Multiple sequence alignment - TraesCS1B01G010400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G010400 chr1B 100.000 3040 0 0 1 3040 4964593 4967632 0.000000e+00 5614.0
1 TraesCS1B01G010400 chr1B 90.932 1996 117 18 407 2357 4993319 4991343 0.000000e+00 2625.0
2 TraesCS1B01G010400 chr1B 82.240 1464 154 51 409 1779 5136352 5137802 0.000000e+00 1166.0
3 TraesCS1B01G010400 chr1B 80.990 1394 160 37 1215 2548 5142145 5143493 0.000000e+00 1009.0
4 TraesCS1B01G010400 chr1B 82.102 1123 122 39 409 1464 5141341 5142451 0.000000e+00 887.0
5 TraesCS1B01G010400 chr1B 83.636 770 93 9 1810 2548 5057830 5058597 0.000000e+00 693.0
6 TraesCS1B01G010400 chr1B 83.290 772 89 16 1810 2548 5137941 5138705 0.000000e+00 675.0
7 TraesCS1B01G010400 chr1B 91.165 498 34 6 2546 3040 4844037 4844527 0.000000e+00 667.0
8 TraesCS1B01G010400 chr1B 87.676 568 59 7 1990 2548 5100398 5100963 0.000000e+00 651.0
9 TraesCS1B01G010400 chr1A 87.751 2188 167 23 407 2548 4032660 4034792 0.000000e+00 2462.0
10 TraesCS1B01G010400 chr1A 87.614 2188 170 23 407 2548 4040645 4042777 0.000000e+00 2446.0
11 TraesCS1B01G010400 chr1A 85.027 2204 209 51 409 2548 3909713 3911859 0.000000e+00 2130.0
12 TraesCS1B01G010400 chr1A 85.827 1016 88 25 409 1373 3847853 3846843 0.000000e+00 1027.0
13 TraesCS1B01G010400 chr1A 87.775 818 68 5 1762 2548 3846001 3845185 0.000000e+00 928.0
14 TraesCS1B01G010400 chr1A 92.176 409 30 2 1 409 542146442 542146036 7.310000e-161 577.0
15 TraesCS1B01G010400 chr1A 100.000 32 0 0 2939 2970 168781457 168781488 3.270000e-05 60.2
16 TraesCS1B01G010400 chr1D 92.399 1684 92 8 1388 3040 381528 379850 0.000000e+00 2368.0
17 TraesCS1B01G010400 chr1D 83.584 2260 216 63 434 2548 323561 321312 0.000000e+00 1975.0
18 TraesCS1B01G010400 chr1D 94.974 975 34 3 407 1367 382853 381880 0.000000e+00 1515.0
19 TraesCS1B01G010400 chr1D 84.903 1391 151 15 1215 2548 260446 259058 0.000000e+00 1351.0
20 TraesCS1B01G010400 chr1D 83.012 1142 107 41 409 1481 252067 250944 0.000000e+00 953.0
21 TraesCS1B01G010400 chr1D 83.758 1059 112 20 1215 2214 251261 250204 0.000000e+00 948.0
22 TraesCS1B01G010400 chr1D 81.385 1155 122 38 407 1481 261270 260129 0.000000e+00 856.0
23 TraesCS1B01G010400 chr1D 89.394 264 26 2 2286 2548 236633 236371 6.280000e-87 331.0
24 TraesCS1B01G010400 chr7D 95.134 411 18 2 1 411 540410525 540410117 0.000000e+00 647.0
25 TraesCS1B01G010400 chr2A 93.399 409 25 2 1 409 70319503 70319909 3.350000e-169 604.0
26 TraesCS1B01G010400 chr2A 92.421 409 29 2 1 409 39523316 39522910 1.570000e-162 582.0
27 TraesCS1B01G010400 chr5A 92.910 409 25 4 1 409 617231497 617231093 2.610000e-165 592.0
28 TraesCS1B01G010400 chr5A 92.665 409 28 2 1 409 37051843 37051437 3.380000e-164 588.0
29 TraesCS1B01G010400 chr6A 92.457 411 27 3 1 409 602495375 602494967 4.370000e-163 584.0
30 TraesCS1B01G010400 chr6A 92.176 409 29 2 1 409 499635380 499634975 2.630000e-160 575.0
31 TraesCS1B01G010400 chr3A 91.932 409 31 2 1 409 577586448 577586042 3.400000e-159 571.0
32 TraesCS1B01G010400 chr4D 94.000 100 6 0 2941 3040 12629883 12629784 5.250000e-33 152.0
33 TraesCS1B01G010400 chr4A 95.000 40 2 0 2939 2978 574612911 574612950 2.530000e-06 63.9
34 TraesCS1B01G010400 chr3D 93.023 43 3 0 2939 2981 279880068 279880026 2.530000e-06 63.9
35 TraesCS1B01G010400 chr5B 92.500 40 3 0 2939 2978 544622429 544622390 1.180000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G010400 chr1B 4964593 4967632 3039 False 5614.00 5614 100.0000 1 3040 1 chr1B.!!$F2 3039
1 TraesCS1B01G010400 chr1B 4991343 4993319 1976 True 2625.00 2625 90.9320 407 2357 1 chr1B.!!$R1 1950
2 TraesCS1B01G010400 chr1B 5136352 5143493 7141 False 934.25 1166 82.1555 409 2548 4 chr1B.!!$F5 2139
3 TraesCS1B01G010400 chr1B 5057830 5058597 767 False 693.00 693 83.6360 1810 2548 1 chr1B.!!$F3 738
4 TraesCS1B01G010400 chr1B 5100398 5100963 565 False 651.00 651 87.6760 1990 2548 1 chr1B.!!$F4 558
5 TraesCS1B01G010400 chr1A 4032660 4034792 2132 False 2462.00 2462 87.7510 407 2548 1 chr1A.!!$F2 2141
6 TraesCS1B01G010400 chr1A 4040645 4042777 2132 False 2446.00 2446 87.6140 407 2548 1 chr1A.!!$F3 2141
7 TraesCS1B01G010400 chr1A 3909713 3911859 2146 False 2130.00 2130 85.0270 409 2548 1 chr1A.!!$F1 2139
8 TraesCS1B01G010400 chr1A 3845185 3847853 2668 True 977.50 1027 86.8010 409 2548 2 chr1A.!!$R2 2139
9 TraesCS1B01G010400 chr1D 321312 323561 2249 True 1975.00 1975 83.5840 434 2548 1 chr1D.!!$R2 2114
10 TraesCS1B01G010400 chr1D 379850 382853 3003 True 1941.50 2368 93.6865 407 3040 2 chr1D.!!$R5 2633
11 TraesCS1B01G010400 chr1D 259058 261270 2212 True 1103.50 1351 83.1440 407 2548 2 chr1D.!!$R4 2141
12 TraesCS1B01G010400 chr1D 250204 252067 1863 True 950.50 953 83.3850 409 2214 2 chr1D.!!$R3 1805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.038310 ACTAGCTGCCCCTTTTCCAC 59.962 55.0 0.0 0.0 0.0 4.02 F
162 163 0.469892 CTGCCCCTTTTCCACCTGTT 60.470 55.0 0.0 0.0 0.0 3.16 F
889 976 0.529833 TGCCACCAAACACAACACAG 59.470 50.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1291 1434 0.263172 TTGTTGTGGTTGATGGGGGT 59.737 50.0 0.00 0.0 0.00 4.95 R
1646 2715 0.313672 GGCAATCACTTCGTGGCAAA 59.686 50.0 0.00 0.0 37.73 3.68 R
2862 8916 0.318614 CAAGGGTGTTTTTCGCGCAT 60.319 50.0 8.75 0.0 41.08 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.701895 AGGATTAATGTAATCTTCCTAACGACA 58.298 33.333 0.00 0.00 43.15 4.35
33 34 9.490379 GGATTAATGTAATCTTCCTAACGACAT 57.510 33.333 0.00 0.00 43.15 3.06
35 36 9.832445 ATTAATGTAATCTTCCTAACGACATGT 57.168 29.630 0.00 0.00 0.00 3.21
36 37 9.661563 TTAATGTAATCTTCCTAACGACATGTT 57.338 29.630 0.00 0.00 44.78 2.71
37 38 8.561738 AATGTAATCTTCCTAACGACATGTTT 57.438 30.769 0.00 0.00 42.09 2.83
38 39 7.591006 TGTAATCTTCCTAACGACATGTTTC 57.409 36.000 0.00 0.00 42.09 2.78
39 40 7.156000 TGTAATCTTCCTAACGACATGTTTCA 58.844 34.615 0.00 0.00 42.09 2.69
40 41 7.822334 TGTAATCTTCCTAACGACATGTTTCAT 59.178 33.333 0.00 0.00 42.09 2.57
41 42 7.687941 AATCTTCCTAACGACATGTTTCATT 57.312 32.000 0.00 0.00 42.09 2.57
42 43 7.687941 ATCTTCCTAACGACATGTTTCATTT 57.312 32.000 0.00 0.00 42.09 2.32
43 44 7.504924 TCTTCCTAACGACATGTTTCATTTT 57.495 32.000 0.00 0.00 42.09 1.82
44 45 7.581476 TCTTCCTAACGACATGTTTCATTTTC 58.419 34.615 0.00 0.00 42.09 2.29
45 46 6.249035 TCCTAACGACATGTTTCATTTTCC 57.751 37.500 0.00 0.00 42.09 3.13
46 47 5.182380 TCCTAACGACATGTTTCATTTTCCC 59.818 40.000 0.00 0.00 42.09 3.97
47 48 5.183140 CCTAACGACATGTTTCATTTTCCCT 59.817 40.000 0.00 0.00 42.09 4.20
48 49 6.373216 CCTAACGACATGTTTCATTTTCCCTA 59.627 38.462 0.00 0.00 42.09 3.53
49 50 6.834168 AACGACATGTTTCATTTTCCCTAT 57.166 33.333 0.00 0.00 37.59 2.57
50 51 6.194796 ACGACATGTTTCATTTTCCCTATG 57.805 37.500 0.00 0.00 0.00 2.23
51 52 5.710099 ACGACATGTTTCATTTTCCCTATGT 59.290 36.000 0.00 0.00 0.00 2.29
52 53 6.882140 ACGACATGTTTCATTTTCCCTATGTA 59.118 34.615 0.00 0.00 0.00 2.29
53 54 7.392113 ACGACATGTTTCATTTTCCCTATGTAA 59.608 33.333 0.00 0.00 0.00 2.41
54 55 8.405531 CGACATGTTTCATTTTCCCTATGTAAT 58.594 33.333 0.00 0.00 0.00 1.89
79 80 5.499004 TTTTGTTCTGATGCCCTACTACT 57.501 39.130 0.00 0.00 0.00 2.57
80 81 4.471904 TTGTTCTGATGCCCTACTACTG 57.528 45.455 0.00 0.00 0.00 2.74
81 82 3.441101 TGTTCTGATGCCCTACTACTGT 58.559 45.455 0.00 0.00 0.00 3.55
82 83 3.838317 TGTTCTGATGCCCTACTACTGTT 59.162 43.478 0.00 0.00 0.00 3.16
83 84 4.286032 TGTTCTGATGCCCTACTACTGTTT 59.714 41.667 0.00 0.00 0.00 2.83
84 85 5.221843 TGTTCTGATGCCCTACTACTGTTTT 60.222 40.000 0.00 0.00 0.00 2.43
85 86 6.014070 TGTTCTGATGCCCTACTACTGTTTTA 60.014 38.462 0.00 0.00 0.00 1.52
86 87 6.808321 TCTGATGCCCTACTACTGTTTTAT 57.192 37.500 0.00 0.00 0.00 1.40
87 88 7.195374 TCTGATGCCCTACTACTGTTTTATT 57.805 36.000 0.00 0.00 0.00 1.40
88 89 7.047891 TCTGATGCCCTACTACTGTTTTATTG 58.952 38.462 0.00 0.00 0.00 1.90
89 90 6.953101 TGATGCCCTACTACTGTTTTATTGA 58.047 36.000 0.00 0.00 0.00 2.57
90 91 6.821665 TGATGCCCTACTACTGTTTTATTGAC 59.178 38.462 0.00 0.00 0.00 3.18
91 92 6.368779 TGCCCTACTACTGTTTTATTGACT 57.631 37.500 0.00 0.00 0.00 3.41
92 93 6.170506 TGCCCTACTACTGTTTTATTGACTG 58.829 40.000 0.00 0.00 0.00 3.51
93 94 5.064834 GCCCTACTACTGTTTTATTGACTGC 59.935 44.000 0.00 0.00 0.00 4.40
94 95 6.170506 CCCTACTACTGTTTTATTGACTGCA 58.829 40.000 0.00 0.00 0.00 4.41
95 96 6.313905 CCCTACTACTGTTTTATTGACTGCAG 59.686 42.308 13.48 13.48 0.00 4.41
96 97 6.313905 CCTACTACTGTTTTATTGACTGCAGG 59.686 42.308 19.93 0.00 0.00 4.85
97 98 3.923017 ACTGTTTTATTGACTGCAGGC 57.077 42.857 19.93 17.40 0.00 4.85
98 99 3.221771 ACTGTTTTATTGACTGCAGGCA 58.778 40.909 21.20 21.20 0.00 4.75
99 100 3.828451 ACTGTTTTATTGACTGCAGGCAT 59.172 39.130 26.07 15.96 0.00 4.40
100 101 4.281688 ACTGTTTTATTGACTGCAGGCATT 59.718 37.500 26.07 22.67 0.00 3.56
101 102 4.808558 TGTTTTATTGACTGCAGGCATTC 58.191 39.130 26.07 9.29 0.00 2.67
102 103 4.523943 TGTTTTATTGACTGCAGGCATTCT 59.476 37.500 26.07 13.93 0.00 2.40
103 104 5.709631 TGTTTTATTGACTGCAGGCATTCTA 59.290 36.000 26.07 8.99 0.00 2.10
104 105 6.377996 TGTTTTATTGACTGCAGGCATTCTAT 59.622 34.615 26.07 16.58 0.00 1.98
105 106 7.093814 TGTTTTATTGACTGCAGGCATTCTATT 60.094 33.333 26.07 6.96 0.00 1.73
106 107 7.408756 TTTATTGACTGCAGGCATTCTATTT 57.591 32.000 26.07 5.15 0.00 1.40
107 108 5.927281 ATTGACTGCAGGCATTCTATTTT 57.073 34.783 26.07 0.00 0.00 1.82
108 109 4.707030 TGACTGCAGGCATTCTATTTTG 57.293 40.909 21.20 0.00 0.00 2.44
109 110 4.081406 TGACTGCAGGCATTCTATTTTGT 58.919 39.130 21.20 0.00 0.00 2.83
110 111 5.252547 TGACTGCAGGCATTCTATTTTGTA 58.747 37.500 21.20 0.00 0.00 2.41
111 112 5.887598 TGACTGCAGGCATTCTATTTTGTAT 59.112 36.000 21.20 0.00 0.00 2.29
112 113 7.053498 TGACTGCAGGCATTCTATTTTGTATA 58.947 34.615 21.20 0.00 0.00 1.47
113 114 7.227314 TGACTGCAGGCATTCTATTTTGTATAG 59.773 37.037 21.20 0.00 0.00 1.31
114 115 7.056635 ACTGCAGGCATTCTATTTTGTATAGT 58.943 34.615 19.93 0.00 0.00 2.12
115 116 8.210946 ACTGCAGGCATTCTATTTTGTATAGTA 58.789 33.333 19.93 0.00 0.00 1.82
116 117 9.224267 CTGCAGGCATTCTATTTTGTATAGTAT 57.776 33.333 5.57 0.00 0.00 2.12
117 118 9.002600 TGCAGGCATTCTATTTTGTATAGTATG 57.997 33.333 0.00 0.00 34.54 2.39
118 119 9.219603 GCAGGCATTCTATTTTGTATAGTATGA 57.780 33.333 12.64 0.00 33.79 2.15
136 137 9.739276 ATAGTATGATTTTGTTTGTTGGAGAGA 57.261 29.630 0.00 0.00 0.00 3.10
137 138 8.641498 AGTATGATTTTGTTTGTTGGAGAGAT 57.359 30.769 0.00 0.00 0.00 2.75
138 139 9.739276 AGTATGATTTTGTTTGTTGGAGAGATA 57.261 29.630 0.00 0.00 0.00 1.98
139 140 9.774742 GTATGATTTTGTTTGTTGGAGAGATAC 57.225 33.333 0.00 0.00 0.00 2.24
140 141 8.641498 ATGATTTTGTTTGTTGGAGAGATACT 57.359 30.769 0.00 0.00 0.00 2.12
141 142 9.739276 ATGATTTTGTTTGTTGGAGAGATACTA 57.261 29.630 0.00 0.00 0.00 1.82
142 143 9.219603 TGATTTTGTTTGTTGGAGAGATACTAG 57.780 33.333 0.00 0.00 0.00 2.57
143 144 7.435068 TTTTGTTTGTTGGAGAGATACTAGC 57.565 36.000 0.00 0.00 0.00 3.42
144 145 6.360370 TTGTTTGTTGGAGAGATACTAGCT 57.640 37.500 0.00 0.00 0.00 3.32
145 146 5.724328 TGTTTGTTGGAGAGATACTAGCTG 58.276 41.667 0.00 0.00 0.00 4.24
146 147 4.392921 TTGTTGGAGAGATACTAGCTGC 57.607 45.455 0.00 0.00 0.00 5.25
147 148 2.695666 TGTTGGAGAGATACTAGCTGCC 59.304 50.000 0.00 0.00 0.00 4.85
148 149 2.002505 TGGAGAGATACTAGCTGCCC 57.997 55.000 0.00 0.00 0.00 5.36
149 150 1.262417 GGAGAGATACTAGCTGCCCC 58.738 60.000 0.00 0.00 0.00 5.80
150 151 1.203125 GGAGAGATACTAGCTGCCCCT 60.203 57.143 0.00 0.00 0.00 4.79
151 152 2.604139 GAGAGATACTAGCTGCCCCTT 58.396 52.381 0.00 0.00 0.00 3.95
152 153 2.969262 GAGAGATACTAGCTGCCCCTTT 59.031 50.000 0.00 0.00 0.00 3.11
153 154 3.388913 AGAGATACTAGCTGCCCCTTTT 58.611 45.455 0.00 0.00 0.00 2.27
154 155 3.389656 AGAGATACTAGCTGCCCCTTTTC 59.610 47.826 0.00 0.00 0.00 2.29
155 156 2.439880 AGATACTAGCTGCCCCTTTTCC 59.560 50.000 0.00 0.00 0.00 3.13
156 157 1.663911 TACTAGCTGCCCCTTTTCCA 58.336 50.000 0.00 0.00 0.00 3.53
157 158 0.038310 ACTAGCTGCCCCTTTTCCAC 59.962 55.000 0.00 0.00 0.00 4.02
158 159 0.681243 CTAGCTGCCCCTTTTCCACC 60.681 60.000 0.00 0.00 0.00 4.61
159 160 1.140134 TAGCTGCCCCTTTTCCACCT 61.140 55.000 0.00 0.00 0.00 4.00
160 161 2.278330 GCTGCCCCTTTTCCACCTG 61.278 63.158 0.00 0.00 0.00 4.00
161 162 1.153756 CTGCCCCTTTTCCACCTGT 59.846 57.895 0.00 0.00 0.00 4.00
162 163 0.469892 CTGCCCCTTTTCCACCTGTT 60.470 55.000 0.00 0.00 0.00 3.16
163 164 0.854218 TGCCCCTTTTCCACCTGTTA 59.146 50.000 0.00 0.00 0.00 2.41
164 165 1.203001 TGCCCCTTTTCCACCTGTTAG 60.203 52.381 0.00 0.00 0.00 2.34
165 166 1.203013 GCCCCTTTTCCACCTGTTAGT 60.203 52.381 0.00 0.00 0.00 2.24
166 167 2.040679 GCCCCTTTTCCACCTGTTAGTA 59.959 50.000 0.00 0.00 0.00 1.82
167 168 3.499021 GCCCCTTTTCCACCTGTTAGTAA 60.499 47.826 0.00 0.00 0.00 2.24
168 169 4.332828 CCCCTTTTCCACCTGTTAGTAAG 58.667 47.826 0.00 0.00 0.00 2.34
169 170 4.202535 CCCCTTTTCCACCTGTTAGTAAGT 60.203 45.833 0.00 0.00 0.00 2.24
170 171 5.382616 CCCTTTTCCACCTGTTAGTAAGTT 58.617 41.667 0.00 0.00 0.00 2.66
171 172 5.831525 CCCTTTTCCACCTGTTAGTAAGTTT 59.168 40.000 0.00 0.00 0.00 2.66
172 173 6.322969 CCCTTTTCCACCTGTTAGTAAGTTTT 59.677 38.462 0.00 0.00 0.00 2.43
173 174 7.200455 CCTTTTCCACCTGTTAGTAAGTTTTG 58.800 38.462 0.00 0.00 0.00 2.44
174 175 7.147966 CCTTTTCCACCTGTTAGTAAGTTTTGT 60.148 37.037 0.00 0.00 0.00 2.83
175 176 8.804912 TTTTCCACCTGTTAGTAAGTTTTGTA 57.195 30.769 0.00 0.00 0.00 2.41
176 177 8.441312 TTTCCACCTGTTAGTAAGTTTTGTAG 57.559 34.615 0.00 0.00 0.00 2.74
177 178 5.993441 TCCACCTGTTAGTAAGTTTTGTAGC 59.007 40.000 0.00 0.00 0.00 3.58
178 179 5.180680 CCACCTGTTAGTAAGTTTTGTAGCC 59.819 44.000 0.00 0.00 0.00 3.93
179 180 4.992951 ACCTGTTAGTAAGTTTTGTAGCCG 59.007 41.667 0.00 0.00 0.00 5.52
180 181 5.221501 ACCTGTTAGTAAGTTTTGTAGCCGA 60.222 40.000 0.00 0.00 0.00 5.54
181 182 5.119743 CCTGTTAGTAAGTTTTGTAGCCGAC 59.880 44.000 0.00 0.00 0.00 4.79
182 183 5.846203 TGTTAGTAAGTTTTGTAGCCGACT 58.154 37.500 0.00 0.00 0.00 4.18
183 184 6.282930 TGTTAGTAAGTTTTGTAGCCGACTT 58.717 36.000 0.00 0.00 36.42 3.01
184 185 6.421801 TGTTAGTAAGTTTTGTAGCCGACTTC 59.578 38.462 0.00 0.00 34.46 3.01
185 186 5.211174 AGTAAGTTTTGTAGCCGACTTCT 57.789 39.130 0.00 0.00 34.46 2.85
186 187 5.608449 AGTAAGTTTTGTAGCCGACTTCTT 58.392 37.500 0.00 0.00 34.46 2.52
187 188 6.752168 AGTAAGTTTTGTAGCCGACTTCTTA 58.248 36.000 0.00 0.00 34.46 2.10
188 189 7.212274 AGTAAGTTTTGTAGCCGACTTCTTAA 58.788 34.615 0.00 0.00 34.46 1.85
189 190 7.876582 AGTAAGTTTTGTAGCCGACTTCTTAAT 59.123 33.333 0.00 0.00 34.46 1.40
190 191 7.506328 AAGTTTTGTAGCCGACTTCTTAATT 57.494 32.000 0.00 0.00 0.00 1.40
191 192 6.899114 AGTTTTGTAGCCGACTTCTTAATTG 58.101 36.000 0.00 0.00 0.00 2.32
192 193 6.708949 AGTTTTGTAGCCGACTTCTTAATTGA 59.291 34.615 0.00 0.00 0.00 2.57
193 194 7.390718 AGTTTTGTAGCCGACTTCTTAATTGAT 59.609 33.333 0.00 0.00 0.00 2.57
194 195 8.662141 GTTTTGTAGCCGACTTCTTAATTGATA 58.338 33.333 0.00 0.00 0.00 2.15
195 196 8.958119 TTTGTAGCCGACTTCTTAATTGATAT 57.042 30.769 0.00 0.00 0.00 1.63
196 197 8.958119 TTGTAGCCGACTTCTTAATTGATATT 57.042 30.769 0.00 0.00 0.00 1.28
221 222 3.733443 ACGTTTTAAGGTAGACGTGGT 57.267 42.857 0.00 0.00 45.75 4.16
222 223 4.846779 ACGTTTTAAGGTAGACGTGGTA 57.153 40.909 0.00 0.00 45.75 3.25
223 224 5.391312 ACGTTTTAAGGTAGACGTGGTAT 57.609 39.130 0.00 0.00 45.75 2.73
224 225 5.783111 ACGTTTTAAGGTAGACGTGGTATT 58.217 37.500 0.00 0.00 45.75 1.89
225 226 6.223120 ACGTTTTAAGGTAGACGTGGTATTT 58.777 36.000 0.00 0.00 45.75 1.40
226 227 6.705825 ACGTTTTAAGGTAGACGTGGTATTTT 59.294 34.615 0.00 0.00 45.75 1.82
227 228 7.095649 ACGTTTTAAGGTAGACGTGGTATTTTC 60.096 37.037 0.00 0.00 45.75 2.29
228 229 7.095691 CGTTTTAAGGTAGACGTGGTATTTTCA 60.096 37.037 0.00 0.00 0.00 2.69
229 230 7.894376 TTTAAGGTAGACGTGGTATTTTCAG 57.106 36.000 0.00 0.00 0.00 3.02
230 231 5.479124 AAGGTAGACGTGGTATTTTCAGT 57.521 39.130 0.00 0.00 0.00 3.41
231 232 5.479124 AGGTAGACGTGGTATTTTCAGTT 57.521 39.130 0.00 0.00 0.00 3.16
232 233 6.594788 AGGTAGACGTGGTATTTTCAGTTA 57.405 37.500 0.00 0.00 0.00 2.24
233 234 6.628185 AGGTAGACGTGGTATTTTCAGTTAG 58.372 40.000 0.00 0.00 0.00 2.34
234 235 6.435277 AGGTAGACGTGGTATTTTCAGTTAGA 59.565 38.462 0.00 0.00 0.00 2.10
235 236 6.529477 GGTAGACGTGGTATTTTCAGTTAGAC 59.471 42.308 0.00 0.00 0.00 2.59
236 237 6.342338 AGACGTGGTATTTTCAGTTAGACT 57.658 37.500 0.00 0.00 0.00 3.24
257 258 7.920738 AGACTGATTTCTTGTATTTTATCCGC 58.079 34.615 0.00 0.00 0.00 5.54
258 259 7.770897 AGACTGATTTCTTGTATTTTATCCGCT 59.229 33.333 0.00 0.00 0.00 5.52
259 260 7.697691 ACTGATTTCTTGTATTTTATCCGCTG 58.302 34.615 0.00 0.00 0.00 5.18
260 261 7.336931 ACTGATTTCTTGTATTTTATCCGCTGT 59.663 33.333 0.00 0.00 0.00 4.40
261 262 8.050778 TGATTTCTTGTATTTTATCCGCTGTT 57.949 30.769 0.00 0.00 0.00 3.16
262 263 9.168451 TGATTTCTTGTATTTTATCCGCTGTTA 57.832 29.630 0.00 0.00 0.00 2.41
266 267 8.827177 TCTTGTATTTTATCCGCTGTTATAGG 57.173 34.615 0.00 0.00 0.00 2.57
267 268 8.644216 TCTTGTATTTTATCCGCTGTTATAGGA 58.356 33.333 0.00 0.00 38.56 2.94
268 269 8.827177 TTGTATTTTATCCGCTGTTATAGGAG 57.173 34.615 0.00 0.00 37.49 3.69
269 270 7.959175 TGTATTTTATCCGCTGTTATAGGAGT 58.041 34.615 0.00 0.00 37.49 3.85
270 271 8.426489 TGTATTTTATCCGCTGTTATAGGAGTT 58.574 33.333 0.00 0.00 37.49 3.01
271 272 9.269453 GTATTTTATCCGCTGTTATAGGAGTTT 57.731 33.333 0.00 0.00 37.49 2.66
272 273 7.548196 TTTTATCCGCTGTTATAGGAGTTTG 57.452 36.000 0.00 0.00 37.49 2.93
273 274 4.755266 ATCCGCTGTTATAGGAGTTTGT 57.245 40.909 0.00 0.00 37.49 2.83
274 275 5.864418 ATCCGCTGTTATAGGAGTTTGTA 57.136 39.130 0.00 0.00 37.49 2.41
275 276 5.664294 TCCGCTGTTATAGGAGTTTGTAA 57.336 39.130 0.00 0.00 0.00 2.41
276 277 6.040209 TCCGCTGTTATAGGAGTTTGTAAA 57.960 37.500 0.00 0.00 0.00 2.01
277 278 5.870978 TCCGCTGTTATAGGAGTTTGTAAAC 59.129 40.000 0.00 0.00 39.17 2.01
278 279 5.064325 CCGCTGTTATAGGAGTTTGTAAACC 59.936 44.000 4.00 0.00 39.71 3.27
279 280 5.873164 CGCTGTTATAGGAGTTTGTAAACCT 59.127 40.000 4.00 0.00 39.71 3.50
280 281 6.035758 CGCTGTTATAGGAGTTTGTAAACCTC 59.964 42.308 4.00 2.28 39.71 3.85
281 282 7.104290 GCTGTTATAGGAGTTTGTAAACCTCT 58.896 38.462 4.00 5.06 39.71 3.69
282 283 7.064728 GCTGTTATAGGAGTTTGTAAACCTCTG 59.935 40.741 4.00 0.00 39.71 3.35
283 284 7.970102 TGTTATAGGAGTTTGTAAACCTCTGT 58.030 34.615 4.00 3.88 39.71 3.41
284 285 8.434392 TGTTATAGGAGTTTGTAAACCTCTGTT 58.566 33.333 4.00 0.00 39.71 3.16
285 286 9.281371 GTTATAGGAGTTTGTAAACCTCTGTTT 57.719 33.333 4.00 0.00 46.22 2.83
286 287 9.856162 TTATAGGAGTTTGTAAACCTCTGTTTT 57.144 29.630 4.00 0.00 41.92 2.43
287 288 8.762481 ATAGGAGTTTGTAAACCTCTGTTTTT 57.238 30.769 4.00 0.00 41.92 1.94
318 319 8.730970 AAAAATTAAAATGTGCATGCATTGTC 57.269 26.923 25.64 11.56 38.87 3.18
319 320 7.436430 AAATTAAAATGTGCATGCATTGTCA 57.564 28.000 25.64 17.37 38.87 3.58
320 321 7.436430 AATTAAAATGTGCATGCATTGTCAA 57.564 28.000 25.64 13.93 38.87 3.18
321 322 6.856135 TTAAAATGTGCATGCATTGTCAAA 57.144 29.167 25.64 12.00 38.87 2.69
322 323 5.351233 AAAATGTGCATGCATTGTCAAAG 57.649 34.783 25.64 0.00 38.87 2.77
323 324 3.671008 ATGTGCATGCATTGTCAAAGT 57.329 38.095 25.64 0.00 0.00 2.66
324 325 3.455990 TGTGCATGCATTGTCAAAGTT 57.544 38.095 25.64 0.00 0.00 2.66
325 326 3.794717 TGTGCATGCATTGTCAAAGTTT 58.205 36.364 25.64 0.00 0.00 2.66
326 327 3.556365 TGTGCATGCATTGTCAAAGTTTG 59.444 39.130 25.64 9.44 0.00 2.93
327 328 3.556775 GTGCATGCATTGTCAAAGTTTGT 59.443 39.130 25.64 0.00 0.00 2.83
328 329 3.556365 TGCATGCATTGTCAAAGTTTGTG 59.444 39.130 18.46 7.43 0.00 3.33
329 330 3.803231 GCATGCATTGTCAAAGTTTGTGA 59.197 39.130 14.21 3.57 0.00 3.58
330 331 4.270566 GCATGCATTGTCAAAGTTTGTGAA 59.729 37.500 14.21 9.44 0.00 3.18
331 332 5.557514 GCATGCATTGTCAAAGTTTGTGAAG 60.558 40.000 14.21 4.86 0.00 3.02
332 333 5.070770 TGCATTGTCAAAGTTTGTGAAGT 57.929 34.783 15.08 0.00 0.00 3.01
333 334 6.201226 TGCATTGTCAAAGTTTGTGAAGTA 57.799 33.333 15.08 1.06 0.00 2.24
334 335 6.264832 TGCATTGTCAAAGTTTGTGAAGTAG 58.735 36.000 15.08 2.99 0.00 2.57
335 336 6.094742 TGCATTGTCAAAGTTTGTGAAGTAGA 59.905 34.615 15.08 0.00 0.00 2.59
336 337 6.972328 GCATTGTCAAAGTTTGTGAAGTAGAA 59.028 34.615 15.08 0.70 0.00 2.10
337 338 7.649306 GCATTGTCAAAGTTTGTGAAGTAGAAT 59.351 33.333 15.08 2.95 0.00 2.40
338 339 9.520204 CATTGTCAAAGTTTGTGAAGTAGAATT 57.480 29.630 15.08 0.00 0.00 2.17
369 370 8.055279 CCTTTTGGTTATTGATCACTGTATGT 57.945 34.615 0.00 0.00 34.07 2.29
370 371 9.173021 CCTTTTGGTTATTGATCACTGTATGTA 57.827 33.333 0.00 0.00 34.07 2.29
382 383 8.507249 TGATCACTGTATGTATCTTAGATGTCG 58.493 37.037 4.78 0.00 0.00 4.35
383 384 6.669278 TCACTGTATGTATCTTAGATGTCGC 58.331 40.000 4.78 0.00 0.00 5.19
384 385 5.565638 CACTGTATGTATCTTAGATGTCGCG 59.434 44.000 4.78 0.00 0.00 5.87
385 386 5.238868 ACTGTATGTATCTTAGATGTCGCGT 59.761 40.000 5.77 0.00 0.00 6.01
386 387 6.426025 ACTGTATGTATCTTAGATGTCGCGTA 59.574 38.462 5.77 0.00 0.00 4.42
387 388 6.828672 TGTATGTATCTTAGATGTCGCGTAG 58.171 40.000 5.77 0.00 0.00 3.51
616 651 9.971922 AAAAGAATAAAAGTCCAGAATGAACAG 57.028 29.630 0.00 0.00 39.69 3.16
654 692 7.977789 TCTATCTTTAACAACATGCACAAGA 57.022 32.000 0.00 0.00 0.00 3.02
663 701 7.410800 AACAACATGCACAAGAATACAAATG 57.589 32.000 0.00 0.00 0.00 2.32
671 709 5.648092 GCACAAGAATACAAATGTAGTCCCT 59.352 40.000 15.17 3.25 44.09 4.20
672 710 6.151144 GCACAAGAATACAAATGTAGTCCCTT 59.849 38.462 15.17 4.20 44.09 3.95
707 745 6.909550 AGATTTGGTTTATGCCTAACAACA 57.090 33.333 0.00 0.00 0.00 3.33
739 806 6.894103 ACTTAGATCCAAAAGGAATGCAATCT 59.106 34.615 1.01 0.00 0.00 2.40
812 899 5.864628 AAAGTTTTCGCCACTCTTAGATC 57.135 39.130 0.00 0.00 0.00 2.75
889 976 0.529833 TGCCACCAAACACAACACAG 59.470 50.000 0.00 0.00 0.00 3.66
1051 1143 7.629222 GCACAAGCATCAAATCCAAGTAAGTAT 60.629 37.037 0.00 0.00 41.58 2.12
1219 1362 1.723608 TTCTGCCAGCAACCACAACG 61.724 55.000 0.00 0.00 0.00 4.10
1223 1366 1.724582 GCCAGCAACCACAACGAACT 61.725 55.000 0.00 0.00 0.00 3.01
1224 1367 1.588674 CCAGCAACCACAACGAACTA 58.411 50.000 0.00 0.00 0.00 2.24
1238 1381 1.214424 CGAACTATTCCCCAACCCCAT 59.786 52.381 0.00 0.00 0.00 4.00
1249 1392 2.255406 CCAACCCCATCAAACATTCCA 58.745 47.619 0.00 0.00 0.00 3.53
1266 1409 2.739943 TCCACCATCAACCACAACAAA 58.260 42.857 0.00 0.00 0.00 2.83
1280 1423 2.171659 ACAACAAACATTTCCCCAACCC 59.828 45.455 0.00 0.00 0.00 4.11
1291 1434 1.503784 TCCCCAACCCCAACAAACATA 59.496 47.619 0.00 0.00 0.00 2.29
1402 2407 2.510613 ACTACCATTTCCCCAACAACG 58.489 47.619 0.00 0.00 0.00 4.10
1427 2432 1.867595 AACCATTCCCCCAGCCTCAG 61.868 60.000 0.00 0.00 0.00 3.35
1545 2614 1.439644 CCCCAACAACAACAACCGG 59.560 57.895 0.00 0.00 0.00 5.28
1546 2615 1.227118 CCCAACAACAACAACCGGC 60.227 57.895 0.00 0.00 0.00 6.13
1646 2715 5.812642 GGTGTCATCTCTCGTGTCAATAATT 59.187 40.000 0.00 0.00 0.00 1.40
1763 2832 1.269361 GCGCATTCCATCATCATGCAA 60.269 47.619 0.30 0.00 43.00 4.08
1786 2990 0.869880 GAACAACAACAAGGCGTGCC 60.870 55.000 1.67 1.67 0.00 5.01
1951 3179 3.210227 CCATCAACGTACCATATGCCAA 58.790 45.455 0.00 0.00 0.00 4.52
1960 3188 4.557895 CGTACCATATGCCAACATAGACGA 60.558 45.833 0.00 0.00 41.97 4.20
1961 3189 4.623932 ACCATATGCCAACATAGACGAT 57.376 40.909 0.00 0.00 41.97 3.73
2265 3524 8.848474 ATTAATGGTCGACCTATTAATCCAAG 57.152 34.615 32.41 0.00 36.32 3.61
2389 3657 8.603304 TCTCTAGAAGTAAAAGGGCATTTTAGT 58.397 33.333 16.49 16.53 45.06 2.24
2617 8671 1.896660 TGAGCACCGGAAAGCAACC 60.897 57.895 9.46 3.69 0.00 3.77
2624 8678 3.431725 GGAAAGCAACCGGAGCCG 61.432 66.667 9.46 1.06 39.44 5.52
2635 8689 2.098293 CGGAGCCGGAAAATGAAGG 58.902 57.895 5.05 0.00 35.56 3.46
2637 8691 1.545841 GGAGCCGGAAAATGAAGGTT 58.454 50.000 5.05 0.00 0.00 3.50
2648 8702 6.442112 GGAAAATGAAGGTTTCACAAGAGAG 58.558 40.000 0.00 0.00 43.48 3.20
2666 8720 5.105752 AGAGAGCAACACTTTTATAGAGCG 58.894 41.667 0.00 0.00 0.00 5.03
2670 8724 4.081642 AGCAACACTTTTATAGAGCGAGGA 60.082 41.667 0.00 0.00 0.00 3.71
2727 8781 2.042433 AGCAAAATAGCCCCAACTACCA 59.958 45.455 0.00 0.00 34.23 3.25
2752 8806 2.121918 GCCCTAGGGGTGGCCTAT 60.122 66.667 29.57 0.00 46.51 2.57
2753 8807 1.160145 GCCCTAGGGGTGGCCTATA 59.840 63.158 29.57 0.00 46.51 1.31
2754 8808 0.253207 GCCCTAGGGGTGGCCTATAT 60.253 60.000 29.57 0.00 46.51 0.86
2812 8866 1.371183 GCATGGCCTAGGATGCGTA 59.629 57.895 14.75 0.00 35.95 4.42
2889 8944 4.026062 GCGAAAAACACCCTTGATTTTCAC 60.026 41.667 15.86 6.64 46.91 3.18
2892 8947 6.975772 CGAAAAACACCCTTGATTTTCACTTA 59.024 34.615 15.86 0.00 46.91 2.24
2900 8955 8.981647 CACCCTTGATTTTCACTTATTTTTCTG 58.018 33.333 0.00 0.00 0.00 3.02
2935 8990 6.496571 ACAGAGAACGTTATTATCTTCCTCG 58.503 40.000 0.00 0.34 0.00 4.63
3012 9067 2.583593 CGCTCCTGCTAACTCGCC 60.584 66.667 0.00 0.00 36.97 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.701895 TGTCGTTAGGAAGATTACATTAATCCT 58.298 33.333 2.88 0.00 44.35 3.24
7 8 8.882415 TGTCGTTAGGAAGATTACATTAATCC 57.118 34.615 2.88 0.00 44.35 3.01
9 10 9.832445 ACATGTCGTTAGGAAGATTACATTAAT 57.168 29.630 0.00 0.00 0.00 1.40
10 11 9.661563 AACATGTCGTTAGGAAGATTACATTAA 57.338 29.630 0.00 0.00 35.52 1.40
11 12 9.661563 AAACATGTCGTTAGGAAGATTACATTA 57.338 29.630 0.00 0.00 36.59 1.90
12 13 8.561738 AAACATGTCGTTAGGAAGATTACATT 57.438 30.769 0.00 0.00 36.59 2.71
13 14 7.822334 TGAAACATGTCGTTAGGAAGATTACAT 59.178 33.333 0.00 0.00 36.59 2.29
14 15 7.156000 TGAAACATGTCGTTAGGAAGATTACA 58.844 34.615 0.00 0.00 36.59 2.41
15 16 7.591006 TGAAACATGTCGTTAGGAAGATTAC 57.409 36.000 0.00 0.00 36.59 1.89
16 17 8.786826 AATGAAACATGTCGTTAGGAAGATTA 57.213 30.769 0.00 0.00 36.59 1.75
17 18 7.687941 AATGAAACATGTCGTTAGGAAGATT 57.312 32.000 0.00 0.00 36.59 2.40
18 19 7.687941 AAATGAAACATGTCGTTAGGAAGAT 57.312 32.000 0.00 0.00 36.59 2.40
19 20 7.308348 GGAAAATGAAACATGTCGTTAGGAAGA 60.308 37.037 0.00 0.00 36.59 2.87
20 21 6.801862 GGAAAATGAAACATGTCGTTAGGAAG 59.198 38.462 0.00 0.00 36.59 3.46
21 22 6.294286 GGGAAAATGAAACATGTCGTTAGGAA 60.294 38.462 0.00 0.00 36.59 3.36
22 23 5.182380 GGGAAAATGAAACATGTCGTTAGGA 59.818 40.000 0.00 0.00 36.59 2.94
23 24 5.183140 AGGGAAAATGAAACATGTCGTTAGG 59.817 40.000 0.00 0.00 36.59 2.69
24 25 6.254281 AGGGAAAATGAAACATGTCGTTAG 57.746 37.500 0.00 0.00 36.59 2.34
25 26 7.392113 ACATAGGGAAAATGAAACATGTCGTTA 59.608 33.333 0.00 0.00 36.59 3.18
26 27 6.208599 ACATAGGGAAAATGAAACATGTCGTT 59.791 34.615 0.00 0.00 40.50 3.85
27 28 5.710099 ACATAGGGAAAATGAAACATGTCGT 59.290 36.000 0.00 0.00 0.00 4.34
28 29 6.194796 ACATAGGGAAAATGAAACATGTCG 57.805 37.500 0.00 0.00 0.00 4.35
56 57 5.705441 CAGTAGTAGGGCATCAGAACAAAAA 59.295 40.000 0.00 0.00 0.00 1.94
57 58 5.221843 ACAGTAGTAGGGCATCAGAACAAAA 60.222 40.000 0.00 0.00 0.00 2.44
58 59 4.286032 ACAGTAGTAGGGCATCAGAACAAA 59.714 41.667 0.00 0.00 0.00 2.83
59 60 3.838317 ACAGTAGTAGGGCATCAGAACAA 59.162 43.478 0.00 0.00 0.00 2.83
60 61 3.441101 ACAGTAGTAGGGCATCAGAACA 58.559 45.455 0.00 0.00 0.00 3.18
61 62 4.473477 AACAGTAGTAGGGCATCAGAAC 57.527 45.455 0.00 0.00 0.00 3.01
62 63 5.499004 AAAACAGTAGTAGGGCATCAGAA 57.501 39.130 0.00 0.00 0.00 3.02
63 64 6.808321 ATAAAACAGTAGTAGGGCATCAGA 57.192 37.500 0.00 0.00 0.00 3.27
64 65 7.011482 GTCAATAAAACAGTAGTAGGGCATCAG 59.989 40.741 0.00 0.00 0.00 2.90
65 66 6.821665 GTCAATAAAACAGTAGTAGGGCATCA 59.178 38.462 0.00 0.00 0.00 3.07
66 67 7.011482 CAGTCAATAAAACAGTAGTAGGGCATC 59.989 40.741 0.00 0.00 0.00 3.91
67 68 6.823689 CAGTCAATAAAACAGTAGTAGGGCAT 59.176 38.462 0.00 0.00 0.00 4.40
68 69 6.170506 CAGTCAATAAAACAGTAGTAGGGCA 58.829 40.000 0.00 0.00 0.00 5.36
69 70 5.064834 GCAGTCAATAAAACAGTAGTAGGGC 59.935 44.000 0.00 0.00 0.00 5.19
70 71 6.170506 TGCAGTCAATAAAACAGTAGTAGGG 58.829 40.000 0.00 0.00 0.00 3.53
71 72 6.313905 CCTGCAGTCAATAAAACAGTAGTAGG 59.686 42.308 13.81 0.00 0.00 3.18
72 73 6.183360 GCCTGCAGTCAATAAAACAGTAGTAG 60.183 42.308 13.81 0.00 0.00 2.57
73 74 5.642063 GCCTGCAGTCAATAAAACAGTAGTA 59.358 40.000 13.81 0.00 0.00 1.82
74 75 4.455877 GCCTGCAGTCAATAAAACAGTAGT 59.544 41.667 13.81 0.00 0.00 2.73
75 76 4.455533 TGCCTGCAGTCAATAAAACAGTAG 59.544 41.667 13.81 0.00 0.00 2.57
76 77 4.393834 TGCCTGCAGTCAATAAAACAGTA 58.606 39.130 13.81 0.00 0.00 2.74
77 78 3.221771 TGCCTGCAGTCAATAAAACAGT 58.778 40.909 13.81 0.00 0.00 3.55
78 79 3.921119 TGCCTGCAGTCAATAAAACAG 57.079 42.857 13.81 0.00 0.00 3.16
79 80 4.523943 AGAATGCCTGCAGTCAATAAAACA 59.476 37.500 20.06 0.00 42.66 2.83
80 81 5.064441 AGAATGCCTGCAGTCAATAAAAC 57.936 39.130 20.06 0.00 42.66 2.43
81 82 7.408756 AATAGAATGCCTGCAGTCAATAAAA 57.591 32.000 20.06 1.01 42.66 1.52
82 83 7.408756 AAATAGAATGCCTGCAGTCAATAAA 57.591 32.000 20.06 2.56 42.66 1.40
83 84 7.093814 ACAAAATAGAATGCCTGCAGTCAATAA 60.094 33.333 20.06 4.75 42.66 1.40
84 85 6.377996 ACAAAATAGAATGCCTGCAGTCAATA 59.622 34.615 20.06 6.67 42.66 1.90
85 86 5.186409 ACAAAATAGAATGCCTGCAGTCAAT 59.814 36.000 20.06 0.00 42.66 2.57
86 87 4.523943 ACAAAATAGAATGCCTGCAGTCAA 59.476 37.500 20.06 0.00 42.66 3.18
87 88 4.081406 ACAAAATAGAATGCCTGCAGTCA 58.919 39.130 20.06 6.39 42.66 3.41
88 89 4.708726 ACAAAATAGAATGCCTGCAGTC 57.291 40.909 13.81 11.33 40.82 3.51
89 90 7.056635 ACTATACAAAATAGAATGCCTGCAGT 58.943 34.615 13.81 0.00 0.00 4.40
90 91 7.502120 ACTATACAAAATAGAATGCCTGCAG 57.498 36.000 6.78 6.78 0.00 4.41
91 92 9.002600 CATACTATACAAAATAGAATGCCTGCA 57.997 33.333 0.00 0.00 0.00 4.41
92 93 9.219603 TCATACTATACAAAATAGAATGCCTGC 57.780 33.333 0.00 0.00 0.00 4.85
110 111 9.739276 TCTCTCCAACAAACAAAATCATACTAT 57.261 29.630 0.00 0.00 0.00 2.12
111 112 9.739276 ATCTCTCCAACAAACAAAATCATACTA 57.261 29.630 0.00 0.00 0.00 1.82
112 113 8.641498 ATCTCTCCAACAAACAAAATCATACT 57.359 30.769 0.00 0.00 0.00 2.12
113 114 9.774742 GTATCTCTCCAACAAACAAAATCATAC 57.225 33.333 0.00 0.00 0.00 2.39
114 115 9.739276 AGTATCTCTCCAACAAACAAAATCATA 57.261 29.630 0.00 0.00 0.00 2.15
115 116 8.641498 AGTATCTCTCCAACAAACAAAATCAT 57.359 30.769 0.00 0.00 0.00 2.45
116 117 9.219603 CTAGTATCTCTCCAACAAACAAAATCA 57.780 33.333 0.00 0.00 0.00 2.57
117 118 8.178313 GCTAGTATCTCTCCAACAAACAAAATC 58.822 37.037 0.00 0.00 0.00 2.17
118 119 7.885399 AGCTAGTATCTCTCCAACAAACAAAAT 59.115 33.333 0.00 0.00 0.00 1.82
119 120 7.173218 CAGCTAGTATCTCTCCAACAAACAAAA 59.827 37.037 0.00 0.00 0.00 2.44
120 121 6.650807 CAGCTAGTATCTCTCCAACAAACAAA 59.349 38.462 0.00 0.00 0.00 2.83
121 122 6.166279 CAGCTAGTATCTCTCCAACAAACAA 58.834 40.000 0.00 0.00 0.00 2.83
122 123 5.724328 CAGCTAGTATCTCTCCAACAAACA 58.276 41.667 0.00 0.00 0.00 2.83
123 124 4.568760 GCAGCTAGTATCTCTCCAACAAAC 59.431 45.833 0.00 0.00 0.00 2.93
124 125 4.383118 GGCAGCTAGTATCTCTCCAACAAA 60.383 45.833 0.00 0.00 0.00 2.83
125 126 3.133003 GGCAGCTAGTATCTCTCCAACAA 59.867 47.826 0.00 0.00 0.00 2.83
126 127 2.695666 GGCAGCTAGTATCTCTCCAACA 59.304 50.000 0.00 0.00 0.00 3.33
127 128 2.036604 GGGCAGCTAGTATCTCTCCAAC 59.963 54.545 0.00 0.00 0.00 3.77
128 129 2.320781 GGGCAGCTAGTATCTCTCCAA 58.679 52.381 0.00 0.00 0.00 3.53
129 130 1.481428 GGGGCAGCTAGTATCTCTCCA 60.481 57.143 0.00 0.00 0.00 3.86
130 131 1.203125 AGGGGCAGCTAGTATCTCTCC 60.203 57.143 0.00 0.00 0.00 3.71
131 132 2.302587 AGGGGCAGCTAGTATCTCTC 57.697 55.000 0.00 0.00 0.00 3.20
132 133 2.785357 AAGGGGCAGCTAGTATCTCT 57.215 50.000 0.00 0.00 0.00 3.10
133 134 3.495276 GGAAAAGGGGCAGCTAGTATCTC 60.495 52.174 0.00 0.00 0.00 2.75
134 135 2.439880 GGAAAAGGGGCAGCTAGTATCT 59.560 50.000 0.00 0.00 0.00 1.98
135 136 2.172717 TGGAAAAGGGGCAGCTAGTATC 59.827 50.000 0.00 0.00 0.00 2.24
136 137 2.092375 GTGGAAAAGGGGCAGCTAGTAT 60.092 50.000 0.00 0.00 0.00 2.12
137 138 1.280998 GTGGAAAAGGGGCAGCTAGTA 59.719 52.381 0.00 0.00 0.00 1.82
138 139 0.038310 GTGGAAAAGGGGCAGCTAGT 59.962 55.000 0.00 0.00 0.00 2.57
139 140 0.681243 GGTGGAAAAGGGGCAGCTAG 60.681 60.000 0.00 0.00 0.00 3.42
140 141 1.140134 AGGTGGAAAAGGGGCAGCTA 61.140 55.000 0.00 0.00 0.00 3.32
141 142 2.118294 GGTGGAAAAGGGGCAGCT 59.882 61.111 0.00 0.00 0.00 4.24
142 143 2.118294 AGGTGGAAAAGGGGCAGC 59.882 61.111 0.00 0.00 0.00 5.25
143 144 0.469892 AACAGGTGGAAAAGGGGCAG 60.470 55.000 0.00 0.00 0.00 4.85
144 145 0.854218 TAACAGGTGGAAAAGGGGCA 59.146 50.000 0.00 0.00 0.00 5.36
145 146 1.203013 ACTAACAGGTGGAAAAGGGGC 60.203 52.381 0.00 0.00 0.00 5.80
146 147 2.971901 ACTAACAGGTGGAAAAGGGG 57.028 50.000 0.00 0.00 0.00 4.79
147 148 4.981812 ACTTACTAACAGGTGGAAAAGGG 58.018 43.478 0.00 0.00 0.00 3.95
148 149 6.954487 AAACTTACTAACAGGTGGAAAAGG 57.046 37.500 0.00 0.00 0.00 3.11
149 150 7.768240 ACAAAACTTACTAACAGGTGGAAAAG 58.232 34.615 0.00 0.00 0.00 2.27
150 151 7.706100 ACAAAACTTACTAACAGGTGGAAAA 57.294 32.000 0.00 0.00 0.00 2.29
151 152 7.012610 GCTACAAAACTTACTAACAGGTGGAAA 59.987 37.037 0.00 0.00 0.00 3.13
152 153 6.484308 GCTACAAAACTTACTAACAGGTGGAA 59.516 38.462 0.00 0.00 0.00 3.53
153 154 5.993441 GCTACAAAACTTACTAACAGGTGGA 59.007 40.000 0.00 0.00 0.00 4.02
154 155 5.180680 GGCTACAAAACTTACTAACAGGTGG 59.819 44.000 0.00 0.00 0.00 4.61
155 156 5.107220 CGGCTACAAAACTTACTAACAGGTG 60.107 44.000 0.00 0.00 0.00 4.00
156 157 4.992951 CGGCTACAAAACTTACTAACAGGT 59.007 41.667 0.00 0.00 0.00 4.00
157 158 5.119743 GTCGGCTACAAAACTTACTAACAGG 59.880 44.000 0.00 0.00 0.00 4.00
158 159 5.924825 AGTCGGCTACAAAACTTACTAACAG 59.075 40.000 0.00 0.00 0.00 3.16
159 160 5.846203 AGTCGGCTACAAAACTTACTAACA 58.154 37.500 0.00 0.00 0.00 2.41
160 161 6.644181 AGAAGTCGGCTACAAAACTTACTAAC 59.356 38.462 0.00 0.00 32.34 2.34
161 162 6.752168 AGAAGTCGGCTACAAAACTTACTAA 58.248 36.000 0.00 0.00 32.34 2.24
162 163 6.336842 AGAAGTCGGCTACAAAACTTACTA 57.663 37.500 0.00 0.00 32.34 1.82
163 164 5.211174 AGAAGTCGGCTACAAAACTTACT 57.789 39.130 0.00 0.00 32.34 2.24
164 165 5.919272 AAGAAGTCGGCTACAAAACTTAC 57.081 39.130 0.00 0.00 32.34 2.34
165 166 8.500773 CAATTAAGAAGTCGGCTACAAAACTTA 58.499 33.333 0.00 0.00 32.34 2.24
166 167 7.227910 TCAATTAAGAAGTCGGCTACAAAACTT 59.772 33.333 0.00 0.00 34.78 2.66
167 168 6.708949 TCAATTAAGAAGTCGGCTACAAAACT 59.291 34.615 0.00 0.00 0.00 2.66
168 169 6.894828 TCAATTAAGAAGTCGGCTACAAAAC 58.105 36.000 0.00 0.00 0.00 2.43
169 170 7.681939 ATCAATTAAGAAGTCGGCTACAAAA 57.318 32.000 0.00 0.00 0.00 2.44
170 171 8.958119 ATATCAATTAAGAAGTCGGCTACAAA 57.042 30.769 0.00 0.00 0.00 2.83
171 172 8.958119 AATATCAATTAAGAAGTCGGCTACAA 57.042 30.769 0.00 0.00 0.00 2.41
193 194 9.935682 CACGTCTACCTTAAAACGTCTATAATA 57.064 33.333 0.00 0.00 45.67 0.98
194 195 7.917505 CCACGTCTACCTTAAAACGTCTATAAT 59.082 37.037 0.00 0.00 45.67 1.28
195 196 7.094377 ACCACGTCTACCTTAAAACGTCTATAA 60.094 37.037 0.00 0.00 45.67 0.98
196 197 6.374333 ACCACGTCTACCTTAAAACGTCTATA 59.626 38.462 0.00 0.00 45.67 1.31
197 198 5.183904 ACCACGTCTACCTTAAAACGTCTAT 59.816 40.000 0.00 0.00 45.67 1.98
198 199 4.518970 ACCACGTCTACCTTAAAACGTCTA 59.481 41.667 0.00 0.00 45.67 2.59
199 200 3.319122 ACCACGTCTACCTTAAAACGTCT 59.681 43.478 0.00 0.00 45.67 4.18
200 201 3.642705 ACCACGTCTACCTTAAAACGTC 58.357 45.455 0.00 0.00 45.67 4.34
202 203 6.710692 AAATACCACGTCTACCTTAAAACG 57.289 37.500 0.00 0.00 40.77 3.60
203 204 8.086851 TGAAAATACCACGTCTACCTTAAAAC 57.913 34.615 0.00 0.00 0.00 2.43
204 205 7.933033 ACTGAAAATACCACGTCTACCTTAAAA 59.067 33.333 0.00 0.00 0.00 1.52
205 206 7.444299 ACTGAAAATACCACGTCTACCTTAAA 58.556 34.615 0.00 0.00 0.00 1.52
206 207 6.996509 ACTGAAAATACCACGTCTACCTTAA 58.003 36.000 0.00 0.00 0.00 1.85
207 208 6.594788 ACTGAAAATACCACGTCTACCTTA 57.405 37.500 0.00 0.00 0.00 2.69
208 209 5.479124 ACTGAAAATACCACGTCTACCTT 57.521 39.130 0.00 0.00 0.00 3.50
209 210 5.479124 AACTGAAAATACCACGTCTACCT 57.521 39.130 0.00 0.00 0.00 3.08
210 211 6.529477 GTCTAACTGAAAATACCACGTCTACC 59.471 42.308 0.00 0.00 0.00 3.18
211 212 7.311408 AGTCTAACTGAAAATACCACGTCTAC 58.689 38.462 0.00 0.00 0.00 2.59
212 213 7.458409 AGTCTAACTGAAAATACCACGTCTA 57.542 36.000 0.00 0.00 0.00 2.59
213 214 6.342338 AGTCTAACTGAAAATACCACGTCT 57.658 37.500 0.00 0.00 0.00 4.18
231 232 9.042008 GCGGATAAAATACAAGAAATCAGTCTA 57.958 33.333 0.00 0.00 0.00 2.59
232 233 7.770897 AGCGGATAAAATACAAGAAATCAGTCT 59.229 33.333 0.00 0.00 0.00 3.24
233 234 7.852945 CAGCGGATAAAATACAAGAAATCAGTC 59.147 37.037 0.00 0.00 0.00 3.51
234 235 7.336931 ACAGCGGATAAAATACAAGAAATCAGT 59.663 33.333 0.00 0.00 0.00 3.41
235 236 7.697691 ACAGCGGATAAAATACAAGAAATCAG 58.302 34.615 0.00 0.00 0.00 2.90
236 237 7.624360 ACAGCGGATAAAATACAAGAAATCA 57.376 32.000 0.00 0.00 0.00 2.57
240 241 9.268268 CCTATAACAGCGGATAAAATACAAGAA 57.732 33.333 0.00 0.00 0.00 2.52
241 242 8.644216 TCCTATAACAGCGGATAAAATACAAGA 58.356 33.333 0.00 0.00 0.00 3.02
242 243 8.827177 TCCTATAACAGCGGATAAAATACAAG 57.173 34.615 0.00 0.00 0.00 3.16
243 244 8.426489 ACTCCTATAACAGCGGATAAAATACAA 58.574 33.333 0.00 0.00 0.00 2.41
244 245 7.959175 ACTCCTATAACAGCGGATAAAATACA 58.041 34.615 0.00 0.00 0.00 2.29
245 246 8.828688 AACTCCTATAACAGCGGATAAAATAC 57.171 34.615 0.00 0.00 0.00 1.89
246 247 9.268268 CAAACTCCTATAACAGCGGATAAAATA 57.732 33.333 0.00 0.00 0.00 1.40
247 248 7.773690 ACAAACTCCTATAACAGCGGATAAAAT 59.226 33.333 0.00 0.00 0.00 1.82
248 249 7.107542 ACAAACTCCTATAACAGCGGATAAAA 58.892 34.615 0.00 0.00 0.00 1.52
249 250 6.646267 ACAAACTCCTATAACAGCGGATAAA 58.354 36.000 0.00 0.00 0.00 1.40
250 251 6.229936 ACAAACTCCTATAACAGCGGATAA 57.770 37.500 0.00 0.00 0.00 1.75
251 252 5.864418 ACAAACTCCTATAACAGCGGATA 57.136 39.130 0.00 0.00 0.00 2.59
252 253 4.755266 ACAAACTCCTATAACAGCGGAT 57.245 40.909 0.00 0.00 0.00 4.18
253 254 5.664294 TTACAAACTCCTATAACAGCGGA 57.336 39.130 0.00 0.00 0.00 5.54
254 255 5.064325 GGTTTACAAACTCCTATAACAGCGG 59.936 44.000 4.93 0.00 38.89 5.52
255 256 5.873164 AGGTTTACAAACTCCTATAACAGCG 59.127 40.000 4.93 0.00 38.89 5.18
256 257 7.064728 CAGAGGTTTACAAACTCCTATAACAGC 59.935 40.741 4.93 0.00 38.89 4.40
257 258 8.095169 ACAGAGGTTTACAAACTCCTATAACAG 58.905 37.037 4.93 0.00 38.89 3.16
258 259 7.970102 ACAGAGGTTTACAAACTCCTATAACA 58.030 34.615 4.93 0.00 38.89 2.41
259 260 8.843885 AACAGAGGTTTACAAACTCCTATAAC 57.156 34.615 4.93 0.00 38.89 1.89
260 261 9.856162 AAAACAGAGGTTTACAAACTCCTATAA 57.144 29.630 4.93 0.00 46.20 0.98
261 262 9.856162 AAAAACAGAGGTTTACAAACTCCTATA 57.144 29.630 4.93 0.00 46.20 1.31
262 263 8.762481 AAAAACAGAGGTTTACAAACTCCTAT 57.238 30.769 4.93 0.00 46.20 2.57
293 294 8.350722 TGACAATGCATGCACATTTTAATTTTT 58.649 25.926 25.37 5.67 38.19 1.94
294 295 7.872881 TGACAATGCATGCACATTTTAATTTT 58.127 26.923 25.37 6.25 38.19 1.82
295 296 7.436430 TGACAATGCATGCACATTTTAATTT 57.564 28.000 25.37 7.08 38.19 1.82
296 297 7.436430 TTGACAATGCATGCACATTTTAATT 57.564 28.000 25.37 7.90 38.19 1.40
297 298 7.173562 ACTTTGACAATGCATGCACATTTTAAT 59.826 29.630 25.37 0.38 38.19 1.40
298 299 6.482641 ACTTTGACAATGCATGCACATTTTAA 59.517 30.769 25.37 12.55 38.19 1.52
299 300 5.990386 ACTTTGACAATGCATGCACATTTTA 59.010 32.000 25.37 5.36 38.19 1.52
300 301 4.817464 ACTTTGACAATGCATGCACATTTT 59.183 33.333 25.37 10.83 38.19 1.82
301 302 4.382291 ACTTTGACAATGCATGCACATTT 58.618 34.783 25.37 11.25 38.19 2.32
302 303 3.997762 ACTTTGACAATGCATGCACATT 58.002 36.364 25.37 12.10 40.90 2.71
303 304 3.671008 ACTTTGACAATGCATGCACAT 57.329 38.095 25.37 12.68 0.00 3.21
304 305 3.455990 AACTTTGACAATGCATGCACA 57.544 38.095 25.37 13.95 0.00 4.57
305 306 3.556775 ACAAACTTTGACAATGCATGCAC 59.443 39.130 25.37 11.08 0.00 4.57
306 307 3.556365 CACAAACTTTGACAATGCATGCA 59.444 39.130 25.04 25.04 0.00 3.96
307 308 3.803231 TCACAAACTTTGACAATGCATGC 59.197 39.130 11.82 11.82 0.00 4.06
308 309 5.521010 ACTTCACAAACTTTGACAATGCATG 59.479 36.000 8.55 0.00 0.00 4.06
309 310 5.663456 ACTTCACAAACTTTGACAATGCAT 58.337 33.333 8.55 0.00 0.00 3.96
310 311 5.070770 ACTTCACAAACTTTGACAATGCA 57.929 34.783 8.55 0.00 0.00 3.96
311 312 6.494842 TCTACTTCACAAACTTTGACAATGC 58.505 36.000 8.55 0.00 0.00 3.56
312 313 9.520204 AATTCTACTTCACAAACTTTGACAATG 57.480 29.630 8.55 0.00 0.00 2.82
340 341 8.650143 ACAGTGATCAATAACCAAAAGGTTAT 57.350 30.769 12.81 12.81 44.05 1.89
341 342 9.747898 ATACAGTGATCAATAACCAAAAGGTTA 57.252 29.630 9.32 9.32 38.47 2.85
342 343 6.976934 ACAGTGATCAATAACCAAAAGGTT 57.023 33.333 0.00 5.15 36.05 3.50
343 344 7.669722 ACATACAGTGATCAATAACCAAAAGGT 59.330 33.333 0.00 0.00 0.00 3.50
344 345 8.055279 ACATACAGTGATCAATAACCAAAAGG 57.945 34.615 0.00 0.00 0.00 3.11
356 357 8.507249 CGACATCTAAGATACATACAGTGATCA 58.493 37.037 0.00 0.00 0.00 2.92
357 358 7.483375 GCGACATCTAAGATACATACAGTGATC 59.517 40.741 0.00 0.00 0.00 2.92
358 359 7.309177 GCGACATCTAAGATACATACAGTGAT 58.691 38.462 0.00 0.00 0.00 3.06
359 360 6.565999 CGCGACATCTAAGATACATACAGTGA 60.566 42.308 0.00 0.00 0.00 3.41
360 361 5.565638 CGCGACATCTAAGATACATACAGTG 59.434 44.000 0.00 0.00 0.00 3.66
361 362 5.238868 ACGCGACATCTAAGATACATACAGT 59.761 40.000 15.93 0.00 0.00 3.55
362 363 5.690816 ACGCGACATCTAAGATACATACAG 58.309 41.667 15.93 0.00 0.00 2.74
363 364 5.684550 ACGCGACATCTAAGATACATACA 57.315 39.130 15.93 0.00 0.00 2.29
364 365 5.733572 GCTACGCGACATCTAAGATACATAC 59.266 44.000 15.93 0.00 0.00 2.39
365 366 5.410439 TGCTACGCGACATCTAAGATACATA 59.590 40.000 15.93 0.00 0.00 2.29
366 367 4.215613 TGCTACGCGACATCTAAGATACAT 59.784 41.667 15.93 0.00 0.00 2.29
367 368 3.562557 TGCTACGCGACATCTAAGATACA 59.437 43.478 15.93 0.00 0.00 2.29
368 369 4.143194 TGCTACGCGACATCTAAGATAC 57.857 45.455 15.93 0.00 0.00 2.24
369 370 4.823790 TTGCTACGCGACATCTAAGATA 57.176 40.909 15.93 0.00 0.00 1.98
370 371 3.710326 TTGCTACGCGACATCTAAGAT 57.290 42.857 15.93 0.00 0.00 2.40
371 372 3.372060 CATTGCTACGCGACATCTAAGA 58.628 45.455 15.93 0.00 0.00 2.10
372 373 2.097202 GCATTGCTACGCGACATCTAAG 60.097 50.000 15.93 0.00 0.00 2.18
373 374 1.858458 GCATTGCTACGCGACATCTAA 59.142 47.619 15.93 0.00 0.00 2.10
374 375 1.202359 TGCATTGCTACGCGACATCTA 60.202 47.619 15.93 0.00 0.00 1.98
375 376 0.460109 TGCATTGCTACGCGACATCT 60.460 50.000 15.93 0.00 0.00 2.90
376 377 0.373370 TTGCATTGCTACGCGACATC 59.627 50.000 15.93 0.00 0.00 3.06
377 378 0.374758 CTTGCATTGCTACGCGACAT 59.625 50.000 15.93 0.00 0.00 3.06
378 379 1.634757 CCTTGCATTGCTACGCGACA 61.635 55.000 15.93 4.89 0.00 4.35
379 380 1.060937 CCTTGCATTGCTACGCGAC 59.939 57.895 15.93 1.62 0.00 5.19
380 381 2.106074 CCCTTGCATTGCTACGCGA 61.106 57.895 15.93 0.00 0.00 5.87
381 382 2.404789 CCCTTGCATTGCTACGCG 59.595 61.111 3.53 3.53 0.00 6.01
382 383 2.102946 GCCCTTGCATTGCTACGC 59.897 61.111 10.49 2.79 37.47 4.42
383 384 3.589579 TGCCCTTGCATTGCTACG 58.410 55.556 10.49 0.00 44.23 3.51
392 393 2.092914 AGTACTAGGTGAATGCCCTTGC 60.093 50.000 0.00 0.00 33.35 4.01
393 394 3.914426 AGTACTAGGTGAATGCCCTTG 57.086 47.619 0.00 0.00 33.35 3.61
394 395 4.621769 ACTAGTACTAGGTGAATGCCCTT 58.378 43.478 29.05 5.33 37.49 3.95
395 396 4.216708 GACTAGTACTAGGTGAATGCCCT 58.783 47.826 29.05 8.21 37.49 5.19
396 397 3.321396 GGACTAGTACTAGGTGAATGCCC 59.679 52.174 29.05 14.56 37.49 5.36
397 398 3.958798 TGGACTAGTACTAGGTGAATGCC 59.041 47.826 29.05 18.52 37.49 4.40
398 399 5.593679 TTGGACTAGTACTAGGTGAATGC 57.406 43.478 29.05 15.92 37.49 3.56
494 496 7.011499 TGTCAAGGGTAGTAATGTTGTACAT 57.989 36.000 0.00 0.00 41.31 2.29
654 692 5.105756 GCTTGCAAGGGACTACATTTGTATT 60.106 40.000 27.10 0.00 38.49 1.89
663 701 3.543680 TCATAGCTTGCAAGGGACTAC 57.456 47.619 27.10 9.80 38.49 2.73
671 709 5.726980 AACCAAATCTTCATAGCTTGCAA 57.273 34.783 0.00 0.00 0.00 4.08
672 710 5.726980 AAACCAAATCTTCATAGCTTGCA 57.273 34.783 0.00 0.00 0.00 4.08
889 976 7.857389 TCGATGCTTATCAAACTGATTATTTGC 59.143 33.333 0.00 0.00 38.26 3.68
1051 1143 5.004448 TCATGGTGGATTTGCGTTAACTAA 58.996 37.500 3.71 0.00 0.00 2.24
1219 1362 2.243736 TGATGGGGTTGGGGAATAGTTC 59.756 50.000 0.00 0.00 0.00 3.01
1223 1366 2.383683 TGTTTGATGGGGTTGGGGAATA 59.616 45.455 0.00 0.00 0.00 1.75
1224 1367 1.150986 TGTTTGATGGGGTTGGGGAAT 59.849 47.619 0.00 0.00 0.00 3.01
1238 1381 3.320541 GTGGTTGATGGTGGAATGTTTGA 59.679 43.478 0.00 0.00 0.00 2.69
1249 1392 4.751767 AATGTTTGTTGTGGTTGATGGT 57.248 36.364 0.00 0.00 0.00 3.55
1266 1409 0.266152 TGTTGGGGTTGGGGAAATGT 59.734 50.000 0.00 0.00 0.00 2.71
1280 1423 2.813907 TGATGGGGGTATGTTTGTTGG 58.186 47.619 0.00 0.00 0.00 3.77
1291 1434 0.263172 TTGTTGTGGTTGATGGGGGT 59.737 50.000 0.00 0.00 0.00 4.95
1402 2407 1.535202 TGGGGGAATGGTTGTTGGC 60.535 57.895 0.00 0.00 0.00 4.52
1427 2432 1.542328 GGAAATGGTTGTTGGGGTTGC 60.542 52.381 0.00 0.00 0.00 4.17
1545 2614 5.530519 TGTTGTAGAAATGACTGAATCGC 57.469 39.130 0.00 0.00 0.00 4.58
1546 2615 6.887368 TGTTGTTGTAGAAATGACTGAATCG 58.113 36.000 0.00 0.00 0.00 3.34
1612 2681 4.511527 GAGAGATGACACCAATGACACAT 58.488 43.478 0.00 0.00 33.27 3.21
1646 2715 0.313672 GGCAATCACTTCGTGGCAAA 59.686 50.000 0.00 0.00 37.73 3.68
1763 2832 1.816224 ACGCCTTGTTGTTGTTCTTGT 59.184 42.857 0.00 0.00 0.00 3.16
1913 3141 2.359230 GTGGAGCAGTCAGGTGGC 60.359 66.667 0.00 0.00 0.00 5.01
1951 3179 2.564771 CACCAATGCCATCGTCTATGT 58.435 47.619 0.00 0.00 33.34 2.29
2265 3524 7.262048 GGAGCAGTCTATCAATAGCCTATTAC 58.738 42.308 0.00 0.00 0.00 1.89
2364 3631 8.794335 ACTAAAATGCCCTTTTACTTCTAGAG 57.206 34.615 0.00 0.00 38.09 2.43
2389 3657 1.533625 ATCAGGCGCTTGTTTTGCTA 58.466 45.000 19.74 0.00 0.00 3.49
2617 8671 0.676782 ACCTTCATTTTCCGGCTCCG 60.677 55.000 0.00 0.48 39.44 4.63
2624 8678 6.391227 TCTCTTGTGAAACCTTCATTTTCC 57.609 37.500 0.00 0.00 42.47 3.13
2635 8689 4.622701 AAGTGTTGCTCTCTTGTGAAAC 57.377 40.909 0.00 0.00 37.35 2.78
2637 8691 6.942532 ATAAAAGTGTTGCTCTCTTGTGAA 57.057 33.333 0.00 0.00 31.43 3.18
2648 8702 4.181578 TCCTCGCTCTATAAAAGTGTTGC 58.818 43.478 0.00 0.00 0.00 4.17
2704 8758 2.907458 AGTTGGGGCTATTTTGCTCT 57.093 45.000 0.00 0.00 33.17 4.09
2766 8820 2.541907 AAGGCAGGTGGTCAGGCAT 61.542 57.895 0.00 0.00 0.00 4.40
2773 8827 3.580319 GGACCCAAGGCAGGTGGT 61.580 66.667 0.00 0.00 37.88 4.16
2862 8916 0.318614 CAAGGGTGTTTTTCGCGCAT 60.319 50.000 8.75 0.00 41.08 4.73
2900 8955 2.560105 ACGTTCTCTGTACCTGGGTAAC 59.440 50.000 0.59 0.00 31.86 2.50
2903 8958 1.713297 AACGTTCTCTGTACCTGGGT 58.287 50.000 0.00 0.00 0.00 4.51
2905 8960 7.040473 AGATAATAACGTTCTCTGTACCTGG 57.960 40.000 2.82 0.00 0.00 4.45
2935 8990 4.850822 GGGTTTCCCTACTAGCGC 57.149 61.111 0.00 0.00 41.34 5.92
2965 9020 9.769677 ATATAGTTGTGGATGCTCCTAATAGTA 57.230 33.333 4.21 0.00 37.46 1.82
2978 9033 3.006967 GGAGCGTCCATATAGTTGTGGAT 59.993 47.826 0.00 0.00 44.01 3.41
3012 9067 3.075998 CACGCTGCTCGCTGTTAG 58.924 61.111 0.00 0.00 43.23 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.