Multiple sequence alignment - TraesCS1B01G010800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G010800 chr1B 100.000 3206 0 0 1 3206 5098243 5101448 0.000000e+00 5921
1 TraesCS1B01G010800 chr1B 94.505 2111 70 11 3 2067 5055865 5057975 0.000000e+00 3214
2 TraesCS1B01G010800 chr1B 85.324 1649 146 36 264 1867 5136229 5137826 0.000000e+00 1616
3 TraesCS1B01G010800 chr1B 87.391 1142 125 13 2074 3206 5138061 5139192 0.000000e+00 1293
4 TraesCS1B01G010800 chr1B 95.383 758 35 0 2073 2830 5057949 5058706 0.000000e+00 1206
5 TraesCS1B01G010800 chr1B 86.393 1095 124 14 387 1466 5141362 5142446 0.000000e+00 1173
6 TraesCS1B01G010800 chr1B 83.159 1146 130 29 387 1515 4993295 4992196 0.000000e+00 989
7 TraesCS1B01G010800 chr1B 85.037 802 103 10 2414 3206 5143185 5143978 0.000000e+00 800
8 TraesCS1B01G010800 chr1B 83.607 793 65 17 1285 2067 5142160 5142897 0.000000e+00 684
9 TraesCS1B01G010800 chr1B 93.979 382 18 5 2830 3206 5079498 5079879 9.980000e-160 573
10 TraesCS1B01G010800 chr1B 86.404 456 53 8 17 467 5141051 5141502 1.030000e-134 490
11 TraesCS1B01G010800 chr1B 87.179 351 40 4 95 442 4993528 4993180 8.340000e-106 394
12 TraesCS1B01G010800 chr1B 94.628 242 13 0 1826 2067 5137845 5138086 3.020000e-100 375
13 TraesCS1B01G010800 chr1B 92.308 208 15 1 17 223 5136017 5136224 8.700000e-76 294
14 TraesCS1B01G010800 chr1B 89.041 146 16 0 1922 2067 4991918 4991773 7.060000e-42 182
15 TraesCS1B01G010800 chr1B 87.671 146 18 0 1922 2067 4966402 4966547 1.530000e-38 171
16 TraesCS1B01G010800 chr1D 91.959 1679 82 17 390 2067 323561 321935 0.000000e+00 2303
17 TraesCS1B01G010800 chr1D 90.901 1143 92 8 2073 3206 321961 320822 0.000000e+00 1524
18 TraesCS1B01G010800 chr1D 87.102 1132 113 14 387 1515 252045 250944 0.000000e+00 1251
19 TraesCS1B01G010800 chr1D 86.696 1150 94 27 390 1515 261243 260129 0.000000e+00 1221
20 TraesCS1B01G010800 chr1D 88.627 976 103 5 2073 3040 259708 258733 0.000000e+00 1181
21 TraesCS1B01G010800 chr1D 87.000 800 50 16 1276 2065 260439 259684 0.000000e+00 852
22 TraesCS1B01G010800 chr1D 86.507 793 63 17 1285 2067 251246 250488 0.000000e+00 832
23 TraesCS1B01G010800 chr1D 85.607 799 98 8 2418 3206 236675 235884 0.000000e+00 822
24 TraesCS1B01G010800 chr1D 88.117 648 74 3 2076 2721 380984 380338 0.000000e+00 767
25 TraesCS1B01G010800 chr1D 87.027 370 42 4 102 467 252272 251905 2.300000e-111 412
26 TraesCS1B01G010800 chr1D 86.158 354 41 7 95 445 383062 382714 3.020000e-100 375
27 TraesCS1B01G010800 chr1D 90.385 208 19 1 17 223 261519 261312 4.080000e-69 272
28 TraesCS1B01G010800 chr1D 90.411 146 14 0 1922 2067 381106 380961 3.260000e-45 193
29 TraesCS1B01G010800 chr1A 86.089 1028 101 27 387 1409 3847831 3846841 0.000000e+00 1068
30 TraesCS1B01G010800 chr1A 83.975 1142 119 28 387 1516 3909735 3910824 0.000000e+00 1037
31 TraesCS1B01G010800 chr1A 84.178 1125 116 23 387 1497 4040669 4041745 0.000000e+00 1035
32 TraesCS1B01G010800 chr1A 84.089 1125 117 23 387 1497 4032684 4033760 0.000000e+00 1029
33 TraesCS1B01G010800 chr1A 84.933 969 128 11 2082 3040 3845825 3844865 0.000000e+00 965
34 TraesCS1B01G010800 chr1A 83.726 977 135 12 2073 3040 4034145 4035106 0.000000e+00 902
35 TraesCS1B01G010800 chr1A 83.726 977 135 12 2073 3040 4042130 4043091 0.000000e+00 902
36 TraesCS1B01G010800 chr1A 83.308 659 67 16 1414 2067 3846428 3845808 4.640000e-158 568
37 TraesCS1B01G010800 chr1A 82.414 580 69 16 1285 1846 4033431 4033995 2.890000e-130 475
38 TraesCS1B01G010800 chr1A 82.414 580 69 16 1285 1846 4041416 4041980 2.890000e-130 475
39 TraesCS1B01G010800 chr1A 86.786 280 31 5 163 438 4040503 4040780 1.120000e-79 307
40 TraesCS1B01G010800 chr1A 86.429 280 32 5 163 438 4032518 4032795 5.200000e-78 302
41 TraesCS1B01G010800 chr1A 88.327 257 21 6 213 467 3847940 3847691 1.870000e-77 300
42 TraesCS1B01G010800 chr1A 87.931 174 20 1 3034 3206 4043669 4043842 1.510000e-48 204
43 TraesCS1B01G010800 chr1A 88.312 154 17 1 3034 3187 3914090 3914242 1.960000e-42 183
44 TraesCS1B01G010800 chr1A 89.412 85 6 2 17 100 3942569 3942651 1.570000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G010800 chr1B 5098243 5101448 3205 False 5921.000000 5921 100.000000 1 3206 1 chr1B.!!$F3 3205
1 TraesCS1B01G010800 chr1B 5055865 5058706 2841 False 2210.000000 3214 94.944000 3 2830 2 chr1B.!!$F4 2827
2 TraesCS1B01G010800 chr1B 5136017 5143978 7961 False 840.625000 1616 87.636500 17 3206 8 chr1B.!!$F5 3189
3 TraesCS1B01G010800 chr1B 4991773 4993528 1755 True 521.666667 989 86.459667 95 2067 3 chr1B.!!$R1 1972
4 TraesCS1B01G010800 chr1D 320822 323561 2739 True 1913.500000 2303 91.430000 390 3206 2 chr1D.!!$R4 2816
5 TraesCS1B01G010800 chr1D 258733 261519 2786 True 881.500000 1221 88.177000 17 3040 4 chr1D.!!$R3 3023
6 TraesCS1B01G010800 chr1D 250488 252272 1784 True 831.666667 1251 86.878667 102 2067 3 chr1D.!!$R2 1965
7 TraesCS1B01G010800 chr1D 235884 236675 791 True 822.000000 822 85.607000 2418 3206 1 chr1D.!!$R1 788
8 TraesCS1B01G010800 chr1D 380338 383062 2724 True 445.000000 767 88.228667 95 2721 3 chr1D.!!$R5 2626
9 TraesCS1B01G010800 chr1A 3844865 3847940 3075 True 725.250000 1068 85.664250 213 3040 4 chr1A.!!$R1 2827
10 TraesCS1B01G010800 chr1A 4032518 4035106 2588 False 677.000000 1029 84.164500 163 3040 4 chr1A.!!$F3 2877
11 TraesCS1B01G010800 chr1A 3909735 3914242 4507 False 610.000000 1037 86.143500 387 3187 2 chr1A.!!$F2 2800
12 TraesCS1B01G010800 chr1A 4040503 4043842 3339 False 584.600000 1035 85.007000 163 3206 5 chr1A.!!$F4 3043

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
887 1006 1.408702 AGTGCCACCAAACACAACATC 59.591 47.619 0.0 0.0 39.30 3.06 F
2081 3017 0.110678 AGCATCAGGGCATCATCAGG 59.889 55.000 0.0 0.0 35.83 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2085 3021 0.029834 GCGACTATGCTGGCAAATGG 59.970 55.000 0.00 0.0 0.00 3.16 R
2977 10446 3.282021 TGCTTGGAATCCATAGAAGCAC 58.718 45.455 19.22 0.0 38.31 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
454 545 8.091385 TGATGAGTCATGTATTGATAATGTGC 57.909 34.615 11.20 0.0 36.54 4.57
531 622 9.512435 GATAACGTGTACAACATTACTATCAGT 57.488 33.333 0.00 0.0 0.00 3.41
641 734 7.201679 GCTTGATCTATCTTAACAACATGCACT 60.202 37.037 0.00 0.0 0.00 4.40
648 741 5.616270 TCTTAACAACATGCACTAGGACAA 58.384 37.500 0.00 0.0 0.00 3.18
689 786 9.787532 GCAAGCTATGAAGATTTGTTTTATGTA 57.212 29.630 0.00 0.0 0.00 2.29
887 1006 1.408702 AGTGCCACCAAACACAACATC 59.591 47.619 0.00 0.0 39.30 3.06
959 1081 8.646900 AGCAATAATGAAAAGAAACCTAACCAA 58.353 29.630 0.00 0.0 0.00 3.67
1188 1313 2.242708 ACAACAACAACTAGTCCCCCAA 59.757 45.455 0.00 0.0 0.00 4.12
1215 1340 0.466189 AGCCATTATCCCAGCAACCG 60.466 55.000 0.00 0.0 0.00 4.44
1248 1418 1.492599 CCCCAACCCCAACAAACATTT 59.507 47.619 0.00 0.0 0.00 2.32
1350 1640 2.038659 CAACCACAACAACCATTCCCT 58.961 47.619 0.00 0.0 0.00 4.20
1378 1668 4.499183 TCAACAACCACAACAACCATTTC 58.501 39.130 0.00 0.0 0.00 2.17
1408 1698 1.047801 ACAACAACCATTTCCCCAGC 58.952 50.000 0.00 0.0 0.00 4.85
1409 1699 1.047002 CAACAACCATTTCCCCAGCA 58.953 50.000 0.00 0.0 0.00 4.41
1410 1700 1.415659 CAACAACCATTTCCCCAGCAA 59.584 47.619 0.00 0.0 0.00 3.91
1411 1701 2.028561 ACAACCATTTCCCCAGCAAT 57.971 45.000 0.00 0.0 0.00 3.56
1421 1741 0.318120 CCCCAGCAATCACAACAACC 59.682 55.000 0.00 0.0 0.00 3.77
1530 2283 1.455383 CCCAGTTCCAGCAACCACAC 61.455 60.000 0.00 0.0 35.28 3.82
1635 2451 2.299013 TCAGCCATCTCTACAACAACGT 59.701 45.455 0.00 0.0 0.00 3.99
1822 2638 0.230515 CGTCGTGCATTCCATCATCG 59.769 55.000 0.00 0.0 0.00 3.84
1841 2657 2.414179 GCAGCAGCAGCAACAACA 59.586 55.556 4.63 0.0 45.49 3.33
1842 2658 1.227031 GCAGCAGCAGCAACAACAA 60.227 52.632 4.63 0.0 45.49 2.83
1906 2842 3.815401 GCCACTATCTCAACAACAACAGT 59.185 43.478 0.00 0.0 0.00 3.55
1953 2889 0.549950 AGGGCATCATCCAACCTCAG 59.450 55.000 0.00 0.0 0.00 3.35
1958 2894 2.719739 CATCATCCAACCTCAGCAACT 58.280 47.619 0.00 0.0 0.00 3.16
2067 3003 4.507879 GCACCATTTGCCAGCATC 57.492 55.556 0.00 0.0 46.63 3.91
2068 3004 1.592743 GCACCATTTGCCAGCATCA 59.407 52.632 0.00 0.0 46.63 3.07
2069 3005 0.459585 GCACCATTTGCCAGCATCAG 60.460 55.000 0.00 0.0 46.63 2.90
2070 3006 0.174845 CACCATTTGCCAGCATCAGG 59.825 55.000 0.00 0.0 0.00 3.86
2071 3007 0.974010 ACCATTTGCCAGCATCAGGG 60.974 55.000 0.00 0.0 0.00 4.45
2077 3013 4.923068 CCAGCATCAGGGCATCAT 57.077 55.556 0.00 0.0 35.83 2.45
2078 3014 2.642425 CCAGCATCAGGGCATCATC 58.358 57.895 0.00 0.0 35.83 2.92
2079 3015 0.179001 CCAGCATCAGGGCATCATCA 60.179 55.000 0.00 0.0 35.83 3.07
2080 3016 1.239347 CAGCATCAGGGCATCATCAG 58.761 55.000 0.00 0.0 35.83 2.90
2081 3017 0.110678 AGCATCAGGGCATCATCAGG 59.889 55.000 0.00 0.0 35.83 3.86
2082 3018 0.894184 GCATCAGGGCATCATCAGGG 60.894 60.000 0.00 0.0 0.00 4.45
2083 3019 0.894184 CATCAGGGCATCATCAGGGC 60.894 60.000 0.00 0.0 0.00 5.19
2084 3020 1.358051 ATCAGGGCATCATCAGGGCA 61.358 55.000 0.00 0.0 0.00 5.36
2085 3021 1.826921 CAGGGCATCATCAGGGCAC 60.827 63.158 0.00 0.0 0.00 5.01
2272 3209 6.089249 AGCTTGGGAATAAAAGACAAACAG 57.911 37.500 0.00 0.0 0.00 3.16
2314 3251 3.005684 TGCTTGTCATTGTTCCATTCACC 59.994 43.478 0.00 0.0 0.00 4.02
2315 3252 3.005684 GCTTGTCATTGTTCCATTCACCA 59.994 43.478 0.00 0.0 0.00 4.17
2364 3305 4.093556 GCAGTTCTAGGCTTACACATCAAC 59.906 45.833 0.00 0.0 0.00 3.18
2415 3356 9.096823 TCCTATGTAATCTACCGATTAATGGTT 57.903 33.333 12.78 0.0 42.17 3.67
2515 3456 2.495409 TTGCTGAACATTGCACACAG 57.505 45.000 0.00 0.0 39.05 3.66
2615 3556 6.071447 CCATCCATCACTTTAAATGTTCACCA 60.071 38.462 0.00 0.0 0.00 4.17
2767 8497 5.163713 GGCGAGCAAGAGAAAATATTGAGTT 60.164 40.000 0.00 0.0 31.48 3.01
2977 10446 9.507280 CTAGGAACACAAAGCAAATATTACATG 57.493 33.333 0.00 0.0 0.00 3.21
2990 10460 8.517878 GCAAATATTACATGTGCTTCTATGGAT 58.482 33.333 9.11 0.0 32.43 3.41
3012 10482 6.713903 GGATTCCAAGCAGATGAGAAATCATA 59.286 38.462 0.00 0.0 0.00 2.15
3027 10498 9.942850 TGAGAAATCATATTGTGTAGAAGTTCA 57.057 29.630 5.50 0.0 0.00 3.18
3124 11183 5.957842 TCAACATAACCATTGGACACTTC 57.042 39.130 10.37 0.0 0.00 3.01
3157 11216 8.840321 CAAGTGTGGGAAATAAATAGTAGGATG 58.160 37.037 0.00 0.0 0.00 3.51
3203 11262 9.868277 TGATCAAATATTGAACAAATAACCCAC 57.132 29.630 0.00 0.0 43.95 4.61
3204 11263 9.868277 GATCAAATATTGAACAAATAACCCACA 57.132 29.630 0.00 0.0 43.95 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.125963 AGTCCTTTATTACTCTACTGGGAAAGG 59.874 40.741 0.00 0.00 41.92 3.11
1 2 8.080363 AGTCCTTTATTACTCTACTGGGAAAG 57.920 38.462 0.00 0.00 0.00 2.62
90 92 7.977818 AGTGGCATATTTGTATCCTTAGATCA 58.022 34.615 0.00 0.00 33.67 2.92
169 171 6.256104 TGCATTTTGTCAAAGTTGTTCATGAG 59.744 34.615 7.69 0.00 0.00 2.90
183 185 8.429493 TTTGTAACATTTGATGCATTTTGTCA 57.571 26.923 0.00 0.00 0.00 3.58
289 296 6.876155 TGGATTAGTATTGGCTTTACACGTA 58.124 36.000 0.00 0.00 0.00 3.57
384 392 5.648092 GGTAGGAATGTTGTGCAAGTTATCT 59.352 40.000 0.00 0.00 0.00 1.98
454 545 3.738982 TGTCAAGGGTAGTGATGTTGTG 58.261 45.455 0.00 0.00 0.00 3.33
641 734 4.456566 GCGTGGGACTAAATTTTTGTCCTA 59.543 41.667 29.26 24.69 46.76 2.94
648 741 2.890945 AGCTTGCGTGGGACTAAATTTT 59.109 40.909 0.00 0.00 0.00 1.82
661 754 5.376854 AAACAAATCTTCATAGCTTGCGT 57.623 34.783 0.00 0.00 0.00 5.24
959 1081 5.310409 TGCAGGCCTTTTTATAGCTATCT 57.690 39.130 10.16 0.00 0.00 1.98
1188 1313 0.261696 GGGATAATGGCTGTTGGGGT 59.738 55.000 0.00 0.00 0.00 4.95
1215 1340 1.511850 GTTGGGGAAATGCTTGTTGC 58.488 50.000 0.00 0.00 43.25 4.17
1248 1418 1.063642 TGTTGTTGTGGTTGATGGGGA 60.064 47.619 0.00 0.00 0.00 4.81
1350 1640 3.342377 TGTTGTGGTTGTTGAGTCTGA 57.658 42.857 0.00 0.00 0.00 3.27
1378 1668 1.441311 GTTGTTGTGGTTGCTGGGG 59.559 57.895 0.00 0.00 0.00 4.96
1408 1698 2.028203 GGGGGAATGGTTGTTGTGATTG 60.028 50.000 0.00 0.00 0.00 2.67
1409 1699 2.256306 GGGGGAATGGTTGTTGTGATT 58.744 47.619 0.00 0.00 0.00 2.57
1410 1700 1.148867 TGGGGGAATGGTTGTTGTGAT 59.851 47.619 0.00 0.00 0.00 3.06
1411 1701 0.558220 TGGGGGAATGGTTGTTGTGA 59.442 50.000 0.00 0.00 0.00 3.58
1421 1741 2.162681 GTTGTTGAGTCTGGGGGAATG 58.837 52.381 0.00 0.00 0.00 2.67
1530 2283 1.913262 GGGCTGGGGAAAAGGTTGG 60.913 63.158 0.00 0.00 0.00 3.77
1635 2451 5.271598 AGGATATTCTTGCATGGGTTCAAA 58.728 37.500 0.00 0.00 0.00 2.69
1822 2638 1.947642 GTTGTTGCTGCTGCTGCAC 60.948 57.895 29.84 23.63 45.31 4.57
1834 2650 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1835 2651 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1836 2652 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1837 2653 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1838 2654 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1839 2655 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1840 2656 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1841 2657 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1842 2658 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1906 2842 2.005370 ACGAGAGTACCTTGACCCAA 57.995 50.000 0.00 0.00 46.88 4.12
1953 2889 1.403323 GCCTCCAATTGAGCTAGTTGC 59.597 52.381 7.12 0.00 39.98 4.17
1958 2894 1.762370 TGATCGCCTCCAATTGAGCTA 59.238 47.619 7.12 0.00 39.98 3.32
2063 2999 0.894184 CCCTGATGATGCCCTGATGC 60.894 60.000 0.00 0.00 0.00 3.91
2064 3000 0.894184 GCCCTGATGATGCCCTGATG 60.894 60.000 0.00 0.00 0.00 3.07
2065 3001 1.358051 TGCCCTGATGATGCCCTGAT 61.358 55.000 0.00 0.00 0.00 2.90
2066 3002 2.002407 TGCCCTGATGATGCCCTGA 61.002 57.895 0.00 0.00 0.00 3.86
2067 3003 1.826921 GTGCCCTGATGATGCCCTG 60.827 63.158 0.00 0.00 0.00 4.45
2068 3004 2.599597 GTGCCCTGATGATGCCCT 59.400 61.111 0.00 0.00 0.00 5.19
2069 3005 2.520260 GGTGCCCTGATGATGCCC 60.520 66.667 0.00 0.00 0.00 5.36
2070 3006 0.757935 AATGGTGCCCTGATGATGCC 60.758 55.000 0.00 0.00 0.00 4.40
2071 3007 1.117150 AAATGGTGCCCTGATGATGC 58.883 50.000 0.00 0.00 0.00 3.91
2072 3008 2.882927 CAAATGGTGCCCTGATGATG 57.117 50.000 0.00 0.00 0.00 3.07
2083 3019 1.064505 CGACTATGCTGGCAAATGGTG 59.935 52.381 0.00 0.00 0.00 4.17
2084 3020 1.382522 CGACTATGCTGGCAAATGGT 58.617 50.000 0.00 0.00 0.00 3.55
2085 3021 0.029834 GCGACTATGCTGGCAAATGG 59.970 55.000 0.00 0.00 0.00 3.16
2086 3022 0.316442 CGCGACTATGCTGGCAAATG 60.316 55.000 0.00 0.00 0.00 2.32
2087 3023 1.439353 CCGCGACTATGCTGGCAAAT 61.439 55.000 8.23 0.00 0.00 2.32
2088 3024 2.106074 CCGCGACTATGCTGGCAAA 61.106 57.895 8.23 0.00 0.00 3.68
2089 3025 2.511373 CCGCGACTATGCTGGCAA 60.511 61.111 8.23 0.00 0.00 4.52
2090 3026 4.529219 CCCGCGACTATGCTGGCA 62.529 66.667 8.23 0.00 32.35 4.92
2092 3028 2.383245 AATCCCCGCGACTATGCTGG 62.383 60.000 8.23 0.00 38.79 4.85
2093 3029 1.069765 AATCCCCGCGACTATGCTG 59.930 57.895 8.23 0.00 0.00 4.41
2094 3030 1.069765 CAATCCCCGCGACTATGCT 59.930 57.895 8.23 0.00 0.00 3.79
2165 3101 2.093500 TCGATTGGTGCATCTGCTAAGT 60.093 45.455 0.00 0.00 42.66 2.24
2272 3209 3.054878 CAATGCTGGCAAACAAGAACTC 58.945 45.455 0.00 0.00 0.00 3.01
2314 3251 9.003658 GGTTAGGGATGAACATCTAAATACATG 57.996 37.037 13.34 0.00 37.92 3.21
2315 3252 7.878127 CGGTTAGGGATGAACATCTAAATACAT 59.122 37.037 13.34 0.00 37.92 2.29
2415 3356 7.526526 CGGCCTATAAACTGGATTAATAGGTCA 60.527 40.741 0.00 0.00 35.33 4.02
2615 3556 4.250116 TGCACCAACGCAAAAATATCTT 57.750 36.364 0.00 0.00 39.45 2.40
2767 8497 1.003851 GTTTGGCGCTTGCTATCGTA 58.996 50.000 7.64 0.00 39.13 3.43
2938 10407 9.442047 CTTTGTGTTCCTAGATTGAGATAAGTT 57.558 33.333 0.00 0.00 0.00 2.66
2977 10446 3.282021 TGCTTGGAATCCATAGAAGCAC 58.718 45.455 19.22 0.00 38.31 4.40
2982 10452 4.903649 TCTCATCTGCTTGGAATCCATAGA 59.096 41.667 1.39 8.25 31.53 1.98
2990 10460 7.558807 ACAATATGATTTCTCATCTGCTTGGAA 59.441 33.333 0.00 0.00 41.29 3.53
3124 11183 5.682943 TTATTTCCCACACTTGTCTTTCG 57.317 39.130 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.