Multiple sequence alignment - TraesCS1B01G009800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G009800 chr1B 100.000 4611 0 0 1 4611 4824741 4820131 0.000000e+00 8516.0
1 TraesCS1B01G009800 chr1B 85.753 3720 468 36 694 4367 4096110 4099813 0.000000e+00 3877.0
2 TraesCS1B01G009800 chr1B 84.592 3258 450 23 694 3926 3965090 3968320 0.000000e+00 3188.0
3 TraesCS1B01G009800 chr1B 84.154 3168 464 19 694 3835 4510304 4507149 0.000000e+00 3035.0
4 TraesCS1B01G009800 chr1B 83.748 3052 445 27 697 3714 4483135 4480101 0.000000e+00 2841.0
5 TraesCS1B01G009800 chr1B 90.416 2066 156 12 2334 4367 4530466 4528411 0.000000e+00 2680.0
6 TraesCS1B01G009800 chr1B 82.618 2934 457 24 694 3599 4591094 4588186 0.000000e+00 2543.0
7 TraesCS1B01G009800 chr1B 83.379 2569 394 15 1095 3639 4560707 4558148 0.000000e+00 2348.0
8 TraesCS1B01G009800 chr1B 85.246 2013 256 17 1730 3714 4566507 4564508 0.000000e+00 2034.0
9 TraesCS1B01G009800 chr1B 89.344 1342 83 17 2839 4151 4842014 4840704 0.000000e+00 1631.0
10 TraesCS1B01G009800 chr1B 87.552 1446 123 28 2922 4367 4862809 4861421 0.000000e+00 1620.0
11 TraesCS1B01G009800 chr1B 83.077 845 86 18 3221 4041 4153916 4154727 0.000000e+00 715.0
12 TraesCS1B01G009800 chr1B 98.413 315 4 1 1 314 4534584 4534270 1.870000e-153 553.0
13 TraesCS1B01G009800 chr1B 81.476 637 113 4 694 1327 687786033 687786667 6.840000e-143 518.0
14 TraesCS1B01G009800 chr1B 89.216 408 30 9 3965 4359 3968320 3968726 8.910000e-137 497.0
15 TraesCS1B01G009800 chr1B 86.563 387 47 5 3660 4046 3997913 3998294 5.520000e-114 422.0
16 TraesCS1B01G009800 chr1B 93.976 249 13 1 4364 4610 4099850 4100098 4.360000e-100 375.0
17 TraesCS1B01G009800 chr1B 91.200 250 19 2 4364 4611 4498595 4498347 2.060000e-88 337.0
18 TraesCS1B01G009800 chr1B 82.061 262 45 2 4092 4351 4758583 4758322 6.000000e-54 222.0
19 TraesCS1B01G009800 chr1B 81.884 276 21 4 4364 4610 3968768 3969043 6.050000e-49 206.0
20 TraesCS1B01G009800 chr1B 85.222 203 25 5 1 200 3978454 3978654 2.170000e-48 204.0
21 TraesCS1B01G009800 chr1B 90.123 162 9 5 4364 4519 4528374 4528214 2.170000e-48 204.0
22 TraesCS1B01G009800 chr1B 90.152 132 10 2 4364 4492 4838369 4838238 7.930000e-38 169.0
23 TraesCS1B01G009800 chr1B 89.286 112 12 0 4256 4367 4498743 4498632 1.730000e-29 141.0
24 TraesCS1B01G009800 chr1B 90.291 103 7 1 4511 4610 4528196 4528094 1.040000e-26 132.0
25 TraesCS1B01G009800 chr1B 88.235 102 12 0 213 314 4761943 4761842 6.270000e-24 122.0
26 TraesCS1B01G009800 chr1B 86.275 102 14 0 213 314 4510398 4510297 1.360000e-20 111.0
27 TraesCS1B01G009800 chr1B 84.685 111 16 1 207 317 3978589 3978698 4.880000e-20 110.0
28 TraesCS1B01G009800 chr1B 85.714 105 14 1 213 317 46825531 46825428 4.880000e-20 110.0
29 TraesCS1B01G009800 chr1B 96.610 59 2 0 4364 4422 4861384 4861326 1.060000e-16 99.0
30 TraesCS1B01G009800 chr1D 87.007 3094 353 21 1313 4366 460326 463410 0.000000e+00 3441.0
31 TraesCS1B01G009800 chr1D 84.192 3049 435 26 697 3714 620605 617573 0.000000e+00 2916.0
32 TraesCS1B01G009800 chr1D 84.052 232 34 3 1 230 392671 392901 2.160000e-53 220.0
33 TraesCS1B01G009800 chr1D 94.656 131 4 2 4364 4492 463448 463577 2.810000e-47 200.0
34 TraesCS1B01G009800 chr3D 84.109 3373 458 34 702 4041 560057572 560054245 0.000000e+00 3188.0
35 TraesCS1B01G009800 chr3D 89.189 74 8 0 3966 4039 560074956 560074883 4.910000e-15 93.5
36 TraesCS1B01G009800 chr1A 83.663 2981 427 34 694 3634 3503334 3500374 0.000000e+00 2752.0
37 TraesCS1B01G009800 chr1A 83.101 2941 434 33 694 3599 3491276 3488364 0.000000e+00 2619.0
38 TraesCS1B01G009800 chr1A 85.435 2403 327 7 1154 3535 27213123 27215523 0.000000e+00 2477.0
39 TraesCS1B01G009800 chr1A 83.160 481 60 11 3568 4046 27215527 27215988 1.980000e-113 420.0
40 TraesCS1B01G009800 chr1A 83.755 277 38 4 4092 4367 3487942 3487672 5.920000e-64 255.0
41 TraesCS1B01G009800 chr1A 81.609 261 46 2 4092 4351 2986440 2986699 1.000000e-51 215.0
42 TraesCS1B01G009800 chr1A 82.051 234 37 5 1 231 3701974 3701743 1.310000e-45 195.0
43 TraesCS1B01G009800 chr1A 91.538 130 11 0 4481 4610 3487661 3487532 3.670000e-41 180.0
44 TraesCS1B01G009800 chr1A 86.364 110 10 3 202 308 3628920 3628813 1.050000e-21 115.0
45 TraesCS1B01G009800 chr3B 99.475 381 2 0 315 695 794330040 794330420 0.000000e+00 693.0
46 TraesCS1B01G009800 chr3B 98.947 380 4 0 315 694 794358778 794358399 0.000000e+00 680.0
47 TraesCS1B01G009800 chr3B 93.985 399 20 4 310 705 739840260 739840657 6.600000e-168 601.0
48 TraesCS1B01G009800 chr6B 99.474 380 2 0 315 694 702566709 702567088 0.000000e+00 691.0
49 TraesCS1B01G009800 chr6B 98.958 384 4 0 314 697 18635025 18635408 0.000000e+00 688.0
50 TraesCS1B01G009800 chr6B 94.778 383 20 0 315 697 34860275 34859893 8.540000e-167 597.0
51 TraesCS1B01G009800 chr5B 99.474 380 2 0 314 693 475955670 475955291 0.000000e+00 691.0
52 TraesCS1B01G009800 chr7A 99.211 380 3 0 315 694 186397956 186398335 0.000000e+00 686.0
53 TraesCS1B01G009800 chr2A 99.208 379 3 0 315 693 10296504 10296126 0.000000e+00 684.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G009800 chr1B 4820131 4824741 4610 True 8516.00 8516 100.000000 1 4611 1 chr1B.!!$R3 4610
1 TraesCS1B01G009800 chr1B 4480101 4483135 3034 True 2841.00 2841 83.748000 697 3714 1 chr1B.!!$R1 3017
2 TraesCS1B01G009800 chr1B 4588186 4591094 2908 True 2543.00 2543 82.618000 694 3599 1 chr1B.!!$R2 2905
3 TraesCS1B01G009800 chr1B 4558148 4566507 8359 True 2191.00 2348 84.312500 1095 3714 2 chr1B.!!$R8 2619
4 TraesCS1B01G009800 chr1B 4096110 4100098 3988 False 2126.00 3877 89.864500 694 4610 2 chr1B.!!$F6 3916
5 TraesCS1B01G009800 chr1B 4507149 4510398 3249 True 1573.00 3035 85.214500 213 3835 2 chr1B.!!$R6 3622
6 TraesCS1B01G009800 chr1B 3965090 3969043 3953 False 1297.00 3188 85.230667 694 4610 3 chr1B.!!$F4 3916
7 TraesCS1B01G009800 chr1B 4838238 4842014 3776 True 900.00 1631 89.748000 2839 4492 2 chr1B.!!$R10 1653
8 TraesCS1B01G009800 chr1B 4528094 4534584 6490 True 892.25 2680 92.310750 1 4610 4 chr1B.!!$R7 4609
9 TraesCS1B01G009800 chr1B 4861326 4862809 1483 True 859.50 1620 92.081000 2922 4422 2 chr1B.!!$R11 1500
10 TraesCS1B01G009800 chr1B 4153916 4154727 811 False 715.00 715 83.077000 3221 4041 1 chr1B.!!$F2 820
11 TraesCS1B01G009800 chr1B 687786033 687786667 634 False 518.00 518 81.476000 694 1327 1 chr1B.!!$F3 633
12 TraesCS1B01G009800 chr1D 617573 620605 3032 True 2916.00 2916 84.192000 697 3714 1 chr1D.!!$R1 3017
13 TraesCS1B01G009800 chr1D 460326 463577 3251 False 1820.50 3441 90.831500 1313 4492 2 chr1D.!!$F2 3179
14 TraesCS1B01G009800 chr3D 560054245 560057572 3327 True 3188.00 3188 84.109000 702 4041 1 chr3D.!!$R1 3339
15 TraesCS1B01G009800 chr1A 3500374 3503334 2960 True 2752.00 2752 83.663000 694 3634 1 chr1A.!!$R1 2940
16 TraesCS1B01G009800 chr1A 27213123 27215988 2865 False 1448.50 2477 84.297500 1154 4046 2 chr1A.!!$F2 2892
17 TraesCS1B01G009800 chr1A 3487532 3491276 3744 True 1018.00 2619 86.131333 694 4610 3 chr1A.!!$R4 3916

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
651 653 0.025384 GCACGGAAATACGCGGTAAC 59.975 55.0 12.47 0.0 37.37 2.50 F
930 932 0.034186 TAGGCAGGCTGGTCCATTTG 60.034 55.0 17.64 0.0 37.29 2.32 F
1052 1054 0.253160 ACAGGCCCAATACCTCCAGA 60.253 55.0 0.00 0.0 34.42 3.86 F
1067 1069 0.253327 CCAGAACTAGGCAACCTCCC 59.747 60.0 0.00 0.0 34.61 4.30 F
2162 6950 0.462581 TTAGAAGGCCTGCAGATGCG 60.463 55.0 17.39 0.0 45.83 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2120 6907 0.611618 TCCAATCGCACCAGGCAAAT 60.612 50.000 0.00 0.0 45.17 2.32 R
2684 9645 0.105039 GCCGTATCCTCCTGTTCCAG 59.895 60.000 0.00 0.0 0.00 3.86 R
2895 9856 0.680921 GGCTGCCCTGCTCAATGTAA 60.681 55.000 7.66 0.0 0.00 2.41 R
2918 9879 3.091545 TCCTCATTTTCCAATGTCCTGC 58.908 45.455 0.00 0.0 40.78 4.85 R
3889 11134 0.541863 ATCCCACGTCCCTTGATCAC 59.458 55.000 0.00 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 6.947733 CCATTCCTTACATATATTGGCCTTCA 59.052 38.462 3.32 0.00 0.00 3.02
274 276 2.165234 TCTCAGATTGCTTGGTCTCTCG 59.835 50.000 0.00 0.00 0.00 4.04
311 313 2.613977 GGACATATTCCGGCATCTCTGG 60.614 54.545 0.00 0.00 42.90 3.86
314 316 1.048601 TATTCCGGCATCTCTGGGTC 58.951 55.000 0.00 0.00 41.78 4.46
315 317 0.982852 ATTCCGGCATCTCTGGGTCA 60.983 55.000 0.00 0.00 41.78 4.02
317 319 1.153289 CCGGCATCTCTGGGTCAAG 60.153 63.158 0.00 0.00 37.58 3.02
318 320 1.153289 CGGCATCTCTGGGTCAAGG 60.153 63.158 0.00 0.00 0.00 3.61
319 321 1.903877 CGGCATCTCTGGGTCAAGGT 61.904 60.000 0.00 0.00 0.00 3.50
320 322 0.329596 GGCATCTCTGGGTCAAGGTT 59.670 55.000 0.00 0.00 0.00 3.50
322 324 2.519013 GCATCTCTGGGTCAAGGTTTT 58.481 47.619 0.00 0.00 0.00 2.43
323 325 2.229784 GCATCTCTGGGTCAAGGTTTTG 59.770 50.000 0.00 0.00 35.57 2.44
324 326 2.656947 TCTCTGGGTCAAGGTTTTGG 57.343 50.000 0.00 0.00 34.97 3.28
326 328 2.243736 TCTCTGGGTCAAGGTTTTGGTT 59.756 45.455 0.00 0.00 34.97 3.67
328 330 3.558033 TCTGGGTCAAGGTTTTGGTTAC 58.442 45.455 0.00 0.00 34.97 2.50
329 331 2.626266 CTGGGTCAAGGTTTTGGTTACC 59.374 50.000 0.00 0.00 34.97 2.85
342 344 5.559148 TTTGGTTACCAAATGAGGCAATT 57.441 34.783 23.91 0.00 46.92 2.32
343 345 5.559148 TTGGTTACCAAATGAGGCAATTT 57.441 34.783 15.17 0.00 40.92 1.82
344 346 5.559148 TGGTTACCAAATGAGGCAATTTT 57.441 34.783 0.00 0.00 0.00 1.82
345 347 6.672266 TGGTTACCAAATGAGGCAATTTTA 57.328 33.333 0.00 0.00 0.00 1.52
346 348 6.459923 TGGTTACCAAATGAGGCAATTTTAC 58.540 36.000 0.00 0.00 0.00 2.01
347 349 5.872617 GGTTACCAAATGAGGCAATTTTACC 59.127 40.000 0.00 0.00 0.00 2.85
348 350 4.186856 ACCAAATGAGGCAATTTTACCG 57.813 40.909 0.00 0.00 0.00 4.02
350 352 4.282195 ACCAAATGAGGCAATTTTACCGAA 59.718 37.500 0.00 0.00 0.00 4.30
351 353 4.864247 CCAAATGAGGCAATTTTACCGAAG 59.136 41.667 0.00 0.00 0.00 3.79
365 367 3.074594 CGAAGGGGACGGGTAAATG 57.925 57.895 0.00 0.00 0.00 2.32
367 369 1.746470 GAAGGGGACGGGTAAATGTG 58.254 55.000 0.00 0.00 0.00 3.21
368 370 0.330267 AAGGGGACGGGTAAATGTGG 59.670 55.000 0.00 0.00 0.00 4.17
369 371 0.843343 AGGGGACGGGTAAATGTGGT 60.843 55.000 0.00 0.00 0.00 4.16
370 372 0.038599 GGGGACGGGTAAATGTGGTT 59.961 55.000 0.00 0.00 0.00 3.67
372 374 2.358957 GGGACGGGTAAATGTGGTTAC 58.641 52.381 0.00 0.00 33.91 2.50
397 399 4.376340 GGTTACCGAGAAATACCGAGAA 57.624 45.455 0.00 0.00 0.00 2.87
399 401 5.354767 GGTTACCGAGAAATACCGAGAAAT 58.645 41.667 0.00 0.00 0.00 2.17
400 402 6.507023 GGTTACCGAGAAATACCGAGAAATA 58.493 40.000 0.00 0.00 0.00 1.40
401 403 6.419116 GGTTACCGAGAAATACCGAGAAATAC 59.581 42.308 0.00 0.00 0.00 1.89
405 407 5.462398 CCGAGAAATACCGAGAAATACCAAG 59.538 44.000 0.00 0.00 0.00 3.61
406 408 6.270815 CGAGAAATACCGAGAAATACCAAGA 58.729 40.000 0.00 0.00 0.00 3.02
407 409 6.755141 CGAGAAATACCGAGAAATACCAAGAA 59.245 38.462 0.00 0.00 0.00 2.52
408 410 7.438459 CGAGAAATACCGAGAAATACCAAGAAT 59.562 37.037 0.00 0.00 0.00 2.40
414 416 7.478520 ACCGAGAAATACCAAGAATATTTCG 57.521 36.000 10.33 3.15 46.64 3.46
418 420 7.178712 AGAAATACCAAGAATATTTCGAGCG 57.821 36.000 10.33 0.00 46.64 5.03
419 421 6.984474 AGAAATACCAAGAATATTTCGAGCGA 59.016 34.615 10.33 0.00 46.64 4.93
420 422 7.494625 AGAAATACCAAGAATATTTCGAGCGAA 59.505 33.333 0.55 0.55 46.64 4.70
421 423 7.730364 AATACCAAGAATATTTCGAGCGAAT 57.270 32.000 6.12 0.37 33.79 3.34
422 424 7.730364 ATACCAAGAATATTTCGAGCGAATT 57.270 32.000 6.12 5.78 33.79 2.17
424 426 6.852664 ACCAAGAATATTTCGAGCGAATTTT 58.147 32.000 6.12 1.26 33.79 1.82
425 427 7.981142 ACCAAGAATATTTCGAGCGAATTTTA 58.019 30.769 6.12 0.49 33.79 1.52
426 428 8.621286 ACCAAGAATATTTCGAGCGAATTTTAT 58.379 29.630 6.12 0.00 33.79 1.40
437 439 9.834628 TTCGAGCGAATTTTATAGTTGAATTTT 57.165 25.926 0.55 0.00 0.00 1.82
438 440 9.272901 TCGAGCGAATTTTATAGTTGAATTTTG 57.727 29.630 0.00 0.00 0.00 2.44
439 441 9.272901 CGAGCGAATTTTATAGTTGAATTTTGA 57.727 29.630 0.00 0.00 0.00 2.69
460 462 8.422973 TTTGAATTCAAACAAGTGAATGAAGG 57.577 30.769 26.01 0.00 45.42 3.46
461 463 7.345422 TGAATTCAAACAAGTGAATGAAGGA 57.655 32.000 5.45 0.00 45.42 3.36
462 464 7.780064 TGAATTCAAACAAGTGAATGAAGGAA 58.220 30.769 5.45 0.00 45.42 3.36
464 466 9.912634 GAATTCAAACAAGTGAATGAAGGAATA 57.087 29.630 0.00 0.00 45.42 1.75
467 469 9.912634 TTCAAACAAGTGAATGAAGGAATATTC 57.087 29.630 6.93 6.93 32.56 1.75
468 470 8.236586 TCAAACAAGTGAATGAAGGAATATTCG 58.763 33.333 9.32 0.00 36.36 3.34
469 471 7.921786 AACAAGTGAATGAAGGAATATTCGA 57.078 32.000 9.32 0.00 36.36 3.71
470 472 7.921786 ACAAGTGAATGAAGGAATATTCGAA 57.078 32.000 9.32 0.00 36.36 3.71
472 474 6.927294 AGTGAATGAAGGAATATTCGAACC 57.073 37.500 9.32 0.00 36.36 3.62
473 475 6.414732 AGTGAATGAAGGAATATTCGAACCA 58.585 36.000 9.32 5.38 36.36 3.67
474 476 6.540189 AGTGAATGAAGGAATATTCGAACCAG 59.460 38.462 9.32 0.00 36.36 4.00
476 478 6.763135 TGAATGAAGGAATATTCGAACCAGAG 59.237 38.462 9.32 0.00 36.36 3.35
478 480 5.661458 TGAAGGAATATTCGAACCAGAGAC 58.339 41.667 9.32 0.00 31.52 3.36
481 483 4.342665 AGGAATATTCGAACCAGAGACCTC 59.657 45.833 9.32 0.00 0.00 3.85
482 484 4.342665 GGAATATTCGAACCAGAGACCTCT 59.657 45.833 9.32 0.00 41.37 3.69
483 485 5.508320 GGAATATTCGAACCAGAGACCTCTC 60.508 48.000 9.32 0.00 43.17 3.20
484 486 2.287977 TTCGAACCAGAGACCTCTCA 57.712 50.000 5.13 0.00 45.21 3.27
487 489 2.963101 TCGAACCAGAGACCTCTCAAAA 59.037 45.455 5.13 0.00 45.21 2.44
488 490 3.060602 CGAACCAGAGACCTCTCAAAAC 58.939 50.000 5.13 0.00 45.21 2.43
489 491 3.492656 CGAACCAGAGACCTCTCAAAACA 60.493 47.826 5.13 0.00 45.21 2.83
491 493 3.309296 ACCAGAGACCTCTCAAAACAGA 58.691 45.455 5.13 0.00 45.21 3.41
493 495 4.164221 ACCAGAGACCTCTCAAAACAGAAA 59.836 41.667 5.13 0.00 45.21 2.52
494 496 4.513318 CCAGAGACCTCTCAAAACAGAAAC 59.487 45.833 5.13 0.00 45.21 2.78
496 498 6.463049 CCAGAGACCTCTCAAAACAGAAACTA 60.463 42.308 5.13 0.00 45.21 2.24
497 499 6.644592 CAGAGACCTCTCAAAACAGAAACTAG 59.355 42.308 5.13 0.00 45.21 2.57
498 500 5.859495 AGACCTCTCAAAACAGAAACTAGG 58.141 41.667 0.00 0.00 0.00 3.02
499 501 5.367060 AGACCTCTCAAAACAGAAACTAGGT 59.633 40.000 0.00 0.00 0.00 3.08
500 502 6.002653 ACCTCTCAAAACAGAAACTAGGTT 57.997 37.500 0.00 0.00 0.00 3.50
501 503 5.823045 ACCTCTCAAAACAGAAACTAGGTTG 59.177 40.000 0.00 0.00 0.00 3.77
502 504 5.278022 CCTCTCAAAACAGAAACTAGGTTGC 60.278 44.000 0.00 0.00 0.00 4.17
504 506 6.588204 TCTCAAAACAGAAACTAGGTTGCTA 58.412 36.000 0.00 0.00 28.15 3.49
507 509 6.995686 TCAAAACAGAAACTAGGTTGCTATCA 59.004 34.615 0.00 0.00 28.15 2.15
508 510 7.500892 TCAAAACAGAAACTAGGTTGCTATCAA 59.499 33.333 0.00 0.00 28.15 2.57
520 522 2.368439 TGCTATCAACATGCCAGAACC 58.632 47.619 0.00 0.00 0.00 3.62
523 525 3.193267 GCTATCAACATGCCAGAACCAAA 59.807 43.478 0.00 0.00 0.00 3.28
524 526 4.142093 GCTATCAACATGCCAGAACCAAAT 60.142 41.667 0.00 0.00 0.00 2.32
525 527 3.940209 TCAACATGCCAGAACCAAATC 57.060 42.857 0.00 0.00 0.00 2.17
526 528 3.499338 TCAACATGCCAGAACCAAATCT 58.501 40.909 0.00 0.00 0.00 2.40
527 529 3.507233 TCAACATGCCAGAACCAAATCTC 59.493 43.478 0.00 0.00 0.00 2.75
528 530 3.159213 ACATGCCAGAACCAAATCTCA 57.841 42.857 0.00 0.00 0.00 3.27
529 531 3.705051 ACATGCCAGAACCAAATCTCAT 58.295 40.909 0.00 0.00 0.00 2.90
530 532 3.446161 ACATGCCAGAACCAAATCTCATG 59.554 43.478 0.00 0.00 37.53 3.07
531 533 2.449464 TGCCAGAACCAAATCTCATGG 58.551 47.619 0.00 0.00 43.84 3.66
533 535 2.449464 CCAGAACCAAATCTCATGGCA 58.551 47.619 0.00 0.00 41.89 4.92
534 536 3.028850 CCAGAACCAAATCTCATGGCAT 58.971 45.455 0.00 0.00 41.89 4.40
537 539 5.127519 CCAGAACCAAATCTCATGGCATTAA 59.872 40.000 0.00 0.00 41.89 1.40
538 540 6.183360 CCAGAACCAAATCTCATGGCATTAAT 60.183 38.462 0.00 0.00 41.89 1.40
539 541 7.270047 CAGAACCAAATCTCATGGCATTAATT 58.730 34.615 0.00 0.00 41.89 1.40
540 542 8.415553 CAGAACCAAATCTCATGGCATTAATTA 58.584 33.333 0.00 0.00 41.89 1.40
541 543 8.636213 AGAACCAAATCTCATGGCATTAATTAG 58.364 33.333 0.00 0.00 41.89 1.73
542 544 8.537728 AACCAAATCTCATGGCATTAATTAGA 57.462 30.769 0.00 0.00 41.89 2.10
543 545 8.716674 ACCAAATCTCATGGCATTAATTAGAT 57.283 30.769 0.00 0.00 41.89 1.98
544 546 8.800332 ACCAAATCTCATGGCATTAATTAGATC 58.200 33.333 0.00 0.00 41.89 2.75
545 547 8.248945 CCAAATCTCATGGCATTAATTAGATCC 58.751 37.037 0.00 0.00 0.00 3.36
546 548 9.021807 CAAATCTCATGGCATTAATTAGATCCT 57.978 33.333 0.00 0.00 0.00 3.24
548 550 9.902684 AATCTCATGGCATTAATTAGATCCTAG 57.097 33.333 0.00 0.00 0.00 3.02
549 551 7.855375 TCTCATGGCATTAATTAGATCCTAGG 58.145 38.462 0.82 0.82 0.00 3.02
550 552 7.459125 TCTCATGGCATTAATTAGATCCTAGGT 59.541 37.037 9.08 0.00 0.00 3.08
551 553 8.679344 TCATGGCATTAATTAGATCCTAGGTA 57.321 34.615 9.08 0.00 0.00 3.08
552 554 8.540388 TCATGGCATTAATTAGATCCTAGGTAC 58.460 37.037 9.08 4.28 0.00 3.34
554 556 8.506196 TGGCATTAATTAGATCCTAGGTACTT 57.494 34.615 9.08 0.00 41.75 2.24
555 557 8.945193 TGGCATTAATTAGATCCTAGGTACTTT 58.055 33.333 9.08 4.76 41.75 2.66
566 568 8.848182 AGATCCTAGGTACTTTACTGTAAATCG 58.152 37.037 12.95 5.85 41.75 3.34
567 569 8.757982 ATCCTAGGTACTTTACTGTAAATCGA 57.242 34.615 12.95 0.00 41.75 3.59
568 570 8.218338 TCCTAGGTACTTTACTGTAAATCGAG 57.782 38.462 12.95 4.70 41.75 4.04
569 571 7.831193 TCCTAGGTACTTTACTGTAAATCGAGT 59.169 37.037 12.95 9.93 41.75 4.18
570 572 7.914346 CCTAGGTACTTTACTGTAAATCGAGTG 59.086 40.741 12.95 3.91 41.75 3.51
573 575 8.146412 AGGTACTTTACTGTAAATCGAGTGTTT 58.854 33.333 12.95 0.00 27.25 2.83
620 622 3.348151 TTTTTGCTCGGTATGGCCA 57.652 47.368 8.56 8.56 36.97 5.36
621 623 1.846007 TTTTTGCTCGGTATGGCCAT 58.154 45.000 24.45 24.45 36.97 4.40
622 624 1.846007 TTTTGCTCGGTATGGCCATT 58.154 45.000 26.37 8.31 36.97 3.16
623 625 1.846007 TTTGCTCGGTATGGCCATTT 58.154 45.000 26.37 3.10 36.97 2.32
624 626 2.719531 TTGCTCGGTATGGCCATTTA 57.280 45.000 26.37 3.13 36.97 1.40
625 627 1.961793 TGCTCGGTATGGCCATTTAC 58.038 50.000 26.37 17.10 36.97 2.01
626 628 1.488812 TGCTCGGTATGGCCATTTACT 59.511 47.619 26.37 1.22 36.97 2.24
627 629 1.873591 GCTCGGTATGGCCATTTACTG 59.126 52.381 26.37 21.45 36.97 2.74
629 631 3.393800 CTCGGTATGGCCATTTACTGAG 58.606 50.000 30.18 30.18 42.38 3.35
630 632 2.104111 TCGGTATGGCCATTTACTGAGG 59.896 50.000 26.37 8.13 36.97 3.86
631 633 2.810400 CGGTATGGCCATTTACTGAGGG 60.810 54.545 26.37 2.23 36.97 4.30
632 634 2.489073 GGTATGGCCATTTACTGAGGGG 60.489 54.545 26.37 0.00 37.17 4.79
633 635 0.106015 ATGGCCATTTACTGAGGGGC 60.106 55.000 14.09 0.00 45.45 5.80
635 637 1.037579 GGCCATTTACTGAGGGGCAC 61.038 60.000 0.00 0.00 46.37 5.01
636 638 1.376609 GCCATTTACTGAGGGGCACG 61.377 60.000 0.00 0.00 44.01 5.34
637 639 0.748005 CCATTTACTGAGGGGCACGG 60.748 60.000 0.00 0.00 0.00 4.94
638 640 0.251916 CATTTACTGAGGGGCACGGA 59.748 55.000 0.00 0.00 0.00 4.69
639 641 0.988832 ATTTACTGAGGGGCACGGAA 59.011 50.000 0.00 0.00 0.00 4.30
640 642 0.766131 TTTACTGAGGGGCACGGAAA 59.234 50.000 0.00 0.00 0.00 3.13
642 644 1.868713 TACTGAGGGGCACGGAAATA 58.131 50.000 0.00 0.00 0.00 1.40
643 645 0.252197 ACTGAGGGGCACGGAAATAC 59.748 55.000 0.00 0.00 0.00 1.89
646 648 3.569690 GGGGCACGGAAATACGCG 61.570 66.667 3.53 3.53 37.37 6.01
647 649 3.569690 GGGCACGGAAATACGCGG 61.570 66.667 12.47 0.00 37.37 6.46
648 650 2.816520 GGCACGGAAATACGCGGT 60.817 61.111 12.47 0.00 37.37 5.68
649 651 1.519013 GGCACGGAAATACGCGGTA 60.519 57.895 12.47 0.25 37.37 4.02
650 652 1.083242 GGCACGGAAATACGCGGTAA 61.083 55.000 12.47 0.00 37.37 2.85
651 653 0.025384 GCACGGAAATACGCGGTAAC 59.975 55.000 12.47 0.00 37.37 2.50
652 654 0.646895 CACGGAAATACGCGGTAACC 59.353 55.000 12.47 6.30 37.37 2.85
653 655 0.246086 ACGGAAATACGCGGTAACCA 59.754 50.000 12.47 0.00 37.37 3.67
655 657 1.259507 CGGAAATACGCGGTAACCATG 59.740 52.381 12.47 0.00 0.00 3.66
656 658 1.600485 GGAAATACGCGGTAACCATGG 59.400 52.381 11.19 11.19 0.00 3.66
657 659 1.600485 GAAATACGCGGTAACCATGGG 59.400 52.381 18.09 0.00 0.00 4.00
658 660 0.831966 AATACGCGGTAACCATGGGA 59.168 50.000 18.09 0.00 0.00 4.37
659 661 0.831966 ATACGCGGTAACCATGGGAA 59.168 50.000 18.09 0.00 0.00 3.97
660 662 0.612229 TACGCGGTAACCATGGGAAA 59.388 50.000 18.09 0.00 0.00 3.13
661 663 0.034863 ACGCGGTAACCATGGGAAAT 60.035 50.000 18.09 1.59 0.00 2.17
662 664 0.661020 CGCGGTAACCATGGGAAATC 59.339 55.000 18.09 0.00 0.00 2.17
663 665 1.745827 CGCGGTAACCATGGGAAATCT 60.746 52.381 18.09 0.00 0.00 2.40
665 667 2.099098 GCGGTAACCATGGGAAATCTTG 59.901 50.000 18.09 0.00 0.00 3.02
668 670 4.461081 CGGTAACCATGGGAAATCTTGAAA 59.539 41.667 18.09 0.00 0.00 2.69
669 671 5.127031 CGGTAACCATGGGAAATCTTGAAAT 59.873 40.000 18.09 0.00 0.00 2.17
671 673 7.394016 GGTAACCATGGGAAATCTTGAAATTT 58.606 34.615 18.09 0.00 0.00 1.82
672 674 7.549134 GGTAACCATGGGAAATCTTGAAATTTC 59.451 37.037 18.09 11.41 42.41 2.17
674 676 5.480073 ACCATGGGAAATCTTGAAATTTCGA 59.520 36.000 18.09 10.62 43.52 3.71
675 677 5.807011 CCATGGGAAATCTTGAAATTTCGAC 59.193 40.000 13.34 0.00 43.52 4.20
676 678 5.385509 TGGGAAATCTTGAAATTTCGACC 57.614 39.130 13.34 8.29 43.52 4.79
684 686 3.123157 TGAAATTTCGACCGGTAACCA 57.877 42.857 7.34 0.00 0.00 3.67
685 687 3.474600 TGAAATTTCGACCGGTAACCAA 58.525 40.909 7.34 0.00 0.00 3.67
686 688 3.881688 TGAAATTTCGACCGGTAACCAAA 59.118 39.130 7.34 4.53 0.00 3.28
687 689 4.337555 TGAAATTTCGACCGGTAACCAAAA 59.662 37.500 7.34 4.39 0.00 2.44
688 690 3.902261 ATTTCGACCGGTAACCAAAAC 57.098 42.857 7.34 0.00 0.00 2.43
689 691 1.592064 TTCGACCGGTAACCAAAACC 58.408 50.000 7.34 0.00 0.00 3.27
690 692 0.758123 TCGACCGGTAACCAAAACCT 59.242 50.000 7.34 0.00 34.66 3.50
692 694 1.264826 CGACCGGTAACCAAAACCTTG 59.735 52.381 7.34 0.00 34.66 3.61
800 802 6.554334 TTGTCAGCCTACAATTTCTACAAC 57.446 37.500 0.00 0.00 34.50 3.32
802 804 6.999950 TGTCAGCCTACAATTTCTACAACTA 58.000 36.000 0.00 0.00 0.00 2.24
803 805 7.446769 TGTCAGCCTACAATTTCTACAACTAA 58.553 34.615 0.00 0.00 0.00 2.24
804 806 7.602644 TGTCAGCCTACAATTTCTACAACTAAG 59.397 37.037 0.00 0.00 0.00 2.18
805 807 6.594159 TCAGCCTACAATTTCTACAACTAAGC 59.406 38.462 0.00 0.00 0.00 3.09
806 808 6.371548 CAGCCTACAATTTCTACAACTAAGCA 59.628 38.462 0.00 0.00 0.00 3.91
807 809 6.371825 AGCCTACAATTTCTACAACTAAGCAC 59.628 38.462 0.00 0.00 0.00 4.40
810 812 6.952773 ACAATTTCTACAACTAAGCACCAA 57.047 33.333 0.00 0.00 0.00 3.67
811 813 6.735130 ACAATTTCTACAACTAAGCACCAAC 58.265 36.000 0.00 0.00 0.00 3.77
812 814 6.320164 ACAATTTCTACAACTAAGCACCAACA 59.680 34.615 0.00 0.00 0.00 3.33
815 817 4.968259 TCTACAACTAAGCACCAACACAT 58.032 39.130 0.00 0.00 0.00 3.21
817 819 6.526526 TCTACAACTAAGCACCAACACATTA 58.473 36.000 0.00 0.00 0.00 1.90
818 820 6.993308 TCTACAACTAAGCACCAACACATTAA 59.007 34.615 0.00 0.00 0.00 1.40
819 821 6.072112 ACAACTAAGCACCAACACATTAAG 57.928 37.500 0.00 0.00 0.00 1.85
820 822 4.766404 ACTAAGCACCAACACATTAAGC 57.234 40.909 0.00 0.00 0.00 3.09
821 823 2.704725 AAGCACCAACACATTAAGCG 57.295 45.000 0.00 0.00 0.00 4.68
822 824 0.881118 AGCACCAACACATTAAGCGG 59.119 50.000 0.00 0.00 0.00 5.52
823 825 0.732538 GCACCAACACATTAAGCGGC 60.733 55.000 0.00 0.00 0.00 6.53
824 826 0.595588 CACCAACACATTAAGCGGCA 59.404 50.000 1.45 0.00 0.00 5.69
825 827 0.596082 ACCAACACATTAAGCGGCAC 59.404 50.000 1.45 0.00 0.00 5.01
826 828 0.595588 CCAACACATTAAGCGGCACA 59.404 50.000 1.45 0.00 0.00 4.57
828 830 2.352617 CCAACACATTAAGCGGCACAAT 60.353 45.455 1.45 0.00 0.00 2.71
829 831 3.119673 CCAACACATTAAGCGGCACAATA 60.120 43.478 1.45 0.00 0.00 1.90
830 832 3.757745 ACACATTAAGCGGCACAATAC 57.242 42.857 1.45 0.00 0.00 1.89
831 833 2.422127 ACACATTAAGCGGCACAATACC 59.578 45.455 1.45 0.00 0.00 2.73
832 834 2.421775 CACATTAAGCGGCACAATACCA 59.578 45.455 1.45 0.00 0.00 3.25
834 836 3.508012 ACATTAAGCGGCACAATACCAAA 59.492 39.130 1.45 0.00 0.00 3.28
837 839 2.432206 AGCGGCACAATACCAAAAAC 57.568 45.000 1.45 0.00 0.00 2.43
838 840 1.000394 AGCGGCACAATACCAAAAACC 60.000 47.619 1.45 0.00 0.00 3.27
839 841 1.000394 GCGGCACAATACCAAAAACCT 60.000 47.619 0.00 0.00 0.00 3.50
840 842 2.547007 GCGGCACAATACCAAAAACCTT 60.547 45.455 0.00 0.00 0.00 3.50
841 843 3.056304 CGGCACAATACCAAAAACCTTG 58.944 45.455 0.00 0.00 0.00 3.61
842 844 3.398406 GGCACAATACCAAAAACCTTGG 58.602 45.455 1.93 1.93 44.91 3.61
845 847 5.119694 GCACAATACCAAAAACCTTGGAAA 58.880 37.500 10.42 0.00 42.06 3.13
846 848 5.762711 GCACAATACCAAAAACCTTGGAAAT 59.237 36.000 10.42 1.30 42.06 2.17
847 849 6.262049 GCACAATACCAAAAACCTTGGAAATT 59.738 34.615 10.42 6.74 42.06 1.82
848 850 7.201776 GCACAATACCAAAAACCTTGGAAATTT 60.202 33.333 10.42 0.00 42.06 1.82
850 852 8.049721 ACAATACCAAAAACCTTGGAAATTTGA 58.950 29.630 10.42 0.00 42.06 2.69
851 853 8.341903 CAATACCAAAAACCTTGGAAATTTGAC 58.658 33.333 10.42 0.00 42.06 3.18
852 854 5.189928 ACCAAAAACCTTGGAAATTTGACC 58.810 37.500 10.42 0.00 42.06 4.02
853 855 4.578516 CCAAAAACCTTGGAAATTTGACCC 59.421 41.667 0.00 0.00 42.06 4.46
855 857 5.443230 AAAACCTTGGAAATTTGACCCAA 57.557 34.783 8.95 8.95 37.60 4.12
857 859 3.653164 ACCTTGGAAATTTGACCCAACT 58.347 40.909 5.87 0.00 35.25 3.16
858 860 4.810345 ACCTTGGAAATTTGACCCAACTA 58.190 39.130 5.87 0.00 35.25 2.24
859 861 5.212745 ACCTTGGAAATTTGACCCAACTAA 58.787 37.500 5.87 0.00 35.25 2.24
860 862 5.663556 ACCTTGGAAATTTGACCCAACTAAA 59.336 36.000 5.87 0.00 35.25 1.85
861 863 6.328934 ACCTTGGAAATTTGACCCAACTAAAT 59.671 34.615 5.87 0.00 35.25 1.40
863 865 8.539544 CCTTGGAAATTTGACCCAACTAAATAT 58.460 33.333 5.87 0.00 35.25 1.28
864 866 9.942850 CTTGGAAATTTGACCCAACTAAATATT 57.057 29.630 5.87 0.00 35.25 1.28
873 875 9.974980 TTGACCCAACTAAATATTTTGTTTCTC 57.025 29.630 20.65 15.78 34.72 2.87
874 876 8.581578 TGACCCAACTAAATATTTTGTTTCTCC 58.418 33.333 20.65 13.03 34.72 3.71
875 877 8.485578 ACCCAACTAAATATTTTGTTTCTCCA 57.514 30.769 20.65 0.00 34.72 3.86
886 888 6.887626 TTTTGTTTCTCCATAGTAACCACC 57.112 37.500 0.00 0.00 33.38 4.61
887 889 5.836024 TTGTTTCTCCATAGTAACCACCT 57.164 39.130 0.00 0.00 33.38 4.00
888 890 5.836024 TGTTTCTCCATAGTAACCACCTT 57.164 39.130 0.00 0.00 33.38 3.50
890 892 6.235664 TGTTTCTCCATAGTAACCACCTTTC 58.764 40.000 0.00 0.00 33.38 2.62
891 893 6.183361 TGTTTCTCCATAGTAACCACCTTTCA 60.183 38.462 0.00 0.00 33.38 2.69
892 894 5.677319 TCTCCATAGTAACCACCTTTCAG 57.323 43.478 0.00 0.00 0.00 3.02
895 897 4.847512 TCCATAGTAACCACCTTTCAGGAA 59.152 41.667 0.00 0.00 37.67 3.36
896 898 4.941873 CCATAGTAACCACCTTTCAGGAAC 59.058 45.833 0.00 0.00 37.67 3.62
897 899 5.280521 CCATAGTAACCACCTTTCAGGAACT 60.281 44.000 0.00 0.00 37.67 3.01
899 901 7.365652 CCATAGTAACCACCTTTCAGGAACTAT 60.366 40.741 0.00 0.00 37.67 2.12
900 902 8.701895 CATAGTAACCACCTTTCAGGAACTATA 58.298 37.037 0.00 0.00 37.67 1.31
901 903 6.944096 AGTAACCACCTTTCAGGAACTATAC 58.056 40.000 0.00 0.00 37.67 1.47
902 904 4.838904 ACCACCTTTCAGGAACTATACC 57.161 45.455 0.00 0.00 37.67 2.73
903 905 3.522343 ACCACCTTTCAGGAACTATACCC 59.478 47.826 0.00 0.00 37.67 3.69
904 906 3.118000 CCACCTTTCAGGAACTATACCCC 60.118 52.174 0.00 0.00 37.67 4.95
905 907 3.521937 CACCTTTCAGGAACTATACCCCA 59.478 47.826 0.00 0.00 37.67 4.96
906 908 4.018779 CACCTTTCAGGAACTATACCCCAA 60.019 45.833 0.00 0.00 37.67 4.12
907 909 4.227527 ACCTTTCAGGAACTATACCCCAAG 59.772 45.833 0.00 0.00 37.67 3.61
908 910 4.473559 CCTTTCAGGAACTATACCCCAAGA 59.526 45.833 0.00 0.00 37.67 3.02
909 911 5.045140 CCTTTCAGGAACTATACCCCAAGAA 60.045 44.000 0.00 0.00 37.67 2.52
910 912 5.431179 TTCAGGAACTATACCCCAAGAAC 57.569 43.478 0.00 0.00 36.02 3.01
911 913 4.695606 TCAGGAACTATACCCCAAGAACT 58.304 43.478 0.00 0.00 36.02 3.01
913 915 5.897824 TCAGGAACTATACCCCAAGAACTAG 59.102 44.000 0.00 0.00 36.02 2.57
915 917 4.202336 GGAACTATACCCCAAGAACTAGGC 60.202 50.000 0.00 0.00 0.00 3.93
916 918 4.003584 ACTATACCCCAAGAACTAGGCA 57.996 45.455 0.00 0.00 0.00 4.75
917 919 3.967987 ACTATACCCCAAGAACTAGGCAG 59.032 47.826 0.00 0.00 0.00 4.85
918 920 1.580059 TACCCCAAGAACTAGGCAGG 58.420 55.000 0.00 0.00 0.00 4.85
919 921 1.077429 CCCCAAGAACTAGGCAGGC 60.077 63.158 0.00 0.00 0.00 4.85
921 923 0.393537 CCCAAGAACTAGGCAGGCTG 60.394 60.000 10.94 10.94 0.00 4.85
922 924 0.393537 CCAAGAACTAGGCAGGCTGG 60.394 60.000 17.64 6.22 0.00 4.85
923 925 0.326264 CAAGAACTAGGCAGGCTGGT 59.674 55.000 17.64 7.23 0.00 4.00
924 926 0.615850 AAGAACTAGGCAGGCTGGTC 59.384 55.000 17.64 8.23 0.00 4.02
925 927 1.222113 GAACTAGGCAGGCTGGTCC 59.778 63.158 17.64 9.93 0.00 4.46
926 928 1.538876 AACTAGGCAGGCTGGTCCA 60.539 57.895 17.64 0.00 37.29 4.02
927 929 0.916358 AACTAGGCAGGCTGGTCCAT 60.916 55.000 17.64 0.00 37.29 3.41
928 930 0.916358 ACTAGGCAGGCTGGTCCATT 60.916 55.000 17.64 0.00 37.29 3.16
929 931 0.257039 CTAGGCAGGCTGGTCCATTT 59.743 55.000 17.64 0.00 37.29 2.32
930 932 0.034186 TAGGCAGGCTGGTCCATTTG 60.034 55.000 17.64 0.00 37.29 2.32
931 933 2.575461 GCAGGCTGGTCCATTTGC 59.425 61.111 17.64 0.00 37.29 3.68
932 934 2.277591 GCAGGCTGGTCCATTTGCA 61.278 57.895 17.64 0.00 34.63 4.08
935 937 1.070445 CAGGCTGGTCCATTTGCAAAA 59.930 47.619 17.19 0.00 37.29 2.44
936 938 1.345415 AGGCTGGTCCATTTGCAAAAG 59.655 47.619 17.19 12.00 37.29 2.27
940 942 2.803956 CTGGTCCATTTGCAAAAGCTTG 59.196 45.455 17.19 9.69 35.49 4.01
941 943 2.170187 TGGTCCATTTGCAAAAGCTTGT 59.830 40.909 17.19 0.00 34.79 3.16
942 944 2.545106 GGTCCATTTGCAAAAGCTTGTG 59.455 45.455 17.19 12.62 34.79 3.33
943 945 2.032636 GTCCATTTGCAAAAGCTTGTGC 60.033 45.455 30.99 30.99 41.29 4.57
959 961 6.956299 GCTTGTGCTTCATGTAAATGAATT 57.044 33.333 8.80 0.00 39.52 2.17
960 962 7.355332 GCTTGTGCTTCATGTAAATGAATTT 57.645 32.000 8.80 0.00 39.52 1.82
961 963 7.799784 GCTTGTGCTTCATGTAAATGAATTTT 58.200 30.769 8.80 0.00 39.52 1.82
962 964 7.953710 GCTTGTGCTTCATGTAAATGAATTTTC 59.046 33.333 8.80 2.11 39.52 2.29
963 965 8.883954 TTGTGCTTCATGTAAATGAATTTTCA 57.116 26.923 8.80 4.37 39.52 2.69
964 966 8.523523 TGTGCTTCATGTAAATGAATTTTCAG 57.476 30.769 8.80 0.00 41.08 3.02
966 968 7.599998 GTGCTTCATGTAAATGAATTTTCAGGT 59.400 33.333 8.80 0.00 41.08 4.00
967 969 7.814107 TGCTTCATGTAAATGAATTTTCAGGTC 59.186 33.333 8.80 0.00 41.08 3.85
968 970 7.276438 GCTTCATGTAAATGAATTTTCAGGTCC 59.724 37.037 8.80 0.00 41.08 4.46
969 971 7.773489 TCATGTAAATGAATTTTCAGGTCCA 57.227 32.000 0.00 0.00 41.08 4.02
972 974 9.439500 CATGTAAATGAATTTTCAGGTCCAATT 57.561 29.630 0.00 0.00 41.08 2.32
974 976 8.093927 TGTAAATGAATTTTCAGGTCCAATTCC 58.906 33.333 8.99 0.00 41.08 3.01
976 978 6.684897 ATGAATTTTCAGGTCCAATTCCAA 57.315 33.333 8.99 0.00 41.08 3.53
977 979 6.684897 TGAATTTTCAGGTCCAATTCCAAT 57.315 33.333 8.99 0.00 36.48 3.16
979 981 8.378115 TGAATTTTCAGGTCCAATTCCAATAT 57.622 30.769 8.99 0.00 36.48 1.28
980 982 8.477256 TGAATTTTCAGGTCCAATTCCAATATC 58.523 33.333 8.99 0.00 36.48 1.63
981 983 6.790232 TTTTCAGGTCCAATTCCAATATCC 57.210 37.500 0.00 0.00 0.00 2.59
982 984 5.464588 TTCAGGTCCAATTCCAATATCCA 57.535 39.130 0.00 0.00 0.00 3.41
985 987 7.160457 TCAGGTCCAATTCCAATATCCATAA 57.840 36.000 0.00 0.00 0.00 1.90
986 988 7.004086 TCAGGTCCAATTCCAATATCCATAAC 58.996 38.462 0.00 0.00 0.00 1.89
988 990 7.287466 CAGGTCCAATTCCAATATCCATAACAA 59.713 37.037 0.00 0.00 0.00 2.83
989 991 7.843760 AGGTCCAATTCCAATATCCATAACAAA 59.156 33.333 0.00 0.00 0.00 2.83
990 992 8.650490 GGTCCAATTCCAATATCCATAACAAAT 58.350 33.333 0.00 0.00 0.00 2.32
991 993 9.696917 GTCCAATTCCAATATCCATAACAAATC 57.303 33.333 0.00 0.00 0.00 2.17
992 994 9.659135 TCCAATTCCAATATCCATAACAAATCT 57.341 29.630 0.00 0.00 0.00 2.40
1020 1022 8.254508 ACTAAGATGAACACACTTATTCTCTCC 58.745 37.037 0.00 0.00 0.00 3.71
1023 1025 5.661056 TGAACACACTTATTCTCTCCGAT 57.339 39.130 0.00 0.00 0.00 4.18
1024 1026 6.769134 TGAACACACTTATTCTCTCCGATA 57.231 37.500 0.00 0.00 0.00 2.92
1026 1028 7.782049 TGAACACACTTATTCTCTCCGATAAT 58.218 34.615 0.00 0.00 0.00 1.28
1027 1029 7.921214 TGAACACACTTATTCTCTCCGATAATC 59.079 37.037 0.00 0.00 0.00 1.75
1028 1030 7.348080 ACACACTTATTCTCTCCGATAATCA 57.652 36.000 0.00 0.00 0.00 2.57
1029 1031 7.782049 ACACACTTATTCTCTCCGATAATCAA 58.218 34.615 0.00 0.00 0.00 2.57
1030 1032 8.258007 ACACACTTATTCTCTCCGATAATCAAA 58.742 33.333 0.00 0.00 0.00 2.69
1032 1034 9.482627 ACACTTATTCTCTCCGATAATCAAATC 57.517 33.333 0.00 0.00 0.00 2.17
1033 1035 9.481340 CACTTATTCTCTCCGATAATCAAATCA 57.519 33.333 0.00 0.00 0.00 2.57
1037 1039 5.847304 TCTCTCCGATAATCAAATCACAGG 58.153 41.667 0.00 0.00 0.00 4.00
1040 1042 2.554032 CCGATAATCAAATCACAGGCCC 59.446 50.000 0.00 0.00 0.00 5.80
1043 1045 4.279169 CGATAATCAAATCACAGGCCCAAT 59.721 41.667 0.00 0.00 0.00 3.16
1045 1047 6.568462 CGATAATCAAATCACAGGCCCAATAC 60.568 42.308 0.00 0.00 0.00 1.89
1046 1048 2.733956 TCAAATCACAGGCCCAATACC 58.266 47.619 0.00 0.00 0.00 2.73
1047 1049 2.311542 TCAAATCACAGGCCCAATACCT 59.688 45.455 0.00 0.00 38.35 3.08
1048 1050 2.689983 CAAATCACAGGCCCAATACCTC 59.310 50.000 0.00 0.00 34.42 3.85
1049 1051 0.846693 ATCACAGGCCCAATACCTCC 59.153 55.000 0.00 0.00 34.42 4.30
1050 1052 0.548926 TCACAGGCCCAATACCTCCA 60.549 55.000 0.00 0.00 34.42 3.86
1052 1054 0.253160 ACAGGCCCAATACCTCCAGA 60.253 55.000 0.00 0.00 34.42 3.86
1054 1056 0.919710 AGGCCCAATACCTCCAGAAC 59.080 55.000 0.00 0.00 28.76 3.01
1055 1057 0.919710 GGCCCAATACCTCCAGAACT 59.080 55.000 0.00 0.00 0.00 3.01
1057 1059 2.104963 GGCCCAATACCTCCAGAACTAG 59.895 54.545 0.00 0.00 0.00 2.57
1059 1061 2.104963 CCCAATACCTCCAGAACTAGGC 59.895 54.545 0.00 0.00 36.24 3.93
1062 1064 4.192317 CAATACCTCCAGAACTAGGCAAC 58.808 47.826 0.00 0.00 36.24 4.17
1063 1065 0.984995 ACCTCCAGAACTAGGCAACC 59.015 55.000 0.00 0.00 36.24 3.77
1064 1066 1.280457 CCTCCAGAACTAGGCAACCT 58.720 55.000 0.00 0.00 37.71 3.50
1065 1067 1.208293 CCTCCAGAACTAGGCAACCTC 59.792 57.143 0.00 0.00 34.61 3.85
1066 1068 1.208293 CTCCAGAACTAGGCAACCTCC 59.792 57.143 0.00 0.00 34.61 4.30
1067 1069 0.253327 CCAGAACTAGGCAACCTCCC 59.747 60.000 0.00 0.00 34.61 4.30
1069 1071 2.467880 CAGAACTAGGCAACCTCCCTA 58.532 52.381 0.00 0.00 34.61 3.53
1070 1072 3.041946 CAGAACTAGGCAACCTCCCTAT 58.958 50.000 0.00 0.00 34.59 2.57
1072 1074 1.132500 ACTAGGCAACCTCCCTATGC 58.868 55.000 0.00 0.00 39.33 3.14
1073 1075 1.344496 ACTAGGCAACCTCCCTATGCT 60.344 52.381 0.00 0.00 39.94 3.79
1074 1076 2.090719 ACTAGGCAACCTCCCTATGCTA 60.091 50.000 0.00 0.00 39.94 3.49
1075 1077 1.893315 AGGCAACCTCCCTATGCTAA 58.107 50.000 0.00 0.00 39.94 3.09
1076 1078 2.205342 AGGCAACCTCCCTATGCTAAA 58.795 47.619 0.00 0.00 39.94 1.85
1077 1079 2.092375 AGGCAACCTCCCTATGCTAAAC 60.092 50.000 0.00 0.00 39.94 2.01
1078 1080 2.298610 GCAACCTCCCTATGCTAAACC 58.701 52.381 0.00 0.00 37.12 3.27
1080 1082 3.876156 GCAACCTCCCTATGCTAAACCAA 60.876 47.826 0.00 0.00 37.12 3.67
1081 1083 3.646736 ACCTCCCTATGCTAAACCAAC 57.353 47.619 0.00 0.00 0.00 3.77
1082 1084 3.190439 ACCTCCCTATGCTAAACCAACT 58.810 45.455 0.00 0.00 0.00 3.16
1083 1085 3.591977 ACCTCCCTATGCTAAACCAACTT 59.408 43.478 0.00 0.00 0.00 2.66
1085 1087 5.432060 ACCTCCCTATGCTAAACCAACTTAT 59.568 40.000 0.00 0.00 0.00 1.73
1086 1088 5.765182 CCTCCCTATGCTAAACCAACTTATG 59.235 44.000 0.00 0.00 0.00 1.90
1089 1091 5.239525 CCCTATGCTAAACCAACTTATGCTC 59.760 44.000 0.00 0.00 0.00 4.26
1090 1092 6.058183 CCTATGCTAAACCAACTTATGCTCT 58.942 40.000 0.00 0.00 0.00 4.09
1093 1095 5.183228 TGCTAAACCAACTTATGCTCTACC 58.817 41.667 0.00 0.00 0.00 3.18
1094 1096 5.183228 GCTAAACCAACTTATGCTCTACCA 58.817 41.667 0.00 0.00 0.00 3.25
1096 1098 6.150474 GCTAAACCAACTTATGCTCTACCAAA 59.850 38.462 0.00 0.00 0.00 3.28
1131 5910 3.451178 GCTCAATACCCACAGAACTAGGA 59.549 47.826 0.00 0.00 0.00 2.94
1250 6029 7.537596 TGGAATTGTCAGTCAACCAAATATT 57.462 32.000 0.00 0.00 38.97 1.28
1297 6076 8.276453 AGGAAATATTACCAACCTAGTAGCAT 57.724 34.615 0.00 0.00 0.00 3.79
1309 6088 7.181125 CCAACCTAGTAGCATTATCCCTCTATT 59.819 40.741 0.00 0.00 0.00 1.73
1327 6106 9.495572 CCCTCTATTTTAATCAGATAACTGGTC 57.504 37.037 0.00 0.00 43.60 4.02
1460 6239 8.554528 CCATGATCTGACAATCTACAATAACAC 58.445 37.037 0.00 0.00 0.00 3.32
1462 6241 8.479313 TGATCTGACAATCTACAATAACACAC 57.521 34.615 0.00 0.00 0.00 3.82
1481 6260 5.364157 ACACACTATCAGGTTATCTTCCTCC 59.636 44.000 0.00 0.00 32.37 4.30
1482 6261 4.585162 ACACTATCAGGTTATCTTCCTCCG 59.415 45.833 0.00 0.00 32.37 4.63
1490 6269 3.197116 GGTTATCTTCCTCCGGAGTTTGA 59.803 47.826 29.25 21.93 31.21 2.69
1491 6270 4.182339 GTTATCTTCCTCCGGAGTTTGAC 58.818 47.826 29.25 14.15 31.21 3.18
1531 6310 8.589335 TGTTAATCTTTCGATATCTAGCAACC 57.411 34.615 0.34 0.00 0.00 3.77
1600 6379 9.956720 AACTTCAATTTCTCAGTGTCTTTAATG 57.043 29.630 0.00 0.00 0.00 1.90
1650 6429 7.284489 AGGAGTTTAAAGACATGCACAAGTTTA 59.716 33.333 0.00 0.00 0.00 2.01
1850 6633 7.460214 TGGGTTCCATACCTAGTATCATTTT 57.540 36.000 0.00 0.00 46.86 1.82
1868 6651 6.454795 TCATTTTCAAATTGTCCAACCTAGC 58.545 36.000 0.00 0.00 0.00 3.42
1992 6776 4.286808 TCTGGATCCATACCCACACATATG 59.713 45.833 16.63 0.00 0.00 1.78
2004 6788 6.311735 ACCCACACATATGGAAAAGTTAAGT 58.688 36.000 7.80 0.00 43.02 2.24
2056 6840 7.069578 GGAACAGACTGAGTGGATTAATACCTA 59.930 40.741 10.08 0.00 0.00 3.08
2075 6862 3.118261 CCTAAGGAACTAGGAGCATGCAA 60.118 47.826 21.98 0.93 38.49 4.08
2120 6907 3.958018 ACAACAACAACTTCAGTGGGTA 58.042 40.909 0.00 0.00 0.00 3.69
2147 6935 3.694072 CCTGGTGCGATTGGAAATTTAGA 59.306 43.478 0.00 0.00 0.00 2.10
2160 6948 4.202090 GGAAATTTAGAAGGCCTGCAGATG 60.202 45.833 17.39 0.00 0.00 2.90
2162 6950 0.462581 TTAGAAGGCCTGCAGATGCG 60.463 55.000 17.39 0.00 45.83 4.73
2176 6964 1.759445 AGATGCGGTTAGATGTGAGCT 59.241 47.619 0.00 0.00 0.00 4.09
2187 6975 3.960571 AGATGTGAGCTGCAATAACCTT 58.039 40.909 1.02 0.00 0.00 3.50
2251 7039 8.853126 TGCTAGAATTTCTGAATTTATCCCATG 58.147 33.333 9.22 0.00 35.65 3.66
2298 7086 0.963962 CCTTTGCAAGCATGGTGAGT 59.036 50.000 0.00 0.00 0.00 3.41
2306 7094 3.243501 GCAAGCATGGTGAGTCTTTCAAA 60.244 43.478 0.00 0.00 37.61 2.69
2421 9379 2.158370 TCTGTGTGGTAACCTCTCTGGA 60.158 50.000 0.00 0.00 39.71 3.86
2446 9404 7.379750 ACTGACTCCTTGTTATTCAACTCTAC 58.620 38.462 0.00 0.00 35.56 2.59
2465 9426 1.021968 CTAGTTGGCCGCCATAAACC 58.978 55.000 14.30 0.00 31.53 3.27
2466 9427 0.621609 TAGTTGGCCGCCATAAACCT 59.378 50.000 14.30 7.06 31.53 3.50
2583 9544 2.799126 AACCACAAGAAGGTGTCACA 57.201 45.000 5.12 0.00 39.86 3.58
2590 9551 2.246719 AGAAGGTGTCACAGCTGAAC 57.753 50.000 23.35 17.92 41.59 3.18
2680 9641 3.117507 CGAAGACTTCAACGACAAGTACG 59.882 47.826 15.36 0.00 34.10 3.67
2684 9645 3.111098 ACTTCAACGACAAGTACGTCAC 58.889 45.455 0.00 0.00 43.16 3.67
2762 9723 1.141657 TGCTGTGAAGAAGCTTCACCT 59.858 47.619 27.57 11.97 46.01 4.00
2798 9759 6.234177 AGTTGGATGACGAAAGAAGATTTCT 58.766 36.000 0.00 0.00 43.15 2.52
2832 9793 5.694006 GGAAATCTTATCACAGATCCGACAG 59.306 44.000 0.00 0.00 31.87 3.51
2889 9850 7.014518 TCCCATCCAGCATATAAATTTCTTGTG 59.985 37.037 0.00 0.00 0.00 3.33
2893 9854 8.800370 TCCAGCATATAAATTTCTTGTGTACA 57.200 30.769 0.00 0.00 0.00 2.90
3289 10265 4.803088 GCAGAACTCTCATACACATCAGTC 59.197 45.833 0.00 0.00 0.00 3.51
3395 10389 3.445096 GGAACAAGCTATGCTGGTGAAAT 59.555 43.478 0.00 0.00 42.67 2.17
3401 10395 9.573166 AACAAGCTATGCTGGTGAAATATATTA 57.427 29.630 0.00 0.00 42.67 0.98
3426 10420 4.966787 ACGGCCGGCAACACCAAT 62.967 61.111 31.76 0.00 39.03 3.16
3504 10504 0.767375 TCTTCTCCACAAGCAAGGCT 59.233 50.000 0.00 0.00 42.56 4.58
3602 10603 4.910458 ACATTACAGCAAGTAAGGGACT 57.090 40.909 15.08 0.00 46.01 3.85
3639 10813 4.377839 TCTGAATTCTAGTGAGAAGCCG 57.622 45.455 7.05 0.00 44.90 5.52
3640 10814 4.017126 TCTGAATTCTAGTGAGAAGCCGA 58.983 43.478 7.05 0.00 44.90 5.54
3641 10815 4.646945 TCTGAATTCTAGTGAGAAGCCGAT 59.353 41.667 7.05 0.00 44.90 4.18
3642 10816 5.127845 TCTGAATTCTAGTGAGAAGCCGATT 59.872 40.000 7.05 0.00 44.90 3.34
3643 10817 5.734720 TGAATTCTAGTGAGAAGCCGATTT 58.265 37.500 7.05 0.00 44.90 2.17
3741 10919 5.028549 AGTCTGTAATCATCCCATGTCAC 57.971 43.478 0.00 0.00 0.00 3.67
3748 10926 3.686916 TCATCCCATGTCACGTTGTAA 57.313 42.857 0.00 0.00 0.00 2.41
3835 11080 6.146837 CAGATCAGTAGTTGCATGCTATTACC 59.853 42.308 23.84 13.08 0.00 2.85
3862 11107 1.594833 GTGGGATGGCACGAGTACA 59.405 57.895 0.00 0.00 0.00 2.90
4383 13775 2.655090 TGCAAAGTCCCAGATGACAA 57.345 45.000 0.00 0.00 37.73 3.18
4565 13991 6.313519 AGAGAACAGCTCCATTTACCATTA 57.686 37.500 0.00 0.00 45.10 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.734253 CCGAGAAGTTGAGCTCACCG 60.734 60.000 18.03 12.44 0.00 4.94
58 59 5.721960 ACTACACCATGGAGACTATTGTTCT 59.278 40.000 21.47 0.00 31.17 3.01
274 276 7.064728 GGAATATGTCCTGTGAGTCTGTTAAAC 59.935 40.741 0.00 0.00 43.98 2.01
306 308 2.364972 ACCAAAACCTTGACCCAGAG 57.635 50.000 0.00 0.00 34.14 3.35
307 309 2.838637 AACCAAAACCTTGACCCAGA 57.161 45.000 0.00 0.00 34.14 3.86
322 324 5.559148 AAAATTGCCTCATTTGGTAACCA 57.441 34.783 0.00 0.00 34.68 3.67
323 325 5.872617 GGTAAAATTGCCTCATTTGGTAACC 59.127 40.000 0.00 0.00 34.68 2.85
324 326 5.575218 CGGTAAAATTGCCTCATTTGGTAAC 59.425 40.000 0.00 0.00 34.68 2.50
326 328 5.010933 TCGGTAAAATTGCCTCATTTGGTA 58.989 37.500 0.00 0.00 0.00 3.25
328 330 4.448537 TCGGTAAAATTGCCTCATTTGG 57.551 40.909 0.00 0.00 0.00 3.28
329 331 4.864247 CCTTCGGTAAAATTGCCTCATTTG 59.136 41.667 0.00 0.00 0.00 2.32
332 334 3.023832 CCCTTCGGTAAAATTGCCTCAT 58.976 45.455 0.00 0.00 0.00 2.90
334 336 1.749063 CCCCTTCGGTAAAATTGCCTC 59.251 52.381 0.00 0.00 0.00 4.70
335 337 1.356398 TCCCCTTCGGTAAAATTGCCT 59.644 47.619 0.00 0.00 0.00 4.75
338 340 1.741145 CCGTCCCCTTCGGTAAAATTG 59.259 52.381 0.00 0.00 42.62 2.32
339 341 1.340308 CCCGTCCCCTTCGGTAAAATT 60.340 52.381 3.78 0.00 45.63 1.82
342 344 0.252012 TACCCGTCCCCTTCGGTAAA 60.252 55.000 3.78 0.00 45.63 2.01
343 345 0.252012 TTACCCGTCCCCTTCGGTAA 60.252 55.000 3.78 0.00 45.63 2.85
344 346 0.252012 TTTACCCGTCCCCTTCGGTA 60.252 55.000 3.78 0.00 45.63 4.02
345 347 0.911045 ATTTACCCGTCCCCTTCGGT 60.911 55.000 3.78 0.00 45.63 4.69
346 348 0.463116 CATTTACCCGTCCCCTTCGG 60.463 60.000 0.00 0.00 46.49 4.30
347 349 0.251073 ACATTTACCCGTCCCCTTCG 59.749 55.000 0.00 0.00 0.00 3.79
348 350 1.680860 CCACATTTACCCGTCCCCTTC 60.681 57.143 0.00 0.00 0.00 3.46
350 352 0.843343 ACCACATTTACCCGTCCCCT 60.843 55.000 0.00 0.00 0.00 4.79
351 353 0.038599 AACCACATTTACCCGTCCCC 59.961 55.000 0.00 0.00 0.00 4.81
352 354 2.358957 GTAACCACATTTACCCGTCCC 58.641 52.381 0.00 0.00 0.00 4.46
353 355 2.358957 GGTAACCACATTTACCCGTCC 58.641 52.381 1.21 0.00 43.73 4.79
376 378 4.376340 TTCTCGGTATTTCTCGGTAACC 57.624 45.455 0.00 0.00 0.00 2.85
377 379 6.419116 GGTATTTCTCGGTATTTCTCGGTAAC 59.581 42.308 0.00 0.00 0.00 2.50
378 380 6.096705 TGGTATTTCTCGGTATTTCTCGGTAA 59.903 38.462 0.00 0.00 0.00 2.85
379 381 5.593909 TGGTATTTCTCGGTATTTCTCGGTA 59.406 40.000 0.00 0.00 0.00 4.02
380 382 4.403432 TGGTATTTCTCGGTATTTCTCGGT 59.597 41.667 0.00 0.00 0.00 4.69
381 383 4.940463 TGGTATTTCTCGGTATTTCTCGG 58.060 43.478 0.00 0.00 0.00 4.63
383 385 8.664211 ATTCTTGGTATTTCTCGGTATTTCTC 57.336 34.615 0.00 0.00 0.00 2.87
388 390 9.204570 CGAAATATTCTTGGTATTTCTCGGTAT 57.795 33.333 13.53 0.00 42.35 2.73
389 391 8.415553 TCGAAATATTCTTGGTATTTCTCGGTA 58.584 33.333 13.53 0.00 42.35 4.02
390 392 7.270047 TCGAAATATTCTTGGTATTTCTCGGT 58.730 34.615 13.53 0.00 42.35 4.69
391 393 7.569591 GCTCGAAATATTCTTGGTATTTCTCGG 60.570 40.741 13.53 7.16 42.35 4.63
392 394 7.284351 GCTCGAAATATTCTTGGTATTTCTCG 58.716 38.462 13.53 5.73 42.35 4.04
393 395 7.169308 TCGCTCGAAATATTCTTGGTATTTCTC 59.831 37.037 13.53 5.41 42.35 2.87
394 396 6.984474 TCGCTCGAAATATTCTTGGTATTTCT 59.016 34.615 13.53 0.00 42.35 2.52
395 397 7.173863 TCGCTCGAAATATTCTTGGTATTTC 57.826 36.000 8.01 8.01 41.66 2.17
396 398 7.548196 TTCGCTCGAAATATTCTTGGTATTT 57.452 32.000 1.86 0.00 35.16 1.40
397 399 7.730364 ATTCGCTCGAAATATTCTTGGTATT 57.270 32.000 8.84 0.00 37.69 1.89
399 401 7.548196 AAATTCGCTCGAAATATTCTTGGTA 57.452 32.000 8.84 0.00 37.69 3.25
400 402 6.436843 AAATTCGCTCGAAATATTCTTGGT 57.563 33.333 8.84 0.00 37.69 3.67
410 412 9.834628 AAATTCAACTATAAAATTCGCTCGAAA 57.165 25.926 8.84 0.00 37.69 3.46
411 413 9.834628 AAAATTCAACTATAAAATTCGCTCGAA 57.165 25.926 7.19 7.19 38.59 3.71
413 415 9.272901 TCAAAATTCAACTATAAAATTCGCTCG 57.727 29.630 0.00 0.00 0.00 5.03
427 429 9.434420 TCACTTGTTTGAATTCAAAATTCAACT 57.566 25.926 30.07 17.30 46.08 3.16
434 436 8.881743 CCTTCATTCACTTGTTTGAATTCAAAA 58.118 29.630 30.07 17.55 46.08 2.44
437 439 7.345422 TCCTTCATTCACTTGTTTGAATTCA 57.655 32.000 3.38 3.38 42.45 2.57
438 440 8.822652 ATTCCTTCATTCACTTGTTTGAATTC 57.177 30.769 0.00 0.00 42.45 2.17
442 444 8.236586 CGAATATTCCTTCATTCACTTGTTTGA 58.763 33.333 9.87 0.00 31.86 2.69
443 445 8.236586 TCGAATATTCCTTCATTCACTTGTTTG 58.763 33.333 9.87 0.00 31.86 2.93
444 446 8.335532 TCGAATATTCCTTCATTCACTTGTTT 57.664 30.769 9.87 0.00 31.86 2.83
445 447 7.921786 TCGAATATTCCTTCATTCACTTGTT 57.078 32.000 9.87 0.00 31.86 2.83
447 449 7.148255 TGGTTCGAATATTCCTTCATTCACTTG 60.148 37.037 9.87 0.00 31.86 3.16
448 450 6.884295 TGGTTCGAATATTCCTTCATTCACTT 59.116 34.615 9.87 0.00 31.86 3.16
450 452 6.538742 TCTGGTTCGAATATTCCTTCATTCAC 59.461 38.462 9.87 0.00 31.86 3.18
454 456 6.284459 GTCTCTGGTTCGAATATTCCTTCAT 58.716 40.000 9.87 0.00 0.00 2.57
455 457 5.395324 GGTCTCTGGTTCGAATATTCCTTCA 60.395 44.000 9.87 3.25 0.00 3.02
456 458 5.051153 GGTCTCTGGTTCGAATATTCCTTC 58.949 45.833 9.87 0.69 0.00 3.46
457 459 4.717280 AGGTCTCTGGTTCGAATATTCCTT 59.283 41.667 9.87 0.00 0.00 3.36
460 462 5.067936 TGAGAGGTCTCTGGTTCGAATATTC 59.932 44.000 0.00 5.30 43.25 1.75
461 463 4.956700 TGAGAGGTCTCTGGTTCGAATATT 59.043 41.667 0.00 0.00 43.25 1.28
462 464 4.537751 TGAGAGGTCTCTGGTTCGAATAT 58.462 43.478 0.00 0.00 43.25 1.28
464 466 2.808919 TGAGAGGTCTCTGGTTCGAAT 58.191 47.619 0.00 0.00 43.25 3.34
466 468 2.287977 TTGAGAGGTCTCTGGTTCGA 57.712 50.000 5.09 0.00 43.25 3.71
467 469 3.060602 GTTTTGAGAGGTCTCTGGTTCG 58.939 50.000 5.09 0.00 43.25 3.95
468 470 4.061596 CTGTTTTGAGAGGTCTCTGGTTC 58.938 47.826 5.09 0.00 43.25 3.62
469 471 3.711704 TCTGTTTTGAGAGGTCTCTGGTT 59.288 43.478 5.09 0.00 43.25 3.67
470 472 3.309296 TCTGTTTTGAGAGGTCTCTGGT 58.691 45.455 5.09 0.00 43.25 4.00
472 474 5.363939 AGTTTCTGTTTTGAGAGGTCTCTG 58.636 41.667 5.09 0.00 43.25 3.35
473 475 5.622346 AGTTTCTGTTTTGAGAGGTCTCT 57.378 39.130 8.44 0.00 43.25 3.10
474 476 5.929415 CCTAGTTTCTGTTTTGAGAGGTCTC 59.071 44.000 0.00 0.00 43.15 3.36
476 478 5.612351 ACCTAGTTTCTGTTTTGAGAGGTC 58.388 41.667 0.00 0.00 0.00 3.85
478 480 5.278022 GCAACCTAGTTTCTGTTTTGAGAGG 60.278 44.000 0.00 0.00 0.00 3.69
481 483 5.757850 AGCAACCTAGTTTCTGTTTTGAG 57.242 39.130 0.00 0.00 0.00 3.02
482 484 6.995686 TGATAGCAACCTAGTTTCTGTTTTGA 59.004 34.615 0.00 0.00 0.00 2.69
483 485 7.202016 TGATAGCAACCTAGTTTCTGTTTTG 57.798 36.000 0.00 0.00 0.00 2.44
484 486 7.649057 GTTGATAGCAACCTAGTTTCTGTTTT 58.351 34.615 12.88 0.00 46.80 2.43
499 501 2.754552 GGTTCTGGCATGTTGATAGCAA 59.245 45.455 0.00 0.00 0.00 3.91
500 502 2.290832 TGGTTCTGGCATGTTGATAGCA 60.291 45.455 0.00 0.00 0.00 3.49
501 503 2.368439 TGGTTCTGGCATGTTGATAGC 58.632 47.619 0.00 0.00 0.00 2.97
502 504 5.359009 AGATTTGGTTCTGGCATGTTGATAG 59.641 40.000 0.00 0.00 0.00 2.08
504 506 4.091549 AGATTTGGTTCTGGCATGTTGAT 58.908 39.130 0.00 0.00 0.00 2.57
507 509 3.499338 TGAGATTTGGTTCTGGCATGTT 58.501 40.909 0.00 0.00 0.00 2.71
508 510 3.159213 TGAGATTTGGTTCTGGCATGT 57.841 42.857 0.00 0.00 0.00 3.21
509 511 3.181479 CCATGAGATTTGGTTCTGGCATG 60.181 47.826 0.00 0.00 32.09 4.06
512 514 1.135721 GCCATGAGATTTGGTTCTGGC 59.864 52.381 0.00 0.00 36.57 4.85
513 515 2.449464 TGCCATGAGATTTGGTTCTGG 58.551 47.619 0.00 0.00 36.57 3.86
514 516 4.730949 AATGCCATGAGATTTGGTTCTG 57.269 40.909 0.00 0.00 36.57 3.02
515 517 7.427989 AATTAATGCCATGAGATTTGGTTCT 57.572 32.000 0.00 0.00 36.57 3.01
516 518 8.632679 TCTAATTAATGCCATGAGATTTGGTTC 58.367 33.333 0.00 0.00 36.57 3.62
518 520 8.716674 ATCTAATTAATGCCATGAGATTTGGT 57.283 30.769 0.00 0.00 36.57 3.67
519 521 8.248945 GGATCTAATTAATGCCATGAGATTTGG 58.751 37.037 0.00 0.00 37.31 3.28
520 522 9.021807 AGGATCTAATTAATGCCATGAGATTTG 57.978 33.333 0.00 0.00 0.00 2.32
523 525 8.492782 CCTAGGATCTAATTAATGCCATGAGAT 58.507 37.037 1.05 0.00 0.00 2.75
524 526 7.459125 ACCTAGGATCTAATTAATGCCATGAGA 59.541 37.037 17.98 0.00 0.00 3.27
525 527 7.628234 ACCTAGGATCTAATTAATGCCATGAG 58.372 38.462 17.98 0.00 0.00 2.90
526 528 7.574021 ACCTAGGATCTAATTAATGCCATGA 57.426 36.000 17.98 0.00 0.00 3.07
527 529 8.543774 AGTACCTAGGATCTAATTAATGCCATG 58.456 37.037 17.98 0.00 0.00 3.66
528 530 8.686739 AGTACCTAGGATCTAATTAATGCCAT 57.313 34.615 17.98 0.00 0.00 4.40
529 531 8.506196 AAGTACCTAGGATCTAATTAATGCCA 57.494 34.615 17.98 0.00 0.00 4.92
540 542 8.848182 CGATTTACAGTAAAGTACCTAGGATCT 58.152 37.037 17.98 10.16 0.00 2.75
541 543 8.844244 TCGATTTACAGTAAAGTACCTAGGATC 58.156 37.037 17.98 7.82 0.00 3.36
542 544 8.757982 TCGATTTACAGTAAAGTACCTAGGAT 57.242 34.615 17.98 2.10 0.00 3.24
543 545 7.831193 ACTCGATTTACAGTAAAGTACCTAGGA 59.169 37.037 17.98 0.00 0.00 2.94
544 546 7.914346 CACTCGATTTACAGTAAAGTACCTAGG 59.086 40.741 7.41 7.41 0.00 3.02
545 547 8.457261 ACACTCGATTTACAGTAAAGTACCTAG 58.543 37.037 11.41 5.77 0.00 3.02
546 548 8.340618 ACACTCGATTTACAGTAAAGTACCTA 57.659 34.615 11.41 0.00 0.00 3.08
547 549 7.224522 ACACTCGATTTACAGTAAAGTACCT 57.775 36.000 11.41 0.00 0.00 3.08
548 550 7.880059 AACACTCGATTTACAGTAAAGTACC 57.120 36.000 11.41 1.05 0.00 3.34
602 604 1.846007 ATGGCCATACCGAGCAAAAA 58.154 45.000 19.18 0.00 43.94 1.94
603 605 1.846007 AATGGCCATACCGAGCAAAA 58.154 45.000 21.15 0.00 43.94 2.44
604 606 1.846007 AAATGGCCATACCGAGCAAA 58.154 45.000 21.15 0.00 43.94 3.68
605 607 2.092646 AGTAAATGGCCATACCGAGCAA 60.093 45.455 21.15 0.00 43.94 3.91
606 608 1.488812 AGTAAATGGCCATACCGAGCA 59.511 47.619 21.15 0.00 43.94 4.26
609 611 2.104111 CCTCAGTAAATGGCCATACCGA 59.896 50.000 21.15 11.40 43.94 4.69
610 612 2.494059 CCTCAGTAAATGGCCATACCG 58.506 52.381 21.15 7.12 43.94 4.02
612 614 2.863809 CCCCTCAGTAAATGGCCATAC 58.136 52.381 21.15 14.97 0.00 2.39
613 615 1.144913 GCCCCTCAGTAAATGGCCATA 59.855 52.381 21.15 0.00 36.07 2.74
614 616 0.106015 GCCCCTCAGTAAATGGCCAT 60.106 55.000 14.09 14.09 36.07 4.40
615 617 1.306296 GCCCCTCAGTAAATGGCCA 59.694 57.895 8.56 8.56 36.07 5.36
616 618 1.037579 GTGCCCCTCAGTAAATGGCC 61.038 60.000 0.00 0.00 41.46 5.36
617 619 1.376609 CGTGCCCCTCAGTAAATGGC 61.377 60.000 0.00 0.00 42.49 4.40
618 620 0.748005 CCGTGCCCCTCAGTAAATGG 60.748 60.000 0.00 0.00 0.00 3.16
619 621 0.251916 TCCGTGCCCCTCAGTAAATG 59.748 55.000 0.00 0.00 0.00 2.32
620 622 0.988832 TTCCGTGCCCCTCAGTAAAT 59.011 50.000 0.00 0.00 0.00 1.40
621 623 0.766131 TTTCCGTGCCCCTCAGTAAA 59.234 50.000 0.00 0.00 0.00 2.01
622 624 0.988832 ATTTCCGTGCCCCTCAGTAA 59.011 50.000 0.00 0.00 0.00 2.24
623 625 1.483415 GTATTTCCGTGCCCCTCAGTA 59.517 52.381 0.00 0.00 0.00 2.74
624 626 0.252197 GTATTTCCGTGCCCCTCAGT 59.748 55.000 0.00 0.00 0.00 3.41
625 627 0.810031 CGTATTTCCGTGCCCCTCAG 60.810 60.000 0.00 0.00 0.00 3.35
626 628 1.219664 CGTATTTCCGTGCCCCTCA 59.780 57.895 0.00 0.00 0.00 3.86
627 629 2.178235 GCGTATTTCCGTGCCCCTC 61.178 63.158 0.00 0.00 0.00 4.30
629 631 3.569690 CGCGTATTTCCGTGCCCC 61.570 66.667 0.00 0.00 0.00 5.80
630 632 2.904470 TACCGCGTATTTCCGTGCCC 62.904 60.000 4.92 0.00 37.03 5.36
631 633 1.083242 TTACCGCGTATTTCCGTGCC 61.083 55.000 4.92 0.00 37.03 5.01
632 634 0.025384 GTTACCGCGTATTTCCGTGC 59.975 55.000 4.92 0.00 37.03 5.34
633 635 0.646895 GGTTACCGCGTATTTCCGTG 59.353 55.000 4.92 0.00 38.04 4.94
635 637 1.259507 CATGGTTACCGCGTATTTCCG 59.740 52.381 4.92 0.00 0.00 4.30
636 638 1.600485 CCATGGTTACCGCGTATTTCC 59.400 52.381 4.92 1.35 0.00 3.13
637 639 1.600485 CCCATGGTTACCGCGTATTTC 59.400 52.381 11.73 0.00 0.00 2.17
638 640 1.209990 TCCCATGGTTACCGCGTATTT 59.790 47.619 11.73 0.00 0.00 1.40
639 641 0.831966 TCCCATGGTTACCGCGTATT 59.168 50.000 11.73 0.00 0.00 1.89
640 642 0.831966 TTCCCATGGTTACCGCGTAT 59.168 50.000 11.73 0.00 0.00 3.06
642 644 0.034863 ATTTCCCATGGTTACCGCGT 60.035 50.000 11.73 0.00 0.00 6.01
643 645 0.661020 GATTTCCCATGGTTACCGCG 59.339 55.000 11.73 0.00 0.00 6.46
646 648 5.993748 TTTCAAGATTTCCCATGGTTACC 57.006 39.130 11.73 0.00 0.00 2.85
647 649 7.275560 CGAAATTTCAAGATTTCCCATGGTTAC 59.724 37.037 17.99 0.00 41.02 2.50
648 650 7.177568 TCGAAATTTCAAGATTTCCCATGGTTA 59.822 33.333 17.99 0.00 41.02 2.85
649 651 6.014669 TCGAAATTTCAAGATTTCCCATGGTT 60.015 34.615 17.99 0.00 41.02 3.67
650 652 5.480073 TCGAAATTTCAAGATTTCCCATGGT 59.520 36.000 17.99 0.00 41.02 3.55
651 653 5.807011 GTCGAAATTTCAAGATTTCCCATGG 59.193 40.000 17.99 4.14 41.02 3.66
652 654 5.807011 GGTCGAAATTTCAAGATTTCCCATG 59.193 40.000 17.99 0.00 41.02 3.66
653 655 5.393027 CGGTCGAAATTTCAAGATTTCCCAT 60.393 40.000 17.99 0.00 41.02 4.00
655 657 4.412207 CGGTCGAAATTTCAAGATTTCCC 58.588 43.478 17.99 5.09 41.02 3.97
656 658 4.082949 ACCGGTCGAAATTTCAAGATTTCC 60.083 41.667 17.99 5.39 41.02 3.13
657 659 5.043189 ACCGGTCGAAATTTCAAGATTTC 57.957 39.130 17.99 0.00 40.80 2.17
658 660 6.376177 GTTACCGGTCGAAATTTCAAGATTT 58.624 36.000 12.40 0.99 32.16 2.17
659 661 5.106436 GGTTACCGGTCGAAATTTCAAGATT 60.106 40.000 12.40 0.52 0.00 2.40
660 662 4.393990 GGTTACCGGTCGAAATTTCAAGAT 59.606 41.667 12.40 1.22 0.00 2.40
661 663 3.747529 GGTTACCGGTCGAAATTTCAAGA 59.252 43.478 12.40 5.43 0.00 3.02
662 664 3.499157 TGGTTACCGGTCGAAATTTCAAG 59.501 43.478 12.40 3.07 0.00 3.02
663 665 3.474600 TGGTTACCGGTCGAAATTTCAA 58.525 40.909 12.40 0.00 0.00 2.69
665 667 4.486574 TTTGGTTACCGGTCGAAATTTC 57.513 40.909 12.40 8.20 0.00 2.17
668 670 2.553602 GGTTTTGGTTACCGGTCGAAAT 59.446 45.455 12.40 0.00 0.00 2.17
669 671 1.946081 GGTTTTGGTTACCGGTCGAAA 59.054 47.619 12.40 6.74 0.00 3.46
671 673 0.758123 AGGTTTTGGTTACCGGTCGA 59.242 50.000 12.40 0.00 40.69 4.20
672 674 1.264826 CAAGGTTTTGGTTACCGGTCG 59.735 52.381 12.40 0.00 40.69 4.79
674 676 1.034356 GCAAGGTTTTGGTTACCGGT 58.966 50.000 13.98 13.98 40.69 5.28
675 677 1.268625 GAGCAAGGTTTTGGTTACCGG 59.731 52.381 0.00 0.00 44.54 5.28
676 678 2.031157 CAGAGCAAGGTTTTGGTTACCG 60.031 50.000 0.00 0.00 44.54 4.02
684 686 2.177016 AGGTTACCCAGAGCAAGGTTTT 59.823 45.455 0.00 0.00 37.59 2.43
685 687 1.780919 AGGTTACCCAGAGCAAGGTTT 59.219 47.619 0.00 0.00 37.59 3.27
686 688 1.446016 AGGTTACCCAGAGCAAGGTT 58.554 50.000 0.00 0.00 37.59 3.50
687 689 2.305052 GTTAGGTTACCCAGAGCAAGGT 59.695 50.000 0.00 0.00 40.31 3.50
688 690 2.304761 TGTTAGGTTACCCAGAGCAAGG 59.695 50.000 0.00 0.00 0.00 3.61
689 691 3.008049 ACTGTTAGGTTACCCAGAGCAAG 59.992 47.826 12.00 0.00 0.00 4.01
690 692 2.976882 ACTGTTAGGTTACCCAGAGCAA 59.023 45.455 12.00 0.00 0.00 3.91
692 694 2.302157 ACACTGTTAGGTTACCCAGAGC 59.698 50.000 12.00 0.00 0.00 4.09
710 712 6.872020 TGGCTAATGTCAAGAGTAGTTAACAC 59.128 38.462 8.61 4.37 0.00 3.32
800 802 3.426159 CCGCTTAATGTGTTGGTGCTTAG 60.426 47.826 0.00 0.00 0.00 2.18
802 804 1.269448 CCGCTTAATGTGTTGGTGCTT 59.731 47.619 0.00 0.00 0.00 3.91
803 805 0.881118 CCGCTTAATGTGTTGGTGCT 59.119 50.000 0.00 0.00 0.00 4.40
804 806 0.732538 GCCGCTTAATGTGTTGGTGC 60.733 55.000 0.00 0.00 0.00 5.01
805 807 0.595588 TGCCGCTTAATGTGTTGGTG 59.404 50.000 0.00 0.00 0.00 4.17
806 808 0.596082 GTGCCGCTTAATGTGTTGGT 59.404 50.000 0.00 0.00 0.00 3.67
807 809 0.595588 TGTGCCGCTTAATGTGTTGG 59.404 50.000 0.00 0.00 0.00 3.77
810 812 2.422127 GGTATTGTGCCGCTTAATGTGT 59.578 45.455 0.00 0.00 0.00 3.72
811 813 2.421775 TGGTATTGTGCCGCTTAATGTG 59.578 45.455 0.00 0.00 0.00 3.21
812 814 2.717390 TGGTATTGTGCCGCTTAATGT 58.283 42.857 0.00 0.00 0.00 2.71
815 817 4.299978 GTTTTTGGTATTGTGCCGCTTAA 58.700 39.130 0.00 0.00 0.00 1.85
817 819 2.547007 GGTTTTTGGTATTGTGCCGCTT 60.547 45.455 0.00 0.00 0.00 4.68
818 820 1.000394 GGTTTTTGGTATTGTGCCGCT 60.000 47.619 0.00 0.00 0.00 5.52
819 821 1.000394 AGGTTTTTGGTATTGTGCCGC 60.000 47.619 0.00 0.00 0.00 6.53
820 822 3.056304 CAAGGTTTTTGGTATTGTGCCG 58.944 45.455 0.00 0.00 0.00 5.69
821 823 3.070302 TCCAAGGTTTTTGGTATTGTGCC 59.930 43.478 5.89 0.00 40.40 5.01
822 824 4.329462 TCCAAGGTTTTTGGTATTGTGC 57.671 40.909 5.89 0.00 40.40 4.57
823 825 7.800155 AATTTCCAAGGTTTTTGGTATTGTG 57.200 32.000 5.89 0.00 40.40 3.33
824 826 8.049721 TCAAATTTCCAAGGTTTTTGGTATTGT 58.950 29.630 5.89 0.00 40.40 2.71
825 827 8.341903 GTCAAATTTCCAAGGTTTTTGGTATTG 58.658 33.333 5.89 7.32 40.40 1.90
826 828 7.500892 GGTCAAATTTCCAAGGTTTTTGGTATT 59.499 33.333 5.89 5.03 40.40 1.89
828 830 6.350103 GGTCAAATTTCCAAGGTTTTTGGTA 58.650 36.000 5.89 0.00 40.40 3.25
829 831 5.189928 GGTCAAATTTCCAAGGTTTTTGGT 58.810 37.500 5.89 0.00 40.40 3.67
830 832 4.578516 GGGTCAAATTTCCAAGGTTTTTGG 59.421 41.667 0.00 0.00 40.87 3.28
831 833 5.189180 TGGGTCAAATTTCCAAGGTTTTTG 58.811 37.500 0.00 0.00 0.00 2.44
832 834 5.443230 TGGGTCAAATTTCCAAGGTTTTT 57.557 34.783 0.00 0.00 0.00 1.94
834 836 4.473196 AGTTGGGTCAAATTTCCAAGGTTT 59.527 37.500 9.47 0.00 40.71 3.27
837 839 5.799827 TTAGTTGGGTCAAATTTCCAAGG 57.200 39.130 9.47 0.00 40.71 3.61
838 840 9.942850 AATATTTAGTTGGGTCAAATTTCCAAG 57.057 29.630 9.47 0.00 40.71 3.61
847 849 9.974980 GAGAAACAAAATATTTAGTTGGGTCAA 57.025 29.630 0.01 0.00 0.00 3.18
848 850 8.581578 GGAGAAACAAAATATTTAGTTGGGTCA 58.418 33.333 0.01 0.00 0.00 4.02
850 852 8.485578 TGGAGAAACAAAATATTTAGTTGGGT 57.514 30.769 0.01 0.00 0.00 4.51
860 862 9.185680 GGTGGTTACTATGGAGAAACAAAATAT 57.814 33.333 0.00 0.00 0.00 1.28
861 863 8.387813 AGGTGGTTACTATGGAGAAACAAAATA 58.612 33.333 0.00 0.00 0.00 1.40
863 865 6.607019 AGGTGGTTACTATGGAGAAACAAAA 58.393 36.000 0.00 0.00 0.00 2.44
864 866 6.195600 AGGTGGTTACTATGGAGAAACAAA 57.804 37.500 0.00 0.00 0.00 2.83
865 867 5.836024 AGGTGGTTACTATGGAGAAACAA 57.164 39.130 0.00 0.00 0.00 2.83
866 868 5.836024 AAGGTGGTTACTATGGAGAAACA 57.164 39.130 0.00 0.00 0.00 2.83
868 870 6.442541 TGAAAGGTGGTTACTATGGAGAAA 57.557 37.500 0.00 0.00 0.00 2.52
869 871 6.049955 CTGAAAGGTGGTTACTATGGAGAA 57.950 41.667 0.00 0.00 0.00 2.87
870 872 5.677319 CTGAAAGGTGGTTACTATGGAGA 57.323 43.478 0.00 0.00 0.00 3.71
886 888 5.693769 TCTTGGGGTATAGTTCCTGAAAG 57.306 43.478 0.00 0.00 0.00 2.62
887 889 5.550403 AGTTCTTGGGGTATAGTTCCTGAAA 59.450 40.000 0.00 0.00 0.00 2.69
888 890 5.098663 AGTTCTTGGGGTATAGTTCCTGAA 58.901 41.667 0.00 0.00 0.00 3.02
890 892 5.070580 CCTAGTTCTTGGGGTATAGTTCCTG 59.929 48.000 0.00 0.00 0.00 3.86
891 893 5.217400 CCTAGTTCTTGGGGTATAGTTCCT 58.783 45.833 0.00 0.00 0.00 3.36
892 894 4.202336 GCCTAGTTCTTGGGGTATAGTTCC 60.202 50.000 2.92 0.00 0.00 3.62
895 897 3.967987 CTGCCTAGTTCTTGGGGTATAGT 59.032 47.826 2.92 0.00 0.00 2.12
896 898 3.325135 CCTGCCTAGTTCTTGGGGTATAG 59.675 52.174 2.92 0.00 0.00 1.31
897 899 3.314693 CCTGCCTAGTTCTTGGGGTATA 58.685 50.000 2.92 0.00 0.00 1.47
899 901 1.580059 CCTGCCTAGTTCTTGGGGTA 58.420 55.000 2.92 0.00 0.00 3.69
900 902 1.853250 GCCTGCCTAGTTCTTGGGGT 61.853 60.000 2.92 0.00 0.00 4.95
901 903 1.077429 GCCTGCCTAGTTCTTGGGG 60.077 63.158 2.92 0.00 0.00 4.96
902 904 0.393537 CAGCCTGCCTAGTTCTTGGG 60.394 60.000 2.92 0.00 0.00 4.12
903 905 0.393537 CCAGCCTGCCTAGTTCTTGG 60.394 60.000 0.00 0.00 0.00 3.61
904 906 0.326264 ACCAGCCTGCCTAGTTCTTG 59.674 55.000 0.00 0.00 0.00 3.02
905 907 0.615850 GACCAGCCTGCCTAGTTCTT 59.384 55.000 0.00 0.00 0.00 2.52
906 908 1.268283 GGACCAGCCTGCCTAGTTCT 61.268 60.000 0.00 0.00 0.00 3.01
907 909 1.222113 GGACCAGCCTGCCTAGTTC 59.778 63.158 0.00 0.00 0.00 3.01
908 910 0.916358 ATGGACCAGCCTGCCTAGTT 60.916 55.000 0.00 0.00 37.63 2.24
909 911 0.916358 AATGGACCAGCCTGCCTAGT 60.916 55.000 0.00 0.00 37.63 2.57
910 912 0.257039 AAATGGACCAGCCTGCCTAG 59.743 55.000 0.00 0.00 37.63 3.02
911 913 0.034186 CAAATGGACCAGCCTGCCTA 60.034 55.000 0.00 0.00 37.63 3.93
913 915 3.010413 GCAAATGGACCAGCCTGCC 62.010 63.158 12.20 0.00 37.63 4.85
915 917 0.680618 TTTGCAAATGGACCAGCCTG 59.319 50.000 8.05 0.00 37.63 4.85
916 918 1.345415 CTTTTGCAAATGGACCAGCCT 59.655 47.619 13.65 0.00 37.63 4.58
917 919 1.799544 CTTTTGCAAATGGACCAGCC 58.200 50.000 13.65 0.00 37.10 4.85
918 920 1.150827 GCTTTTGCAAATGGACCAGC 58.849 50.000 22.28 18.12 46.58 4.85
945 947 7.773489 TGGACCTGAAAATTCATTTACATGA 57.227 32.000 0.00 0.00 37.67 3.07
946 948 9.439500 AATTGGACCTGAAAATTCATTTACATG 57.561 29.630 0.00 0.00 36.46 3.21
948 950 8.093927 GGAATTGGACCTGAAAATTCATTTACA 58.906 33.333 13.94 0.00 40.49 2.41
952 954 6.684897 TGGAATTGGACCTGAAAATTCATT 57.315 33.333 13.94 0.00 40.49 2.57
955 957 7.928167 GGATATTGGAATTGGACCTGAAAATTC 59.072 37.037 6.50 6.50 38.84 2.17
957 959 6.902416 TGGATATTGGAATTGGACCTGAAAAT 59.098 34.615 0.00 0.00 0.00 1.82
959 961 5.836705 TGGATATTGGAATTGGACCTGAAA 58.163 37.500 0.00 0.00 0.00 2.69
960 962 5.464588 TGGATATTGGAATTGGACCTGAA 57.535 39.130 0.00 0.00 0.00 3.02
961 963 5.668135 ATGGATATTGGAATTGGACCTGA 57.332 39.130 0.00 0.00 0.00 3.86
962 964 6.777091 TGTTATGGATATTGGAATTGGACCTG 59.223 38.462 0.00 0.00 0.00 4.00
963 965 6.921412 TGTTATGGATATTGGAATTGGACCT 58.079 36.000 0.00 0.00 0.00 3.85
964 966 7.595819 TTGTTATGGATATTGGAATTGGACC 57.404 36.000 0.00 0.00 0.00 4.46
966 968 9.659135 AGATTTGTTATGGATATTGGAATTGGA 57.341 29.630 0.00 0.00 0.00 3.53
985 987 9.561069 AAGTGTGTTCATCTTAGTAAGATTTGT 57.439 29.630 20.59 0.54 45.75 2.83
997 999 6.071334 TCGGAGAGAATAAGTGTGTTCATCTT 60.071 38.462 0.00 0.00 0.00 2.40
998 1000 5.419155 TCGGAGAGAATAAGTGTGTTCATCT 59.581 40.000 0.00 0.00 0.00 2.90
999 1001 5.651530 TCGGAGAGAATAAGTGTGTTCATC 58.348 41.667 0.00 0.00 0.00 2.92
1001 1003 5.661056 ATCGGAGAGAATAAGTGTGTTCA 57.339 39.130 0.00 0.00 43.63 3.18
1013 1015 6.283694 CCTGTGATTTGATTATCGGAGAGAA 58.716 40.000 0.00 0.00 43.82 2.87
1015 1017 4.450419 GCCTGTGATTTGATTATCGGAGAG 59.550 45.833 0.00 0.00 43.63 3.20
1016 1018 4.380531 GCCTGTGATTTGATTATCGGAGA 58.619 43.478 0.00 0.00 45.75 3.71
1019 1021 2.554032 GGGCCTGTGATTTGATTATCGG 59.446 50.000 0.84 0.00 0.00 4.18
1020 1022 3.213506 TGGGCCTGTGATTTGATTATCG 58.786 45.455 4.53 0.00 0.00 2.92
1023 1025 4.892934 GGTATTGGGCCTGTGATTTGATTA 59.107 41.667 4.53 0.00 0.00 1.75
1024 1026 3.706086 GGTATTGGGCCTGTGATTTGATT 59.294 43.478 4.53 0.00 0.00 2.57
1026 1028 2.311542 AGGTATTGGGCCTGTGATTTGA 59.688 45.455 4.53 0.00 34.56 2.69
1027 1029 2.689983 GAGGTATTGGGCCTGTGATTTG 59.310 50.000 4.53 0.00 36.29 2.32
1028 1030 2.358195 GGAGGTATTGGGCCTGTGATTT 60.358 50.000 4.53 0.00 36.29 2.17
1029 1031 1.215423 GGAGGTATTGGGCCTGTGATT 59.785 52.381 4.53 0.00 36.29 2.57
1030 1032 0.846693 GGAGGTATTGGGCCTGTGAT 59.153 55.000 4.53 0.00 36.29 3.06
1032 1034 0.107017 CTGGAGGTATTGGGCCTGTG 60.107 60.000 4.53 0.00 36.29 3.66
1033 1035 0.253160 TCTGGAGGTATTGGGCCTGT 60.253 55.000 4.53 0.00 36.29 4.00
1037 1039 2.104963 CCTAGTTCTGGAGGTATTGGGC 59.895 54.545 0.00 0.00 0.00 5.36
1040 1042 4.192317 GTTGCCTAGTTCTGGAGGTATTG 58.808 47.826 0.00 0.00 35.08 1.90
1043 1045 2.185387 GGTTGCCTAGTTCTGGAGGTA 58.815 52.381 0.00 0.00 35.08 3.08
1045 1047 1.208293 GAGGTTGCCTAGTTCTGGAGG 59.792 57.143 0.00 0.00 31.76 4.30
1046 1048 1.208293 GGAGGTTGCCTAGTTCTGGAG 59.792 57.143 0.00 0.00 31.76 3.86
1047 1049 1.276622 GGAGGTTGCCTAGTTCTGGA 58.723 55.000 0.00 0.00 31.76 3.86
1048 1050 0.253327 GGGAGGTTGCCTAGTTCTGG 59.747 60.000 0.00 0.00 31.76 3.86
1049 1051 1.280457 AGGGAGGTTGCCTAGTTCTG 58.720 55.000 0.00 0.00 35.97 3.02
1050 1052 2.942604 TAGGGAGGTTGCCTAGTTCT 57.057 50.000 0.00 0.00 39.62 3.01
1052 1054 1.490910 GCATAGGGAGGTTGCCTAGTT 59.509 52.381 2.81 0.00 43.85 2.24
1054 1056 1.428869 AGCATAGGGAGGTTGCCTAG 58.571 55.000 2.81 0.00 43.85 3.02
1055 1057 2.787339 TAGCATAGGGAGGTTGCCTA 57.213 50.000 0.00 0.00 44.73 3.93
1057 1059 2.298610 GTTTAGCATAGGGAGGTTGCC 58.701 52.381 0.00 0.00 37.07 4.52
1059 1061 3.644966 TGGTTTAGCATAGGGAGGTTG 57.355 47.619 0.00 0.00 0.00 3.77
1062 1064 3.933861 AGTTGGTTTAGCATAGGGAGG 57.066 47.619 0.00 0.00 0.00 4.30
1063 1065 5.239525 GCATAAGTTGGTTTAGCATAGGGAG 59.760 44.000 0.00 0.00 0.00 4.30
1064 1066 5.104109 AGCATAAGTTGGTTTAGCATAGGGA 60.104 40.000 0.00 0.00 29.87 4.20
1065 1067 5.133221 AGCATAAGTTGGTTTAGCATAGGG 58.867 41.667 0.00 0.00 29.87 3.53
1066 1068 6.058183 AGAGCATAAGTTGGTTTAGCATAGG 58.942 40.000 0.00 0.00 35.82 2.57
1067 1069 7.171678 GGTAGAGCATAAGTTGGTTTAGCATAG 59.828 40.741 0.00 0.00 39.42 2.23
1069 1071 5.823045 GGTAGAGCATAAGTTGGTTTAGCAT 59.177 40.000 0.00 0.00 39.42 3.79
1070 1072 5.183228 GGTAGAGCATAAGTTGGTTTAGCA 58.817 41.667 0.00 0.00 39.42 3.49
1072 1074 7.681939 TTTGGTAGAGCATAAGTTGGTTTAG 57.318 36.000 0.00 0.00 35.82 1.85
1073 1075 8.644374 ATTTTGGTAGAGCATAAGTTGGTTTA 57.356 30.769 0.00 0.00 35.82 2.01
1074 1076 6.969993 TTTTGGTAGAGCATAAGTTGGTTT 57.030 33.333 0.00 0.00 35.82 3.27
1075 1077 6.719370 TGATTTTGGTAGAGCATAAGTTGGTT 59.281 34.615 0.00 0.00 35.82 3.67
1076 1078 6.245408 TGATTTTGGTAGAGCATAAGTTGGT 58.755 36.000 0.00 0.00 39.22 3.67
1077 1079 6.757897 TGATTTTGGTAGAGCATAAGTTGG 57.242 37.500 0.00 0.00 0.00 3.77
1078 1080 9.294030 GATTTGATTTTGGTAGAGCATAAGTTG 57.706 33.333 0.00 0.00 0.00 3.16
1080 1082 8.579850 TGATTTGATTTTGGTAGAGCATAAGT 57.420 30.769 0.00 0.00 0.00 2.24
1083 1085 9.288576 CCTATGATTTGATTTTGGTAGAGCATA 57.711 33.333 0.00 0.00 0.00 3.14
1085 1087 6.039717 GCCTATGATTTGATTTTGGTAGAGCA 59.960 38.462 0.00 0.00 0.00 4.26
1086 1088 6.264067 AGCCTATGATTTGATTTTGGTAGAGC 59.736 38.462 0.00 0.00 0.00 4.09
1089 1091 7.572523 TGAGCCTATGATTTGATTTTGGTAG 57.427 36.000 0.00 0.00 0.00 3.18
1090 1092 7.953005 TTGAGCCTATGATTTGATTTTGGTA 57.047 32.000 0.00 0.00 0.00 3.25
1093 1095 7.869429 GGGTATTGAGCCTATGATTTGATTTTG 59.131 37.037 0.00 0.00 40.35 2.44
1094 1096 7.564660 TGGGTATTGAGCCTATGATTTGATTTT 59.435 33.333 0.00 0.00 44.19 1.82
1096 1098 6.491403 GTGGGTATTGAGCCTATGATTTGATT 59.509 38.462 0.00 0.00 44.19 2.57
1131 5910 6.067217 AGGTTATTGAGCATAGTGAGGTTT 57.933 37.500 0.00 0.00 0.00 3.27
1309 6088 6.410388 GGGATGGGACCAGTTATCTGATTAAA 60.410 42.308 2.20 0.00 43.76 1.52
1423 6202 5.687780 TGTCAGATCATGGATACTTTGCAT 58.312 37.500 0.00 0.00 36.74 3.96
1460 6239 5.127693 CGGAGGAAGATAACCTGATAGTG 57.872 47.826 0.00 0.00 37.93 2.74
1481 6260 4.527564 GTTTGTGAGATTGTCAAACTCCG 58.472 43.478 17.42 0.00 43.94 4.63
1482 6261 4.580580 AGGTTTGTGAGATTGTCAAACTCC 59.419 41.667 17.42 10.78 45.49 3.85
1490 6269 7.823745 AGATTAACAAGGTTTGTGAGATTGT 57.176 32.000 0.00 0.00 44.59 2.71
1491 6270 9.185192 GAAAGATTAACAAGGTTTGTGAGATTG 57.815 33.333 0.00 0.00 44.59 2.67
1531 6310 3.790089 AGGTAAAGGTCCTGAAAGTGG 57.210 47.619 0.00 0.00 33.62 4.00
1597 6376 3.926198 TGGGGCCATTGAACATATCATT 58.074 40.909 4.39 0.00 38.03 2.57
1600 6379 3.259123 GGAATGGGGCCATTGAACATATC 59.741 47.826 4.39 0.00 45.50 1.63
1650 6429 7.888021 TGGTTCCATTGAATGTCAACTATAACT 59.112 33.333 13.63 0.00 39.45 2.24
1655 6434 6.068010 AGTTGGTTCCATTGAATGTCAACTA 58.932 36.000 20.69 12.30 41.57 2.24
1657 6436 5.200368 AGTTGGTTCCATTGAATGTCAAC 57.800 39.130 15.97 15.97 39.45 3.18
1850 6633 4.098914 ACTGCTAGGTTGGACAATTTGA 57.901 40.909 2.79 0.00 0.00 2.69
1868 6651 9.781834 GATGATTAGAATCGAATCCTAGTACTG 57.218 37.037 12.38 0.00 38.26 2.74
1992 6776 9.722184 AGGTATTGAAGACTACTTAACTTTTCC 57.278 33.333 0.00 0.00 36.39 3.13
2056 6840 2.573462 TCTTGCATGCTCCTAGTTCCTT 59.427 45.455 20.33 0.00 0.00 3.36
2075 6862 8.383175 TGTTGATCTTTAGGGACAATAGTTTCT 58.617 33.333 0.00 0.00 0.00 2.52
2120 6907 0.611618 TCCAATCGCACCAGGCAAAT 60.612 50.000 0.00 0.00 45.17 2.32
2147 6935 2.196997 TAACCGCATCTGCAGGCCTT 62.197 55.000 15.13 5.91 42.21 4.35
2160 6948 0.740868 TGCAGCTCACATCTAACCGC 60.741 55.000 0.00 0.00 0.00 5.68
2162 6950 4.035675 GGTTATTGCAGCTCACATCTAACC 59.964 45.833 15.47 15.47 32.83 2.85
2251 7039 3.490419 GGAATGCTGCCATTGAACTGATC 60.490 47.826 0.00 0.00 41.60 2.92
2298 7086 6.826231 TGTAGGACACATCAAGTTTTGAAAGA 59.174 34.615 0.00 0.00 43.95 2.52
2306 7094 5.437060 AGTTGTTGTAGGACACATCAAGTT 58.563 37.500 2.08 0.00 43.36 2.66
2421 9379 6.426646 AGAGTTGAATAACAAGGAGTCAGT 57.573 37.500 0.00 0.00 39.30 3.41
2446 9404 1.021968 GGTTTATGGCGGCCAACTAG 58.978 55.000 27.70 0.00 36.95 2.57
2456 9417 4.332828 ACCAAGTGTCTTAGGTTTATGGC 58.667 43.478 0.00 0.00 0.00 4.40
2465 9426 4.504097 GCAAAAGCAAACCAAGTGTCTTAG 59.496 41.667 0.00 0.00 0.00 2.18
2466 9427 4.429108 GCAAAAGCAAACCAAGTGTCTTA 58.571 39.130 0.00 0.00 0.00 2.10
2492 9453 1.064952 CGAAACCCACCACAAGAACAC 59.935 52.381 0.00 0.00 0.00 3.32
2562 9523 3.013921 TGTGACACCTTCTTGTGGTTTC 58.986 45.455 2.45 0.00 40.62 2.78
2583 9544 4.917906 AAATAGGTCTCTTGGTTCAGCT 57.082 40.909 0.00 0.00 0.00 4.24
2590 9551 6.003950 TCCAAACAGAAAATAGGTCTCTTGG 58.996 40.000 0.00 0.00 36.91 3.61
2658 9619 3.117507 CGTACTTGTCGTTGAAGTCTTCG 59.882 47.826 8.06 0.00 35.30 3.79
2680 9641 2.159226 CGTATCCTCCTGTTCCAGTGAC 60.159 54.545 0.00 0.00 0.00 3.67
2684 9645 0.105039 GCCGTATCCTCCTGTTCCAG 59.895 60.000 0.00 0.00 0.00 3.86
2762 9723 4.559502 CGTCATCCAACTCTTCTTCAGTCA 60.560 45.833 0.00 0.00 0.00 3.41
2832 9793 4.266029 CCATACATTTTGACAATGCTTCGC 59.734 41.667 0.00 0.00 0.00 4.70
2893 9854 1.753073 GCTGCCCTGCTCAATGTAATT 59.247 47.619 0.00 0.00 36.63 1.40
2895 9856 0.680921 GGCTGCCCTGCTCAATGTAA 60.681 55.000 7.66 0.00 0.00 2.41
2918 9879 3.091545 TCCTCATTTTCCAATGTCCTGC 58.908 45.455 0.00 0.00 40.78 4.85
3089 10050 2.031508 GTGCCGAAATCCGAGACAAAAA 60.032 45.455 0.00 0.00 41.76 1.94
3248 10219 5.940192 TCTGCACAGAATCAAAACGTTAT 57.060 34.783 0.00 0.00 33.91 1.89
3289 10265 4.240888 AGACATCACATTTCTCAGTCACG 58.759 43.478 0.00 0.00 0.00 4.35
3395 10389 3.119029 GCCGGCCGTTGGTCTATAATATA 60.119 47.826 26.12 0.00 0.00 0.86
3401 10395 2.961893 TTGCCGGCCGTTGGTCTAT 61.962 57.895 26.77 0.00 0.00 1.98
3424 10418 9.103861 GCTAAGCTATTCTCTTCTGTTGTTATT 57.896 33.333 0.00 0.00 0.00 1.40
3425 10419 8.482128 AGCTAAGCTATTCTCTTCTGTTGTTAT 58.518 33.333 0.00 0.00 36.99 1.89
3426 10420 7.841956 AGCTAAGCTATTCTCTTCTGTTGTTA 58.158 34.615 0.00 0.00 36.99 2.41
3568 10569 6.480524 TGCTGTAATGTAAGTGCACTAAAG 57.519 37.500 22.01 8.87 0.00 1.85
3639 10813 5.106908 GCTTCCGCAATGATAGACCTAAATC 60.107 44.000 0.00 0.00 35.78 2.17
3640 10814 4.757149 GCTTCCGCAATGATAGACCTAAAT 59.243 41.667 0.00 0.00 35.78 1.40
3641 10815 4.127171 GCTTCCGCAATGATAGACCTAAA 58.873 43.478 0.00 0.00 35.78 1.85
3642 10816 3.494398 GGCTTCCGCAATGATAGACCTAA 60.494 47.826 0.00 0.00 38.10 2.69
3643 10817 2.037251 GGCTTCCGCAATGATAGACCTA 59.963 50.000 0.00 0.00 38.10 3.08
3741 10919 8.922738 TTTCGCTAGAAATAAAACTTACAACG 57.077 30.769 0.00 0.00 41.06 4.10
3835 11080 2.280389 CCATCCCACGAGGCGATG 60.280 66.667 17.40 17.40 39.93 3.84
3862 11107 2.022240 GCTCTAAGCCGCTACAGCCT 62.022 60.000 0.00 0.00 34.48 4.58
3889 11134 0.541863 ATCCCACGTCCCTTGATCAC 59.458 55.000 0.00 0.00 0.00 3.06
3980 11226 9.914131 GCTTTGTTCTCCTCTTTATTTAAACAT 57.086 29.630 0.00 0.00 0.00 2.71
4312 13254 4.107622 CCATTTCAATCTCGCCAATCAAC 58.892 43.478 0.00 0.00 0.00 3.18
4359 13711 3.084039 TCATCTGGGACTTTGCATGAAC 58.916 45.455 0.00 0.00 0.00 3.18
4383 13775 3.760580 AGCTTAGCTCTCACTGTTGTT 57.239 42.857 0.00 0.00 30.62 2.83
4565 13991 8.178313 TCATATATCACTACCAGTCGTTGAAT 57.822 34.615 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.