AutoCloner

Multiple sequence alignment - TraesCS1B01G011900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G011900	chr1B	100.000	2549	0	0	1	2549	5761230	5758682	0.000000e+00	4708.0
1	TraesCS1B01G011900	chr1B	93.839	1688	73	18	799	2478	6481470	6483134	0.000000e+00	2512.0
2	TraesCS1B01G011900	chr1B	91.304	253	18	3	1	250	6480647	6480898	2.430000e-90	342.0
3	TraesCS1B01G011900	chr1B	87.319	276	23	6	549	818	6481190	6481459	3.190000e-79	305.0
4	TraesCS1B01G011900	chr1B	91.406	128	11	0	2354	2481	7697914	7698041	2.610000e-40	176.0
5	TraesCS1B01G011900	chr1B	91.406	128	10	1	2354	2481	6065219	6065093	9.370000e-40	174.0
6	TraesCS1B01G011900	chr1B	85.806	155	8	1	2194	2334	7697699	7697853	4.390000e-33	152.0
7	TraesCS1B01G011900	chr1B	85.350	157	9	7	2194	2336	22666002	22666158	1.580000e-32	150.0
8	TraesCS1B01G011900	chr1B	95.238	84	4	0	2199	2282	5699896	5699813	1.590000e-27	134.0
9	TraesCS1B01G011900	chr1B	100.000	37	0	0	2513	2549	6483137	6483173	4.550000e-08	69.4
10	TraesCS1B01G011900	chr1D	88.959	1748	115	32	1	1703	3967871	3969585	0.000000e+00	2087.0
11	TraesCS1B01G011900	chr1D	84.808	757	51	39	1773	2481	3969724	3970464	0.000000e+00	702.0
12	TraesCS1B01G011900	chr1D	85.974	385	28	17	1324	1705	3618233	3617872	3.080000e-104	388.0
13	TraesCS1B01G011900	chr1D	82.199	382	25	14	1993	2336	5130323	5130699	3.210000e-74	289.0
14	TraesCS1B01G011900	chr1A	87.469	1213	83	32	516	1703	6334854	6336022	0.000000e+00	1334.0
15	TraesCS1B01G011900	chr1A	91.091	898	45	15	807	1703	4503600	4502737	0.000000e+00	1182.0
16	TraesCS1B01G011900	chr1A	91.091	898	45	15	807	1703	5498977	5499840	0.000000e+00	1182.0
17	TraesCS1B01G011900	chr1A	91.551	722	27	14	982	1703	5500631	5501318	0.000000e+00	965.0
18	TraesCS1B01G011900	chr1A	87.140	521	35	13	1	498	5498080	5498591	1.710000e-156	562.0
19	TraesCS1B01G011900	chr1A	88.940	434	28	8	85	498	4504419	4503986	3.760000e-143	518.0
20	TraesCS1B01G011900	chr1A	81.445	609	42	29	1767	2336	6336149	6336725	1.400000e-117	433.0
21	TraesCS1B01G011900	chr1A	100.000	56	0	0	1990	2045	4502479	4502424	1.250000e-18	104.0
22	TraesCS1B01G011900	chr1A	100.000	56	0	0	1990	2045	5500098	5500153	1.250000e-18	104.0
23	TraesCS1B01G011900	chr1A	100.000	56	0	0	1990	2045	5501576	5501631	1.250000e-18	104.0
24	TraesCS1B01G011900	chr1A	95.385	65	1	2	434	498	6334748	6334810	4.490000e-18	102.0
25	TraesCS1B01G011900	chr1A	90.789	76	6	1	1704	1779	6336051	6336125	1.610000e-17	100.0
26	TraesCS1B01G011900	chr1A	89.474	76	4	2	1707	1779	4502705	4502631	2.700000e-15	93.5
27	TraesCS1B01G011900	chr1A	88.608	79	5	2	1704	1779	5499869	5499946	2.700000e-15	93.5
28	TraesCS1B01G011900	chr1A	88.608	79	5	2	1704	1779	5501347	5501424	2.700000e-15	93.5
29	TraesCS1B01G011900	chr5B	87.083	689	71	9	867	1547	55504729	55504051	0.000000e+00	763.0
30	TraesCS1B01G011900	chr5B	81.773	203	23	7	2168	2359	55503523	55503324	9.440000e-35	158.0
31	TraesCS1B01G011900	chr5D	86.727	663	71	10	867	1520	52327723	52327069	0.000000e+00	721.0
32	TraesCS1B01G011900	chr5D	84.000	175	17	7	2168	2334	52326494	52326323	9.440000e-35	158.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G011900	chr1B	5758682	5761230	2548	True	4708.000000	4708	100.000000	1	2549	1	chr1B.!!$R2	2548
1	TraesCS1B01G011900	chr1B	6480647	6483173	2526	False	807.100000	2512	93.115500	1	2549	4	chr1B.!!$F2	2548
2	TraesCS1B01G011900	chr1D	3967871	3970464	2593	False	1394.500000	2087	86.883500	1	2481	2	chr1D.!!$F2	2480
3	TraesCS1B01G011900	chr1A	6334748	6336725	1977	False	492.250000	1334	88.772000	434	2336	4	chr1A.!!$F2	1902
4	TraesCS1B01G011900	chr1A	4502424	4504419	1995	True	474.375000	1182	92.376250	85	2045	4	chr1A.!!$R1	1960
5	TraesCS1B01G011900	chr1A	5498080	5501631	3551	False	443.428571	1182	92.428286	1	2045	7	chr1A.!!$F1	2044
6	TraesCS1B01G011900	chr5B	55503324	55504729	1405	True	460.500000	763	84.428000	867	2359	2	chr5B.!!$R1	1492
7	TraesCS1B01G011900	chr5D	52326323	52327723	1400	True	439.500000	721	85.363500	867	2334	2	chr5D.!!$R1	1467

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
762	860	0.685458	GATGCCCTGCCCTCATGTTT	60.685	55.0	0.0	0.0	0.0	2.83	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2488	2976	0.771127	TTGTGCTTTGGCCTCTACCT	59.229	50.0	3.32	0.0	37.74	3.08	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
99	103	4.358310	TGGTGATCCTAGTAGATCCCTGAT	59.642	45.833	0.00	0.00	41.73	2.90
156	160	4.458989	GCCCTCATGTTGTCAATGTAGAAA	59.541	41.667	0.00	0.00	0.00	2.52
179	183	6.753913	ATCAGTTTAGAGCCCAGATATTCA	57.246	37.500	0.00	0.00	0.00	2.57
224	228	6.423776	TCTTTCATGAGGCCTTCAATTTTT	57.576	33.333	6.77	0.00	39.77	1.94
255	259	4.260985	TGTGCGATTATGTTGTTGAGGAT	58.739	39.130	0.00	0.00	0.00	3.24
257	261	6.054941	TGTGCGATTATGTTGTTGAGGATAT	58.945	36.000	0.00	0.00	0.00	1.63
258	262	6.018016	TGTGCGATTATGTTGTTGAGGATATG	60.018	38.462	0.00	0.00	0.00	1.78
259	263	5.049474	TGCGATTATGTTGTTGAGGATATGC	60.049	40.000	0.00	0.00	0.00	3.14
260	264	5.180117	GCGATTATGTTGTTGAGGATATGCT	59.820	40.000	0.00	0.00	0.00	3.79
261	265	6.368791	GCGATTATGTTGTTGAGGATATGCTA	59.631	38.462	0.00	0.00	0.00	3.49
366	404	4.065088	GCACCTCAACAGTTTGTGATCTA	58.935	43.478	10.27	0.00	34.02	1.98
390	428	1.485480	GGCTAGGTAGGTTGAACCCTC	59.515	57.143	11.41	4.29	39.75	4.30
412	450	1.485124	CCAAAATTACCAGAGGGGGC	58.515	55.000	0.00	0.00	42.91	5.80
599	683	2.761208	GCCAGGAGCTCTACTGTTTCTA	59.239	50.000	14.64	0.00	39.93	2.10
762	860	0.685458	GATGCCCTGCCCTCATGTTT	60.685	55.000	0.00	0.00	0.00	2.83
766	864	1.204704	GCCCTGCCCTCATGTTTTTAC	59.795	52.381	0.00	0.00	0.00	2.01
782	880	9.599322	CATGTTTTTACTGTAGAATTCAGTGTC	57.401	33.333	8.44	0.00	44.41	3.67
783	881	8.725405	TGTTTTTACTGTAGAATTCAGTGTCA	57.275	30.769	8.44	0.00	44.41	3.58
805	927	5.591472	TCAAGCCCAGATATTCATTCTGTTG	59.409	40.000	0.00	0.00	39.16	3.33
837	997	2.998772	TGCTTGCGTGTTCAAGATTTC	58.001	42.857	7.60	0.00	44.61	2.17
872	1032	6.094193	TGTTAATGCACACCATTCATTCAA	57.906	33.333	0.00	0.00	42.99	2.69
913	1074	5.183713	TCATTCTGTTTAACATGCTTGGGAG	59.816	40.000	0.00	0.00	0.00	4.30
992	1156	4.005650	TGTGATGCTGTTTCAGGATTCTC	58.994	43.478	5.35	0.00	42.36	2.87
1302	1472	1.188219	AGAGCGAGAAGGTGCTGGAA	61.188	55.000	0.00	0.00	42.60	3.53
1401	1571	1.307084	GCCCTACCAGAACCCCTCT	60.307	63.158	0.00	0.00	33.23	3.69
1470	1640	0.830444	TACAGGACCCGCTCAAGTGT	60.830	55.000	0.00	0.00	0.00	3.55
1562	1750	1.379977	AGTAGGCAGTAGCGCTGGA	60.380	57.895	22.90	0.00	45.14	3.86
1563	1751	1.066587	GTAGGCAGTAGCGCTGGAG	59.933	63.158	22.90	10.41	45.14	3.86
1565	1753	2.567664	TAGGCAGTAGCGCTGGAGGA	62.568	60.000	22.90	0.00	45.14	3.71
1566	1754	2.105930	GCAGTAGCGCTGGAGGAG	59.894	66.667	22.90	4.95	45.14	3.69
1570	1758	4.075793	TAGCGCTGGAGGAGGGGT	62.076	66.667	22.90	0.00	46.33	4.95
1571	1759	3.618855	TAGCGCTGGAGGAGGGGTT	62.619	63.158	22.90	0.00	42.35	4.11
1572	1760	4.785453	GCGCTGGAGGAGGGGTTG	62.785	72.222	0.00	0.00	35.13	3.77
1573	1761	4.785453	CGCTGGAGGAGGGGTTGC	62.785	72.222	0.00	0.00	0.00	4.17
1592	1780	3.404141	GAGTCGGAGCGAGTGAGCC	62.404	68.421	0.00	0.00	39.77	4.70
1594	1782	2.989253	TCGGAGCGAGTGAGCCAA	60.989	61.111	0.00	0.00	38.01	4.52
1602	1790	1.004277	CGAGTGAGCCAAGTGTCGAC	61.004	60.000	9.11	9.11	0.00	4.20
1676	1893	5.730296	TTTTGTTTGGTGAGACCTGAAAA	57.270	34.783	0.00	0.00	39.58	2.29
1835	2193	5.105752	CGTTTGTTTGGGATGAGTTTGAAA	58.894	37.500	0.00	0.00	0.00	2.69
1836	2194	5.005299	CGTTTGTTTGGGATGAGTTTGAAAC	59.995	40.000	0.00	0.00	0.00	2.78
1839	2197	4.464244	TGTTTGGGATGAGTTTGAAACACA	59.536	37.500	10.41	10.41	36.45	3.72
1840	2198	4.916983	TTGGGATGAGTTTGAAACACAG	57.083	40.909	13.20	0.00	35.50	3.66
1850	2208	7.247728	TGAGTTTGAAACACAGTTGTATGTTC	58.752	34.615	11.02	0.00	38.08	3.18
1972	2330	5.474876	GCGGGATCAATAAAAATCTCCTGAT	59.525	40.000	0.00	0.00	32.01	2.90
1973	2331	6.569226	GCGGGATCAATAAAAATCTCCTGATG	60.569	42.308	0.00	0.00	32.01	3.07
1974	2332	6.712095	CGGGATCAATAAAAATCTCCTGATGA	59.288	38.462	0.00	0.00	32.01	2.92
1975	2333	7.392673	CGGGATCAATAAAAATCTCCTGATGAT	59.607	37.037	0.00	0.00	32.01	2.45
1976	2334	8.521176	GGGATCAATAAAAATCTCCTGATGATG	58.479	37.037	0.00	0.00	32.44	3.07
1977	2335	8.027771	GGATCAATAAAAATCTCCTGATGATGC	58.972	37.037	0.00	0.00	32.44	3.91
2078	2467	8.899771	ACCTTGTATATGTTGTTAGGCATAAAC	58.100	33.333	0.00	0.00	32.23	2.01
2369	2856	3.424170	GCAGAGCAAGAAAATCGACAGAC	60.424	47.826	0.00	0.00	0.00	3.51
2377	2865	3.499918	AGAAAATCGACAGACAAAGCCAG	59.500	43.478	0.00	0.00	0.00	4.85
2439	2927	6.443934	TTTGTCAGTTAACTAAGCAAAGCA	57.556	33.333	18.93	6.24	0.00	3.91
2493	2981	5.392767	ACACACATGTCTGAACTAGGTAG	57.607	43.478	8.21	0.00	31.55	3.18
2495	2983	5.184096	ACACACATGTCTGAACTAGGTAGAG	59.816	44.000	8.21	0.00	31.55	2.43
2496	2984	4.707448	ACACATGTCTGAACTAGGTAGAGG	59.293	45.833	0.00	0.00	0.00	3.69
2497	2985	3.702045	ACATGTCTGAACTAGGTAGAGGC	59.298	47.826	0.00	0.00	0.00	4.70
2499	2987	2.042569	TGTCTGAACTAGGTAGAGGCCA	59.957	50.000	5.01	0.00	0.00	5.36
2500	2988	3.097614	GTCTGAACTAGGTAGAGGCCAA	58.902	50.000	5.01	0.00	0.00	4.52
2501	2989	3.514309	GTCTGAACTAGGTAGAGGCCAAA	59.486	47.826	5.01	0.00	0.00	3.28
2502	2990	3.769844	TCTGAACTAGGTAGAGGCCAAAG	59.230	47.826	5.01	0.00	0.00	2.77
2503	2991	2.236395	TGAACTAGGTAGAGGCCAAAGC	59.764	50.000	5.01	0.00	38.76	3.51
2504	2992	1.952621	ACTAGGTAGAGGCCAAAGCA	58.047	50.000	5.01	0.00	42.56	3.91
2505	2993	1.555533	ACTAGGTAGAGGCCAAAGCAC	59.444	52.381	5.01	0.00	42.56	4.40
2509	2997	1.604604	GTAGAGGCCAAAGCACAACA	58.395	50.000	5.01	0.00	42.56	3.33
2510	2998	1.537202	GTAGAGGCCAAAGCACAACAG	59.463	52.381	5.01	0.00	42.56	3.16

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
71	72	6.621514	AGGGATCTACTAGGATCACCATTTTT	59.378	38.462	7.42	0.00	44.65	1.94
156	160	6.753913	TGAATATCTGGGCTCTAAACTGAT	57.246	37.500	0.00	0.00	0.00	2.90
201	205	6.041865	TCAAAAATTGAAGGCCTCATGAAAGA	59.958	34.615	5.23	0.00	36.59	2.52
224	228	3.407698	ACATAATCGCACAACCAGTTCA	58.592	40.909	0.00	0.00	0.00	3.18
258	262	9.556030	GGTAACATTCTTTAATCAAACAGTAGC	57.444	33.333	0.00	0.00	0.00	3.58
260	264	9.016438	GGGGTAACATTCTTTAATCAAACAGTA	57.984	33.333	0.00	0.00	39.74	2.74
261	265	7.039293	GGGGGTAACATTCTTTAATCAAACAGT	60.039	37.037	0.00	0.00	39.74	3.55
366	404	0.616679	TTCAACCTACCTAGCCGGCT	60.617	55.000	34.85	34.85	35.61	5.52
390	428	2.456577	CCCCTCTGGTAATTTTGGGTG	58.543	52.381	0.00	0.00	33.13	4.61
439	477	6.572182	TTGGAGATGAAGAAAGATCTGGAT	57.428	37.500	0.00	0.00	35.59	3.41
590	674	6.862209	TGTTTTGCAACATTCTAGAAACAGT	58.138	32.000	9.71	6.05	38.03	3.55
690	788	5.370880	AGGTCAAGGATCTATTAGCATGGTT	59.629	40.000	1.12	0.00	0.00	3.67
762	860	6.426937	GGCTTGACACTGAATTCTACAGTAAA	59.573	38.462	7.05	0.00	45.15	2.01
766	864	3.686726	GGGCTTGACACTGAATTCTACAG	59.313	47.826	7.05	0.00	40.68	2.74
782	880	5.359009	ACAACAGAATGAATATCTGGGCTTG	59.641	40.000	8.26	6.26	46.81	4.01
783	881	5.513233	ACAACAGAATGAATATCTGGGCTT	58.487	37.500	8.26	0.00	46.81	4.35
837	997	5.227805	GTGTGCATTAACAACATAATCGCAG	59.772	40.000	0.00	0.00	33.80	5.18
872	1032	4.045079	AGAATGAATTGCTGGGCCCTATAT	59.955	41.667	25.70	8.40	0.00	0.86
913	1074	5.177511	GGAGGTTAATTCAAGCAAACAAAGC	59.822	40.000	0.00	0.00	37.09	3.51
992	1156	0.460284	GTAGTCACCCATGGCAGACG	60.460	60.000	21.79	6.33	36.56	4.18
1123	1287	3.915575	GCCATTGTCCTGAGGCTG	58.084	61.111	0.00	0.00	43.70	4.85
1235	1405	3.406442	TCCTGGATTGCAGGAGACT	57.594	52.632	21.73	0.00	43.35	3.24
1302	1472	1.885790	GCCTCCTTCTTCTGCAGCTTT	60.886	52.381	9.47	0.00	0.00	3.51
1401	1571	3.733960	CTCTCGTCGGTGCACGGA	61.734	66.667	21.83	21.83	44.45	4.69
1452	1622	2.140792	ACACTTGAGCGGGTCCTGT	61.141	57.895	4.54	0.78	0.00	4.00
1562	1750	3.382832	CGACTCGCAACCCCTCCT	61.383	66.667	0.00	0.00	0.00	3.69
1563	1751	4.452733	CCGACTCGCAACCCCTCC	62.453	72.222	0.00	0.00	0.00	4.30
1565	1753	3.382832	CTCCGACTCGCAACCCCT	61.383	66.667	0.00	0.00	0.00	4.79
1570	1758	3.362797	ACTCGCTCCGACTCGCAA	61.363	61.111	0.00	0.00	0.00	4.85
1571	1759	4.103103	CACTCGCTCCGACTCGCA	62.103	66.667	0.00	0.00	0.00	5.10
1572	1760	3.726631	CTCACTCGCTCCGACTCGC	62.727	68.421	0.00	0.00	0.00	5.03
1573	1761	2.401592	CTCACTCGCTCCGACTCG	59.598	66.667	0.00	0.00	0.00	4.18
1602	1790	3.363970	CCGACAGAAGAAAAATCGTGTGG	60.364	47.826	0.00	0.00	0.00	4.17
1614	1802	4.697514	GATCAATCAATCCCGACAGAAGA	58.302	43.478	0.00	0.00	0.00	2.87
1676	1893	6.769822	CCAGAATTAATCTACAGCTGATGGTT	59.230	38.462	23.35	16.42	36.32	3.67
1835	2193	5.179368	CGGAAGAATGAACATACAACTGTGT	59.821	40.000	0.00	0.00	42.09	3.72
1836	2194	5.179368	ACGGAAGAATGAACATACAACTGTG	59.821	40.000	0.00	0.00	0.00	3.66
1839	2197	5.305585	ACACGGAAGAATGAACATACAACT	58.694	37.500	0.00	0.00	0.00	3.16
1840	2198	5.178623	TGACACGGAAGAATGAACATACAAC	59.821	40.000	0.00	0.00	0.00	3.32
1850	2208	5.867174	TGTACTTATGTGACACGGAAGAATG	59.133	40.000	20.35	2.05	0.00	2.67
2314	2765	5.466728	GTCTGATTGCTTCTACAACTGAACA	59.533	40.000	0.00	0.00	31.03	3.18
2369	2856	7.009540	CAGTAAAGTTTTTCAACTCTGGCTTTG	59.990	37.037	0.00	0.00	42.89	2.77
2377	2865	8.965986	ACTTGTTCAGTAAAGTTTTTCAACTC	57.034	30.769	0.00	0.00	36.65	3.01
2481	2969	3.680196	GCTTTGGCCTCTACCTAGTTCAG	60.680	52.174	3.32	0.00	0.00	3.02
2482	2970	2.236395	GCTTTGGCCTCTACCTAGTTCA	59.764	50.000	3.32	0.00	0.00	3.18
2483	2971	2.236395	TGCTTTGGCCTCTACCTAGTTC	59.764	50.000	3.32	0.00	37.74	3.01
2484	2972	2.027100	GTGCTTTGGCCTCTACCTAGTT	60.027	50.000	3.32	0.00	37.74	2.24
2485	2973	1.555533	GTGCTTTGGCCTCTACCTAGT	59.444	52.381	3.32	0.00	37.74	2.57
2487	2975	1.651737	TGTGCTTTGGCCTCTACCTA	58.348	50.000	3.32	0.00	37.74	3.08
2488	2976	0.771127	TTGTGCTTTGGCCTCTACCT	59.229	50.000	3.32	0.00	37.74	3.08
2489	2977	0.881796	GTTGTGCTTTGGCCTCTACC	59.118	55.000	3.32	0.00	37.74	3.18
2490	2978	1.537202	CTGTTGTGCTTTGGCCTCTAC	59.463	52.381	3.32	0.00	37.74	2.59
2491	2979	1.419762	TCTGTTGTGCTTTGGCCTCTA	59.580	47.619	3.32	0.00	37.74	2.43
2493	2981	1.251251	ATCTGTTGTGCTTTGGCCTC	58.749	50.000	3.32	0.00	37.74	4.70
2495	2983	2.436417	TCTATCTGTTGTGCTTTGGCC	58.564	47.619	0.00	0.00	37.74	5.36
2496	2984	3.733077	GCATCTATCTGTTGTGCTTTGGC	60.733	47.826	0.00	0.00	39.26	4.52
2497	2985	3.181493	GGCATCTATCTGTTGTGCTTTGG	60.181	47.826	0.00	0.00	36.15	3.28
2499	2987	3.689347	TGGCATCTATCTGTTGTGCTTT	58.311	40.909	0.00	0.00	36.15	3.51
2500	2988	3.354948	TGGCATCTATCTGTTGTGCTT	57.645	42.857	0.00	0.00	36.15	3.91
2501	2989	3.354948	TTGGCATCTATCTGTTGTGCT	57.645	42.857	0.00	0.00	36.15	4.40
2502	2990	3.628942	TGATTGGCATCTATCTGTTGTGC	59.371	43.478	0.00	0.00	35.17	4.57
2503	2991	4.260497	CGTGATTGGCATCTATCTGTTGTG	60.260	45.833	0.00	0.00	0.00	3.33
2504	2992	3.873361	CGTGATTGGCATCTATCTGTTGT	59.127	43.478	0.00	0.00	0.00	3.32
2505	2993	4.025396	GTCGTGATTGGCATCTATCTGTTG	60.025	45.833	0.00	0.00	0.00	3.33
2509	2997	4.141846	ACAAGTCGTGATTGGCATCTATCT	60.142	41.667	0.00	0.00	31.76	1.98
2510	2998	4.122776	ACAAGTCGTGATTGGCATCTATC	58.877	43.478	0.00	0.00	31.76	2.08

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.