Multiple sequence alignment - TraesCS1B01G011400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G011400 chr1B 100.000 2219 0 0 1 2219 5176355 5178573 0.000000e+00 4098.0
1 TraesCS1B01G011400 chr1B 95.087 631 16 2 1589 2219 5182846 5183461 0.000000e+00 979.0
2 TraesCS1B01G011400 chr1B 94.754 629 18 1 1589 2217 378615447 378616060 0.000000e+00 965.0
3 TraesCS1B01G011400 chr1B 88.553 629 35 8 1589 2217 10424013 10423422 0.000000e+00 728.0
4 TraesCS1B01G011400 chr1D 84.052 1160 89 30 338 1426 209361 208227 0.000000e+00 1029.0
5 TraesCS1B01G011400 chr1D 90.530 623 41 10 980 1587 122219 121600 0.000000e+00 808.0
6 TraesCS1B01G011400 chr1D 85.632 174 13 8 1423 1587 132411 132241 2.930000e-39 172.0
7 TraesCS1B01G011400 chr1D 95.181 83 2 2 1 81 209441 209359 1.790000e-26 130.0
8 TraesCS1B01G011400 chr6B 94.136 631 21 4 1588 2217 341974511 341973896 0.000000e+00 946.0
9 TraesCS1B01G011400 chr6B 93.641 629 26 2 1589 2217 341979412 341978798 0.000000e+00 928.0
10 TraesCS1B01G011400 chr6B 93.005 629 30 2 1589 2217 233669164 233669778 0.000000e+00 905.0
11 TraesCS1B01G011400 chr6B 89.382 631 28 8 1589 2217 233664276 233664869 0.000000e+00 758.0
12 TraesCS1B01G011400 chr6B 92.391 92 7 0 499 590 359864725 359864634 4.970000e-27 132.0
13 TraesCS1B01G011400 chr6B 92.941 85 6 0 506 590 646750142 646750058 8.320000e-25 124.0
14 TraesCS1B01G011400 chr6B 88.119 101 10 2 489 589 512256521 512256619 3.870000e-23 119.0
15 TraesCS1B01G011400 chr7B 93.482 629 27 4 1589 2217 745446971 745447585 0.000000e+00 922.0
16 TraesCS1B01G011400 chr2B 93.164 629 29 1 1589 2217 425399789 425399175 0.000000e+00 911.0
17 TraesCS1B01G011400 chr3B 93.164 629 26 4 1589 2217 30350010 30350621 0.000000e+00 907.0
18 TraesCS1B01G011400 chr3B 92.857 630 31 1 1590 2219 605284635 605284020 0.000000e+00 902.0
19 TraesCS1B01G011400 chr3B 92.687 629 31 3 1589 2217 605279750 605279137 0.000000e+00 893.0
20 TraesCS1B01G011400 chr3B 83.851 322 35 8 1589 1908 70459267 70458961 7.750000e-75 291.0
21 TraesCS1B01G011400 chr5B 92.846 629 31 1 1589 2217 643445069 643444455 0.000000e+00 900.0
22 TraesCS1B01G011400 chr5B 92.210 629 31 8 1589 2217 643449965 643449355 0.000000e+00 874.0
23 TraesCS1B01G011400 chr5B 91.892 629 36 2 1589 2217 424340857 424340244 0.000000e+00 865.0
24 TraesCS1B01G011400 chr5B 91.379 638 38 8 1582 2217 503026029 503026651 0.000000e+00 857.0
25 TraesCS1B01G011400 chr5B 87.591 274 33 1 78 351 447183500 447183228 1.280000e-82 316.0
26 TraesCS1B01G011400 chr1A 90.814 479 34 7 962 1433 4054698 4055173 1.120000e-177 632.0
27 TraesCS1B01G011400 chr1A 92.857 196 13 1 749 944 4054445 4054639 1.300000e-72 283.0
28 TraesCS1B01G011400 chr1A 89.143 175 9 2 338 504 4054063 4054235 2.230000e-50 209.0
29 TraesCS1B01G011400 chr1A 95.714 70 3 0 12 81 4053996 4054065 1.800000e-21 113.0
30 TraesCS1B01G011400 chr4D 90.421 261 25 0 80 340 145579767 145579507 5.870000e-91 344.0
31 TraesCS1B01G011400 chr4D 88.519 270 27 3 73 341 9306109 9306375 7.640000e-85 324.0
32 TraesCS1B01G011400 chr6D 90.347 259 25 0 80 338 348087860 348087602 7.590000e-90 340.0
33 TraesCS1B01G011400 chr6D 86.293 321 28 5 1589 1908 193481431 193481126 3.530000e-88 335.0
34 TraesCS1B01G011400 chr6D 88.550 262 28 1 79 340 408691763 408691504 1.280000e-82 316.0
35 TraesCS1B01G011400 chr6D 90.217 92 9 0 506 597 20553752 20553661 1.080000e-23 121.0
36 TraesCS1B01G011400 chr7D 89.655 261 27 0 80 340 363048663 363048923 1.270000e-87 333.0
37 TraesCS1B01G011400 chr7D 92.771 83 6 0 507 589 610532155 610532073 1.080000e-23 121.0
38 TraesCS1B01G011400 chr5A 90.947 243 22 0 80 322 640393798 640393556 5.910000e-86 327.0
39 TraesCS1B01G011400 chr5A 88.679 265 28 2 78 341 83022823 83023086 2.750000e-84 322.0
40 TraesCS1B01G011400 chr4A 88.550 262 28 2 80 340 321329340 321329080 1.280000e-82 316.0
41 TraesCS1B01G011400 chr4B 92.045 88 7 0 506 593 4233600 4233513 8.320000e-25 124.0
42 TraesCS1B01G011400 chr2D 92.045 88 7 0 502 589 589522340 589522253 8.320000e-25 124.0
43 TraesCS1B01G011400 chr2D 90.323 93 9 0 498 590 300888179 300888271 2.990000e-24 122.0
44 TraesCS1B01G011400 chr2A 92.857 84 4 2 506 589 654910321 654910240 1.080000e-23 121.0
45 TraesCS1B01G011400 chr7A 100.000 31 0 0 311 341 73131869 73131899 8.560000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G011400 chr1B 5176355 5178573 2218 False 4098.00 4098 100.0000 1 2219 1 chr1B.!!$F1 2218
1 TraesCS1B01G011400 chr1B 5182846 5183461 615 False 979.00 979 95.0870 1589 2219 1 chr1B.!!$F2 630
2 TraesCS1B01G011400 chr1B 378615447 378616060 613 False 965.00 965 94.7540 1589 2217 1 chr1B.!!$F3 628
3 TraesCS1B01G011400 chr1B 10423422 10424013 591 True 728.00 728 88.5530 1589 2217 1 chr1B.!!$R1 628
4 TraesCS1B01G011400 chr1D 121600 122219 619 True 808.00 808 90.5300 980 1587 1 chr1D.!!$R1 607
5 TraesCS1B01G011400 chr1D 208227 209441 1214 True 579.50 1029 89.6165 1 1426 2 chr1D.!!$R3 1425
6 TraesCS1B01G011400 chr6B 341973896 341974511 615 True 946.00 946 94.1360 1588 2217 1 chr6B.!!$R1 629
7 TraesCS1B01G011400 chr6B 341978798 341979412 614 True 928.00 928 93.6410 1589 2217 1 chr6B.!!$R2 628
8 TraesCS1B01G011400 chr6B 233669164 233669778 614 False 905.00 905 93.0050 1589 2217 1 chr6B.!!$F2 628
9 TraesCS1B01G011400 chr6B 233664276 233664869 593 False 758.00 758 89.3820 1589 2217 1 chr6B.!!$F1 628
10 TraesCS1B01G011400 chr7B 745446971 745447585 614 False 922.00 922 93.4820 1589 2217 1 chr7B.!!$F1 628
11 TraesCS1B01G011400 chr2B 425399175 425399789 614 True 911.00 911 93.1640 1589 2217 1 chr2B.!!$R1 628
12 TraesCS1B01G011400 chr3B 30350010 30350621 611 False 907.00 907 93.1640 1589 2217 1 chr3B.!!$F1 628
13 TraesCS1B01G011400 chr3B 605284020 605284635 615 True 902.00 902 92.8570 1590 2219 1 chr3B.!!$R3 629
14 TraesCS1B01G011400 chr3B 605279137 605279750 613 True 893.00 893 92.6870 1589 2217 1 chr3B.!!$R2 628
15 TraesCS1B01G011400 chr5B 643444455 643445069 614 True 900.00 900 92.8460 1589 2217 1 chr5B.!!$R3 628
16 TraesCS1B01G011400 chr5B 643449355 643449965 610 True 874.00 874 92.2100 1589 2217 1 chr5B.!!$R4 628
17 TraesCS1B01G011400 chr5B 424340244 424340857 613 True 865.00 865 91.8920 1589 2217 1 chr5B.!!$R1 628
18 TraesCS1B01G011400 chr5B 503026029 503026651 622 False 857.00 857 91.3790 1582 2217 1 chr5B.!!$F1 635
19 TraesCS1B01G011400 chr1A 4053996 4055173 1177 False 309.25 632 92.1320 12 1433 4 chr1A.!!$F1 1421

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 39 1.745115 CATTCGGGCACACGTGGAT 60.745 57.895 21.57 0.0 34.94 3.41 F
769 828 1.971695 GGTTGTTTCCGCCCTCCTG 60.972 63.158 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1016 1124 1.407851 GCATGAAGGAGATGAGCACCA 60.408 52.381 0.0 0.0 0.0 4.17 R
2127 2289 1.535462 CGATTGTTTTGCTTCGGTCCT 59.465 47.619 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 39 1.745115 CATTCGGGCACACGTGGAT 60.745 57.895 21.57 0.00 34.94 3.41
85 88 9.555727 TTATGCATTAACTATCTTTGTACTCCC 57.444 33.333 3.54 0.00 0.00 4.30
86 89 7.195374 TGCATTAACTATCTTTGTACTCCCT 57.805 36.000 0.00 0.00 0.00 4.20
87 90 7.272978 TGCATTAACTATCTTTGTACTCCCTC 58.727 38.462 0.00 0.00 0.00 4.30
88 91 6.706716 GCATTAACTATCTTTGTACTCCCTCC 59.293 42.308 0.00 0.00 0.00 4.30
89 92 6.461110 TTAACTATCTTTGTACTCCCTCCG 57.539 41.667 0.00 0.00 0.00 4.63
90 93 3.978610 ACTATCTTTGTACTCCCTCCGT 58.021 45.455 0.00 0.00 0.00 4.69
91 94 4.351127 ACTATCTTTGTACTCCCTCCGTT 58.649 43.478 0.00 0.00 0.00 4.44
92 95 4.776308 ACTATCTTTGTACTCCCTCCGTTT 59.224 41.667 0.00 0.00 0.00 3.60
93 96 4.635699 ATCTTTGTACTCCCTCCGTTTT 57.364 40.909 0.00 0.00 0.00 2.43
94 97 4.426736 TCTTTGTACTCCCTCCGTTTTT 57.573 40.909 0.00 0.00 0.00 1.94
95 98 5.549742 TCTTTGTACTCCCTCCGTTTTTA 57.450 39.130 0.00 0.00 0.00 1.52
96 99 5.299949 TCTTTGTACTCCCTCCGTTTTTAC 58.700 41.667 0.00 0.00 0.00 2.01
97 100 4.961438 TTGTACTCCCTCCGTTTTTACT 57.039 40.909 0.00 0.00 0.00 2.24
98 101 4.961438 TGTACTCCCTCCGTTTTTACTT 57.039 40.909 0.00 0.00 0.00 2.24
99 102 6.418057 TTGTACTCCCTCCGTTTTTACTTA 57.582 37.500 0.00 0.00 0.00 2.24
100 103 5.783111 TGTACTCCCTCCGTTTTTACTTAC 58.217 41.667 0.00 0.00 0.00 2.34
101 104 5.539955 TGTACTCCCTCCGTTTTTACTTACT 59.460 40.000 0.00 0.00 0.00 2.24
102 105 5.144692 ACTCCCTCCGTTTTTACTTACTC 57.855 43.478 0.00 0.00 0.00 2.59
103 106 4.020751 ACTCCCTCCGTTTTTACTTACTCC 60.021 45.833 0.00 0.00 0.00 3.85
104 107 3.056607 TCCCTCCGTTTTTACTTACTCCG 60.057 47.826 0.00 0.00 0.00 4.63
105 108 2.669924 CCTCCGTTTTTACTTACTCCGC 59.330 50.000 0.00 0.00 0.00 5.54
106 109 2.327568 TCCGTTTTTACTTACTCCGCG 58.672 47.619 0.00 0.00 0.00 6.46
107 110 2.061028 CCGTTTTTACTTACTCCGCGT 58.939 47.619 4.92 0.00 0.00 6.01
108 111 3.057876 TCCGTTTTTACTTACTCCGCGTA 60.058 43.478 4.92 0.00 0.00 4.42
109 112 3.859386 CCGTTTTTACTTACTCCGCGTAT 59.141 43.478 4.92 0.00 0.00 3.06
110 113 4.327087 CCGTTTTTACTTACTCCGCGTATT 59.673 41.667 4.92 0.00 0.00 1.89
111 114 5.514914 CCGTTTTTACTTACTCCGCGTATTA 59.485 40.000 4.92 0.00 0.00 0.98
112 115 6.291269 CCGTTTTTACTTACTCCGCGTATTAG 60.291 42.308 4.92 0.00 0.00 1.73
113 116 6.251376 CGTTTTTACTTACTCCGCGTATTAGT 59.749 38.462 4.92 5.63 0.00 2.24
114 117 7.201350 CGTTTTTACTTACTCCGCGTATTAGTT 60.201 37.037 4.92 0.00 0.00 2.24
115 118 8.435430 GTTTTTACTTACTCCGCGTATTAGTTT 58.565 33.333 4.92 0.00 0.00 2.66
116 119 8.532977 TTTTACTTACTCCGCGTATTAGTTTT 57.467 30.769 4.92 0.00 0.00 2.43
117 120 7.510428 TTACTTACTCCGCGTATTAGTTTTG 57.490 36.000 4.92 0.45 0.00 2.44
118 121 5.713025 ACTTACTCCGCGTATTAGTTTTGA 58.287 37.500 4.92 0.00 0.00 2.69
119 122 5.574443 ACTTACTCCGCGTATTAGTTTTGAC 59.426 40.000 4.92 0.00 0.00 3.18
120 123 4.184079 ACTCCGCGTATTAGTTTTGACT 57.816 40.909 4.92 0.00 0.00 3.41
121 124 4.171754 ACTCCGCGTATTAGTTTTGACTC 58.828 43.478 4.92 0.00 0.00 3.36
122 125 4.171005 CTCCGCGTATTAGTTTTGACTCA 58.829 43.478 4.92 0.00 0.00 3.41
123 126 4.558178 TCCGCGTATTAGTTTTGACTCAA 58.442 39.130 4.92 0.00 0.00 3.02
124 127 4.624024 TCCGCGTATTAGTTTTGACTCAAG 59.376 41.667 4.92 0.00 0.00 3.02
125 128 4.387862 CCGCGTATTAGTTTTGACTCAAGT 59.612 41.667 4.92 0.00 0.00 3.16
126 129 5.444218 CCGCGTATTAGTTTTGACTCAAGTC 60.444 44.000 4.92 3.13 44.97 3.01
160 163 9.930693 ATAAAGTTTGACCAAGTTTGTACAAAA 57.069 25.926 22.14 2.59 38.32 2.44
161 164 7.646446 AAGTTTGACCAAGTTTGTACAAAAC 57.354 32.000 22.14 15.59 35.16 2.43
162 165 6.750148 AGTTTGACCAAGTTTGTACAAAACA 58.250 32.000 22.14 12.29 35.16 2.83
163 166 7.210873 AGTTTGACCAAGTTTGTACAAAACAA 58.789 30.769 22.14 16.42 46.41 2.83
217 220 8.638629 TGATGTGGAAATATATGCAATGATGA 57.361 30.769 0.00 0.00 0.00 2.92
218 221 9.080097 TGATGTGGAAATATATGCAATGATGAA 57.920 29.630 0.00 0.00 0.00 2.57
221 224 8.525316 TGTGGAAATATATGCAATGATGAATCC 58.475 33.333 0.00 0.00 0.00 3.01
222 225 8.525316 GTGGAAATATATGCAATGATGAATCCA 58.475 33.333 0.00 0.00 0.00 3.41
223 226 9.091220 TGGAAATATATGCAATGATGAATCCAA 57.909 29.630 0.00 0.00 0.00 3.53
240 243 9.690913 ATGAATCCAATGATATATACTTGGTGG 57.309 33.333 18.54 7.79 39.33 4.61
241 244 8.668653 TGAATCCAATGATATATACTTGGTGGT 58.331 33.333 18.54 9.88 39.33 4.16
242 245 8.868522 AATCCAATGATATATACTTGGTGGTG 57.131 34.615 18.54 1.97 39.33 4.17
243 246 7.387265 TCCAATGATATATACTTGGTGGTGT 57.613 36.000 18.54 0.00 39.33 4.16
244 247 8.499288 TCCAATGATATATACTTGGTGGTGTA 57.501 34.615 18.54 3.57 39.33 2.90
245 248 9.111519 TCCAATGATATATACTTGGTGGTGTAT 57.888 33.333 18.54 0.00 39.33 2.29
314 317 8.810652 TTTGACTTTAGACAAACCAAATATGC 57.189 30.769 3.81 0.00 35.47 3.14
315 318 6.607689 TGACTTTAGACAAACCAAATATGCG 58.392 36.000 0.00 0.00 0.00 4.73
316 319 5.949735 ACTTTAGACAAACCAAATATGCGG 58.050 37.500 0.00 0.00 0.00 5.69
317 320 5.708230 ACTTTAGACAAACCAAATATGCGGA 59.292 36.000 0.00 0.00 0.00 5.54
318 321 5.811399 TTAGACAAACCAAATATGCGGAG 57.189 39.130 0.00 0.00 0.00 4.63
319 322 3.686016 AGACAAACCAAATATGCGGAGT 58.314 40.909 0.00 0.00 0.00 3.85
320 323 4.839121 AGACAAACCAAATATGCGGAGTA 58.161 39.130 0.00 0.00 0.00 2.59
321 324 5.250200 AGACAAACCAAATATGCGGAGTAA 58.750 37.500 0.00 0.00 0.00 2.24
322 325 5.708230 AGACAAACCAAATATGCGGAGTAAA 59.292 36.000 0.00 0.00 0.00 2.01
323 326 6.377146 AGACAAACCAAATATGCGGAGTAAAT 59.623 34.615 0.00 0.00 0.00 1.40
324 327 7.554835 AGACAAACCAAATATGCGGAGTAAATA 59.445 33.333 0.00 0.00 0.00 1.40
325 328 8.057536 ACAAACCAAATATGCGGAGTAAATAA 57.942 30.769 0.00 0.00 0.00 1.40
326 329 8.524487 ACAAACCAAATATGCGGAGTAAATAAA 58.476 29.630 0.00 0.00 0.00 1.40
327 330 9.360093 CAAACCAAATATGCGGAGTAAATAAAA 57.640 29.630 0.00 0.00 0.00 1.52
328 331 9.930693 AAACCAAATATGCGGAGTAAATAAAAA 57.069 25.926 0.00 0.00 0.00 1.94
329 332 8.920509 ACCAAATATGCGGAGTAAATAAAAAC 57.079 30.769 0.00 0.00 0.00 2.43
330 333 8.524487 ACCAAATATGCGGAGTAAATAAAAACA 58.476 29.630 0.00 0.00 0.00 2.83
331 334 9.019764 CCAAATATGCGGAGTAAATAAAAACAG 57.980 33.333 0.00 0.00 0.00 3.16
332 335 9.781834 CAAATATGCGGAGTAAATAAAAACAGA 57.218 29.630 0.00 0.00 0.00 3.41
334 337 8.958119 ATATGCGGAGTAAATAAAAACAGAGA 57.042 30.769 0.00 0.00 0.00 3.10
335 338 6.721571 TGCGGAGTAAATAAAAACAGAGAG 57.278 37.500 0.00 0.00 0.00 3.20
336 339 6.460781 TGCGGAGTAAATAAAAACAGAGAGA 58.539 36.000 0.00 0.00 0.00 3.10
337 340 6.590292 TGCGGAGTAAATAAAAACAGAGAGAG 59.410 38.462 0.00 0.00 0.00 3.20
338 341 6.590677 GCGGAGTAAATAAAAACAGAGAGAGT 59.409 38.462 0.00 0.00 0.00 3.24
339 342 7.758528 GCGGAGTAAATAAAAACAGAGAGAGTA 59.241 37.037 0.00 0.00 0.00 2.59
357 360 9.384764 GAGAGAGTATGTAGCAAAATAACCTTT 57.615 33.333 0.00 0.00 0.00 3.11
453 464 6.239289 CCACAAACCAACTCTTTAATGGTGAT 60.239 38.462 0.00 0.00 46.46 3.06
509 520 8.123639 TCACAACTAGTTCTAAATAGCACTCT 57.876 34.615 4.77 0.00 32.25 3.24
513 524 7.576861 ACTAGTTCTAAATAGCACTCTCTCC 57.423 40.000 0.00 0.00 32.25 3.71
514 525 5.508200 AGTTCTAAATAGCACTCTCTCCG 57.492 43.478 0.00 0.00 0.00 4.63
527 538 8.008513 AGCACTCTCTCCGTAAAGAAATATAA 57.991 34.615 0.00 0.00 0.00 0.98
534 545 9.804758 CTCTCCGTAAAGAAATATAAGAGTGTT 57.195 33.333 0.00 0.00 0.00 3.32
732 743 8.734030 GCGTTCATTAATTAAGTTTATGCAGAC 58.266 33.333 3.94 0.00 29.23 3.51
769 828 1.971695 GGTTGTTTCCGCCCTCCTG 60.972 63.158 0.00 0.00 0.00 3.86
819 878 5.296780 CGTTCTGCATATTATGGAAACCACT 59.703 40.000 5.84 0.00 35.80 4.00
855 914 5.353394 AACAGAACTTTCTACAGACCACA 57.647 39.130 0.00 0.00 35.34 4.17
1016 1124 0.548682 AAGATGCAGGACTGGGGTCT 60.549 55.000 1.01 0.00 41.82 3.85
1066 1174 2.449518 TGTCCCCAGGGCTTGTCA 60.450 61.111 0.00 0.00 34.68 3.58
1087 1195 3.483954 CAGATCCCTGGCAAATCGT 57.516 52.632 0.00 0.00 36.77 3.73
1107 1215 2.507102 ACGATCGAGTGCGGCAAG 60.507 61.111 24.34 0.00 38.28 4.01
1181 1289 1.148759 GATGCCTTCTTCCTCGTCGC 61.149 60.000 0.00 0.00 0.00 5.19
1235 1343 7.797062 TCATCATGAGTAGTAGAGTACTCTGT 58.203 38.462 31.47 21.43 46.32 3.41
1242 1350 6.540995 AGTAGTAGAGTACTCTGTTTCACCA 58.459 40.000 31.47 10.70 40.71 4.17
1262 1370 8.856153 TCACCATGTTCTAGCTGTTTATTTTA 57.144 30.769 0.00 0.00 0.00 1.52
1263 1371 8.946085 TCACCATGTTCTAGCTGTTTATTTTAG 58.054 33.333 0.00 0.00 0.00 1.85
1311 1421 4.555262 TGCTTGTTAATTAGTTTGCCTGC 58.445 39.130 0.00 0.00 0.00 4.85
1312 1422 3.926527 GCTTGTTAATTAGTTTGCCTGCC 59.073 43.478 0.00 0.00 0.00 4.85
1313 1423 4.494484 CTTGTTAATTAGTTTGCCTGCCC 58.506 43.478 0.00 0.00 0.00 5.36
1314 1424 3.773560 TGTTAATTAGTTTGCCTGCCCT 58.226 40.909 0.00 0.00 0.00 5.19
1315 1425 3.761752 TGTTAATTAGTTTGCCTGCCCTC 59.238 43.478 0.00 0.00 0.00 4.30
1316 1426 2.603075 AATTAGTTTGCCTGCCCTCA 57.397 45.000 0.00 0.00 0.00 3.86
1317 1427 2.603075 ATTAGTTTGCCTGCCCTCAA 57.397 45.000 0.00 0.00 0.00 3.02
1318 1428 2.603075 TTAGTTTGCCTGCCCTCAAT 57.397 45.000 0.00 0.00 0.00 2.57
1319 1429 2.128771 TAGTTTGCCTGCCCTCAATC 57.871 50.000 0.00 0.00 0.00 2.67
1320 1430 0.112995 AGTTTGCCTGCCCTCAATCA 59.887 50.000 0.00 0.00 0.00 2.57
1321 1431 1.188863 GTTTGCCTGCCCTCAATCAT 58.811 50.000 0.00 0.00 0.00 2.45
1326 1436 0.744874 CCTGCCCTCAATCATTGCTG 59.255 55.000 0.00 0.00 0.00 4.41
1370 1517 8.306761 GGTGGGATCATGTGAAATTAATATTCC 58.693 37.037 0.00 0.00 0.00 3.01
1454 1601 8.194104 TGCTTTGCAACTTTATTTAGTTCTTCA 58.806 29.630 0.00 0.00 36.24 3.02
1455 1602 9.196552 GCTTTGCAACTTTATTTAGTTCTTCAT 57.803 29.630 0.00 0.00 36.24 2.57
1479 1626 8.834465 CATTTTGTCTATATGTCCTTTGAGGAG 58.166 37.037 0.00 0.00 46.90 3.69
1488 1635 1.172180 CCTTTGAGGAGTTGCGGCAA 61.172 55.000 12.11 12.11 37.67 4.52
1550 1710 3.191078 AGCTGGCAATACTGTCATCTC 57.809 47.619 0.00 0.00 36.34 2.75
1573 1733 5.715279 TCCTGAACTAGCTATAACACACACT 59.285 40.000 0.00 0.00 0.00 3.55
1574 1734 5.807520 CCTGAACTAGCTATAACACACACTG 59.192 44.000 0.00 0.00 0.00 3.66
1579 1739 6.266323 ACTAGCTATAACACACACTGATTCG 58.734 40.000 0.00 0.00 0.00 3.34
1660 1820 8.082672 TCAAATGGAGAAGATCTACATGAGAA 57.917 34.615 5.86 0.00 46.97 2.87
1661 1821 8.202811 TCAAATGGAGAAGATCTACATGAGAAG 58.797 37.037 5.86 0.00 46.97 2.85
1662 1822 7.911130 AATGGAGAAGATCTACATGAGAAGA 57.089 36.000 5.86 0.00 46.97 2.87
1663 1823 8.495160 AATGGAGAAGATCTACATGAGAAGAT 57.505 34.615 5.86 4.68 46.97 2.40
1664 1824 7.523293 TGGAGAAGATCTACATGAGAAGATC 57.477 40.000 20.29 20.29 45.61 2.75
1673 1833 9.230122 GATCTACATGAGAAGATCTACATGAGA 57.770 37.037 28.11 24.81 43.14 3.27
1762 1922 3.309954 GGCCGAAACTATGCTCAAAGTAG 59.690 47.826 0.00 0.00 0.00 2.57
1819 1979 0.746923 GCCCCCAATACGACCTCAAC 60.747 60.000 0.00 0.00 0.00 3.18
1828 1988 5.334879 CCAATACGACCTCAACTGGAAAAAG 60.335 44.000 0.00 0.00 0.00 2.27
1923 2085 0.681175 GCAACCTGTGGAGGCAAAAT 59.319 50.000 0.00 0.00 44.33 1.82
2127 2289 1.746322 TTGGCCACGTTCACTCGGTA 61.746 55.000 3.88 0.00 34.94 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 76 4.426736 AAAAACGGAGGGAGTACAAAGA 57.573 40.909 0.00 0.00 0.00 2.52
81 84 4.502016 GGAGTAAGTAAAAACGGAGGGAG 58.498 47.826 0.00 0.00 0.00 4.30
82 85 3.056607 CGGAGTAAGTAAAAACGGAGGGA 60.057 47.826 0.00 0.00 0.00 4.20
83 86 3.256558 CGGAGTAAGTAAAAACGGAGGG 58.743 50.000 0.00 0.00 0.00 4.30
84 87 2.669924 GCGGAGTAAGTAAAAACGGAGG 59.330 50.000 0.00 0.00 0.00 4.30
85 88 2.343544 CGCGGAGTAAGTAAAAACGGAG 59.656 50.000 0.00 0.00 0.00 4.63
86 89 2.288152 ACGCGGAGTAAGTAAAAACGGA 60.288 45.455 12.47 0.00 0.00 4.69
87 90 2.061028 ACGCGGAGTAAGTAAAAACGG 58.939 47.619 12.47 0.00 0.00 4.44
88 91 5.440260 AATACGCGGAGTAAGTAAAAACG 57.560 39.130 12.47 0.00 39.04 3.60
89 92 7.511809 ACTAATACGCGGAGTAAGTAAAAAC 57.488 36.000 12.47 0.00 39.04 2.43
90 93 8.532977 AAACTAATACGCGGAGTAAGTAAAAA 57.467 30.769 12.47 0.00 39.04 1.94
91 94 8.434661 CAAAACTAATACGCGGAGTAAGTAAAA 58.565 33.333 12.47 0.00 39.04 1.52
92 95 7.812191 TCAAAACTAATACGCGGAGTAAGTAAA 59.188 33.333 12.47 0.00 39.04 2.01
93 96 7.273381 GTCAAAACTAATACGCGGAGTAAGTAA 59.727 37.037 12.47 0.00 39.04 2.24
94 97 6.747280 GTCAAAACTAATACGCGGAGTAAGTA 59.253 38.462 12.47 0.00 39.04 2.24
95 98 5.574443 GTCAAAACTAATACGCGGAGTAAGT 59.426 40.000 12.47 3.84 39.04 2.24
96 99 5.803967 AGTCAAAACTAATACGCGGAGTAAG 59.196 40.000 12.47 3.10 34.61 2.34
97 100 5.713025 AGTCAAAACTAATACGCGGAGTAA 58.287 37.500 12.47 0.00 34.61 2.24
98 101 5.106197 TGAGTCAAAACTAATACGCGGAGTA 60.106 40.000 12.47 4.11 36.31 2.59
99 102 4.171754 GAGTCAAAACTAATACGCGGAGT 58.828 43.478 12.47 2.60 35.28 3.85
100 103 4.171005 TGAGTCAAAACTAATACGCGGAG 58.829 43.478 12.47 4.43 35.28 4.63
101 104 4.177165 TGAGTCAAAACTAATACGCGGA 57.823 40.909 12.47 0.00 35.28 5.54
102 105 4.387862 ACTTGAGTCAAAACTAATACGCGG 59.612 41.667 12.47 0.00 35.28 6.46
103 106 5.511088 ACTTGAGTCAAAACTAATACGCG 57.489 39.130 3.53 3.53 35.28 6.01
134 137 9.930693 TTTTGTACAAACTTGGTCAAACTTTAT 57.069 25.926 20.43 0.00 35.95 1.40
135 138 9.194271 GTTTTGTACAAACTTGGTCAAACTTTA 57.806 29.630 20.43 0.00 35.95 1.85
136 139 7.711339 TGTTTTGTACAAACTTGGTCAAACTTT 59.289 29.630 20.43 0.00 35.95 2.66
137 140 7.210873 TGTTTTGTACAAACTTGGTCAAACTT 58.789 30.769 20.43 0.00 35.95 2.66
138 141 6.750148 TGTTTTGTACAAACTTGGTCAAACT 58.250 32.000 20.43 0.00 35.95 2.66
139 142 7.409465 TTGTTTTGTACAAACTTGGTCAAAC 57.591 32.000 20.43 12.67 43.58 2.93
191 194 9.250246 TCATCATTGCATATATTTCCACATCAT 57.750 29.630 0.00 0.00 0.00 2.45
192 195 8.638629 TCATCATTGCATATATTTCCACATCA 57.361 30.769 0.00 0.00 0.00 3.07
195 198 8.525316 GGATTCATCATTGCATATATTTCCACA 58.475 33.333 0.00 0.00 0.00 4.17
196 199 8.525316 TGGATTCATCATTGCATATATTTCCAC 58.475 33.333 0.00 0.00 0.00 4.02
197 200 8.653036 TGGATTCATCATTGCATATATTTCCA 57.347 30.769 0.00 0.00 0.00 3.53
214 217 9.690913 CCACCAAGTATATATCATTGGATTCAT 57.309 33.333 25.10 8.55 44.04 2.57
215 218 8.668653 ACCACCAAGTATATATCATTGGATTCA 58.331 33.333 25.10 0.00 44.04 2.57
216 219 8.950210 CACCACCAAGTATATATCATTGGATTC 58.050 37.037 25.10 0.00 44.04 2.52
217 220 8.448008 ACACCACCAAGTATATATCATTGGATT 58.552 33.333 25.10 12.28 44.04 3.01
218 221 7.988937 ACACCACCAAGTATATATCATTGGAT 58.011 34.615 25.10 13.04 44.04 3.41
219 222 7.387265 ACACCACCAAGTATATATCATTGGA 57.613 36.000 25.10 0.00 44.04 3.53
288 291 9.423061 GCATATTTGGTTTGTCTAAAGTCAAAT 57.577 29.630 5.84 0.00 40.27 2.32
289 292 7.593273 CGCATATTTGGTTTGTCTAAAGTCAAA 59.407 33.333 0.00 0.00 36.00 2.69
290 293 7.081349 CGCATATTTGGTTTGTCTAAAGTCAA 58.919 34.615 0.00 0.00 30.52 3.18
291 294 6.348950 CCGCATATTTGGTTTGTCTAAAGTCA 60.349 38.462 0.00 0.00 30.52 3.41
292 295 6.027749 CCGCATATTTGGTTTGTCTAAAGTC 58.972 40.000 0.00 0.00 30.52 3.01
293 296 5.708230 TCCGCATATTTGGTTTGTCTAAAGT 59.292 36.000 0.00 0.00 30.52 2.66
294 297 6.128007 ACTCCGCATATTTGGTTTGTCTAAAG 60.128 38.462 0.00 0.00 30.52 1.85
295 298 5.708230 ACTCCGCATATTTGGTTTGTCTAAA 59.292 36.000 0.00 0.00 0.00 1.85
296 299 5.250200 ACTCCGCATATTTGGTTTGTCTAA 58.750 37.500 0.00 0.00 0.00 2.10
297 300 4.839121 ACTCCGCATATTTGGTTTGTCTA 58.161 39.130 0.00 0.00 0.00 2.59
298 301 3.686016 ACTCCGCATATTTGGTTTGTCT 58.314 40.909 0.00 0.00 0.00 3.41
299 302 5.554822 TTACTCCGCATATTTGGTTTGTC 57.445 39.130 0.00 0.00 0.00 3.18
300 303 5.968528 TTTACTCCGCATATTTGGTTTGT 57.031 34.783 0.00 0.00 0.00 2.83
301 304 8.918961 TTTATTTACTCCGCATATTTGGTTTG 57.081 30.769 0.00 0.00 0.00 2.93
302 305 9.930693 TTTTTATTTACTCCGCATATTTGGTTT 57.069 25.926 0.00 0.00 0.00 3.27
303 306 9.361315 GTTTTTATTTACTCCGCATATTTGGTT 57.639 29.630 0.00 0.00 0.00 3.67
304 307 8.524487 TGTTTTTATTTACTCCGCATATTTGGT 58.476 29.630 0.00 0.00 0.00 3.67
305 308 8.918961 TGTTTTTATTTACTCCGCATATTTGG 57.081 30.769 0.00 0.00 0.00 3.28
306 309 9.781834 TCTGTTTTTATTTACTCCGCATATTTG 57.218 29.630 0.00 0.00 0.00 2.32
308 311 9.391006 TCTCTGTTTTTATTTACTCCGCATATT 57.609 29.630 0.00 0.00 0.00 1.28
309 312 8.958119 TCTCTGTTTTTATTTACTCCGCATAT 57.042 30.769 0.00 0.00 0.00 1.78
310 313 8.255206 TCTCTCTGTTTTTATTTACTCCGCATA 58.745 33.333 0.00 0.00 0.00 3.14
311 314 7.103641 TCTCTCTGTTTTTATTTACTCCGCAT 58.896 34.615 0.00 0.00 0.00 4.73
312 315 6.460781 TCTCTCTGTTTTTATTTACTCCGCA 58.539 36.000 0.00 0.00 0.00 5.69
313 316 6.590677 ACTCTCTCTGTTTTTATTTACTCCGC 59.409 38.462 0.00 0.00 0.00 5.54
314 317 9.804758 ATACTCTCTCTGTTTTTATTTACTCCG 57.195 33.333 0.00 0.00 0.00 4.63
320 323 9.944376 TGCTACATACTCTCTCTGTTTTTATTT 57.056 29.630 0.00 0.00 0.00 1.40
321 324 9.944376 TTGCTACATACTCTCTCTGTTTTTATT 57.056 29.630 0.00 0.00 0.00 1.40
322 325 9.944376 TTTGCTACATACTCTCTCTGTTTTTAT 57.056 29.630 0.00 0.00 0.00 1.40
323 326 9.772973 TTTTGCTACATACTCTCTCTGTTTTTA 57.227 29.630 0.00 0.00 0.00 1.52
324 327 8.677148 TTTTGCTACATACTCTCTCTGTTTTT 57.323 30.769 0.00 0.00 0.00 1.94
325 328 8.854614 ATTTTGCTACATACTCTCTCTGTTTT 57.145 30.769 0.00 0.00 0.00 2.43
326 329 9.944376 TTATTTTGCTACATACTCTCTCTGTTT 57.056 29.630 0.00 0.00 0.00 2.83
327 330 9.372369 GTTATTTTGCTACATACTCTCTCTGTT 57.628 33.333 0.00 0.00 0.00 3.16
328 331 7.982354 GGTTATTTTGCTACATACTCTCTCTGT 59.018 37.037 0.00 0.00 0.00 3.41
329 332 8.200792 AGGTTATTTTGCTACATACTCTCTCTG 58.799 37.037 0.00 0.00 0.00 3.35
330 333 8.312669 AGGTTATTTTGCTACATACTCTCTCT 57.687 34.615 0.00 0.00 0.00 3.10
331 334 8.950208 AAGGTTATTTTGCTACATACTCTCTC 57.050 34.615 0.00 0.00 0.00 3.20
386 389 5.420739 CCTTAATAGGGATCTAGCTCAGTCC 59.579 48.000 0.00 0.00 37.94 3.85
453 464 6.364701 TCAAGAAGGTCAAAATTCAGAAGGA 58.635 36.000 0.00 0.00 0.00 3.36
504 515 9.672086 CTCTTATATTTCTTTACGGAGAGAGTG 57.328 37.037 0.00 0.00 32.02 3.51
557 568 8.066000 CGTCCGTAAAGAAATAAAAGAGTGTTT 58.934 33.333 0.00 0.00 0.00 2.83
558 569 7.307573 CCGTCCGTAAAGAAATAAAAGAGTGTT 60.308 37.037 0.00 0.00 0.00 3.32
559 570 6.146673 CCGTCCGTAAAGAAATAAAAGAGTGT 59.853 38.462 0.00 0.00 0.00 3.55
560 571 6.366877 TCCGTCCGTAAAGAAATAAAAGAGTG 59.633 38.462 0.00 0.00 0.00 3.51
561 572 6.458210 TCCGTCCGTAAAGAAATAAAAGAGT 58.542 36.000 0.00 0.00 0.00 3.24
562 573 6.589139 ACTCCGTCCGTAAAGAAATAAAAGAG 59.411 38.462 0.00 0.00 0.00 2.85
563 574 6.458210 ACTCCGTCCGTAAAGAAATAAAAGA 58.542 36.000 0.00 0.00 0.00 2.52
564 575 6.716898 ACTCCGTCCGTAAAGAAATAAAAG 57.283 37.500 0.00 0.00 0.00 2.27
566 577 9.467258 CATATACTCCGTCCGTAAAGAAATAAA 57.533 33.333 0.00 0.00 0.00 1.40
567 578 8.084073 CCATATACTCCGTCCGTAAAGAAATAA 58.916 37.037 0.00 0.00 0.00 1.40
568 579 7.596494 CCATATACTCCGTCCGTAAAGAAATA 58.404 38.462 0.00 0.00 0.00 1.40
569 580 6.453092 CCATATACTCCGTCCGTAAAGAAAT 58.547 40.000 0.00 0.00 0.00 2.17
582 593 5.084818 TGATACCAATGCCATATACTCCG 57.915 43.478 0.00 0.00 0.00 4.63
688 699 2.053627 CGCATTTTCTGGACAGCAAAC 58.946 47.619 0.00 0.00 0.00 2.93
725 736 4.398988 TGTCTGTTTGAGTTTTGTCTGCAT 59.601 37.500 0.00 0.00 0.00 3.96
732 743 5.868801 ACAACCAATGTCTGTTTGAGTTTTG 59.131 36.000 0.00 0.00 37.96 2.44
756 815 2.150719 TGGAACAGGAGGGCGGAAA 61.151 57.895 0.00 0.00 0.00 3.13
769 828 7.100409 AGACTAGCTTCTTTATTCTGTGGAAC 58.900 38.462 0.00 0.00 33.96 3.62
824 883 9.226606 TCTGTAGAAAGTTCTGTTTCTGAAAAA 57.773 29.630 4.09 0.00 44.71 1.94
825 884 8.665685 GTCTGTAGAAAGTTCTGTTTCTGAAAA 58.334 33.333 4.09 0.00 44.71 2.29
837 896 4.067972 TGGTGTGGTCTGTAGAAAGTTC 57.932 45.455 0.00 0.00 0.00 3.01
847 906 1.888512 CAGGGAAAATGGTGTGGTCTG 59.111 52.381 0.00 0.00 0.00 3.51
855 914 0.779997 AGGACAGCAGGGAAAATGGT 59.220 50.000 0.00 0.00 0.00 3.55
1016 1124 1.407851 GCATGAAGGAGATGAGCACCA 60.408 52.381 0.00 0.00 0.00 4.17
1087 1195 4.492160 GCCGCACTCGATCGTCCA 62.492 66.667 15.94 0.00 38.10 4.02
1235 1343 7.759489 AATAAACAGCTAGAACATGGTGAAA 57.241 32.000 0.00 0.00 35.84 2.69
1262 1370 7.755373 GCAAGAACTAAACAAAACAGAAAGACT 59.245 33.333 0.00 0.00 0.00 3.24
1263 1371 7.755373 AGCAAGAACTAAACAAAACAGAAAGAC 59.245 33.333 0.00 0.00 0.00 3.01
1273 1381 5.323371 ACAAGCAGCAAGAACTAAACAAA 57.677 34.783 0.00 0.00 0.00 2.83
1280 1390 6.884280 ACTAATTAACAAGCAGCAAGAACT 57.116 33.333 0.00 0.00 0.00 3.01
1311 1421 2.022195 CCAGTCAGCAATGATTGAGGG 58.978 52.381 9.76 0.00 0.00 4.30
1312 1422 2.022195 CCCAGTCAGCAATGATTGAGG 58.978 52.381 9.76 0.00 0.00 3.86
1313 1423 2.995283 TCCCAGTCAGCAATGATTGAG 58.005 47.619 9.76 0.44 0.00 3.02
1314 1424 3.657398 ATCCCAGTCAGCAATGATTGA 57.343 42.857 9.76 0.00 0.00 2.57
1315 1425 4.825634 ACATATCCCAGTCAGCAATGATTG 59.174 41.667 0.00 0.00 0.00 2.67
1316 1426 5.057843 ACATATCCCAGTCAGCAATGATT 57.942 39.130 0.00 0.00 0.00 2.57
1317 1427 4.719026 ACATATCCCAGTCAGCAATGAT 57.281 40.909 0.00 0.00 0.00 2.45
1318 1428 4.508551 AACATATCCCAGTCAGCAATGA 57.491 40.909 0.00 0.00 0.00 2.57
1319 1429 5.125356 TGTAACATATCCCAGTCAGCAATG 58.875 41.667 0.00 0.00 0.00 2.82
1320 1430 5.372343 TGTAACATATCCCAGTCAGCAAT 57.628 39.130 0.00 0.00 0.00 3.56
1321 1431 4.835284 TGTAACATATCCCAGTCAGCAA 57.165 40.909 0.00 0.00 0.00 3.91
1326 1436 4.389374 CCACCATGTAACATATCCCAGTC 58.611 47.826 0.00 0.00 0.00 3.51
1370 1517 9.385902 CACAGTAATGTTGTCATTAAAACTCAG 57.614 33.333 0.00 0.00 44.69 3.35
1454 1601 8.552296 ACTCCTCAAAGGACATATAGACAAAAT 58.448 33.333 0.00 0.00 40.06 1.82
1455 1602 7.918076 ACTCCTCAAAGGACATATAGACAAAA 58.082 34.615 0.00 0.00 40.06 2.44
1456 1603 7.496346 ACTCCTCAAAGGACATATAGACAAA 57.504 36.000 0.00 0.00 40.06 2.83
1479 1626 3.679262 GCATCGATTTGCCGCAAC 58.321 55.556 4.98 0.00 36.60 4.17
1488 1635 5.047092 AGGACAAAATTTTGAGGCATCGATT 60.047 36.000 32.20 10.00 40.55 3.34
1550 1710 5.807520 CAGTGTGTGTTATAGCTAGTTCAGG 59.192 44.000 0.00 0.00 0.00 3.86
1573 1733 2.805671 GTCAACATCACCACACGAATCA 59.194 45.455 0.00 0.00 0.00 2.57
1574 1734 2.805671 TGTCAACATCACCACACGAATC 59.194 45.455 0.00 0.00 0.00 2.52
1660 1820 4.787551 ACGGAACTCTCTCATGTAGATCT 58.212 43.478 0.00 0.00 32.41 2.75
1661 1821 6.811253 ATACGGAACTCTCTCATGTAGATC 57.189 41.667 0.00 0.00 32.41 2.75
1662 1822 6.547880 ACAATACGGAACTCTCTCATGTAGAT 59.452 38.462 0.00 0.00 32.41 1.98
1663 1823 5.886474 ACAATACGGAACTCTCTCATGTAGA 59.114 40.000 0.00 0.00 0.00 2.59
1664 1824 6.137794 ACAATACGGAACTCTCTCATGTAG 57.862 41.667 0.00 0.00 0.00 2.74
1665 1825 6.152154 TCAACAATACGGAACTCTCTCATGTA 59.848 38.462 0.00 0.00 0.00 2.29
1666 1826 5.047306 TCAACAATACGGAACTCTCTCATGT 60.047 40.000 0.00 0.00 0.00 3.21
1667 1827 5.410924 TCAACAATACGGAACTCTCTCATG 58.589 41.667 0.00 0.00 0.00 3.07
1668 1828 5.661056 TCAACAATACGGAACTCTCTCAT 57.339 39.130 0.00 0.00 0.00 2.90
1669 1829 5.661056 ATCAACAATACGGAACTCTCTCA 57.339 39.130 0.00 0.00 0.00 3.27
1670 1830 7.426410 TCATATCAACAATACGGAACTCTCTC 58.574 38.462 0.00 0.00 0.00 3.20
1671 1831 7.348080 TCATATCAACAATACGGAACTCTCT 57.652 36.000 0.00 0.00 0.00 3.10
1672 1832 7.306051 CGTTCATATCAACAATACGGAACTCTC 60.306 40.741 0.00 0.00 36.38 3.20
1673 1833 6.475727 CGTTCATATCAACAATACGGAACTCT 59.524 38.462 0.00 0.00 36.38 3.24
1819 1979 9.665264 GACAACTTATGTAGAAACTTTTTCCAG 57.335 33.333 0.00 0.00 44.12 3.86
1828 1988 8.640291 CGAGAAGAAGACAACTTATGTAGAAAC 58.360 37.037 0.00 0.00 44.12 2.78
1923 2085 3.181455 TGCAGCTTCTGTTTCTGTCCTTA 60.181 43.478 0.00 0.00 33.43 2.69
2127 2289 1.535462 CGATTGTTTTGCTTCGGTCCT 59.465 47.619 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.