTAACTGT 59.343 34.615 0.00 0.00 0.00 3.55
6363 11379 6.965500 CAGACTATGAAAATGCTGCTTAACTG 59.035 38.462 0.00 0.00 0.00 3.16
6364 11380 6.656693 ACAGACTATGAAAATGCTGCTTAACT 59.343 34.615 0.00 0.00 0.00 2.24
6365 11381 6.846350 ACAGACTATGAAAATGCTGCTTAAC 58.154 36.000 0.00 0.00 0.00 2.01
6366 11382 8.615211 CATACAGACTATGAAAATGCTGCTTAA 58.385 33.333 0.00 0.00 0.00 1.85
6367 11383 7.986889 TCATACAGACTATGAAAATGCTGCTTA 59.013 33.333 0.00 0.00 31.66 3.09
6368 11384 6.825213 TCATACAGACTATGAAAATGCTGCTT 59.175 34.615 0.00 0.00 31.66 3.91
6369 11385 6.351711 TCATACAGACTATGAAAATGCTGCT 58.648 36.000 0.00 0.00 31.66 4.24
6370 11386 6.481313 TCTCATACAGACTATGAAAATGCTGC 59.519 38.462 0.00 0.00 34.00 5.25
6371 11387 7.171167 CCTCTCATACAGACTATGAAAATGCTG 59.829 40.741 0.00 0.00 34.00 4.41
6372 11388 7.215789 CCTCTCATACAGACTATGAAAATGCT 58.784 38.462 0.00 0.00 34.00 3.79
6373 11389 6.073331 GCCTCTCATACAGACTATGAAAATGC 60.073 42.308 0.00 0.00 34.00 3.56
6374 11390 6.988580 TGCCTCTCATACAGACTATGAAAATG 59.011 38.462 0.00 0.00 34.00 2.32
6375 11391 7.129457 TGCCTCTCATACAGACTATGAAAAT 57.871 36.000 0.00 0.00 34.00 1.82
6376 11392 6.544928 TGCCTCTCATACAGACTATGAAAA 57.455 37.500 0.00 0.00 34.00 2.29
6377 11393 6.737720 ATGCCTCTCATACAGACTATGAAA 57.262 37.500 0.00 0.00 34.00 2.69
6378 11394 6.737720 AATGCCTCTCATACAGACTATGAA 57.262 37.500 0.00 0.00 34.00 2.57
6379 11395 6.552725 AGAAATGCCTCTCATACAGACTATGA 59.447 38.462 0.00 0.00 34.33 2.15
6380 11396 6.757237 AGAAATGCCTCTCATACAGACTATG 58.243 40.000 0.00 0.00 34.33 2.23
6381 11397 6.014669 GGAGAAATGCCTCTCATACAGACTAT 60.015 42.308 9.12 0.00 43.19 2.12
6382 11398 5.303078 GGAGAAATGCCTCTCATACAGACTA 59.697 44.000 9.12 0.00 43.19 2.59
6383 11399 4.100808 GGAGAAATGCCTCTCATACAGACT 59.899 45.833 9.12 0.00 43.19 3.24
6384 11400 4.100808 AGGAGAAATGCCTCTCATACAGAC 59.899 45.833 9.12 0.00 43.19 3.51
6385 11401 4.293494 AGGAGAAATGCCTCTCATACAGA 58.707 43.478 9.12 0.00 43.19 3.41
6386 11402 4.630111 GAGGAGAAATGCCTCTCATACAG 58.370 47.826 0.00 0.00 46.70 2.74
6387 11403 4.679373 GAGGAGAAATGCCTCTCATACA 57.321 45.455 0.00 0.00 46.70 2.29
6394 11410 3.460857 ACATACGAGGAGAAATGCCTC 57.539 47.619 0.00 0.00 46.74 4.70
6395 11411 4.406003 ACTTACATACGAGGAGAAATGCCT 59.594 41.667 0.00 0.00 38.81 4.75
6396 11412 4.508124 CACTTACATACGAGGAGAAATGCC 59.492 45.833 0.00 0.00 0.00 4.40
6397 11413 5.348986 TCACTTACATACGAGGAGAAATGC 58.651 41.667 0.00 0.00 0.00 3.56
6398 11414 9.529325 TTAATCACTTACATACGAGGAGAAATG 57.471 33.333 0.00 0.00 0.00 2.32
6399 11415 9.751542 CTTAATCACTTACATACGAGGAGAAAT 57.248 33.333 0.00 0.00 0.00 2.17
6400 11416 7.705325 GCTTAATCACTTACATACGAGGAGAAA 59.295 37.037 0.00 0.00 0.00 2.52
6401 11417 7.147966 TGCTTAATCACTTACATACGAGGAGAA 60.148 37.037 0.00 0.00 0.00 2.87
6402 11418 6.320418 TGCTTAATCACTTACATACGAGGAGA 59.680 38.462 0.00 0.00 0.00 3.71
6403 11419 6.504398 TGCTTAATCACTTACATACGAGGAG 58.496 40.000 0.00 0.00 0.00 3.69
6404 11420 6.459670 TGCTTAATCACTTACATACGAGGA 57.540 37.500 0.00 0.00 0.00 3.71
6405 11421 5.175856 GCTGCTTAATCACTTACATACGAGG 59.824 44.000 0.00 0.00 0.00 4.63
6406 11422 5.748630 TGCTGCTTAATCACTTACATACGAG 59.251 40.000 0.00 0.00 0.00 4.18
6407 11423 5.656480 TGCTGCTTAATCACTTACATACGA 58.344 37.500 0.00 0.00 0.00 3.43
6408 11424 5.557136 GCTGCTGCTTAATCACTTACATACG 60.557 44.000 8.53 0.00 36.03 3.06
6409 11425 5.294306 TGCTGCTGCTTAATCACTTACATAC 59.706 40.000 17.00 0.00 40.48 2.39
6410 11426 5.427378 TGCTGCTGCTTAATCACTTACATA 58.573 37.500 17.00 0.00 40.48 2.29
6411 11427 4.264253 TGCTGCTGCTTAATCACTTACAT 58.736 39.130 17.00 0.00 40.48 2.29
6412 11428 3.673902 TGCTGCTGCTTAATCACTTACA 58.326 40.909 17.00 0.00 40.48 2.41
6413 11429 3.486542 GCTGCTGCTGCTTAATCACTTAC 60.487 47.826 22.10 0.00 40.48 2.34
6414 11430 2.679837 GCTGCTGCTGCTTAATCACTTA 59.320 45.455 22.10 0.00 40.48 2.24
6415 11431 1.471684 GCTGCTGCTGCTTAATCACTT 59.528 47.619 22.10 0.00 40.48 3.16
6416 11432 1.093159 GCTGCTGCTGCTTAATCACT 58.907 50.000 22.10 0.00 40.48 3.41
6417 11433 0.806868 TGCTGCTGCTGCTTAATCAC 59.193 50.000 27.67 1.98 40.48 3.06
6418 11434 1.092348 CTGCTGCTGCTGCTTAATCA 58.908 50.000 27.67 9.42 40.48 2.57
6419 11435 3.920144 CTGCTGCTGCTGCTTAATC 57.080 52.632 27.67 3.30 40.48 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.