Multiple sequence alignment - TraesCS1B01G009600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G009600 chr1B 100.000 5297 0 0 1 5297 4792410 4787114 0.000000e+00 9782.0
1 TraesCS1B01G009600 chr1B 94.423 5003 209 29 322 5297 4084228 4089187 0.000000e+00 7629.0
2 TraesCS1B01G009600 chr1B 100.000 2765 0 0 5518 8282 4786893 4784129 0.000000e+00 5107.0
3 TraesCS1B01G009600 chr1B 96.714 2769 69 14 5518 8280 4089204 4091956 0.000000e+00 4590.0
4 TraesCS1B01G009600 chr1B 97.208 788 17 2 4510 5297 4794000 4793218 0.000000e+00 1328.0
5 TraesCS1B01G009600 chr1B 99.043 627 4 2 5518 6143 4793212 4792587 0.000000e+00 1123.0
6 TraesCS1B01G009600 chr1B 94.737 304 9 6 8 308 4083578 4083877 4.530000e-127 466.0
7 TraesCS1B01G009600 chr1B 95.322 171 7 1 3981 4151 4788260 4788091 3.810000e-68 270.0
8 TraesCS1B01G009600 chr1B 95.322 171 7 1 4151 4320 4788430 4788260 3.810000e-68 270.0
9 TraesCS1B01G009600 chr1B 92.398 171 13 0 3981 4151 4088044 4088214 2.310000e-60 244.0
10 TraesCS1B01G009600 chr1B 85.567 97 13 1 270 365 4792046 4791950 5.290000e-17 100.0
11 TraesCS1B01G009600 chr1B 85.567 97 13 1 365 461 4792141 4792046 5.290000e-17 100.0
12 TraesCS1B01G009600 chrUn 85.127 1412 194 13 6043 7448 279471914 279473315 0.000000e+00 1430.0
13 TraesCS1B01G009600 chrUn 85.007 1414 194 14 6043 7448 279436250 279437653 0.000000e+00 1421.0
14 TraesCS1B01G009600 chrUn 84.397 987 135 8 941 1927 279433599 279434566 0.000000e+00 952.0
15 TraesCS1B01G009600 chrUn 84.397 987 135 8 941 1927 279469263 279470230 0.000000e+00 952.0
16 TraesCS1B01G009600 chr1A 85.007 1414 194 14 6043 7448 2937267 2938670 0.000000e+00 1421.0
17 TraesCS1B01G009600 chr1A 84.397 987 135 8 941 1927 2934616 2935583 0.000000e+00 952.0
18 TraesCS1B01G009600 chr1A 85.548 429 62 0 3723 4151 5613152 5612724 4.560000e-122 449.0
19 TraesCS1B01G009600 chr1A 83.467 375 58 3 4153 4526 5612892 5612521 6.150000e-91 346.0
20 TraesCS1B01G009600 chr1A 76.504 349 57 19 2624 2954 488096667 488097008 5.140000e-37 167.0
21 TraesCS1B01G009600 chr1A 84.177 158 24 1 1932 2089 21039719 21039563 1.440000e-32 152.0
22 TraesCS1B01G009600 chr1A 84.000 125 16 2 4027 4151 510318941 510318821 5.250000e-22 117.0
23 TraesCS1B01G009600 chr2A 84.832 1279 179 13 6032 7305 624966644 624965376 0.000000e+00 1273.0
24 TraesCS1B01G009600 chr2A 84.441 1234 173 17 6073 7298 711466811 711465589 0.000000e+00 1197.0
25 TraesCS1B01G009600 chr2D 85.004 1227 179 5 6043 7267 626593931 626592708 0.000000e+00 1242.0
26 TraesCS1B01G009600 chr2D 84.809 1231 172 13 6073 7298 572256150 572254930 0.000000e+00 1223.0
27 TraesCS1B01G009600 chr2D 83.383 999 143 17 3024 4008 4662824 4663813 0.000000e+00 904.0
28 TraesCS1B01G009600 chr2D 92.727 275 19 1 4606 4880 522609273 522609000 6.020000e-106 396.0
29 TraesCS1B01G009600 chr2B 84.972 1231 170 14 6073 7298 687206411 687205191 0.000000e+00 1234.0
30 TraesCS1B01G009600 chr2B 83.874 986 152 6 3056 4036 245300280 245301263 0.000000e+00 933.0
31 TraesCS1B01G009600 chr2B 82.498 1017 170 5 3138 4151 8084643 8083632 0.000000e+00 885.0
32 TraesCS1B01G009600 chr7B 86.089 1028 127 9 3024 4036 580662428 580663454 0.000000e+00 1092.0
33 TraesCS1B01G009600 chr7B 84.568 162 22 2 2863 3023 746617581 746617740 3.090000e-34 158.0
34 TraesCS1B01G009600 chr7B 86.525 141 16 2 2884 3023 506758049 506757911 1.440000e-32 152.0
35 TraesCS1B01G009600 chr5D 83.303 1108 171 10 3053 4151 112706533 112705431 0.000000e+00 1009.0
36 TraesCS1B01G009600 chr5D 84.079 961 141 7 3081 4036 90683524 90684477 0.000000e+00 917.0
37 TraesCS1B01G009600 chr5D 92.058 277 20 2 4605 4881 459115426 459115700 1.010000e-103 388.0
38 TraesCS1B01G009600 chr5D 76.609 466 91 14 1465 1921 442695261 442695717 2.990000e-59 241.0
39 TraesCS1B01G009600 chr5D 78.365 208 38 7 2816 3021 242011970 242011768 2.430000e-25 128.0
40 TraesCS1B01G009600 chr5D 92.500 80 6 0 2003 2082 525960716 525960637 1.890000e-21 115.0
41 TraesCS1B01G009600 chr7A 84.051 1022 151 9 3024 4036 733212717 733211699 0.000000e+00 974.0
42 TraesCS1B01G009600 chr7D 86.720 881 108 8 3049 3924 621300096 621300972 0.000000e+00 970.0
43 TraesCS1B01G009600 chr7D 82.840 169 25 4 2587 2755 470992618 470992454 1.860000e-31 148.0
44 TraesCS1B01G009600 chr3D 83.795 975 143 9 3052 4015 523399473 523398503 0.000000e+00 911.0
45 TraesCS1B01G009600 chr3D 85.475 179 25 1 4196 4374 433537998 433538175 1.420000e-42 185.0
46 TraesCS1B01G009600 chr3D 81.333 225 33 5 5546 5770 61069923 61069708 3.070000e-39 174.0
47 TraesCS1B01G009600 chr3D 75.916 382 64 16 2641 3012 299746956 299746593 3.970000e-38 171.0
48 TraesCS1B01G009600 chr3D 80.357 224 30 9 5540 5760 520704555 520704767 3.090000e-34 158.0
49 TraesCS1B01G009600 chr3D 88.800 125 14 0 4027 4151 433537998 433538122 4.000000e-33 154.0
50 TraesCS1B01G009600 chr3D 89.535 86 7 2 7696 7780 26655412 26655328 3.160000e-19 108.0
51 TraesCS1B01G009600 chr1D 91.971 274 20 2 4605 4878 139115897 139116168 4.690000e-102 383.0
52 TraesCS1B01G009600 chr1D 82.834 367 59 4 962 1326 496188 496552 8.020000e-85 326.0
53 TraesCS1B01G009600 chr1D 77.419 310 49 15 2661 2954 389488640 389488944 1.850000e-36 165.0
54 TraesCS1B01G009600 chr1D 84.177 158 24 1 1932 2089 19263737 19263581 1.440000e-32 152.0
55 TraesCS1B01G009600 chr1D 80.240 167 23 8 1921 2079 435755117 435755281 5.250000e-22 117.0
56 TraesCS1B01G009600 chr4A 91.135 282 21 4 4604 4884 606666082 606665804 6.070000e-101 379.0
57 TraesCS1B01G009600 chr4A 91.398 279 21 3 4602 4880 738091747 738092022 6.070000e-101 379.0
58 TraesCS1B01G009600 chr4A 89.761 293 24 6 4603 4892 694897729 694897440 3.650000e-98 370.0
59 TraesCS1B01G009600 chr4A 83.708 178 23 5 2848 3023 674594697 674594870 6.650000e-36 163.0
60 TraesCS1B01G009600 chr4A 85.714 147 15 5 2880 3023 674726867 674727010 5.180000e-32 150.0
61 TraesCS1B01G009600 chr4A 100.000 42 0 0 7695 7736 720287945 720287904 2.480000e-10 78.7
62 TraesCS1B01G009600 chr6A 90.845 284 23 3 4598 4881 9487314 9487034 2.180000e-100 377.0
63 TraesCS1B01G009600 chr6A 74.253 435 86 23 2586 3013 176575433 176575018 8.600000e-35 159.0
64 TraesCS1B01G009600 chr6A 100.000 33 0 0 7695 7727 368607629 368607661 2.500000e-05 62.1
65 TraesCS1B01G009600 chr6D 78.360 439 66 21 2592 3015 413351824 413352248 2.970000e-64 257.0
66 TraesCS1B01G009600 chr6D 75.146 342 61 17 2673 2996 457750187 457750522 1.120000e-28 139.0
67 TraesCS1B01G009600 chr3B 82.773 238 37 4 4196 4431 566604379 566604614 8.420000e-50 209.0
68 TraesCS1B01G009600 chr3B 81.991 211 26 8 2816 3023 63115073 63115274 1.430000e-37 169.0
69 TraesCS1B01G009600 chr3B 87.200 125 16 0 4027 4151 566604379 566604503 8.670000e-30 143.0
70 TraesCS1B01G009600 chr3B 73.793 435 74 30 2619 3023 744312607 744313031 1.450000e-27 135.0
71 TraesCS1B01G009600 chr4B 82.819 227 36 1 5541 5767 141488296 141488073 5.070000e-47 200.0
72 TraesCS1B01G009600 chr4B 76.119 402 61 20 2654 3023 671695329 671694931 2.380000e-40 178.0
73 TraesCS1B01G009600 chr4B 82.192 73 11 2 7814 7885 484081552 484081481 2.500000e-05 62.1
74 TraesCS1B01G009600 chr3A 83.256 215 26 7 2816 3023 51283508 51283297 1.100000e-43 189.0
75 TraesCS1B01G009600 chr3A 73.958 384 68 21 2661 3021 696282566 696282940 8.730000e-25 126.0
76 TraesCS1B01G009600 chr3A 90.476 84 6 2 7698 7780 36807804 36807722 8.790000e-20 110.0
77 TraesCS1B01G009600 chr3A 89.535 86 7 2 7696 7780 36876321 36876237 3.160000e-19 108.0
78 TraesCS1B01G009600 chr4D 86.111 72 8 2 7814 7884 394363708 394363638 8.910000e-10 76.8
79 TraesCS1B01G009600 chr6B 90.000 50 3 2 5776 5825 21875625 21875578 6.940000e-06 63.9
80 TraesCS1B01G009600 chr6B 100.000 31 0 0 7688 7718 35638436 35638406 3.230000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G009600 chr1B 4784129 4792410 8281 True 7444.500000 9782 100.000000 1 8282 2 chr1B.!!$R1 8281
1 TraesCS1B01G009600 chr1B 4083578 4091956 8378 False 3232.250000 7629 94.568000 8 8280 4 chr1B.!!$F1 8272
2 TraesCS1B01G009600 chr1B 4788091 4794000 5909 True 531.833333 1328 93.004833 270 6143 6 chr1B.!!$R2 5873
3 TraesCS1B01G009600 chrUn 279469263 279473315 4052 False 1191.000000 1430 84.762000 941 7448 2 chrUn.!!$F2 6507
4 TraesCS1B01G009600 chrUn 279433599 279437653 4054 False 1186.500000 1421 84.702000 941 7448 2 chrUn.!!$F1 6507
5 TraesCS1B01G009600 chr1A 2934616 2938670 4054 False 1186.500000 1421 84.702000 941 7448 2 chr1A.!!$F2 6507
6 TraesCS1B01G009600 chr1A 5612521 5613152 631 True 397.500000 449 84.507500 3723 4526 2 chr1A.!!$R3 803
7 TraesCS1B01G009600 chr2A 624965376 624966644 1268 True 1273.000000 1273 84.832000 6032 7305 1 chr2A.!!$R1 1273
8 TraesCS1B01G009600 chr2A 711465589 711466811 1222 True 1197.000000 1197 84.441000 6073 7298 1 chr2A.!!$R2 1225
9 TraesCS1B01G009600 chr2D 626592708 626593931 1223 True 1242.000000 1242 85.004000 6043 7267 1 chr2D.!!$R3 1224
10 TraesCS1B01G009600 chr2D 572254930 572256150 1220 True 1223.000000 1223 84.809000 6073 7298 1 chr2D.!!$R2 1225
11 TraesCS1B01G009600 chr2D 4662824 4663813 989 False 904.000000 904 83.383000 3024 4008 1 chr2D.!!$F1 984
12 TraesCS1B01G009600 chr2B 687205191 687206411 1220 True 1234.000000 1234 84.972000 6073 7298 1 chr2B.!!$R2 1225
13 TraesCS1B01G009600 chr2B 245300280 245301263 983 False 933.000000 933 83.874000 3056 4036 1 chr2B.!!$F1 980
14 TraesCS1B01G009600 chr2B 8083632 8084643 1011 True 885.000000 885 82.498000 3138 4151 1 chr2B.!!$R1 1013
15 TraesCS1B01G009600 chr7B 580662428 580663454 1026 False 1092.000000 1092 86.089000 3024 4036 1 chr7B.!!$F1 1012
16 TraesCS1B01G009600 chr5D 112705431 112706533 1102 True 1009.000000 1009 83.303000 3053 4151 1 chr5D.!!$R1 1098
17 TraesCS1B01G009600 chr5D 90683524 90684477 953 False 917.000000 917 84.079000 3081 4036 1 chr5D.!!$F1 955
18 TraesCS1B01G009600 chr7A 733211699 733212717 1018 True 974.000000 974 84.051000 3024 4036 1 chr7A.!!$R1 1012
19 TraesCS1B01G009600 chr7D 621300096 621300972 876 False 970.000000 970 86.720000 3049 3924 1 chr7D.!!$F1 875
20 TraesCS1B01G009600 chr3D 523398503 523399473 970 True 911.000000 911 83.795000 3052 4015 1 chr3D.!!$R4 963

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.100503 GTCACAACACACAACTGCCC 59.899 55.000 0.00 0.0 0.00 5.36 F
234 235 0.236711 CTTCAGAGCTTGTGTTGCGG 59.763 55.000 0.00 0.0 35.28 5.69 F
252 253 1.153901 GCCTGTGCGCGTAAGTAGA 60.154 57.895 8.43 0.0 41.68 2.59 F
4448 6471 1.073284 GGGGCTAGGTTTGTGTGAGAA 59.927 52.381 0.00 0.0 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
4347 6370 1.377463 CGACCACTCTCCTCTCCGT 60.377 63.158 0.00 0.0 0.00 4.69 R
4448 6471 0.041238 TCGTCCTTCCTCCATCACCT 59.959 55.000 0.00 0.0 0.00 4.00 R
4451 6474 0.976073 GGGTCGTCCTTCCTCCATCA 60.976 60.000 0.00 0.0 0.00 3.07 R
8132 10971 1.037030 ATAACTGTGGGGCCAATGCG 61.037 55.000 4.39 0.0 38.85 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.658475 CTCTCTTGTATGCGTATATAATCTAGC 57.342 37.037 3.36 0.00 0.00 3.42
29 30 7.982224 TCTTGTATGCGTATATAATCTAGCGT 58.018 34.615 3.36 0.00 0.00 5.07
30 31 7.908601 TCTTGTATGCGTATATAATCTAGCGTG 59.091 37.037 3.36 0.00 0.00 5.34
31 32 5.969435 TGTATGCGTATATAATCTAGCGTGC 59.031 40.000 0.00 0.00 0.00 5.34
33 34 5.806366 TGCGTATATAATCTAGCGTGCTA 57.194 39.130 1.07 1.07 0.00 3.49
34 35 5.566623 TGCGTATATAATCTAGCGTGCTAC 58.433 41.667 0.00 0.00 0.00 3.58
37 38 6.675002 GCGTATATAATCTAGCGTGCTACTGT 60.675 42.308 0.00 0.00 0.00 3.55
39 40 8.385858 CGTATATAATCTAGCGTGCTACTGTTA 58.614 37.037 0.00 0.00 0.00 2.41
40 41 9.705471 GTATATAATCTAGCGTGCTACTGTTAG 57.295 37.037 0.00 0.00 0.00 2.34
52 53 4.810790 GCTACTGTTAGCTCTTCTTCACA 58.189 43.478 0.00 0.00 46.47 3.58
53 54 5.230942 GCTACTGTTAGCTCTTCTTCACAA 58.769 41.667 0.00 0.00 46.47 3.33
54 55 5.119434 GCTACTGTTAGCTCTTCTTCACAAC 59.881 44.000 0.00 0.00 46.47 3.32
55 56 5.023533 ACTGTTAGCTCTTCTTCACAACA 57.976 39.130 0.00 0.00 0.00 3.33
58 59 2.890808 AGCTCTTCTTCACAACACGA 57.109 45.000 0.00 0.00 0.00 4.35
59 60 2.748605 AGCTCTTCTTCACAACACGAG 58.251 47.619 0.00 0.00 0.00 4.18
60 61 2.101582 AGCTCTTCTTCACAACACGAGT 59.898 45.455 0.00 0.00 0.00 4.18
61 62 3.318275 AGCTCTTCTTCACAACACGAGTA 59.682 43.478 0.00 0.00 0.00 2.59
63 64 4.607955 CTCTTCTTCACAACACGAGTACA 58.392 43.478 0.00 0.00 0.00 2.90
65 66 4.097437 TCTTCTTCACAACACGAGTACACT 59.903 41.667 0.00 0.00 0.00 3.55
66 67 3.961182 TCTTCACAACACGAGTACACTC 58.039 45.455 0.00 0.00 39.55 3.51
69 70 2.424246 TCACAACACGAGTACACTCACA 59.576 45.455 9.88 0.00 43.00 3.58
70 71 3.119424 TCACAACACGAGTACACTCACAA 60.119 43.478 9.88 0.00 43.00 3.33
71 72 3.242944 CACAACACGAGTACACTCACAAG 59.757 47.826 9.88 0.00 43.00 3.16
72 73 3.119245 ACAACACGAGTACACTCACAAGT 60.119 43.478 9.88 0.00 43.00 3.16
74 75 2.686405 ACACGAGTACACTCACAAGTCA 59.314 45.455 9.88 0.00 43.00 3.41
75 76 3.043586 CACGAGTACACTCACAAGTCAC 58.956 50.000 9.88 0.00 43.00 3.67
76 77 2.686405 ACGAGTACACTCACAAGTCACA 59.314 45.455 9.88 0.00 43.00 3.58
77 78 3.129813 ACGAGTACACTCACAAGTCACAA 59.870 43.478 9.88 0.00 43.00 3.33
78 79 3.486108 CGAGTACACTCACAAGTCACAAC 59.514 47.826 9.88 0.00 43.00 3.32
79 80 4.430007 GAGTACACTCACAAGTCACAACA 58.570 43.478 4.48 0.00 42.42 3.33
81 82 3.052455 ACACTCACAAGTCACAACACA 57.948 42.857 0.00 0.00 31.71 3.72
82 83 2.742053 ACACTCACAAGTCACAACACAC 59.258 45.455 0.00 0.00 31.71 3.82
83 84 2.741517 CACTCACAAGTCACAACACACA 59.258 45.455 0.00 0.00 31.71 3.72
84 85 3.188254 CACTCACAAGTCACAACACACAA 59.812 43.478 0.00 0.00 31.71 3.33
85 86 3.188460 ACTCACAAGTCACAACACACAAC 59.812 43.478 0.00 0.00 0.00 3.32
86 87 3.407698 TCACAAGTCACAACACACAACT 58.592 40.909 0.00 0.00 0.00 3.16
87 88 3.188254 TCACAAGTCACAACACACAACTG 59.812 43.478 0.00 0.00 0.00 3.16
88 89 2.095263 ACAAGTCACAACACACAACTGC 60.095 45.455 0.00 0.00 0.00 4.40
89 90 1.094785 AGTCACAACACACAACTGCC 58.905 50.000 0.00 0.00 0.00 4.85
90 91 0.100503 GTCACAACACACAACTGCCC 59.899 55.000 0.00 0.00 0.00 5.36
91 92 0.322906 TCACAACACACAACTGCCCA 60.323 50.000 0.00 0.00 0.00 5.36
92 93 0.529833 CACAACACACAACTGCCCAA 59.470 50.000 0.00 0.00 0.00 4.12
93 94 0.817013 ACAACACACAACTGCCCAAG 59.183 50.000 0.00 0.00 0.00 3.61
95 96 0.684153 AACACACAACTGCCCAAGCT 60.684 50.000 0.00 0.00 40.80 3.74
96 97 1.103398 ACACACAACTGCCCAAGCTC 61.103 55.000 0.00 0.00 40.80 4.09
97 98 1.529244 ACACAACTGCCCAAGCTCC 60.529 57.895 0.00 0.00 40.80 4.70
98 99 2.281761 ACAACTGCCCAAGCTCCG 60.282 61.111 0.00 0.00 40.80 4.63
99 100 3.058160 CAACTGCCCAAGCTCCGG 61.058 66.667 0.00 0.00 40.80 5.14
100 101 3.570212 AACTGCCCAAGCTCCGGT 61.570 61.111 0.00 0.00 40.80 5.28
101 102 3.850098 AACTGCCCAAGCTCCGGTG 62.850 63.158 0.00 0.00 40.80 4.94
105 106 3.953775 CCCAAGCTCCGGTGGTGT 61.954 66.667 9.27 0.00 32.60 4.16
108 109 1.671742 CAAGCTCCGGTGGTGTAGT 59.328 57.895 9.27 0.00 0.00 2.73
109 110 0.389948 CAAGCTCCGGTGGTGTAGTC 60.390 60.000 9.27 0.00 0.00 2.59
110 111 0.542232 AAGCTCCGGTGGTGTAGTCT 60.542 55.000 9.27 0.00 0.00 3.24
112 113 1.180029 GCTCCGGTGGTGTAGTCTTA 58.820 55.000 0.00 0.00 0.00 2.10
113 114 1.134560 GCTCCGGTGGTGTAGTCTTAG 59.865 57.143 0.00 0.00 0.00 2.18
114 115 1.749634 CTCCGGTGGTGTAGTCTTAGG 59.250 57.143 0.00 0.00 0.00 2.69
115 116 1.355381 TCCGGTGGTGTAGTCTTAGGA 59.645 52.381 0.00 0.00 0.00 2.94
117 118 2.564062 CCGGTGGTGTAGTCTTAGGAAA 59.436 50.000 0.00 0.00 0.00 3.13
118 119 3.368116 CCGGTGGTGTAGTCTTAGGAAAG 60.368 52.174 0.00 0.00 0.00 2.62
119 120 3.597255 GGTGGTGTAGTCTTAGGAAAGC 58.403 50.000 0.00 0.00 32.36 3.51
120 121 3.261137 GGTGGTGTAGTCTTAGGAAAGCT 59.739 47.826 0.00 0.00 32.36 3.74
121 122 4.465305 GGTGGTGTAGTCTTAGGAAAGCTA 59.535 45.833 0.00 0.00 32.36 3.32
122 123 5.394333 GGTGGTGTAGTCTTAGGAAAGCTAG 60.394 48.000 0.00 0.00 32.36 3.42
123 124 4.710375 TGGTGTAGTCTTAGGAAAGCTAGG 59.290 45.833 0.00 0.00 32.36 3.02
124 125 4.441773 GGTGTAGTCTTAGGAAAGCTAGGC 60.442 50.000 0.00 0.00 32.36 3.93
125 126 4.159879 GTGTAGTCTTAGGAAAGCTAGGCA 59.840 45.833 0.00 0.00 32.36 4.75
127 128 2.166664 AGTCTTAGGAAAGCTAGGCACG 59.833 50.000 0.00 0.00 32.36 5.34
128 129 2.094130 GTCTTAGGAAAGCTAGGCACGT 60.094 50.000 0.00 0.00 32.36 4.49
129 130 2.165845 TCTTAGGAAAGCTAGGCACGTC 59.834 50.000 0.00 0.00 32.36 4.34
130 131 1.848652 TAGGAAAGCTAGGCACGTCT 58.151 50.000 0.00 0.00 0.00 4.18
131 132 0.533032 AGGAAAGCTAGGCACGTCTC 59.467 55.000 0.00 0.00 0.00 3.36
133 134 1.634702 GAAAGCTAGGCACGTCTCAG 58.365 55.000 0.00 0.00 0.00 3.35
137 138 0.670546 GCTAGGCACGTCTCAGCAAA 60.671 55.000 0.00 0.00 32.46 3.68
138 139 1.795768 CTAGGCACGTCTCAGCAAAA 58.204 50.000 0.00 0.00 0.00 2.44
139 140 2.350522 CTAGGCACGTCTCAGCAAAAT 58.649 47.619 0.00 0.00 0.00 1.82
140 141 2.472695 AGGCACGTCTCAGCAAAATA 57.527 45.000 0.00 0.00 0.00 1.40
141 142 2.778299 AGGCACGTCTCAGCAAAATAA 58.222 42.857 0.00 0.00 0.00 1.40
145 146 4.570772 GGCACGTCTCAGCAAAATAAGATA 59.429 41.667 0.00 0.00 0.00 1.98
147 148 5.292101 GCACGTCTCAGCAAAATAAGATACT 59.708 40.000 0.00 0.00 0.00 2.12
149 150 7.394872 CACGTCTCAGCAAAATAAGATACTTC 58.605 38.462 0.00 0.00 0.00 3.01
150 151 7.063426 CACGTCTCAGCAAAATAAGATACTTCA 59.937 37.037 0.00 0.00 0.00 3.02
151 152 7.766278 ACGTCTCAGCAAAATAAGATACTTCAT 59.234 33.333 0.00 0.00 0.00 2.57
152 153 8.272176 CGTCTCAGCAAAATAAGATACTTCATC 58.728 37.037 0.00 0.00 0.00 2.92
154 155 8.267183 TCTCAGCAAAATAAGATACTTCATCCA 58.733 33.333 0.00 0.00 33.75 3.41
155 156 8.213518 TCAGCAAAATAAGATACTTCATCCAC 57.786 34.615 0.00 0.00 33.75 4.02
157 158 8.341173 CAGCAAAATAAGATACTTCATCCACTC 58.659 37.037 0.00 0.00 33.75 3.51
158 159 7.225538 AGCAAAATAAGATACTTCATCCACTCG 59.774 37.037 0.00 0.00 33.75 4.18
159 160 7.224753 GCAAAATAAGATACTTCATCCACTCGA 59.775 37.037 0.00 0.00 33.75 4.04
160 161 9.265901 CAAAATAAGATACTTCATCCACTCGAT 57.734 33.333 0.00 0.00 33.75 3.59
161 162 9.482627 AAAATAAGATACTTCATCCACTCGATC 57.517 33.333 0.00 0.00 33.75 3.69
162 163 4.757799 AGATACTTCATCCACTCGATCG 57.242 45.455 9.36 9.36 33.75 3.69
164 165 4.454161 AGATACTTCATCCACTCGATCGAG 59.546 45.833 36.95 36.95 40.05 4.04
168 169 1.141053 TCATCCACTCGATCGAGGAGA 59.859 52.381 39.70 34.33 45.88 3.71
169 170 2.158559 CATCCACTCGATCGAGGAGAT 58.841 52.381 39.70 34.79 45.88 2.75
179 180 2.534042 TCGAGGAGATCTGAAACCCT 57.466 50.000 0.00 0.00 0.00 4.34
180 181 2.821437 TCGAGGAGATCTGAAACCCTT 58.179 47.619 0.00 0.00 0.00 3.95
181 182 2.761208 TCGAGGAGATCTGAAACCCTTC 59.239 50.000 0.00 0.00 0.00 3.46
182 183 2.497675 CGAGGAGATCTGAAACCCTTCA 59.502 50.000 0.00 0.00 39.30 3.02
183 184 3.133721 CGAGGAGATCTGAAACCCTTCAT 59.866 47.826 0.00 0.00 40.78 2.57
184 185 4.702831 GAGGAGATCTGAAACCCTTCATC 58.297 47.826 0.00 0.00 40.78 2.92
185 186 4.107072 AGGAGATCTGAAACCCTTCATCA 58.893 43.478 0.00 0.00 40.78 3.07
186 187 4.725810 AGGAGATCTGAAACCCTTCATCAT 59.274 41.667 0.00 0.00 40.78 2.45
187 188 5.193325 AGGAGATCTGAAACCCTTCATCATT 59.807 40.000 0.00 0.00 40.78 2.57
194 195 4.523943 TGAAACCCTTCATCATTTCAGGTG 59.476 41.667 0.00 0.00 36.62 4.00
195 196 4.387026 AACCCTTCATCATTTCAGGTGA 57.613 40.909 0.00 0.00 0.00 4.02
196 197 3.960571 ACCCTTCATCATTTCAGGTGAG 58.039 45.455 0.00 0.00 0.00 3.51
197 198 2.686915 CCCTTCATCATTTCAGGTGAGC 59.313 50.000 0.00 0.00 0.00 4.26
199 200 3.626670 CCTTCATCATTTCAGGTGAGCTC 59.373 47.826 6.82 6.82 0.00 4.09
200 201 4.515361 CTTCATCATTTCAGGTGAGCTCT 58.485 43.478 16.19 0.00 0.00 4.09
201 202 5.396101 CCTTCATCATTTCAGGTGAGCTCTA 60.396 44.000 16.19 0.00 0.00 2.43
203 204 6.053632 TCATCATTTCAGGTGAGCTCTAAA 57.946 37.500 16.19 8.03 0.00 1.85
206 207 5.482908 TCATTTCAGGTGAGCTCTAAAGAC 58.517 41.667 16.19 3.78 0.00 3.01
207 208 3.577649 TTCAGGTGAGCTCTAAAGACG 57.422 47.619 16.19 0.00 0.00 4.18
208 209 1.202582 TCAGGTGAGCTCTAAAGACGC 59.797 52.381 16.19 0.00 0.00 5.19
209 210 0.533032 AGGTGAGCTCTAAAGACGCC 59.467 55.000 16.19 2.83 33.87 5.68
211 212 0.533032 GTGAGCTCTAAAGACGCCCT 59.467 55.000 16.19 0.00 0.00 5.19
212 213 1.066787 GTGAGCTCTAAAGACGCCCTT 60.067 52.381 16.19 0.00 36.47 3.95
213 214 1.623811 TGAGCTCTAAAGACGCCCTTT 59.376 47.619 16.19 8.22 46.21 3.11
214 215 2.038557 TGAGCTCTAAAGACGCCCTTTT 59.961 45.455 16.19 0.00 42.13 2.27
215 216 2.673862 GAGCTCTAAAGACGCCCTTTTC 59.326 50.000 6.43 0.00 42.13 2.29
216 217 2.303311 AGCTCTAAAGACGCCCTTTTCT 59.697 45.455 8.41 0.94 42.13 2.52
217 218 3.075148 GCTCTAAAGACGCCCTTTTCTT 58.925 45.455 8.41 0.00 42.13 2.52
218 219 3.125487 GCTCTAAAGACGCCCTTTTCTTC 59.875 47.826 8.41 0.00 42.13 2.87
219 220 4.315803 CTCTAAAGACGCCCTTTTCTTCA 58.684 43.478 8.41 0.00 42.13 3.02
220 221 4.315803 TCTAAAGACGCCCTTTTCTTCAG 58.684 43.478 8.41 1.46 42.13 3.02
221 222 2.930826 AAGACGCCCTTTTCTTCAGA 57.069 45.000 0.00 0.00 0.00 3.27
222 223 2.464157 AGACGCCCTTTTCTTCAGAG 57.536 50.000 0.00 0.00 0.00 3.35
224 225 0.398318 ACGCCCTTTTCTTCAGAGCT 59.602 50.000 0.00 0.00 0.00 4.09
227 228 2.234143 GCCCTTTTCTTCAGAGCTTGT 58.766 47.619 0.00 0.00 0.00 3.16
230 231 3.633986 CCCTTTTCTTCAGAGCTTGTGTT 59.366 43.478 0.00 0.00 0.00 3.32
232 233 3.698029 TTTCTTCAGAGCTTGTGTTGC 57.302 42.857 0.00 0.00 0.00 4.17
233 234 1.220529 TCTTCAGAGCTTGTGTTGCG 58.779 50.000 0.00 0.00 35.28 4.85
234 235 0.236711 CTTCAGAGCTTGTGTTGCGG 59.763 55.000 0.00 0.00 35.28 5.69
236 237 2.980233 AGAGCTTGTGTTGCGGCC 60.980 61.111 0.00 0.00 35.28 6.13
237 238 2.980233 GAGCTTGTGTTGCGGCCT 60.980 61.111 0.00 0.00 35.28 5.19
238 239 3.259425 GAGCTTGTGTTGCGGCCTG 62.259 63.158 0.00 0.00 35.28 4.85
239 240 3.595758 GCTTGTGTTGCGGCCTGT 61.596 61.111 0.00 0.00 0.00 4.00
240 241 2.332514 CTTGTGTTGCGGCCTGTG 59.667 61.111 0.00 0.00 0.00 3.66
241 242 3.829272 CTTGTGTTGCGGCCTGTGC 62.829 63.158 0.00 0.00 0.00 4.57
250 251 2.125832 GGCCTGTGCGCGTAAGTA 60.126 61.111 8.43 0.00 38.85 2.24
251 252 2.165301 GGCCTGTGCGCGTAAGTAG 61.165 63.158 8.43 2.54 38.85 2.57
252 253 1.153901 GCCTGTGCGCGTAAGTAGA 60.154 57.895 8.43 0.00 41.68 2.59
255 256 1.588404 CCTGTGCGCGTAAGTAGAATG 59.412 52.381 8.43 0.00 41.68 2.67
256 257 2.526077 CTGTGCGCGTAAGTAGAATGA 58.474 47.619 8.43 0.00 41.68 2.57
258 259 3.517602 TGTGCGCGTAAGTAGAATGATT 58.482 40.909 8.43 0.00 41.68 2.57
259 260 3.930229 TGTGCGCGTAAGTAGAATGATTT 59.070 39.130 8.43 0.00 41.68 2.17
260 261 4.390603 TGTGCGCGTAAGTAGAATGATTTT 59.609 37.500 8.43 0.00 41.68 1.82
261 262 4.723862 GTGCGCGTAAGTAGAATGATTTTG 59.276 41.667 8.43 0.00 41.68 2.44
262 263 4.390603 TGCGCGTAAGTAGAATGATTTTGT 59.609 37.500 8.43 0.00 41.68 2.83
263 264 5.106869 TGCGCGTAAGTAGAATGATTTTGTT 60.107 36.000 8.43 0.00 41.68 2.83
264 265 5.448162 GCGCGTAAGTAGAATGATTTTGTTC 59.552 40.000 8.43 0.00 41.68 3.18
265 266 6.530567 CGCGTAAGTAGAATGATTTTGTTCA 58.469 36.000 0.00 0.00 41.68 3.18
266 267 7.180079 CGCGTAAGTAGAATGATTTTGTTCAT 58.820 34.615 0.00 0.00 37.57 2.57
267 268 8.325282 CGCGTAAGTAGAATGATTTTGTTCATA 58.675 33.333 0.00 0.00 35.86 2.15
268 269 9.422196 GCGTAAGTAGAATGATTTTGTTCATAC 57.578 33.333 0.00 0.00 35.86 2.39
4364 6387 1.370587 CGACGGAGAGGAGAGTGGTC 61.371 65.000 0.00 0.00 0.00 4.02
4369 6392 3.063084 GAGGAGAGTGGTCGCGGT 61.063 66.667 6.13 0.00 0.00 5.68
4448 6471 1.073284 GGGGCTAGGTTTGTGTGAGAA 59.927 52.381 0.00 0.00 0.00 2.87
4451 6474 2.224548 GGCTAGGTTTGTGTGAGAAGGT 60.225 50.000 0.00 0.00 0.00 3.50
4549 6572 3.009695 CCCTGGTGTAGAATTGGTGGTTA 59.990 47.826 0.00 0.00 0.00 2.85
4633 6656 3.397618 TGGGAGAGATTTTCACTTCCCAA 59.602 43.478 7.56 0.00 42.51 4.12
4663 6686 2.548067 CCAACTAGGGATGCATACGACC 60.548 54.545 1.96 1.98 0.00 4.79
4670 6693 4.389374 AGGGATGCATACGACCATTTTAG 58.611 43.478 1.96 0.00 0.00 1.85
4700 6723 4.848357 ACCAAGATAAACATGGTCCTCAG 58.152 43.478 0.00 0.00 45.86 3.35
4742 6765 4.523173 TCAAGATACTTCTTCGTGAGTGGT 59.477 41.667 0.00 0.00 40.28 4.16
4777 6800 5.361857 ACCAAGCTTGATCCTCAATAAATGG 59.638 40.000 28.05 8.20 35.59 3.16
4789 6812 8.899887 TCCTCAATAAATGGAAGAAAATTCCT 57.100 30.769 8.05 0.00 39.31 3.36
4791 6814 9.374838 CCTCAATAAATGGAAGAAAATTCCTTG 57.625 33.333 8.05 4.28 39.31 3.61
4793 6816 9.709495 TCAATAAATGGAAGAAAATTCCTTGTG 57.291 29.630 8.05 0.23 39.31 3.33
4800 6823 5.279156 GGAAGAAAATTCCTTGTGCATCACT 60.279 40.000 0.00 0.00 34.16 3.41
4836 6859 7.631717 AGAAATTAAACTCAGGTCATTAGGC 57.368 36.000 0.00 0.00 0.00 3.93
4888 6911 1.470979 GGCTCTCTTTGCAATGCATGG 60.471 52.381 9.39 5.15 38.76 3.66
4978 7001 7.230510 ACATGTCTAAACATTTGGCAGACTTAA 59.769 33.333 0.00 0.00 43.74 1.85
4983 7006 9.290988 TCTAAACATTTGGCAGACTTAATTACA 57.709 29.630 0.00 0.00 0.00 2.41
4986 7009 7.701539 ACATTTGGCAGACTTAATTACATGA 57.298 32.000 0.00 0.00 0.00 3.07
5147 7170 3.758023 TGTCACCATGAACATTGTCATCC 59.242 43.478 0.00 0.00 36.04 3.51
5216 7239 1.753073 GGCATATTCAGCAAAGCCACT 59.247 47.619 0.00 0.00 41.63 4.00
5269 7292 2.668625 GGTAACAACCCACTTCCCAAA 58.331 47.619 0.00 0.00 0.00 3.28
5572 7595 9.722056 GTCATCTTATTCATGTGGTATGAAAAC 57.278 33.333 6.44 0.00 40.84 2.43
5577 7600 9.778993 CTTATTCATGTGGTATGAAAACTTGAG 57.221 33.333 6.44 0.00 40.84 3.02
5692 8514 7.778083 TGGTGTGTCATCTATTCGTAAATAGT 58.222 34.615 5.38 0.00 43.28 2.12
5909 8735 6.743575 AAATTCCTCGAACCATTGAGTTAG 57.256 37.500 0.00 0.00 35.57 2.34
5944 8770 8.588290 AAATAAATGTTAGGGTGCAGTAATGA 57.412 30.769 0.00 0.00 0.00 2.57
6386 9221 5.953183 TGCAATTAAAAGATGTGCACTAGG 58.047 37.500 19.41 0.00 40.14 3.02
6728 9563 1.341531 AGTGTCAGACTTCGGAACCTG 59.658 52.381 1.31 8.36 0.00 4.00
7123 9960 6.336842 ACAGATTGAGGAAACTTTCATTGG 57.663 37.500 3.93 0.00 44.43 3.16
7309 10147 6.553953 TGTATTGTACTCCATTGAAGGCTA 57.446 37.500 0.00 0.00 0.00 3.93
7327 10165 3.004106 GGCTATACCTTGCATGCTTGAAG 59.996 47.826 20.33 13.85 34.51 3.02
7439 10277 2.850321 CATTGTTGCATCCACGTGTAC 58.150 47.619 15.65 1.05 0.00 2.90
7468 10306 2.415168 CGCTTGTGTGTACCCATTGTAG 59.585 50.000 0.00 0.00 0.00 2.74
7679 10517 2.912956 TGATAGCACACTCCCCTTTTCT 59.087 45.455 0.00 0.00 0.00 2.52
7732 10570 6.757947 CCCACAATATAGGATGTTTTTGCAAG 59.242 38.462 0.00 0.00 0.00 4.01
7755 10593 5.179929 AGCTAAAACATCTTGCCAAAAATGC 59.820 36.000 0.00 0.00 0.00 3.56
7771 10609 7.471721 CCAAAAATGCTTACATTATGAGACGA 58.528 34.615 0.00 0.00 45.90 4.20
7773 10611 8.788813 CAAAAATGCTTACATTATGAGACGAAC 58.211 33.333 0.00 0.00 45.90 3.95
7783 10621 5.571784 TTATGAGACGAACGGAGTACATT 57.428 39.130 0.00 0.00 45.00 2.71
7784 10622 3.928727 TGAGACGAACGGAGTACATTT 57.071 42.857 0.00 0.00 45.00 2.32
7787 10625 3.834610 AGACGAACGGAGTACATTTGAG 58.165 45.455 0.00 0.00 45.00 3.02
7800 10638 2.687935 ACATTTGAGAAAAGCACCACGT 59.312 40.909 0.00 0.00 0.00 4.49
7902 10740 0.611618 AGCGGAAATGCCACATGGAA 60.612 50.000 0.87 0.00 37.39 3.53
7914 10752 0.251341 ACATGGAAGCCAACCTCCAC 60.251 55.000 0.00 0.00 36.95 4.02
8017 10856 7.919151 AAATTAATATTTCCGGGGACCAAAAA 58.081 30.769 0.00 0.00 37.70 1.94
8166 11005 2.609459 CAGTTATCGCCTCCATTGTGTC 59.391 50.000 0.00 0.00 0.00 3.67
8167 11006 1.940613 GTTATCGCCTCCATTGTGTCC 59.059 52.381 0.00 0.00 0.00 4.02
8169 11008 2.593468 ATCGCCTCCATTGTGTCCCG 62.593 60.000 0.00 0.00 0.00 5.14
8177 11016 2.093181 TCCATTGTGTCCCGGTATCAAG 60.093 50.000 0.00 0.00 0.00 3.02
8181 11020 3.328382 TGTGTCCCGGTATCAAGAAAG 57.672 47.619 0.00 0.00 0.00 2.62
8194 11033 7.260603 GGTATCAAGAAAGTTAAAGCATGCAT 58.739 34.615 21.98 4.57 0.00 3.96
8247 11087 6.655062 TGTTCAACGTGTATCAGAACAAATC 58.345 36.000 0.00 0.00 43.71 2.17
8250 11090 5.118050 TCAACGTGTATCAGAACAAATCGAC 59.882 40.000 0.00 0.00 0.00 4.20
8253 11093 4.089493 CGTGTATCAGAACAAATCGACGTT 59.911 41.667 0.00 0.00 0.00 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.658475 GCTAGATTATATACGCATACAAGAGAG 57.342 37.037 0.00 0.00 0.00 3.20
3 4 8.123575 ACGCTAGATTATATACGCATACAAGAG 58.876 37.037 0.00 0.00 0.00 2.85
5 6 7.305475 GCACGCTAGATTATATACGCATACAAG 60.305 40.741 0.00 0.00 0.00 3.16
6 7 6.471198 GCACGCTAGATTATATACGCATACAA 59.529 38.462 0.00 0.00 0.00 2.41
7 8 5.969435 GCACGCTAGATTATATACGCATACA 59.031 40.000 0.00 0.00 0.00 2.29
9 10 6.373186 AGCACGCTAGATTATATACGCATA 57.627 37.500 0.00 0.00 0.00 3.14
10 11 5.250235 AGCACGCTAGATTATATACGCAT 57.750 39.130 0.00 0.00 0.00 4.73
11 12 4.696899 AGCACGCTAGATTATATACGCA 57.303 40.909 0.00 0.00 0.00 5.24
13 14 6.773080 ACAGTAGCACGCTAGATTATATACG 58.227 40.000 0.00 0.00 0.00 3.06
14 15 9.705471 CTAACAGTAGCACGCTAGATTATATAC 57.295 37.037 0.00 0.00 0.00 1.47
31 32 6.144724 GTGTTGTGAAGAAGAGCTAACAGTAG 59.855 42.308 0.00 0.00 0.00 2.57
33 34 4.811557 GTGTTGTGAAGAAGAGCTAACAGT 59.188 41.667 0.00 0.00 0.00 3.55
34 35 4.084849 CGTGTTGTGAAGAAGAGCTAACAG 60.085 45.833 0.00 0.00 0.00 3.16
37 38 4.202121 ACTCGTGTTGTGAAGAAGAGCTAA 60.202 41.667 0.00 0.00 34.46 3.09
39 40 2.101582 ACTCGTGTTGTGAAGAAGAGCT 59.898 45.455 0.00 0.00 34.46 4.09
40 41 2.474816 ACTCGTGTTGTGAAGAAGAGC 58.525 47.619 0.00 0.00 34.46 4.09
41 42 4.441415 GTGTACTCGTGTTGTGAAGAAGAG 59.559 45.833 0.00 0.00 36.58 2.85
44 45 4.142337 TGAGTGTACTCGTGTTGTGAAGAA 60.142 41.667 7.46 0.00 45.72 2.52
45 46 3.379057 TGAGTGTACTCGTGTTGTGAAGA 59.621 43.478 7.46 0.00 45.72 2.87
47 48 3.119424 TGTGAGTGTACTCGTGTTGTGAA 60.119 43.478 7.46 0.00 45.72 3.18
49 50 2.804647 TGTGAGTGTACTCGTGTTGTG 58.195 47.619 7.46 0.00 45.72 3.33
50 51 3.119245 ACTTGTGAGTGTACTCGTGTTGT 60.119 43.478 7.46 0.99 45.72 3.32
51 52 3.444916 ACTTGTGAGTGTACTCGTGTTG 58.555 45.455 7.46 0.46 45.72 3.33
52 53 3.129813 TGACTTGTGAGTGTACTCGTGTT 59.870 43.478 7.46 0.00 45.72 3.32
53 54 2.686405 TGACTTGTGAGTGTACTCGTGT 59.314 45.455 7.46 0.00 45.72 4.49
54 55 3.043586 GTGACTTGTGAGTGTACTCGTG 58.956 50.000 7.46 1.06 45.72 4.35
55 56 2.686405 TGTGACTTGTGAGTGTACTCGT 59.314 45.455 7.46 0.00 45.72 4.18
58 59 4.181578 GTGTTGTGACTTGTGAGTGTACT 58.818 43.478 0.00 0.00 35.88 2.73
59 60 3.930229 TGTGTTGTGACTTGTGAGTGTAC 59.070 43.478 0.00 0.00 35.88 2.90
60 61 3.930229 GTGTGTTGTGACTTGTGAGTGTA 59.070 43.478 0.00 0.00 35.88 2.90
61 62 2.742053 GTGTGTTGTGACTTGTGAGTGT 59.258 45.455 0.00 0.00 35.88 3.55
63 64 3.052455 TGTGTGTTGTGACTTGTGAGT 57.948 42.857 0.00 0.00 39.32 3.41
65 66 3.188254 CAGTTGTGTGTTGTGACTTGTGA 59.812 43.478 0.00 0.00 0.00 3.58
66 67 3.491356 CAGTTGTGTGTTGTGACTTGTG 58.509 45.455 0.00 0.00 0.00 3.33
69 70 1.472480 GGCAGTTGTGTGTTGTGACTT 59.528 47.619 0.00 0.00 0.00 3.01
70 71 1.094785 GGCAGTTGTGTGTTGTGACT 58.905 50.000 0.00 0.00 0.00 3.41
71 72 0.100503 GGGCAGTTGTGTGTTGTGAC 59.899 55.000 0.00 0.00 0.00 3.67
72 73 0.322906 TGGGCAGTTGTGTGTTGTGA 60.323 50.000 0.00 0.00 0.00 3.58
74 75 0.817013 CTTGGGCAGTTGTGTGTTGT 59.183 50.000 0.00 0.00 0.00 3.32
75 76 0.528249 GCTTGGGCAGTTGTGTGTTG 60.528 55.000 0.00 0.00 38.54 3.33
76 77 0.684153 AGCTTGGGCAGTTGTGTGTT 60.684 50.000 0.00 0.00 41.70 3.32
77 78 1.076777 AGCTTGGGCAGTTGTGTGT 60.077 52.632 0.00 0.00 41.70 3.72
78 79 1.656441 GAGCTTGGGCAGTTGTGTG 59.344 57.895 0.00 0.00 41.70 3.82
79 80 1.529244 GGAGCTTGGGCAGTTGTGT 60.529 57.895 0.00 0.00 41.70 3.72
81 82 2.281761 CGGAGCTTGGGCAGTTGT 60.282 61.111 0.00 0.00 41.70 3.32
82 83 3.058160 CCGGAGCTTGGGCAGTTG 61.058 66.667 0.00 0.00 41.70 3.16
83 84 3.570212 ACCGGAGCTTGGGCAGTT 61.570 61.111 9.46 0.00 41.70 3.16
84 85 4.335647 CACCGGAGCTTGGGCAGT 62.336 66.667 9.46 0.00 41.70 4.40
88 89 2.521958 CTACACCACCGGAGCTTGGG 62.522 65.000 9.46 4.88 37.18 4.12
89 90 1.079127 CTACACCACCGGAGCTTGG 60.079 63.158 9.46 8.12 39.00 3.61
90 91 0.389948 GACTACACCACCGGAGCTTG 60.390 60.000 9.46 2.37 0.00 4.01
91 92 0.542232 AGACTACACCACCGGAGCTT 60.542 55.000 9.46 0.00 0.00 3.74
92 93 0.542232 AAGACTACACCACCGGAGCT 60.542 55.000 9.46 0.00 0.00 4.09
93 94 1.134560 CTAAGACTACACCACCGGAGC 59.865 57.143 9.46 0.00 0.00 4.70
95 96 1.355381 TCCTAAGACTACACCACCGGA 59.645 52.381 9.46 0.00 0.00 5.14
96 97 1.843368 TCCTAAGACTACACCACCGG 58.157 55.000 0.00 0.00 0.00 5.28
97 98 3.846360 CTTTCCTAAGACTACACCACCG 58.154 50.000 0.00 0.00 32.92 4.94
98 99 3.261137 AGCTTTCCTAAGACTACACCACC 59.739 47.826 0.00 0.00 32.92 4.61
99 100 4.538746 AGCTTTCCTAAGACTACACCAC 57.461 45.455 0.00 0.00 32.92 4.16
100 101 4.710375 CCTAGCTTTCCTAAGACTACACCA 59.290 45.833 0.00 0.00 32.92 4.17
101 102 4.441773 GCCTAGCTTTCCTAAGACTACACC 60.442 50.000 0.00 0.00 32.92 4.16
102 103 4.159879 TGCCTAGCTTTCCTAAGACTACAC 59.840 45.833 0.00 0.00 32.92 2.90
103 104 4.159879 GTGCCTAGCTTTCCTAAGACTACA 59.840 45.833 0.00 0.00 32.92 2.74
105 106 3.380637 CGTGCCTAGCTTTCCTAAGACTA 59.619 47.826 0.00 0.00 32.92 2.59
108 109 2.165845 GACGTGCCTAGCTTTCCTAAGA 59.834 50.000 0.00 0.00 32.92 2.10
109 110 2.166664 AGACGTGCCTAGCTTTCCTAAG 59.833 50.000 0.00 0.00 34.36 2.18
110 111 2.165845 GAGACGTGCCTAGCTTTCCTAA 59.834 50.000 0.00 0.00 0.00 2.69
112 113 0.533032 GAGACGTGCCTAGCTTTCCT 59.467 55.000 0.00 0.00 0.00 3.36
113 114 0.246635 TGAGACGTGCCTAGCTTTCC 59.753 55.000 0.00 0.00 0.00 3.13
114 115 1.634702 CTGAGACGTGCCTAGCTTTC 58.365 55.000 0.00 0.00 0.00 2.62
115 116 0.390472 GCTGAGACGTGCCTAGCTTT 60.390 55.000 0.00 0.00 0.00 3.51
117 118 1.536073 TTGCTGAGACGTGCCTAGCT 61.536 55.000 0.00 0.00 35.50 3.32
118 119 0.670546 TTTGCTGAGACGTGCCTAGC 60.671 55.000 0.00 0.00 35.06 3.42
119 120 1.795768 TTTTGCTGAGACGTGCCTAG 58.204 50.000 0.00 0.00 0.00 3.02
120 121 2.472695 ATTTTGCTGAGACGTGCCTA 57.527 45.000 0.00 0.00 0.00 3.93
121 122 2.472695 TATTTTGCTGAGACGTGCCT 57.527 45.000 0.00 0.00 0.00 4.75
122 123 2.742053 TCTTATTTTGCTGAGACGTGCC 59.258 45.455 0.00 0.00 0.00 5.01
123 124 4.606457 ATCTTATTTTGCTGAGACGTGC 57.394 40.909 0.00 0.00 0.00 5.34
124 125 6.893958 AGTATCTTATTTTGCTGAGACGTG 57.106 37.500 0.00 0.00 0.00 4.49
125 126 7.097192 TGAAGTATCTTATTTTGCTGAGACGT 58.903 34.615 0.00 0.00 0.00 4.34
127 128 8.555361 GGATGAAGTATCTTATTTTGCTGAGAC 58.445 37.037 0.00 0.00 36.03 3.36
128 129 8.267183 TGGATGAAGTATCTTATTTTGCTGAGA 58.733 33.333 0.00 0.00 36.03 3.27
129 130 8.341173 GTGGATGAAGTATCTTATTTTGCTGAG 58.659 37.037 0.00 0.00 36.03 3.35
130 131 8.049117 AGTGGATGAAGTATCTTATTTTGCTGA 58.951 33.333 0.00 0.00 36.03 4.26
131 132 8.218338 AGTGGATGAAGTATCTTATTTTGCTG 57.782 34.615 0.00 0.00 36.03 4.41
133 134 7.224753 TCGAGTGGATGAAGTATCTTATTTTGC 59.775 37.037 0.00 0.00 36.03 3.68
137 138 7.175119 TCGATCGAGTGGATGAAGTATCTTATT 59.825 37.037 15.15 0.00 34.82 1.40
138 139 6.655425 TCGATCGAGTGGATGAAGTATCTTAT 59.345 38.462 15.15 0.00 34.82 1.73
139 140 5.995897 TCGATCGAGTGGATGAAGTATCTTA 59.004 40.000 15.15 0.00 34.82 2.10
140 141 4.822350 TCGATCGAGTGGATGAAGTATCTT 59.178 41.667 15.15 0.00 34.82 2.40
141 142 4.390264 TCGATCGAGTGGATGAAGTATCT 58.610 43.478 15.15 0.00 34.82 1.98
145 146 1.678627 CCTCGATCGAGTGGATGAAGT 59.321 52.381 35.85 0.00 40.44 3.01
147 148 1.950216 CTCCTCGATCGAGTGGATGAA 59.050 52.381 35.85 15.68 40.44 2.57
149 150 1.598882 TCTCCTCGATCGAGTGGATG 58.401 55.000 35.85 23.51 40.44 3.51
150 151 2.432444 GATCTCCTCGATCGAGTGGAT 58.568 52.381 35.85 33.40 39.22 3.41
151 152 1.885560 GATCTCCTCGATCGAGTGGA 58.114 55.000 35.85 31.11 39.22 4.02
158 159 8.142170 ATGAAGGGTTTCAGATCTCCTCGATC 62.142 46.154 0.00 0.00 45.89 3.69
159 160 3.039252 AGGGTTTCAGATCTCCTCGAT 57.961 47.619 0.00 0.00 34.25 3.59
160 161 2.534042 AGGGTTTCAGATCTCCTCGA 57.466 50.000 0.00 0.00 0.00 4.04
161 162 2.497675 TGAAGGGTTTCAGATCTCCTCG 59.502 50.000 0.00 0.00 38.37 4.63
162 163 4.163078 TGATGAAGGGTTTCAGATCTCCTC 59.837 45.833 0.00 0.00 45.89 3.71
164 165 4.494091 TGATGAAGGGTTTCAGATCTCC 57.506 45.455 0.00 0.00 45.89 3.71
171 172 4.523943 CACCTGAAATGATGAAGGGTTTCA 59.476 41.667 0.00 0.00 46.67 2.69
172 173 4.766891 TCACCTGAAATGATGAAGGGTTTC 59.233 41.667 0.00 0.00 33.87 2.78
174 175 4.338879 CTCACCTGAAATGATGAAGGGTT 58.661 43.478 0.00 0.00 33.87 4.11
176 177 2.686915 GCTCACCTGAAATGATGAAGGG 59.313 50.000 0.00 0.00 33.87 3.95
177 178 3.618351 AGCTCACCTGAAATGATGAAGG 58.382 45.455 0.00 0.00 35.82 3.46
178 179 4.515361 AGAGCTCACCTGAAATGATGAAG 58.485 43.478 17.77 0.00 0.00 3.02
179 180 4.564782 AGAGCTCACCTGAAATGATGAA 57.435 40.909 17.77 0.00 0.00 2.57
180 181 5.682234 TTAGAGCTCACCTGAAATGATGA 57.318 39.130 17.77 0.00 0.00 2.92
181 182 6.036953 GTCTTTAGAGCTCACCTGAAATGATG 59.963 42.308 17.77 0.00 0.00 3.07
182 183 6.112058 GTCTTTAGAGCTCACCTGAAATGAT 58.888 40.000 17.77 0.00 0.00 2.45
183 184 5.482908 GTCTTTAGAGCTCACCTGAAATGA 58.517 41.667 17.77 5.25 0.00 2.57
184 185 4.328440 CGTCTTTAGAGCTCACCTGAAATG 59.672 45.833 17.77 3.15 0.00 2.32
185 186 4.499183 CGTCTTTAGAGCTCACCTGAAAT 58.501 43.478 17.77 0.00 0.00 2.17
186 187 3.861131 GCGTCTTTAGAGCTCACCTGAAA 60.861 47.826 17.77 6.99 0.00 2.69
187 188 2.352814 GCGTCTTTAGAGCTCACCTGAA 60.353 50.000 17.77 0.00 0.00 3.02
192 193 0.533032 AGGGCGTCTTTAGAGCTCAC 59.467 55.000 17.77 3.60 32.95 3.51
194 195 2.388310 AAAGGGCGTCTTTAGAGCTC 57.612 50.000 5.27 5.27 43.35 4.09
195 196 2.303311 AGAAAAGGGCGTCTTTAGAGCT 59.697 45.455 6.38 0.00 44.30 4.09
196 197 2.701107 AGAAAAGGGCGTCTTTAGAGC 58.299 47.619 6.38 0.00 44.30 4.09
197 198 4.315803 TGAAGAAAAGGGCGTCTTTAGAG 58.684 43.478 6.38 0.00 44.30 2.43
199 200 4.315803 TCTGAAGAAAAGGGCGTCTTTAG 58.684 43.478 6.38 2.48 44.30 1.85
200 201 4.315803 CTCTGAAGAAAAGGGCGTCTTTA 58.684 43.478 6.38 0.00 44.30 1.85
201 202 3.142174 CTCTGAAGAAAAGGGCGTCTTT 58.858 45.455 0.00 0.00 46.82 2.52
203 204 1.609320 GCTCTGAAGAAAAGGGCGTCT 60.609 52.381 0.00 0.00 29.94 4.18
206 207 1.198637 CAAGCTCTGAAGAAAAGGGCG 59.801 52.381 0.00 0.00 46.25 6.13
207 208 2.030451 CACAAGCTCTGAAGAAAAGGGC 60.030 50.000 0.00 0.00 41.76 5.19
208 209 3.217626 ACACAAGCTCTGAAGAAAAGGG 58.782 45.455 0.00 0.00 0.00 3.95
209 210 4.604976 CAACACAAGCTCTGAAGAAAAGG 58.395 43.478 0.00 0.00 0.00 3.11
211 212 3.487376 CGCAACACAAGCTCTGAAGAAAA 60.487 43.478 0.00 0.00 0.00 2.29
212 213 2.032054 CGCAACACAAGCTCTGAAGAAA 59.968 45.455 0.00 0.00 0.00 2.52
213 214 1.599071 CGCAACACAAGCTCTGAAGAA 59.401 47.619 0.00 0.00 0.00 2.52
214 215 1.220529 CGCAACACAAGCTCTGAAGA 58.779 50.000 0.00 0.00 0.00 2.87
215 216 0.236711 CCGCAACACAAGCTCTGAAG 59.763 55.000 0.00 0.00 0.00 3.02
216 217 1.785041 GCCGCAACACAAGCTCTGAA 61.785 55.000 0.00 0.00 0.00 3.02
217 218 2.253758 GCCGCAACACAAGCTCTGA 61.254 57.895 0.00 0.00 0.00 3.27
218 219 2.253452 GCCGCAACACAAGCTCTG 59.747 61.111 0.00 0.00 0.00 3.35
219 220 2.980233 GGCCGCAACACAAGCTCT 60.980 61.111 0.00 0.00 0.00 4.09
220 221 2.980233 AGGCCGCAACACAAGCTC 60.980 61.111 0.00 0.00 0.00 4.09
221 222 3.289834 CAGGCCGCAACACAAGCT 61.290 61.111 0.00 0.00 0.00 3.74
222 223 3.595758 ACAGGCCGCAACACAAGC 61.596 61.111 0.00 0.00 0.00 4.01
224 225 3.898509 GCACAGGCCGCAACACAA 61.899 61.111 0.00 0.00 0.00 3.33
232 233 3.975083 TACTTACGCGCACAGGCCG 62.975 63.158 5.73 0.00 38.89 6.13
233 234 2.125832 TACTTACGCGCACAGGCC 60.126 61.111 5.73 0.00 36.38 5.19
234 235 0.734942 TTCTACTTACGCGCACAGGC 60.735 55.000 5.73 0.00 0.00 4.85
236 237 2.526077 TCATTCTACTTACGCGCACAG 58.474 47.619 5.73 1.36 0.00 3.66
237 238 2.640346 TCATTCTACTTACGCGCACA 57.360 45.000 5.73 0.00 0.00 4.57
238 239 4.516092 AAATCATTCTACTTACGCGCAC 57.484 40.909 5.73 0.00 0.00 5.34
239 240 4.390603 ACAAAATCATTCTACTTACGCGCA 59.609 37.500 5.73 0.00 0.00 6.09
240 241 4.893795 ACAAAATCATTCTACTTACGCGC 58.106 39.130 5.73 0.00 0.00 6.86
241 242 6.530567 TGAACAAAATCATTCTACTTACGCG 58.469 36.000 3.53 3.53 0.00 6.01
242 243 9.422196 GTATGAACAAAATCATTCTACTTACGC 57.578 33.333 0.00 0.00 40.44 4.42
249 250 9.906660 GGTTGTTGTATGAACAAAATCATTCTA 57.093 29.630 6.47 0.00 46.84 2.10
250 251 8.641541 AGGTTGTTGTATGAACAAAATCATTCT 58.358 29.630 6.47 0.00 46.84 2.40
251 252 8.816640 AGGTTGTTGTATGAACAAAATCATTC 57.183 30.769 6.47 0.00 46.84 2.67
252 253 9.612066 AAAGGTTGTTGTATGAACAAAATCATT 57.388 25.926 6.47 0.00 46.84 2.57
255 256 8.539674 GTGAAAGGTTGTTGTATGAACAAAATC 58.460 33.333 6.47 4.65 46.84 2.17
256 257 7.494298 GGTGAAAGGTTGTTGTATGAACAAAAT 59.506 33.333 6.47 0.00 46.84 1.82
258 259 6.071334 TGGTGAAAGGTTGTTGTATGAACAAA 60.071 34.615 6.47 0.00 46.84 2.83
259 260 5.419155 TGGTGAAAGGTTGTTGTATGAACAA 59.581 36.000 0.00 0.00 43.32 2.83
260 261 4.950475 TGGTGAAAGGTTGTTGTATGAACA 59.050 37.500 0.00 0.00 0.00 3.18
261 262 5.507315 CCTGGTGAAAGGTTGTTGTATGAAC 60.507 44.000 0.00 0.00 32.17 3.18
262 263 4.582656 CCTGGTGAAAGGTTGTTGTATGAA 59.417 41.667 0.00 0.00 32.17 2.57
263 264 4.141287 CCTGGTGAAAGGTTGTTGTATGA 58.859 43.478 0.00 0.00 32.17 2.15
264 265 4.141287 TCCTGGTGAAAGGTTGTTGTATG 58.859 43.478 0.00 0.00 38.58 2.39
265 266 4.447138 TCCTGGTGAAAGGTTGTTGTAT 57.553 40.909 0.00 0.00 38.58 2.29
266 267 3.935818 TCCTGGTGAAAGGTTGTTGTA 57.064 42.857 0.00 0.00 38.58 2.41
267 268 2.818751 TCCTGGTGAAAGGTTGTTGT 57.181 45.000 0.00 0.00 38.58 3.32
268 269 3.243839 CCATTCCTGGTGAAAGGTTGTTG 60.244 47.826 0.00 0.00 37.12 3.33
270 271 2.176798 TCCATTCCTGGTGAAAGGTTGT 59.823 45.455 0.00 0.00 41.57 3.32
271 272 2.875296 TCCATTCCTGGTGAAAGGTTG 58.125 47.619 0.00 0.00 41.57 3.77
4347 6370 1.377463 CGACCACTCTCCTCTCCGT 60.377 63.158 0.00 0.00 0.00 4.69
4369 6392 4.075793 CCTCCCTCCTCCGGTCCA 62.076 72.222 0.00 0.00 0.00 4.02
4448 6471 0.041238 TCGTCCTTCCTCCATCACCT 59.959 55.000 0.00 0.00 0.00 4.00
4451 6474 0.976073 GGGTCGTCCTTCCTCCATCA 60.976 60.000 0.00 0.00 0.00 3.07
4535 6558 4.081862 CAGGTCGACTAACCACCAATTCTA 60.082 45.833 16.46 0.00 42.12 2.10
4549 6572 1.745320 AACGGAGCAACAGGTCGACT 61.745 55.000 16.46 0.00 0.00 4.18
4592 6615 5.990668 TCCCATTTTTAGGAGCTCTAGAAC 58.009 41.667 14.64 0.00 0.00 3.01
4633 6656 2.254152 TCCCTAGTTGGTGCAGAGAT 57.746 50.000 0.00 0.00 0.00 2.75
4742 6765 0.033601 AAGCTTGGTGTGTGGTGGAA 60.034 50.000 0.00 0.00 0.00 3.53
4749 6772 1.421268 TGAGGATCAAGCTTGGTGTGT 59.579 47.619 25.73 5.69 45.97 3.72
4777 6800 5.776744 AGTGATGCACAAGGAATTTTCTTC 58.223 37.500 0.00 0.00 36.74 2.87
4789 6812 6.486320 TCTTAGAATTGACAAGTGATGCACAA 59.514 34.615 0.00 0.00 36.74 3.33
4791 6814 6.486253 TCTTAGAATTGACAAGTGATGCAC 57.514 37.500 0.00 0.00 34.10 4.57
4793 6816 8.976986 AATTTCTTAGAATTGACAAGTGATGC 57.023 30.769 0.00 0.00 0.00 3.91
4983 7006 8.672815 GCTAGTCTTAATTTTGCTCTTTCTCAT 58.327 33.333 0.00 0.00 0.00 2.90
4986 7009 8.628630 AAGCTAGTCTTAATTTTGCTCTTTCT 57.371 30.769 0.00 0.00 32.10 2.52
5147 7170 6.145696 CGCTTAGAATTAATTCCCTTCGGTAG 59.854 42.308 21.86 10.31 37.51 3.18
5185 7208 4.722700 ATATGCCATCCCCGCGCC 62.723 66.667 0.00 0.00 0.00 6.53
5187 7210 1.300971 CTGAATATGCCATCCCCGCG 61.301 60.000 0.00 0.00 0.00 6.46
5216 7239 7.338703 CCAATACACTACTTAGGTGTCTGACTA 59.661 40.741 9.51 0.00 45.23 2.59
5269 7292 1.656587 TGCCTCCCTAACACATGAGT 58.343 50.000 0.00 0.00 0.00 3.41
5572 7595 3.458189 CCTACCGCCAATTCTACTCAAG 58.542 50.000 0.00 0.00 0.00 3.02
5577 7600 2.256117 ATGCCTACCGCCAATTCTAC 57.744 50.000 0.00 0.00 36.24 2.59
5777 8602 8.778059 AGTGGGGATGAACTTTGTAAGAATATA 58.222 33.333 0.00 0.00 0.00 0.86
5928 8754 9.725019 CTATGAAATATCATTACTGCACCCTAA 57.275 33.333 0.00 0.00 43.89 2.69
6023 8849 7.921041 ATATTTGTTAGAGTGAGATGGAGGA 57.079 36.000 0.00 0.00 0.00 3.71
6386 9221 4.287238 TCTTTCTTTTGCCTTTCGTCAC 57.713 40.909 0.00 0.00 0.00 3.67
6728 9563 7.011295 GCTCTTTATCAGATGGAGCTAATATGC 59.989 40.741 19.16 0.00 43.92 3.14
7123 9960 6.547141 TCCATGTTGATTTGTATCCAAGGATC 59.453 38.462 4.57 0.00 36.17 3.36
7309 10147 3.424703 ACACTTCAAGCATGCAAGGTAT 58.575 40.909 21.98 0.00 0.00 2.73
7439 10277 4.214545 TGGGTACACACAAGCGAATTAAAG 59.785 41.667 0.00 0.00 0.00 1.85
7468 10306 7.176589 ACTGGATATACTATTAGCAAGCTCC 57.823 40.000 0.00 0.00 0.00 4.70
7542 10380 9.246670 TCGTATAGCTAGCCAACCTTATTATAA 57.753 33.333 12.13 0.00 0.00 0.98
7636 10474 3.090952 GCAACAACCTGCATTTACACA 57.909 42.857 0.00 0.00 42.17 3.72
7679 10517 3.137544 GGGAGTAGGAGAGAGAGACATGA 59.862 52.174 0.00 0.00 0.00 3.07
7732 10570 5.179929 AGCATTTTTGGCAAGATGTTTTAGC 59.820 36.000 19.94 9.76 29.00 3.09
7740 10578 8.259411 TCATAATGTAAGCATTTTTGGCAAGAT 58.741 29.630 0.00 0.00 42.19 2.40
7741 10579 7.609960 TCATAATGTAAGCATTTTTGGCAAGA 58.390 30.769 0.00 0.00 42.19 3.02
7746 10584 7.471721 TCGTCTCATAATGTAAGCATTTTTGG 58.528 34.615 0.00 0.00 42.19 3.28
7755 10593 5.579718 ACTCCGTTCGTCTCATAATGTAAG 58.420 41.667 0.00 0.00 0.00 2.34
7771 10609 4.819630 TGCTTTTCTCAAATGTACTCCGTT 59.180 37.500 0.00 0.00 0.00 4.44
7773 10611 4.378459 GGTGCTTTTCTCAAATGTACTCCG 60.378 45.833 0.00 0.00 33.65 4.63
7783 10621 2.289547 GCTTACGTGGTGCTTTTCTCAA 59.710 45.455 0.00 0.00 0.00 3.02
7784 10622 1.871039 GCTTACGTGGTGCTTTTCTCA 59.129 47.619 0.00 0.00 0.00 3.27
7787 10625 1.069227 CCAGCTTACGTGGTGCTTTTC 60.069 52.381 0.00 0.00 34.51 2.29
7862 10700 5.115480 GCTATTAGATTGGCTCTAGATGGC 58.885 45.833 0.00 0.77 37.75 4.40
7902 10740 2.750350 CCTTCGTGGAGGTTGGCT 59.250 61.111 0.00 0.00 38.35 4.75
7914 10752 6.212955 TCAAAGTTTTCAATTAAGGCCTTCG 58.787 36.000 24.49 9.55 0.00 3.79
7947 10786 2.290641 GCCGCCTCAGGTGTATTAAATG 59.709 50.000 2.86 0.00 0.00 2.32
8021 10860 9.781834 CATGAACTTTGCGGTCTATTTTTATTA 57.218 29.630 0.00 0.00 0.00 0.98
8022 10861 8.519526 TCATGAACTTTGCGGTCTATTTTTATT 58.480 29.630 0.00 0.00 0.00 1.40
8023 10862 8.050778 TCATGAACTTTGCGGTCTATTTTTAT 57.949 30.769 0.00 0.00 0.00 1.40
8024 10863 7.441890 TCATGAACTTTGCGGTCTATTTTTA 57.558 32.000 0.00 0.00 0.00 1.52
8029 10868 4.396166 CCTTTCATGAACTTTGCGGTCTAT 59.604 41.667 7.89 0.00 0.00 1.98
8034 10873 2.665519 CGTCCTTTCATGAACTTTGCGG 60.666 50.000 7.89 2.60 0.00 5.69
8044 10883 1.363744 GCTGACTCCGTCCTTTCATG 58.636 55.000 0.00 0.00 0.00 3.07
8093 10932 2.768344 CATACCGTCTGGGGCCCT 60.768 66.667 25.93 4.22 41.60 5.19
8102 10941 3.560278 CCGCGCCAACATACCGTC 61.560 66.667 0.00 0.00 0.00 4.79
8132 10971 1.037030 ATAACTGTGGGGCCAATGCG 61.037 55.000 4.39 0.00 38.85 4.73
8166 11005 4.698304 TGCTTTAACTTTCTTGATACCGGG 59.302 41.667 6.32 0.00 0.00 5.73
8167 11006 5.873179 TGCTTTAACTTTCTTGATACCGG 57.127 39.130 0.00 0.00 0.00 5.28
8169 11008 6.620678 TGCATGCTTTAACTTTCTTGATACC 58.379 36.000 20.33 0.00 0.00 2.73
8224 11064 5.783654 CGATTTGTTCTGATACACGTTGAAC 59.216 40.000 0.00 0.00 37.92 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.