AutoCloner

Multiple sequence alignment - TraesCS1B01G008700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1B01G008700	chr1B	100.000	3346	0	0	1	3346	4531521	4528176	0.000000e+00	6180.0
1	TraesCS1B01G008700	chr1B	90.340	2267	195	16	1056	3308	4097751	4100007	0.000000e+00	2952.0
2	TraesCS1B01G008700	chr1B	90.416	2066	156	12	1056	3111	4822408	4820375	0.000000e+00	2680.0
3	TraesCS1B01G008700	chr1B	88.605	1606	157	17	1056	2654	3966731	3968317	0.000000e+00	1929.0
4	TraesCS1B01G008700	chr1B	88.467	1396	138	13	1056	2442	687787602	687788983	0.000000e+00	1664.0
5	TraesCS1B01G008700	chr1B	88.536	1352	137	10	1056	2399	3944553	3945894	0.000000e+00	1622.0
6	TraesCS1B01G008700	chr1B	87.598	1403	154	12	1056	2445	4565903	4564508	0.000000e+00	1609.0
7	TraesCS1B01G008700	chr1B	86.267	1500	159	27	1308	2800	3996857	3998316	0.000000e+00	1585.0
8	TraesCS1B01G008700	chr1B	88.523	1185	91	23	2025	3206	4862468	4861326	0.000000e+00	1393.0
9	TraesCS1B01G008700	chr1B	87.601	992	94	18	88	1060	655345357	655344376	0.000000e+00	1123.0
10	TraesCS1B01G008700	chr1B	85.438	879	91	22	1931	2800	4153904	4154754	0.000000e+00	880.0
11	TraesCS1B01G008700	chr1B	89.433	653	56	8	2698	3346	3968321	3968964	0.000000e+00	811.0
12	TraesCS1B01G008700	chr1B	89.500	200	19	2	3080	3277	4838437	4838238	5.540000e-63	252.0
13	TraesCS1B01G008700	chr1B	90.123	162	9	5	3148	3308	4820378	4820223	1.570000e-48	204.0
14	TraesCS1B01G008700	chr1B	81.034	174	27	5	2835	3005	4564026	4563856	2.090000e-27	134.0
15	TraesCS1B01G008700	chr1D	90.815	2232	190	7	1056	3277	461351	463577	0.000000e+00	2972.0
16	TraesCS1B01G008700	chr1D	90.360	1307	117	6	1056	2355	494549063	494550367	0.000000e+00	1707.0
17	TraesCS1B01G008700	chr3D	87.756	1756	179	11	1056	2803	560055942	560054215	0.000000e+00	2019.0
18	TraesCS1B01G008700	chr3D	89.858	986	73	15	87	1056	568139548	568140522	0.000000e+00	1242.0
19	TraesCS1B01G008700	chr3D	90.323	124	12	0	1	124	568139373	568139496	2.670000e-36	163.0
20	TraesCS1B01G008700	chr3D	76.984	126	23	3	4	128	568139150	568139270	2.150000e-07	67.6
21	TraesCS1B01G008700	chr1A	87.199	1539	182	12	1056	2582	3700241	3698706	0.000000e+00	1736.0
22	TraesCS1B01G008700	chr1A	83.466	502	66	8	2300	2800	27215525	27216010	5.090000e-123	451.0
23	TraesCS1B01G008700	chr1A	79.856	139	22	5	2850	2984	2925841	2925977	2.750000e-16	97.1
24	TraesCS1B01G008700	chr6B	91.176	986	65	12	87	1057	482827200	482828178	0.000000e+00	1319.0
25	TraesCS1B01G008700	chr6B	81.991	211	29	6	1	208	482827030	482827234	1.600000e-38	171.0
26	TraesCS1B01G008700	chr6B	74.372	199	40	10	13	208	280942402	280942592	1.290000e-09	75.0
27	TraesCS1B01G008700	chr6B	74.242	198	39	10	14	208	280951275	280951463	4.630000e-09	73.1
28	TraesCS1B01G008700	chrUn	88.638	1065	91	21	13	1058	393407532	393406479	0.000000e+00	1269.0
29	TraesCS1B01G008700	chrUn	86.842	988	87	25	87	1056	389343105	389342143	0.000000e+00	1064.0
30	TraesCS1B01G008700	chrUn	88.710	124	14	0	1	124	389343276	389343153	5.780000e-33	152.0
31	TraesCS1B01G008700	chr2D	88.716	966	89	11	87	1036	1943024	1942063	0.000000e+00	1162.0
32	TraesCS1B01G008700	chr2A	91.181	669	51	7	395	1060	377069954	377070617	0.000000e+00	902.0
33	TraesCS1B01G008700	chr2A	90.788	673	54	6	389	1057	405281787	405282455	0.000000e+00	893.0
34	TraesCS1B01G008700	chr2A	90.815	675	49	11	389	1057	395831212	395830545	0.000000e+00	891.0
35	TraesCS1B01G008700	chr2A	90.815	675	49	11	389	1057	405351533	405352200	0.000000e+00	891.0
36	TraesCS1B01G008700	chr4A	86.290	124	17	0	1	124	620383835	620383958	5.820000e-28	135.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1B01G008700	chr1B	4528176	4531521	3345	True	6180.000000	6180	100.000000	1	3346	1	chr1B.!!$R1	3345
1	TraesCS1B01G008700	chr1B	4097751	4100007	2256	False	2952.000000	2952	90.340000	1056	3308	1	chr1B.!!$F3	2252
2	TraesCS1B01G008700	chr1B	687787602	687788983	1381	False	1664.000000	1664	88.467000	1056	2442	1	chr1B.!!$F5	1386
3	TraesCS1B01G008700	chr1B	3944553	3945894	1341	False	1622.000000	1622	88.536000	1056	2399	1	chr1B.!!$F1	1343
4	TraesCS1B01G008700	chr1B	3996857	3998316	1459	False	1585.000000	1585	86.267000	1308	2800	1	chr1B.!!$F2	1492
5	TraesCS1B01G008700	chr1B	4820223	4822408	2185	True	1442.000000	2680	90.269500	1056	3308	2	chr1B.!!$R6	2252
6	TraesCS1B01G008700	chr1B	4861326	4862468	1142	True	1393.000000	1393	88.523000	2025	3206	1	chr1B.!!$R3	1181
7	TraesCS1B01G008700	chr1B	3966731	3968964	2233	False	1370.000000	1929	89.019000	1056	3346	2	chr1B.!!$F6	2290
8	TraesCS1B01G008700	chr1B	655344376	655345357	981	True	1123.000000	1123	87.601000	88	1060	1	chr1B.!!$R4	972
9	TraesCS1B01G008700	chr1B	4153904	4154754	850	False	880.000000	880	85.438000	1931	2800	1	chr1B.!!$F4	869
10	TraesCS1B01G008700	chr1B	4563856	4565903	2047	True	871.500000	1609	84.316000	1056	3005	2	chr1B.!!$R5	1949
11	TraesCS1B01G008700	chr1D	461351	463577	2226	False	2972.000000	2972	90.815000	1056	3277	1	chr1D.!!$F1	2221
12	TraesCS1B01G008700	chr1D	494549063	494550367	1304	False	1707.000000	1707	90.360000	1056	2355	1	chr1D.!!$F2	1299
13	TraesCS1B01G008700	chr3D	560054215	560055942	1727	True	2019.000000	2019	87.756000	1056	2803	1	chr3D.!!$R1	1747
14	TraesCS1B01G008700	chr3D	568139150	568140522	1372	False	490.866667	1242	85.721667	1	1056	3	chr3D.!!$F1	1055
15	TraesCS1B01G008700	chr1A	3698706	3700241	1535	True	1736.000000	1736	87.199000	1056	2582	1	chr1A.!!$R1	1526
16	TraesCS1B01G008700	chr6B	482827030	482828178	1148	False	745.000000	1319	86.583500	1	1057	2	chr6B.!!$F3	1056
17	TraesCS1B01G008700	chrUn	393406479	393407532	1053	True	1269.000000	1269	88.638000	13	1058	1	chrUn.!!$R1	1045
18	TraesCS1B01G008700	chrUn	389342143	389343276	1133	True	608.000000	1064	87.776000	1	1056	2	chrUn.!!$R2	1055
19	TraesCS1B01G008700	chr2D	1942063	1943024	961	True	1162.000000	1162	88.716000	87	1036	1	chr2D.!!$R1	949
20	TraesCS1B01G008700	chr2A	377069954	377070617	663	False	902.000000	902	91.181000	395	1060	1	chr2A.!!$F1	665
21	TraesCS1B01G008700	chr2A	405281787	405282455	668	False	893.000000	893	90.788000	389	1057	1	chr2A.!!$F2	668
22	TraesCS1B01G008700	chr2A	395830545	395831212	667	True	891.000000	891	90.815000	389	1057	1	chr2A.!!$R1	668
23	TraesCS1B01G008700	chr2A	405351533	405352200	667	False	891.000000	891	90.815000	389	1057	1	chr2A.!!$F3	668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
785	1119	0.876342	GGCAGCTTAATCGGAGGTCG	60.876	60.0	0.0	0.0	40.9	4.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2654	3052	0.322816	ATCTTGCGCCATGACCAAGT	60.323	50.0	4.18	5.31	37.72	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
51	275	4.430423	GTCGCCGCAAGTGCTTCG	62.430	66.667	1.21	4.90	39.32	3.79
128	441	4.193334	TCGCCGCGGATGTCTCAG	62.193	66.667	33.48	8.60	0.00	3.35
175	488	6.985188	AAGAAAAGTTTATAGCATCTCGCA	57.015	33.333	0.00	0.00	46.13	5.10
228	541	4.168014	GACGCATCAAATTCATCAGCAAA	58.832	39.130	0.00	0.00	0.00	3.68
240	553	8.976986	AATTCATCAGCAAAATCTTCTGTAAC	57.023	30.769	0.00	0.00	0.00	2.50
320	633	7.553760	ACACACATACTCAAAATCAGCATCATA	59.446	33.333	0.00	0.00	0.00	2.15
496	824	3.588842	TGAGGGTTCATCTTCAAGTCCAT	59.411	43.478	0.00	0.00	0.00	3.41
498	826	3.331889	AGGGTTCATCTTCAAGTCCATGT	59.668	43.478	0.00	0.00	0.00	3.21
508	836	3.476552	TCAAGTCCATGTTCAGAACACC	58.523	45.455	18.49	7.00	45.50	4.16
509	837	2.554032	CAAGTCCATGTTCAGAACACCC	59.446	50.000	18.49	6.67	45.50	4.61
615	944	7.342026	AGGCCGAACTATCCATTTTATTTTCTT	59.658	33.333	0.00	0.00	0.00	2.52
635	965	6.602410	TCTTCTTGAGACTTGATCACATCT	57.398	37.500	7.49	7.49	0.00	2.90
665	997	6.734502	TGATTGGTGCATGAATCCATAAAT	57.265	33.333	14.69	0.00	0.00	1.40
696	1029	3.755905	TGGCGAGATTATTGTTTTGCTCA	59.244	39.130	0.00	0.00	0.00	4.26
700	1033	5.163814	GCGAGATTATTGTTTTGCTCAGAGT	60.164	40.000	0.00	0.00	0.00	3.24
785	1119	0.876342	GGCAGCTTAATCGGAGGTCG	60.876	60.000	0.00	0.00	40.90	4.79
954	1290	6.785191	TCTACAAATTTTCTCCGCATCATTC	58.215	36.000	0.00	0.00	0.00	2.67
964	1300	1.466866	CCGCATCATTCTGTGTGCTTG	60.467	52.381	0.00	0.00	34.67	4.01
969	1305	5.221880	GCATCATTCTGTGTGCTTGTTTTA	58.778	37.500	0.00	0.00	34.29	1.52
970	1306	5.865552	GCATCATTCTGTGTGCTTGTTTTAT	59.134	36.000	0.00	0.00	34.29	1.40
974	1311	8.129161	TCATTCTGTGTGCTTGTTTTATTTTG	57.871	30.769	0.00	0.00	0.00	2.44
1085	1424	0.452987	CCAACAACATGGCATCTCCG	59.547	55.000	0.00	0.00	37.80	4.63
1171	1510	8.521176	TGACTCCTTGTTATTCAACTCTAGTAC	58.479	37.037	0.00	0.00	35.56	2.73
1205	1550	2.722094	ACAGAAGACACTTGGTTTGCA	58.278	42.857	0.00	0.00	0.00	4.08
1228	1573	2.382882	TGCCAATTGTTCTTGTGGTGA	58.617	42.857	4.43	0.00	33.43	4.02
1252	1597	1.889170	TCACCATTGTTGCCGCAATTA	59.111	42.857	9.46	0.76	37.00	1.40
1263	1608	6.393990	TGTTGCCGCAATTATTGTCTTAATT	58.606	32.000	9.46	0.00	33.16	1.40
1302	1647	5.367945	AGAGAAAACCACAAGAAGGTGTA	57.632	39.130	0.00	0.00	39.86	2.90
1318	1663	5.746990	AGGTGTAACTACTGAAGCAAGAT	57.253	39.130	0.00	0.00	36.74	2.40
1351	1696	7.358770	TCTGTTTGGAATTTTGATGGAAGAA	57.641	32.000	0.00	0.00	0.00	2.52
1369	1714	8.709272	TGGAAGAATGGCATTTGATGATATTA	57.291	30.769	14.93	0.00	0.00	0.98
1396	1741	2.875633	CAACAAAAGACTTCGACGACG	58.124	47.619	0.00	0.00	41.26	5.12
1437	1782	5.129815	AGGAGGATACGGCAAAGTATACAAA	59.870	40.000	5.50	0.00	39.74	2.83
1450	1795	9.243637	GCAAAGTATACAAATCACAACTTCAAA	57.756	29.630	5.50	0.00	0.00	2.69
1490	1838	2.275318	GAAGAAGCTTCATCAGACCGG	58.725	52.381	27.57	0.00	0.00	5.28
1723	2071	1.068748	CAACTGATGTGGCTCAAGCAC	60.069	52.381	4.13	1.54	44.36	4.40
1746	2094	5.880332	ACTATCTTATTTGCACCACGAATGT	59.120	36.000	0.00	0.00	34.09	2.71
1851	2199	3.084039	CACAGCAAGGATTCTTAAGCCA	58.916	45.455	0.00	0.00	40.13	4.75
2061	2422	2.093447	GGTGTGGTTGTGCTAGAGCTAT	60.093	50.000	2.72	0.00	42.66	2.97
2118	2479	1.332686	GTTTGTCGAGTGGGGAACAAC	59.667	52.381	0.00	0.00	0.00	3.32
2119	2480	0.542333	TTGTCGAGTGGGGAACAACA	59.458	50.000	0.00	0.00	0.00	3.33
2172	2536	2.477189	CCGACAACACCAACAACAGAAC	60.477	50.000	0.00	0.00	0.00	3.01
2184	2548	6.204882	ACCAACAACAGAACAGAATAGCTTAC	59.795	38.462	0.00	0.00	0.00	2.34
2331	2695	2.161855	CACTTACATTGCAGCAAGGGA	58.838	47.619	23.03	13.05	28.83	4.20
2332	2696	2.163010	CACTTACATTGCAGCAAGGGAG	59.837	50.000	23.03	20.35	28.83	4.30
2333	2697	2.224867	ACTTACATTGCAGCAAGGGAGT	60.225	45.455	23.03	20.92	28.83	3.85
2334	2698	1.825090	TACATTGCAGCAAGGGAGTG	58.175	50.000	23.03	13.58	28.83	3.51
2394	2770	3.432186	CCAAGGTCTATCATTGCGGAAGA	60.432	47.826	0.00	0.00	36.63	2.87
2586	2984	4.552365	CGCCTCGTGGGATGGCAT	62.552	66.667	0.00	0.00	46.39	4.40
2593	2991	0.465705	CGTGGGATGGCATGAGTACT	59.534	55.000	3.81	0.00	0.00	2.73
2604	3002	1.405463	CATGAGTACTGGCTGTAGCGA	59.595	52.381	0.00	0.00	43.26	4.93
2627	3025	2.191128	AGAACTTGAGGCATGGTCAC	57.809	50.000	0.00	0.00	29.24	3.67
2654	3052	0.679640	GGGATGGCATGTCCGTGAAA	60.680	55.000	3.81	0.00	36.58	2.69
2800	3199	3.008485	GTGTCCACTGATTCTTCTCCCTT	59.992	47.826	0.00	0.00	0.00	3.95
2860	3698	4.154015	TGGTCGATGCATAAACAAGAACAG	59.846	41.667	0.00	0.00	0.00	3.16
2861	3699	4.154195	GGTCGATGCATAAACAAGAACAGT	59.846	41.667	0.00	0.00	0.00	3.55
2957	3797	2.224161	GGCTGTAGGGCAAGAGTATGAG	60.224	54.545	0.00	0.00	40.53	2.90
2984	3824	5.125097	CCTTATCCTTATGATGGAGCATTGC	59.875	44.000	0.00	0.00	36.99	3.56
3018	3858	2.516227	AGTCCTCGTCCTTCAGATGA	57.484	50.000	0.00	0.00	38.23	2.92
3021	3861	3.772025	AGTCCTCGTCCTTCAGATGAAAT	59.228	43.478	0.00	0.00	40.06	2.17
3157	4000	9.602568	GATGAGATGATATGATATGCAAAGTCT	57.397	33.333	0.00	0.00	0.00	3.24
3194	4037	2.165437	AGTGAGAGCTAAGCTACTGCAC	59.835	50.000	7.98	6.92	39.88	4.57
3231	4075	6.537355	AGAGTTTGGTATGACATATCCCATG	58.463	40.000	3.24	0.00	0.00	3.66
3286	4130	6.430000	TCACCTAAAAATTCAACTCACCTAGC	59.570	38.462	0.00	0.00	0.00	3.42
3288	4132	7.606456	CACCTAAAAATTCAACTCACCTAGCTA	59.394	37.037	0.00	0.00	0.00	3.32
3289	4133	7.824779	ACCTAAAAATTCAACTCACCTAGCTAG	59.175	37.037	14.20	14.20	0.00	3.42
3290	4134	7.824779	CCTAAAAATTCAACTCACCTAGCTAGT	59.175	37.037	19.31	5.12	0.00	2.57
3291	4135	7.440523	AAAAATTCAACTCACCTAGCTAGTG	57.559	36.000	19.31	16.17	36.54	2.74
3292	4136	5.746990	AATTCAACTCACCTAGCTAGTGT	57.253	39.130	19.31	13.46	36.58	3.55
3308	4175	7.411486	AGCTAGTGTAATCACAGACATACTT	57.589	36.000	0.00	0.00	46.01	2.24
3309	4176	7.841956	AGCTAGTGTAATCACAGACATACTTT	58.158	34.615	0.00	0.00	46.01	2.66
3310	4177	8.314751	AGCTAGTGTAATCACAGACATACTTTT	58.685	33.333	0.00	0.00	46.01	2.27
3311	4178	8.936864	GCTAGTGTAATCACAGACATACTTTTT	58.063	33.333	1.36	0.00	46.01	1.94

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
51	275	2.064014	CTTTTTCTCGTACCGGACCAC	58.936	52.381	9.46	1.41	0.00	4.16
168	481	0.033228	GCCATGTAGAGCTGCGAGAT	59.967	55.000	0.00	0.00	0.00	2.75
175	488	2.988010	TTTGATCGCCATGTAGAGCT	57.012	45.000	0.00	0.00	0.00	4.09
200	513	1.977594	GAATTTGATGCGTCCGCGGT	61.978	55.000	27.15	4.54	45.51	5.68
228	541	7.673926	ACCCCAAATGTAATGTTACAGAAGATT	59.326	33.333	10.90	0.00	45.80	2.40
240	553	3.703556	TGTATGCCACCCCAAATGTAATG	59.296	43.478	0.00	0.00	0.00	1.90
320	633	1.812235	TGCTTCGCATGTGATGACTT	58.188	45.000	22.39	0.00	31.71	3.01
360	673	9.046296	CACCCTTTACATCATACAATCTACTTC	57.954	37.037	0.00	0.00	0.00	3.01
369	682	6.806668	TCTCATCACCCTTTACATCATACA	57.193	37.500	0.00	0.00	0.00	2.29
496	824	2.294074	CGGAAAAGGGTGTTCTGAACA	58.706	47.619	18.69	18.69	39.52	3.18
498	826	1.314730	GCGGAAAAGGGTGTTCTGAA	58.685	50.000	0.00	0.00	33.89	3.02
508	836	3.475774	CGTCGGTCGCGGAAAAGG	61.476	66.667	6.13	0.00	0.00	3.11
509	837	2.429571	TCGTCGGTCGCGGAAAAG	60.430	61.111	6.13	0.00	39.67	2.27
615	944	5.990120	TGAGATGTGATCAAGTCTCAAGA	57.010	39.130	26.76	12.77	42.81	3.02
665	997	4.081752	ACAATAATCTCGCCATGCCAAAAA	60.082	37.500	0.00	0.00	0.00	1.94
696	1029	5.928264	GGCAAAAAGAATATGCAAACACTCT	59.072	36.000	0.00	0.00	41.80	3.24
700	1033	5.469421	CCAAGGCAAAAAGAATATGCAAACA	59.531	36.000	0.00	0.00	41.80	2.83
931	1267	6.690098	CAGAATGATGCGGAGAAAATTTGTAG	59.310	38.462	0.00	0.00	39.69	2.74
954	1290	9.635632	CAAATACAAAATAAAACAAGCACACAG	57.364	29.630	0.00	0.00	0.00	3.66
1085	1424	5.812127	AGAAACCAACTTGTTGAAGCATTTC	59.188	36.000	14.30	13.50	31.68	2.17
1171	1510	5.049405	GTGTCTTCTGTTTATGGTGACCAAG	60.049	44.000	9.06	0.22	36.95	3.61
1205	1550	4.128643	CACCACAAGAACAATTGGCAAAT	58.871	39.130	10.83	0.00	34.36	2.32
1228	1573	0.031994	GCGGCAACAATGGTGAAACT	59.968	50.000	0.79	0.00	36.74	2.66
1263	1608	8.985805	GGTTTTCTCTTTTTACGACTGAGAATA	58.014	33.333	0.00	0.00	41.47	1.75
1302	1647	9.384764	GAAAATAGGTATCTTGCTTCAGTAGTT	57.615	33.333	0.00	0.00	0.00	2.24
1351	1696	7.620491	TGCCCTTATAATATCATCAAATGCCAT	59.380	33.333	0.00	0.00	0.00	4.40
1369	1714	4.215613	GTCGAAGTCTTTTGTTGCCCTTAT	59.784	41.667	0.00	0.00	0.00	1.73
1381	1726	2.545526	TGTACTCGTCGTCGAAGTCTTT	59.454	45.455	6.19	0.00	45.61	2.52
1396	1741	4.162320	TCCTCCTGTTCCAATGATGTACTC	59.838	45.833	0.00	0.00	0.00	2.59
1437	1782	2.028130	TGCCCGTTTTGAAGTTGTGAT	58.972	42.857	0.00	0.00	0.00	3.06
1490	1838	4.848357	TCTTTCATCATCCAACTCTTCCC	58.152	43.478	0.00	0.00	0.00	3.97
1723	2071	6.363577	ACATTCGTGGTGCAAATAAGATAG	57.636	37.500	0.00	0.00	0.00	2.08
1746	2094	6.135819	TCTCGATGGATTATAGGTGGACTA	57.864	41.667	0.00	0.00	35.80	2.59
1851	2199	3.755378	GTGCACTCCAGTTTGATGAATCT	59.245	43.478	10.32	0.00	0.00	2.40
1902	2250	7.709149	AGAAAGGTTATACAAGTACGTACCT	57.291	36.000	21.80	6.55	0.00	3.08
1907	2255	9.630098	TGTAAGAAGAAAGGTTATACAAGTACG	57.370	33.333	0.00	0.00	0.00	3.67
2061	2422	2.390696	CATTGGATGCTTCCCCATCAA	58.609	47.619	15.62	3.75	42.63	2.57
2331	2695	8.319146	TCAGATCATATATCAACATGCATCACT	58.681	33.333	0.00	0.00	0.00	3.41
2332	2696	8.488651	TCAGATCATATATCAACATGCATCAC	57.511	34.615	0.00	0.00	0.00	3.06
2333	2697	9.681062	ATTCAGATCATATATCAACATGCATCA	57.319	29.630	0.00	0.00	0.00	3.07
2394	2770	5.497474	AGGCAAAACATAGACCTAAATCGT	58.503	37.500	0.00	0.00	0.00	3.73
2405	2782	3.589988	AGTGACTCGAGGCAAAACATAG	58.410	45.455	25.66	0.00	0.00	2.23
2586	2984	0.809385	GTCGCTACAGCCAGTACTCA	59.191	55.000	0.00	0.00	37.91	3.41
2593	2991	2.168496	AGTTCTAAGTCGCTACAGCCA	58.832	47.619	0.00	0.00	37.91	4.75
2604	3002	3.327757	TGACCATGCCTCAAGTTCTAAGT	59.672	43.478	0.00	0.00	0.00	2.24
2627	3025	4.175337	ATGCCATCCCACGTCCCG	62.175	66.667	0.00	0.00	0.00	5.14
2654	3052	0.322816	ATCTTGCGCCATGACCAAGT	60.323	50.000	4.18	5.31	37.72	3.16
2766	3165	5.344743	TCAGTGGACACTCAGGATATTTC	57.655	43.478	1.21	0.00	40.20	2.17
2800	3199	0.188587	ACTCATCCCGAGGCATAGGA	59.811	55.000	0.00	0.00	46.98	2.94
2915	3754	3.550030	CCCCGTGTAAGTTCTTTTGCTTG	60.550	47.826	0.00	0.00	0.00	4.01
2957	3797	4.287067	TGCTCCATCATAAGGATAAGGACC	59.713	45.833	0.00	0.00	33.95	4.46
2984	3824	3.504134	CGAGGACTACATACTCCTGGATG	59.496	52.174	0.00	0.00	37.00	3.51
3157	4000	2.101415	CTCACTGTTGTCTGTCACCTGA	59.899	50.000	0.00	0.00	0.00	3.86
3194	4037	8.200120	TCATACCAAACTCTTCATGTCTATGAG	58.800	37.037	0.00	0.00	43.76	2.90
3242	4086	7.317722	AGGTGAATCAGTACCTACTTTTCTT	57.682	36.000	0.00	0.00	45.20	2.52
3257	4101	7.505585	AGGTGAGTTGAATTTTTAGGTGAATCA	59.494	33.333	0.00	0.00	0.00	2.57
3313	4180	9.517609	GTTCTTAGTATCTCTAATTTCTCGCAA	57.482	33.333	0.00	0.00	37.89	4.85
3314	4181	8.683615	TGTTCTTAGTATCTCTAATTTCTCGCA	58.316	33.333	0.00	0.00	37.89	5.10
3315	4182	9.517609	TTGTTCTTAGTATCTCTAATTTCTCGC	57.482	33.333	0.00	0.00	37.89	5.03

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.