Multiple sequence alignment - TraesCS1B01G007500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G007500 chr1B 100.000 5214 0 0 1 5214 4204068 4209281 0.000000e+00 9629.0
1 TraesCS1B01G007500 chr1B 94.401 2661 94 15 1 2625 4524888 4522247 0.000000e+00 4037.0
2 TraesCS1B01G007500 chr1B 93.721 2596 111 13 66 2624 4815419 4812839 0.000000e+00 3843.0
3 TraesCS1B01G007500 chr1B 93.550 1938 112 9 2885 4819 4812840 4810913 0.000000e+00 2874.0
4 TraesCS1B01G007500 chr1B 86.085 1078 132 14 1548 2615 3576553 3575484 0.000000e+00 1144.0
5 TraesCS1B01G007500 chr1B 91.852 810 59 6 3147 3954 4521902 4521098 0.000000e+00 1123.0
6 TraesCS1B01G007500 chr1B 84.925 796 93 13 3701 4470 3574561 3573767 0.000000e+00 780.0
7 TraesCS1B01G007500 chr1B 82.276 914 111 32 679 1546 3577506 3576598 0.000000e+00 743.0
8 TraesCS1B01G007500 chr1B 95.250 400 18 1 4815 5214 4803548 4803150 2.650000e-177 632.0
9 TraesCS1B01G007500 chr1B 96.198 263 7 1 2888 3147 4522246 4521984 1.340000e-115 427.0
10 TraesCS1B01G007500 chr1B 84.962 266 38 2 2620 2884 539035131 539035395 8.610000e-68 268.0
11 TraesCS1B01G007500 chr1B 93.464 153 10 0 1 153 4815566 4815414 1.460000e-55 228.0
12 TraesCS1B01G007500 chr1B 86.538 104 7 6 2620 2720 83952105 83952204 1.990000e-19 108.0
13 TraesCS1B01G007500 chr1B 90.278 72 7 0 2619 2690 14438249 14438178 1.550000e-15 95.3
14 TraesCS1B01G007500 chr1B 88.636 44 5 0 4804 4847 4562496 4562453 3.000000e-03 54.7
15 TraesCS1B01G007500 chr1D 93.021 2665 135 22 1 2621 468306 470963 0.000000e+00 3843.0
16 TraesCS1B01G007500 chr1D 91.540 1643 105 14 2887 4503 626499 624865 0.000000e+00 2233.0
17 TraesCS1B01G007500 chr1D 91.461 1417 93 14 2887 4278 470967 472380 0.000000e+00 1921.0
18 TraesCS1B01G007500 chr1D 85.092 1630 190 28 2888 4471 799041 797419 0.000000e+00 1615.0
19 TraesCS1B01G007500 chr1D 91.141 1174 65 16 411 1546 628800 627628 0.000000e+00 1555.0
20 TraesCS1B01G007500 chr1D 91.304 1081 86 6 1548 2621 627582 626503 0.000000e+00 1469.0
21 TraesCS1B01G007500 chr1D 84.962 1463 175 18 2885 4310 895208 893754 0.000000e+00 1441.0
22 TraesCS1B01G007500 chr1D 86.338 1076 128 15 1552 2615 800122 799054 0.000000e+00 1155.0
23 TraesCS1B01G007500 chr1D 85.978 1084 132 14 1548 2624 896277 895207 0.000000e+00 1142.0
24 TraesCS1B01G007500 chr1D 89.716 846 67 7 4369 5214 724794 723969 0.000000e+00 1062.0
25 TraesCS1B01G007500 chr1D 82.205 916 107 29 679 1546 801074 800167 0.000000e+00 737.0
26 TraesCS1B01G007500 chr1D 94.575 424 21 2 3951 4374 725898 725477 0.000000e+00 654.0
27 TraesCS1B01G007500 chr1D 87.726 554 43 9 2978 3507 728296 727744 1.590000e-174 623.0
28 TraesCS1B01G007500 chr1D 86.618 411 49 6 900 1306 897236 896828 2.860000e-122 449.0
29 TraesCS1B01G007500 chr1D 85.327 443 40 12 2 420 689561 689120 8.020000e-118 435.0
30 TraesCS1B01G007500 chr1D 85.156 256 23 7 1304 1546 896575 896322 1.120000e-61 248.0
31 TraesCS1B01G007500 chr1D 97.500 40 1 0 4523 4562 624867 624828 9.370000e-08 69.4
32 TraesCS1B01G007500 chr1D 87.500 56 7 0 4792 4847 457695 457750 1.210000e-06 65.8
33 TraesCS1B01G007500 chr1D 100.000 31 0 0 4983 5013 456251 456281 2.030000e-04 58.4
34 TraesCS1B01G007500 chr1A 90.364 1650 128 20 2888 4512 3463899 3462256 0.000000e+00 2137.0
35 TraesCS1B01G007500 chr1A 89.631 1601 103 26 2 1546 3466621 3465028 0.000000e+00 1978.0
36 TraesCS1B01G007500 chr1A 84.207 1640 200 27 2885 4473 2849591 2851222 0.000000e+00 1539.0
37 TraesCS1B01G007500 chr1A 90.826 1090 85 12 1548 2628 3464982 3463899 0.000000e+00 1445.0
38 TraesCS1B01G007500 chr1A 85.912 1086 131 16 1545 2615 2848504 2849582 0.000000e+00 1138.0
39 TraesCS1B01G007500 chr1A 85.714 1085 134 16 1545 2615 2549919 2550996 0.000000e+00 1125.0
40 TraesCS1B01G007500 chr1A 83.841 953 107 15 2885 3812 2551004 2551934 0.000000e+00 863.0
41 TraesCS1B01G007500 chr1A 82.125 800 109 15 739 1508 2549035 2549830 0.000000e+00 654.0
42 TraesCS1B01G007500 chr1A 86.738 279 27 4 2612 2884 581422474 581422200 8.490000e-78 302.0
43 TraesCS1B01G007500 chr1A 87.255 102 7 5 2619 2718 498222357 498222260 1.530000e-20 111.0
44 TraesCS1B01G007500 chr5A 79.268 1148 193 38 3545 4676 470227029 470225911 0.000000e+00 760.0
45 TraesCS1B01G007500 chr5A 78.240 841 133 34 679 1482 470244553 470243726 1.300000e-135 494.0
46 TraesCS1B01G007500 chr5A 84.444 90 13 1 2617 2705 560609950 560610039 2.590000e-13 87.9
47 TraesCS1B01G007500 chr5B 78.114 827 127 38 679 1468 436284909 436284100 4.720000e-130 475.0
48 TraesCS1B01G007500 chr5B 81.761 159 25 3 509 665 406540421 406540577 4.240000e-26 130.0
49 TraesCS1B01G007500 chr5D 77.163 867 145 37 679 1508 368367664 368366814 6.150000e-124 455.0
50 TraesCS1B01G007500 chr2B 90.943 265 21 2 2620 2884 331243591 331243330 2.310000e-93 353.0
51 TraesCS1B01G007500 chr2A 88.123 261 25 1 2620 2874 31823276 31823016 6.560000e-79 305.0
52 TraesCS1B01G007500 chr2A 76.718 262 55 6 407 665 465330728 465330470 1.960000e-29 141.0
53 TraesCS1B01G007500 chr4A 80.864 162 26 5 407 566 531257800 531257958 7.090000e-24 122.0
54 TraesCS1B01G007500 chr4A 87.356 87 9 2 2613 2699 494052430 494052514 1.190000e-16 99.0
55 TraesCS1B01G007500 chr7A 75.725 276 45 14 407 665 126144280 126144010 9.170000e-23 119.0
56 TraesCS1B01G007500 chr6D 85.714 105 8 6 2619 2720 141978121 141978021 2.570000e-18 104.0
57 TraesCS1B01G007500 chr3A 86.000 100 11 3 568 665 489910511 489910413 2.570000e-18 104.0
58 TraesCS1B01G007500 chr3D 93.939 66 4 0 2627 2692 1377584 1377519 3.320000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G007500 chr1B 4204068 4209281 5213 False 9629.000000 9629 100.000000 1 5214 1 chr1B.!!$F1 5213
1 TraesCS1B01G007500 chr1B 4810913 4815566 4653 True 2315.000000 3843 93.578333 1 4819 3 chr1B.!!$R6 4818
2 TraesCS1B01G007500 chr1B 4521098 4524888 3790 True 1862.333333 4037 94.150333 1 3954 3 chr1B.!!$R5 3953
3 TraesCS1B01G007500 chr1B 3573767 3577506 3739 True 889.000000 1144 84.428667 679 4470 3 chr1B.!!$R4 3791
4 TraesCS1B01G007500 chr1D 468306 472380 4074 False 2882.000000 3843 92.241000 1 4278 2 chr1D.!!$F2 4277
5 TraesCS1B01G007500 chr1D 624828 628800 3972 True 1331.600000 2233 92.871250 411 4562 4 chr1D.!!$R2 4151
6 TraesCS1B01G007500 chr1D 797419 801074 3655 True 1169.000000 1615 84.545000 679 4471 3 chr1D.!!$R4 3792
7 TraesCS1B01G007500 chr1D 893754 897236 3482 True 820.000000 1441 85.678500 900 4310 4 chr1D.!!$R5 3410
8 TraesCS1B01G007500 chr1D 723969 728296 4327 True 779.666667 1062 90.672333 2978 5214 3 chr1D.!!$R3 2236
9 TraesCS1B01G007500 chr1A 3462256 3466621 4365 True 1853.333333 2137 90.273667 2 4512 3 chr1A.!!$R3 4510
10 TraesCS1B01G007500 chr1A 2848504 2851222 2718 False 1338.500000 1539 85.059500 1545 4473 2 chr1A.!!$F2 2928
11 TraesCS1B01G007500 chr1A 2549035 2551934 2899 False 880.666667 1125 83.893333 739 3812 3 chr1A.!!$F1 3073
12 TraesCS1B01G007500 chr5A 470225911 470227029 1118 True 760.000000 760 79.268000 3545 4676 1 chr5A.!!$R1 1131
13 TraesCS1B01G007500 chr5A 470243726 470244553 827 True 494.000000 494 78.240000 679 1482 1 chr5A.!!$R2 803
14 TraesCS1B01G007500 chr5B 436284100 436284909 809 True 475.000000 475 78.114000 679 1468 1 chr5B.!!$R1 789
15 TraesCS1B01G007500 chr5D 368366814 368367664 850 True 455.000000 455 77.163000 679 1508 1 chr5D.!!$R1 829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 348 1.808411 TGGAGGAAGCGTCAATCAAC 58.192 50.000 1.14 0.00 0.00 3.18 F
666 776 3.685139 AGACCATTGTATATGCCCTCG 57.315 47.619 0.00 0.00 0.00 4.63 F
1102 1247 1.476891 ACGTAGATGTCAATCCGCAGT 59.523 47.619 0.00 0.00 32.77 4.40 F
2715 3226 0.328926 TGCATCCATCCAACTCAGCA 59.671 50.000 0.00 0.00 0.00 4.41 F
2882 3393 0.252284 TCTCTTGTCCTCAGTCCCCC 60.252 60.000 0.00 0.00 0.00 5.40 F
3932 4706 0.451783 AAATAAGCTTTGCCGCGGAG 59.548 50.000 33.48 19.46 34.40 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1097 1242 2.561733 TACCTTCTCATTCGACTGCG 57.438 50.000 0.00 0.00 39.35 5.18 R
1660 2137 2.781757 TCTCTTGGGCCATTGATCAGAT 59.218 45.455 7.26 0.00 0.00 2.90 R
2865 3376 0.119155 ATGGGGGACTGAGGACAAGA 59.881 55.000 0.00 0.00 0.00 3.02 R
3927 4701 0.458889 TTGTATACGTGGTGCTCCGC 60.459 55.000 8.33 8.33 40.52 5.54 R
3978 6220 0.813184 CATTGGAGGACCATGTGCAC 59.187 55.000 10.75 10.75 46.34 4.57 R
4892 7874 0.250295 TTCCAACACGCTCAAGAGGG 60.250 55.000 12.00 12.00 45.63 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 5.895636 TTGTAGTCAATGAATGGCGAATT 57.104 34.783 0.00 0.00 39.19 2.17
206 288 3.734926 AGCCCAAATTCCCCACAATTAT 58.265 40.909 0.00 0.00 0.00 1.28
222 304 7.201767 CCCACAATTATCATGGAAACTCTCTTC 60.202 40.741 0.00 0.00 35.33 2.87
226 308 8.733458 CAATTATCATGGAAACTCTCTTCAACA 58.267 33.333 0.00 0.00 0.00 3.33
266 348 1.808411 TGGAGGAAGCGTCAATCAAC 58.192 50.000 1.14 0.00 0.00 3.18
352 457 5.168569 CGTAAATCAGCTCCACACTTAAGA 58.831 41.667 10.09 0.00 0.00 2.10
367 472 7.706179 CCACACTTAAGAAACATTGACACAATT 59.294 33.333 10.09 0.00 0.00 2.32
629 739 5.485353 CCTCCACCTCTGCAATTATCCTATA 59.515 44.000 0.00 0.00 0.00 1.31
666 776 3.685139 AGACCATTGTATATGCCCTCG 57.315 47.619 0.00 0.00 0.00 4.63
676 786 5.265989 TGTATATGCCCTCGTACATCCATA 58.734 41.667 0.00 0.00 0.00 2.74
677 787 5.897250 TGTATATGCCCTCGTACATCCATAT 59.103 40.000 0.00 0.00 32.50 1.78
1024 1169 5.928976 TGGGAGGTGATTATGTTGTCATAG 58.071 41.667 0.00 0.00 37.75 2.23
1067 1212 5.176592 GTGTATAACTTTCCACCTCACCTC 58.823 45.833 0.00 0.00 0.00 3.85
1097 1242 5.608676 TCGATAGACGTAGATGTCAATCC 57.391 43.478 4.76 0.00 42.67 3.01
1098 1243 4.151867 TCGATAGACGTAGATGTCAATCCG 59.848 45.833 4.76 3.13 42.67 4.18
1102 1247 1.476891 ACGTAGATGTCAATCCGCAGT 59.523 47.619 0.00 0.00 32.77 4.40
1470 1885 1.544246 TCATGTACACACACTCTCCCG 59.456 52.381 0.00 0.00 37.54 5.14
1510 1937 4.662278 TCTCTTTACCTTTTCATGTGGGG 58.338 43.478 0.00 0.00 0.00 4.96
1603 2079 7.812648 TCACATATTTAAACCACGGAGAAAAG 58.187 34.615 0.00 0.00 0.00 2.27
1660 2137 8.956426 CCTAAATCATAGTTGGTCAAGCTAAAA 58.044 33.333 0.00 0.00 0.00 1.52
1786 2266 7.226441 TGATCCTTACATACAAAGCATGCTAT 58.774 34.615 23.00 12.36 0.00 2.97
1865 2348 9.303537 GAGACTTATACTGACATACCAACTTTC 57.696 37.037 0.00 0.00 0.00 2.62
1867 2350 9.654663 GACTTATACTGACATACCAACTTTCTT 57.345 33.333 0.00 0.00 0.00 2.52
1894 2391 1.134965 ACGCTTCACACCTATCAGAGC 60.135 52.381 0.00 0.00 0.00 4.09
2098 2602 7.232534 ACTCAACAAGGGCTATGAAAACAAATA 59.767 33.333 0.00 0.00 0.00 1.40
2621 3132 8.429641 TCTGGTTCCCATATAGTTTTCTGTATC 58.570 37.037 0.00 0.00 33.07 2.24
2622 3133 8.331931 TGGTTCCCATATAGTTTTCTGTATCT 57.668 34.615 0.00 0.00 33.07 1.98
2623 3134 8.778059 TGGTTCCCATATAGTTTTCTGTATCTT 58.222 33.333 0.00 0.00 33.07 2.40
2646 3157 9.901172 TCTTACATTCTTAAGAAGTTAATCCCC 57.099 33.333 21.75 0.00 35.55 4.81
2647 3158 9.681062 CTTACATTCTTAAGAAGTTAATCCCCA 57.319 33.333 21.75 0.00 37.48 4.96
2648 3159 7.939784 ACATTCTTAAGAAGTTAATCCCCAC 57.060 36.000 21.75 0.00 37.48 4.61
2649 3160 7.699878 ACATTCTTAAGAAGTTAATCCCCACT 58.300 34.615 21.75 0.00 37.48 4.00
2650 3161 8.832735 ACATTCTTAAGAAGTTAATCCCCACTA 58.167 33.333 21.75 0.00 37.48 2.74
2651 3162 9.110502 CATTCTTAAGAAGTTAATCCCCACTAC 57.889 37.037 21.75 0.00 37.48 2.73
2652 3163 7.801893 TCTTAAGAAGTTAATCCCCACTACA 57.198 36.000 1.68 0.00 0.00 2.74
2653 3164 8.209802 TCTTAAGAAGTTAATCCCCACTACAA 57.790 34.615 1.68 0.00 0.00 2.41
2654 3165 8.098912 TCTTAAGAAGTTAATCCCCACTACAAC 58.901 37.037 1.68 0.00 0.00 3.32
2655 3166 5.175388 AGAAGTTAATCCCCACTACAACC 57.825 43.478 0.00 0.00 0.00 3.77
2656 3167 4.600111 AGAAGTTAATCCCCACTACAACCA 59.400 41.667 0.00 0.00 0.00 3.67
2657 3168 5.073965 AGAAGTTAATCCCCACTACAACCAA 59.926 40.000 0.00 0.00 0.00 3.67
2658 3169 5.530176 AGTTAATCCCCACTACAACCAAT 57.470 39.130 0.00 0.00 0.00 3.16
2659 3170 5.899278 AGTTAATCCCCACTACAACCAATT 58.101 37.500 0.00 0.00 0.00 2.32
2660 3171 5.949952 AGTTAATCCCCACTACAACCAATTC 59.050 40.000 0.00 0.00 0.00 2.17
2661 3172 4.675063 AATCCCCACTACAACCAATTCT 57.325 40.909 0.00 0.00 0.00 2.40
2662 3173 3.713826 TCCCCACTACAACCAATTCTC 57.286 47.619 0.00 0.00 0.00 2.87
2663 3174 3.256704 TCCCCACTACAACCAATTCTCT 58.743 45.455 0.00 0.00 0.00 3.10
2664 3175 3.263425 TCCCCACTACAACCAATTCTCTC 59.737 47.826 0.00 0.00 0.00 3.20
2665 3176 3.264450 CCCCACTACAACCAATTCTCTCT 59.736 47.826 0.00 0.00 0.00 3.10
2666 3177 4.469945 CCCCACTACAACCAATTCTCTCTA 59.530 45.833 0.00 0.00 0.00 2.43
2667 3178 5.420409 CCCACTACAACCAATTCTCTCTAC 58.580 45.833 0.00 0.00 0.00 2.59
2668 3179 5.046591 CCCACTACAACCAATTCTCTCTACA 60.047 44.000 0.00 0.00 0.00 2.74
2669 3180 6.352222 CCCACTACAACCAATTCTCTCTACAT 60.352 42.308 0.00 0.00 0.00 2.29
2670 3181 6.536582 CCACTACAACCAATTCTCTCTACATG 59.463 42.308 0.00 0.00 0.00 3.21
2671 3182 6.036517 CACTACAACCAATTCTCTCTACATGC 59.963 42.308 0.00 0.00 0.00 4.06
2672 3183 4.910195 ACAACCAATTCTCTCTACATGCA 58.090 39.130 0.00 0.00 0.00 3.96
2673 3184 4.697352 ACAACCAATTCTCTCTACATGCAC 59.303 41.667 0.00 0.00 0.00 4.57
2674 3185 4.558226 ACCAATTCTCTCTACATGCACA 57.442 40.909 0.00 0.00 0.00 4.57
2675 3186 4.511527 ACCAATTCTCTCTACATGCACAG 58.488 43.478 0.00 0.00 0.00 3.66
2676 3187 4.223700 ACCAATTCTCTCTACATGCACAGA 59.776 41.667 0.00 0.00 0.00 3.41
2677 3188 5.181009 CCAATTCTCTCTACATGCACAGAA 58.819 41.667 0.00 0.00 0.00 3.02
2678 3189 5.821470 CCAATTCTCTCTACATGCACAGAAT 59.179 40.000 0.00 0.00 33.05 2.40
2679 3190 6.018098 CCAATTCTCTCTACATGCACAGAATC 60.018 42.308 0.00 0.00 30.94 2.52
2680 3191 4.662468 TCTCTCTACATGCACAGAATCC 57.338 45.455 0.00 0.00 0.00 3.01
2681 3192 4.026052 TCTCTCTACATGCACAGAATCCA 58.974 43.478 0.00 0.00 0.00 3.41
2682 3193 4.118410 CTCTCTACATGCACAGAATCCAC 58.882 47.826 0.00 0.00 0.00 4.02
2683 3194 3.515104 TCTCTACATGCACAGAATCCACA 59.485 43.478 0.00 0.00 0.00 4.17
2684 3195 4.162888 TCTCTACATGCACAGAATCCACAT 59.837 41.667 0.00 0.00 0.00 3.21
2685 3196 4.445453 TCTACATGCACAGAATCCACATC 58.555 43.478 0.00 0.00 0.00 3.06
2686 3197 3.076079 ACATGCACAGAATCCACATCA 57.924 42.857 0.00 0.00 0.00 3.07
2687 3198 3.628008 ACATGCACAGAATCCACATCAT 58.372 40.909 0.00 0.00 0.00 2.45
2688 3199 3.630769 ACATGCACAGAATCCACATCATC 59.369 43.478 0.00 0.00 0.00 2.92
2689 3200 3.353370 TGCACAGAATCCACATCATCA 57.647 42.857 0.00 0.00 0.00 3.07
2690 3201 3.893521 TGCACAGAATCCACATCATCAT 58.106 40.909 0.00 0.00 0.00 2.45
2691 3202 3.881089 TGCACAGAATCCACATCATCATC 59.119 43.478 0.00 0.00 0.00 2.92
2692 3203 3.059120 GCACAGAATCCACATCATCATCG 60.059 47.826 0.00 0.00 0.00 3.84
2693 3204 4.374399 CACAGAATCCACATCATCATCGA 58.626 43.478 0.00 0.00 0.00 3.59
2694 3205 4.210746 CACAGAATCCACATCATCATCGAC 59.789 45.833 0.00 0.00 0.00 4.20
2695 3206 4.141869 ACAGAATCCACATCATCATCGACA 60.142 41.667 0.00 0.00 0.00 4.35
2696 3207 4.995487 CAGAATCCACATCATCATCGACAT 59.005 41.667 0.00 0.00 0.00 3.06
2697 3208 4.995487 AGAATCCACATCATCATCGACATG 59.005 41.667 0.00 0.00 0.00 3.21
2698 3209 2.486918 TCCACATCATCATCGACATGC 58.513 47.619 0.00 0.00 0.00 4.06
2699 3210 2.158928 TCCACATCATCATCGACATGCA 60.159 45.455 0.00 0.00 0.00 3.96
2700 3211 2.812011 CCACATCATCATCGACATGCAT 59.188 45.455 0.00 0.00 0.00 3.96
2701 3212 3.120304 CCACATCATCATCGACATGCATC 60.120 47.826 0.00 0.00 0.00 3.91
2702 3213 3.072211 ACATCATCATCGACATGCATCC 58.928 45.455 0.00 0.00 0.00 3.51
2703 3214 2.914695 TCATCATCGACATGCATCCA 57.085 45.000 0.00 0.00 0.00 3.41
2704 3215 3.412237 TCATCATCGACATGCATCCAT 57.588 42.857 0.00 0.00 0.00 3.41
2705 3216 3.332034 TCATCATCGACATGCATCCATC 58.668 45.455 0.00 0.00 0.00 3.51
2706 3217 2.174363 TCATCGACATGCATCCATCC 57.826 50.000 0.00 0.00 0.00 3.51
2707 3218 1.417145 TCATCGACATGCATCCATCCA 59.583 47.619 0.00 0.00 0.00 3.41
2708 3219 2.158784 TCATCGACATGCATCCATCCAA 60.159 45.455 0.00 0.00 0.00 3.53
2709 3220 1.667236 TCGACATGCATCCATCCAAC 58.333 50.000 0.00 0.00 0.00 3.77
2710 3221 1.210234 TCGACATGCATCCATCCAACT 59.790 47.619 0.00 0.00 0.00 3.16
2711 3222 1.600957 CGACATGCATCCATCCAACTC 59.399 52.381 0.00 0.00 0.00 3.01
2712 3223 2.646930 GACATGCATCCATCCAACTCA 58.353 47.619 0.00 0.00 0.00 3.41
2713 3224 2.617308 GACATGCATCCATCCAACTCAG 59.383 50.000 0.00 0.00 0.00 3.35
2714 3225 1.337071 CATGCATCCATCCAACTCAGC 59.663 52.381 0.00 0.00 0.00 4.26
2715 3226 0.328926 TGCATCCATCCAACTCAGCA 59.671 50.000 0.00 0.00 0.00 4.41
2716 3227 1.272037 TGCATCCATCCAACTCAGCAA 60.272 47.619 0.00 0.00 0.00 3.91
2717 3228 1.820519 GCATCCATCCAACTCAGCAAA 59.179 47.619 0.00 0.00 0.00 3.68
2718 3229 2.429610 GCATCCATCCAACTCAGCAAAT 59.570 45.455 0.00 0.00 0.00 2.32
2719 3230 3.490419 GCATCCATCCAACTCAGCAAATC 60.490 47.826 0.00 0.00 0.00 2.17
2720 3231 2.726821 TCCATCCAACTCAGCAAATCC 58.273 47.619 0.00 0.00 0.00 3.01
2721 3232 1.402968 CCATCCAACTCAGCAAATCCG 59.597 52.381 0.00 0.00 0.00 4.18
2722 3233 1.098050 ATCCAACTCAGCAAATCCGC 58.902 50.000 0.00 0.00 0.00 5.54
2723 3234 0.960364 TCCAACTCAGCAAATCCGCC 60.960 55.000 0.00 0.00 0.00 6.13
2724 3235 1.135315 CAACTCAGCAAATCCGCCG 59.865 57.895 0.00 0.00 0.00 6.46
2725 3236 2.690778 AACTCAGCAAATCCGCCGC 61.691 57.895 0.00 0.00 0.00 6.53
2726 3237 3.880846 CTCAGCAAATCCGCCGCC 61.881 66.667 0.00 0.00 0.00 6.13
2727 3238 4.408821 TCAGCAAATCCGCCGCCT 62.409 61.111 0.00 0.00 0.00 5.52
2728 3239 3.880846 CAGCAAATCCGCCGCCTC 61.881 66.667 0.00 0.00 0.00 4.70
2729 3240 4.408821 AGCAAATCCGCCGCCTCA 62.409 61.111 0.00 0.00 0.00 3.86
2730 3241 3.211963 GCAAATCCGCCGCCTCAT 61.212 61.111 0.00 0.00 0.00 2.90
2731 3242 3.025619 CAAATCCGCCGCCTCATC 58.974 61.111 0.00 0.00 0.00 2.92
2732 3243 1.819208 CAAATCCGCCGCCTCATCA 60.819 57.895 0.00 0.00 0.00 3.07
2733 3244 1.077787 AAATCCGCCGCCTCATCAA 60.078 52.632 0.00 0.00 0.00 2.57
2734 3245 0.679640 AAATCCGCCGCCTCATCAAA 60.680 50.000 0.00 0.00 0.00 2.69
2735 3246 0.679640 AATCCGCCGCCTCATCAAAA 60.680 50.000 0.00 0.00 0.00 2.44
2736 3247 1.097547 ATCCGCCGCCTCATCAAAAG 61.098 55.000 0.00 0.00 0.00 2.27
2737 3248 1.745115 CCGCCGCCTCATCAAAAGA 60.745 57.895 0.00 0.00 0.00 2.52
2738 3249 1.305219 CCGCCGCCTCATCAAAAGAA 61.305 55.000 0.00 0.00 0.00 2.52
2739 3250 0.734889 CGCCGCCTCATCAAAAGAAT 59.265 50.000 0.00 0.00 0.00 2.40
2740 3251 1.133025 CGCCGCCTCATCAAAAGAATT 59.867 47.619 0.00 0.00 0.00 2.17
2741 3252 2.354510 CGCCGCCTCATCAAAAGAATTA 59.645 45.455 0.00 0.00 0.00 1.40
2742 3253 3.695816 GCCGCCTCATCAAAAGAATTAC 58.304 45.455 0.00 0.00 0.00 1.89
2743 3254 3.128589 GCCGCCTCATCAAAAGAATTACA 59.871 43.478 0.00 0.00 0.00 2.41
2744 3255 4.202050 GCCGCCTCATCAAAAGAATTACAT 60.202 41.667 0.00 0.00 0.00 2.29
2745 3256 5.276270 CCGCCTCATCAAAAGAATTACATG 58.724 41.667 0.00 0.00 0.00 3.21
2746 3257 5.066375 CCGCCTCATCAAAAGAATTACATGA 59.934 40.000 0.00 0.00 0.00 3.07
2747 3258 6.238842 CCGCCTCATCAAAAGAATTACATGAT 60.239 38.462 0.00 0.00 0.00 2.45
2748 3259 7.198390 CGCCTCATCAAAAGAATTACATGATT 58.802 34.615 0.00 0.00 0.00 2.57
2749 3260 7.703621 CGCCTCATCAAAAGAATTACATGATTT 59.296 33.333 0.00 0.00 0.00 2.17
2761 3272 9.396022 AGAATTACATGATTTAAATCGTCTGGT 57.604 29.630 18.12 15.43 38.26 4.00
2770 3281 9.004717 TGATTTAAATCGTCTGGTTTAATCACA 57.995 29.630 20.45 0.00 38.26 3.58
2771 3282 9.274065 GATTTAAATCGTCTGGTTTAATCACAC 57.726 33.333 12.27 0.00 31.90 3.82
2772 3283 7.731882 TTAAATCGTCTGGTTTAATCACACA 57.268 32.000 0.00 0.00 0.00 3.72
2773 3284 6.817765 AAATCGTCTGGTTTAATCACACAT 57.182 33.333 0.00 0.00 0.00 3.21
2774 3285 6.422776 AATCGTCTGGTTTAATCACACATC 57.577 37.500 0.00 0.00 0.00 3.06
2775 3286 3.924073 TCGTCTGGTTTAATCACACATCG 59.076 43.478 0.00 0.00 0.00 3.84
2776 3287 3.062099 CGTCTGGTTTAATCACACATCGG 59.938 47.826 0.00 0.00 0.00 4.18
2777 3288 4.000988 GTCTGGTTTAATCACACATCGGT 58.999 43.478 0.00 0.00 0.00 4.69
2778 3289 4.454504 GTCTGGTTTAATCACACATCGGTT 59.545 41.667 0.00 0.00 0.00 4.44
2779 3290 4.693566 TCTGGTTTAATCACACATCGGTTC 59.306 41.667 0.00 0.00 0.00 3.62
2780 3291 3.754323 TGGTTTAATCACACATCGGTTCC 59.246 43.478 0.00 0.00 0.00 3.62
2781 3292 4.007659 GGTTTAATCACACATCGGTTCCT 58.992 43.478 0.00 0.00 0.00 3.36
2782 3293 4.094442 GGTTTAATCACACATCGGTTCCTC 59.906 45.833 0.00 0.00 0.00 3.71
2783 3294 4.819105 TTAATCACACATCGGTTCCTCT 57.181 40.909 0.00 0.00 0.00 3.69
2784 3295 3.703001 AATCACACATCGGTTCCTCTT 57.297 42.857 0.00 0.00 0.00 2.85
2785 3296 2.743636 TCACACATCGGTTCCTCTTC 57.256 50.000 0.00 0.00 0.00 2.87
2786 3297 1.275291 TCACACATCGGTTCCTCTTCC 59.725 52.381 0.00 0.00 0.00 3.46
2787 3298 1.276421 CACACATCGGTTCCTCTTCCT 59.724 52.381 0.00 0.00 0.00 3.36
2788 3299 1.550976 ACACATCGGTTCCTCTTCCTC 59.449 52.381 0.00 0.00 0.00 3.71
2789 3300 1.827969 CACATCGGTTCCTCTTCCTCT 59.172 52.381 0.00 0.00 0.00 3.69
2790 3301 2.234908 CACATCGGTTCCTCTTCCTCTT 59.765 50.000 0.00 0.00 0.00 2.85
2791 3302 2.498078 ACATCGGTTCCTCTTCCTCTTC 59.502 50.000 0.00 0.00 0.00 2.87
2792 3303 2.606751 TCGGTTCCTCTTCCTCTTCT 57.393 50.000 0.00 0.00 0.00 2.85
2793 3304 2.171840 TCGGTTCCTCTTCCTCTTCTG 58.828 52.381 0.00 0.00 0.00 3.02
2794 3305 2.171840 CGGTTCCTCTTCCTCTTCTGA 58.828 52.381 0.00 0.00 0.00 3.27
2795 3306 2.563179 CGGTTCCTCTTCCTCTTCTGAA 59.437 50.000 0.00 0.00 0.00 3.02
2796 3307 3.006967 CGGTTCCTCTTCCTCTTCTGAAA 59.993 47.826 0.00 0.00 0.00 2.69
2797 3308 4.320023 GGTTCCTCTTCCTCTTCTGAAAC 58.680 47.826 0.00 0.00 0.00 2.78
2798 3309 4.320023 GTTCCTCTTCCTCTTCTGAAACC 58.680 47.826 0.00 0.00 0.00 3.27
2799 3310 2.907042 TCCTCTTCCTCTTCTGAAACCC 59.093 50.000 0.00 0.00 0.00 4.11
2800 3311 2.639839 CCTCTTCCTCTTCTGAAACCCA 59.360 50.000 0.00 0.00 0.00 4.51
2801 3312 3.558109 CCTCTTCCTCTTCTGAAACCCAC 60.558 52.174 0.00 0.00 0.00 4.61
2802 3313 2.037251 TCTTCCTCTTCTGAAACCCACG 59.963 50.000 0.00 0.00 0.00 4.94
2803 3314 1.712056 TCCTCTTCTGAAACCCACGA 58.288 50.000 0.00 0.00 0.00 4.35
2804 3315 1.618837 TCCTCTTCTGAAACCCACGAG 59.381 52.381 0.00 0.00 0.00 4.18
2805 3316 1.618837 CCTCTTCTGAAACCCACGAGA 59.381 52.381 0.00 0.00 0.00 4.04
2806 3317 2.610727 CCTCTTCTGAAACCCACGAGAC 60.611 54.545 0.00 0.00 0.00 3.36
2807 3318 2.035961 CTCTTCTGAAACCCACGAGACA 59.964 50.000 0.00 0.00 0.00 3.41
2808 3319 2.632996 TCTTCTGAAACCCACGAGACAT 59.367 45.455 0.00 0.00 0.00 3.06
2809 3320 3.071023 TCTTCTGAAACCCACGAGACATT 59.929 43.478 0.00 0.00 0.00 2.71
2810 3321 3.485463 TCTGAAACCCACGAGACATTT 57.515 42.857 0.00 0.00 0.00 2.32
2811 3322 4.610605 TCTGAAACCCACGAGACATTTA 57.389 40.909 0.00 0.00 0.00 1.40
2812 3323 4.312443 TCTGAAACCCACGAGACATTTAC 58.688 43.478 0.00 0.00 0.00 2.01
2813 3324 4.039973 TCTGAAACCCACGAGACATTTACT 59.960 41.667 0.00 0.00 0.00 2.24
2814 3325 4.312443 TGAAACCCACGAGACATTTACTC 58.688 43.478 0.00 0.00 0.00 2.59
2815 3326 4.039973 TGAAACCCACGAGACATTTACTCT 59.960 41.667 0.00 0.00 32.87 3.24
2816 3327 4.618920 AACCCACGAGACATTTACTCTT 57.381 40.909 0.00 0.00 32.87 2.85
2817 3328 4.189639 ACCCACGAGACATTTACTCTTC 57.810 45.455 0.00 0.00 32.87 2.87
2818 3329 3.833070 ACCCACGAGACATTTACTCTTCT 59.167 43.478 0.00 0.00 32.87 2.85
2819 3330 4.177026 CCCACGAGACATTTACTCTTCTG 58.823 47.826 0.00 0.00 32.87 3.02
2820 3331 4.082190 CCCACGAGACATTTACTCTTCTGA 60.082 45.833 0.00 0.00 32.87 3.27
2821 3332 5.470368 CCACGAGACATTTACTCTTCTGAA 58.530 41.667 0.00 0.00 32.87 3.02
2822 3333 5.926542 CCACGAGACATTTACTCTTCTGAAA 59.073 40.000 0.00 0.00 32.87 2.69
2823 3334 6.128795 CCACGAGACATTTACTCTTCTGAAAC 60.129 42.308 0.00 0.00 32.87 2.78
2824 3335 5.927115 ACGAGACATTTACTCTTCTGAAACC 59.073 40.000 0.00 0.00 32.87 3.27
2825 3336 5.348997 CGAGACATTTACTCTTCTGAAACCC 59.651 44.000 0.00 0.00 32.87 4.11
2826 3337 6.187727 AGACATTTACTCTTCTGAAACCCA 57.812 37.500 0.00 0.00 0.00 4.51
2827 3338 6.784031 AGACATTTACTCTTCTGAAACCCAT 58.216 36.000 0.00 0.00 0.00 4.00
2828 3339 6.656693 AGACATTTACTCTTCTGAAACCCATG 59.343 38.462 0.00 0.00 0.00 3.66
2829 3340 6.542821 ACATTTACTCTTCTGAAACCCATGA 58.457 36.000 0.00 0.00 0.00 3.07
2830 3341 6.656693 ACATTTACTCTTCTGAAACCCATGAG 59.343 38.462 0.00 0.00 0.00 2.90
2831 3342 6.433847 TTTACTCTTCTGAAACCCATGAGA 57.566 37.500 8.52 0.00 0.00 3.27
2832 3343 4.278975 ACTCTTCTGAAACCCATGAGAC 57.721 45.455 8.52 0.00 0.00 3.36
2833 3344 3.648067 ACTCTTCTGAAACCCATGAGACA 59.352 43.478 8.52 0.00 0.00 3.41
2834 3345 4.288105 ACTCTTCTGAAACCCATGAGACAT 59.712 41.667 8.52 0.00 0.00 3.06
2835 3346 5.222007 ACTCTTCTGAAACCCATGAGACATT 60.222 40.000 8.52 0.00 0.00 2.71
2836 3347 5.248640 TCTTCTGAAACCCATGAGACATTC 58.751 41.667 0.00 0.00 0.00 2.67
2837 3348 4.916041 TCTGAAACCCATGAGACATTCT 57.084 40.909 0.00 0.00 0.00 2.40
2838 3349 4.836825 TCTGAAACCCATGAGACATTCTC 58.163 43.478 0.00 0.00 43.65 2.87
2839 3350 3.944015 CTGAAACCCATGAGACATTCTCC 59.056 47.826 0.00 0.00 42.73 3.71
2840 3351 3.588842 TGAAACCCATGAGACATTCTCCT 59.411 43.478 0.00 0.00 42.73 3.69
2841 3352 3.922171 AACCCATGAGACATTCTCCTC 57.078 47.619 0.00 0.00 42.73 3.71
2842 3353 3.127791 ACCCATGAGACATTCTCCTCT 57.872 47.619 0.00 0.00 42.73 3.69
2843 3354 3.458831 ACCCATGAGACATTCTCCTCTT 58.541 45.455 0.00 0.00 42.73 2.85
2844 3355 3.848975 ACCCATGAGACATTCTCCTCTTT 59.151 43.478 0.00 0.00 42.73 2.52
2845 3356 5.032846 ACCCATGAGACATTCTCCTCTTTA 58.967 41.667 0.00 0.00 42.73 1.85
2846 3357 5.488919 ACCCATGAGACATTCTCCTCTTTAA 59.511 40.000 0.00 0.00 42.73 1.52
2847 3358 6.159398 ACCCATGAGACATTCTCCTCTTTAAT 59.841 38.462 0.00 0.00 42.73 1.40
2848 3359 7.348274 ACCCATGAGACATTCTCCTCTTTAATA 59.652 37.037 0.00 0.00 42.73 0.98
2849 3360 7.659390 CCCATGAGACATTCTCCTCTTTAATAC 59.341 40.741 0.00 0.00 42.73 1.89
2850 3361 7.659390 CCATGAGACATTCTCCTCTTTAATACC 59.341 40.741 0.00 0.00 42.73 2.73
2851 3362 7.125792 TGAGACATTCTCCTCTTTAATACCC 57.874 40.000 0.76 0.00 42.73 3.69
2852 3363 6.163135 AGACATTCTCCTCTTTAATACCCG 57.837 41.667 0.00 0.00 0.00 5.28
2853 3364 5.897824 AGACATTCTCCTCTTTAATACCCGA 59.102 40.000 0.00 0.00 0.00 5.14
2854 3365 6.041069 AGACATTCTCCTCTTTAATACCCGAG 59.959 42.308 0.00 0.00 0.00 4.63
2855 3366 5.897824 ACATTCTCCTCTTTAATACCCGAGA 59.102 40.000 0.00 0.00 0.00 4.04
2856 3367 5.848833 TTCTCCTCTTTAATACCCGAGAC 57.151 43.478 0.00 0.00 0.00 3.36
2857 3368 3.881688 TCTCCTCTTTAATACCCGAGACG 59.118 47.826 0.00 0.00 0.00 4.18
2858 3369 3.881688 CTCCTCTTTAATACCCGAGACGA 59.118 47.826 0.00 0.00 0.00 4.20
2859 3370 4.272489 TCCTCTTTAATACCCGAGACGAA 58.728 43.478 0.00 0.00 0.00 3.85
2860 3371 4.891756 TCCTCTTTAATACCCGAGACGAAT 59.108 41.667 0.00 0.00 0.00 3.34
2861 3372 5.361857 TCCTCTTTAATACCCGAGACGAATT 59.638 40.000 0.00 0.00 0.00 2.17
2862 3373 5.462398 CCTCTTTAATACCCGAGACGAATTG 59.538 44.000 0.00 0.00 0.00 2.32
2863 3374 5.969423 TCTTTAATACCCGAGACGAATTGT 58.031 37.500 0.00 0.00 0.00 2.71
2875 3386 3.914312 GACGAATTGTCTCTTGTCCTCA 58.086 45.455 0.00 0.00 44.58 3.86
2876 3387 3.919216 ACGAATTGTCTCTTGTCCTCAG 58.081 45.455 0.00 0.00 0.00 3.35
2877 3388 3.322254 ACGAATTGTCTCTTGTCCTCAGT 59.678 43.478 0.00 0.00 0.00 3.41
2878 3389 3.923461 CGAATTGTCTCTTGTCCTCAGTC 59.077 47.826 0.00 0.00 0.00 3.51
2879 3390 3.971245 ATTGTCTCTTGTCCTCAGTCC 57.029 47.619 0.00 0.00 0.00 3.85
2880 3391 1.633774 TGTCTCTTGTCCTCAGTCCC 58.366 55.000 0.00 0.00 0.00 4.46
2881 3392 0.899019 GTCTCTTGTCCTCAGTCCCC 59.101 60.000 0.00 0.00 0.00 4.81
2882 3393 0.252284 TCTCTTGTCCTCAGTCCCCC 60.252 60.000 0.00 0.00 0.00 5.40
2883 3394 0.545309 CTCTTGTCCTCAGTCCCCCA 60.545 60.000 0.00 0.00 0.00 4.96
2918 3429 9.780186 GTTAGAGGCATTATTGGACTAAGTAAT 57.220 33.333 0.00 0.00 0.00 1.89
3204 3801 0.679321 TGTGTGTTCCTGCAGCAACA 60.679 50.000 19.30 19.30 0.00 3.33
3219 3816 3.782369 CAGCAACATCATCGAATGAAACG 59.218 43.478 4.12 0.00 43.50 3.60
3361 3969 6.319658 GTCCAACACATAATCCATTCATGACT 59.680 38.462 0.00 0.00 0.00 3.41
3399 4007 6.268847 TGCAAAAACAGTAATTTATGAGGGGT 59.731 34.615 0.00 0.00 0.00 4.95
3411 4019 3.959495 ATGAGGGGTATGCATGACTTT 57.041 42.857 10.16 0.00 0.00 2.66
3412 4020 3.737559 TGAGGGGTATGCATGACTTTT 57.262 42.857 10.16 0.00 0.00 2.27
3520 4135 6.000219 GGTATGGATGCACACATAGAAAGAT 59.000 40.000 11.31 0.00 36.35 2.40
3704 4460 9.043079 GGTTACTAAGTACCATGCTTTCTATTC 57.957 37.037 0.00 0.00 0.00 1.75
3775 4540 8.956426 CCCAAGATTCTTGCTAATAACAACTTA 58.044 33.333 19.04 0.00 0.00 2.24
3792 4566 7.807977 ACAACTTATTTTCTGCTCTTCTTGA 57.192 32.000 0.00 0.00 0.00 3.02
3793 4567 7.869800 ACAACTTATTTTCTGCTCTTCTTGAG 58.130 34.615 0.00 0.00 45.33 3.02
3794 4568 7.716998 ACAACTTATTTTCTGCTCTTCTTGAGA 59.283 33.333 0.00 0.00 45.39 3.27
3836 4610 5.066893 CGAATGTCATCAATCCCTTGTTGAT 59.933 40.000 3.28 0.00 44.74 2.57
3927 4701 4.690280 ACATTTTCCAAATAAGCTTTGCCG 59.310 37.500 3.20 0.00 0.00 5.69
3932 4706 0.451783 AAATAAGCTTTGCCGCGGAG 59.548 50.000 33.48 19.46 34.40 4.63
3978 6220 6.591834 ACTGGATTCGTGAATTACTTGAAGAG 59.408 38.462 0.00 0.00 0.00 2.85
4006 6248 1.306654 TCCTCCAATGGGTAGCGGT 60.307 57.895 0.00 0.00 34.93 5.68
4039 6308 7.335171 CCCGATTATGATGATAAGAAATCTGCA 59.665 37.037 0.00 0.00 0.00 4.41
4069 6338 7.304735 TCAAACACATTCAGAATTACAATCCG 58.695 34.615 0.00 0.00 0.00 4.18
4476 7458 3.161067 AGACCATATGATCGGACCTCTG 58.839 50.000 3.65 0.00 0.00 3.35
4695 7677 1.218316 GTCTGGCAAGGACCCGTAG 59.782 63.158 0.00 0.00 0.00 3.51
4696 7678 1.077805 TCTGGCAAGGACCCGTAGA 59.922 57.895 0.00 0.00 0.00 2.59
4771 7753 4.756642 GCCGAGATCAATATTTGGATCACA 59.243 41.667 14.79 0.00 41.84 3.58
4796 7778 5.009010 CCGCTTTCTGCAAATTATGGACTAT 59.991 40.000 0.00 0.00 43.06 2.12
4820 7802 5.797051 TCGTATATTACAAAGGGGCATACC 58.203 41.667 0.00 0.00 39.11 2.73
4825 7807 0.849094 ACAAAGGGGCATACCTGGGA 60.849 55.000 0.00 0.00 40.87 4.37
4831 7813 3.071314 AGGGGCATACCTGGGAATATTT 58.929 45.455 0.00 0.00 40.04 1.40
4833 7815 3.437931 GGGGCATACCTGGGAATATTTGT 60.438 47.826 0.00 0.00 40.03 2.83
4840 7822 3.258123 ACCTGGGAATATTTGTGTGTTGC 59.742 43.478 0.00 0.00 0.00 4.17
4854 7836 3.663564 GTGTGTTGCATGTTATGAACACG 59.336 43.478 19.71 2.29 45.50 4.49
4874 7856 1.801395 GCATAGAAAGCGCCACTCGTA 60.801 52.381 2.29 0.00 41.07 3.43
4884 7866 2.670509 GCGCCACTCGTAGAAGTTTACT 60.671 50.000 0.00 0.00 41.07 2.24
4890 7872 6.387465 CCACTCGTAGAAGTTTACTGAATCA 58.613 40.000 0.00 0.00 34.09 2.57
4891 7873 6.866770 CCACTCGTAGAAGTTTACTGAATCAA 59.133 38.462 0.00 0.00 34.09 2.57
4892 7874 7.148787 CCACTCGTAGAAGTTTACTGAATCAAC 60.149 40.741 0.00 0.00 34.09 3.18
4893 7875 6.867293 ACTCGTAGAAGTTTACTGAATCAACC 59.133 38.462 0.00 0.00 34.09 3.77
4894 7876 6.161381 TCGTAGAAGTTTACTGAATCAACCC 58.839 40.000 0.00 0.00 0.00 4.11
4895 7877 6.014840 TCGTAGAAGTTTACTGAATCAACCCT 60.015 38.462 0.00 0.00 0.00 4.34
4896 7878 6.310711 CGTAGAAGTTTACTGAATCAACCCTC 59.689 42.308 0.00 0.00 0.00 4.30
4897 7879 6.441088 AGAAGTTTACTGAATCAACCCTCT 57.559 37.500 0.00 0.00 0.00 3.69
4898 7880 6.842676 AGAAGTTTACTGAATCAACCCTCTT 58.157 36.000 0.00 0.00 0.00 2.85
4904 7886 1.347707 TGAATCAACCCTCTTGAGCGT 59.652 47.619 0.00 0.00 0.00 5.07
4916 7898 2.612212 TCTTGAGCGTGTTGGAACTTTC 59.388 45.455 0.00 0.00 0.00 2.62
4927 7909 0.875059 GGAACTTTCCGTCAGCCAAG 59.125 55.000 0.00 0.00 37.65 3.61
4946 7928 1.212195 AGTGTGATCATGATGCTGCCT 59.788 47.619 14.30 0.00 0.00 4.75
4967 7949 5.741388 CTGGTTGTACAGGCTATGAATTC 57.259 43.478 0.00 0.00 34.84 2.17
4970 7952 4.816925 GGTTGTACAGGCTATGAATTCCTC 59.183 45.833 2.27 0.00 0.00 3.71
4977 7959 6.430007 ACAGGCTATGAATTCCTCATTTTCT 58.570 36.000 2.27 0.00 42.46 2.52
4983 7965 5.046910 TGAATTCCTCATTTTCTTGCGAC 57.953 39.130 2.27 0.00 0.00 5.19
5007 7989 1.939934 TGACTTCCAACAAGACTTGCG 59.060 47.619 15.24 6.67 0.00 4.85
5025 8007 0.250553 CGGTCCACCAGGCTAAACAA 60.251 55.000 0.00 0.00 35.14 2.83
5036 8018 7.122055 CCACCAGGCTAAACAAAATAATAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
5039 8021 7.649306 CCAGGCTAAACAAAATAATAGTCATGC 59.351 37.037 0.00 0.00 0.00 4.06
5040 8022 8.190122 CAGGCTAAACAAAATAATAGTCATGCA 58.810 33.333 0.00 0.00 0.00 3.96
5043 8025 8.482429 GCTAAACAAAATAATAGTCATGCATGC 58.518 33.333 22.25 11.82 0.00 4.06
5044 8026 9.518906 CTAAACAAAATAATAGTCATGCATGCA 57.481 29.630 25.04 25.04 0.00 3.96
5045 8027 8.774890 AAACAAAATAATAGTCATGCATGCAA 57.225 26.923 26.68 8.17 0.00 4.08
5046 8028 7.997107 ACAAAATAATAGTCATGCATGCAAG 57.003 32.000 26.68 21.38 0.00 4.01
5047 8029 6.477688 ACAAAATAATAGTCATGCATGCAAGC 59.522 34.615 26.68 17.02 0.00 4.01
5082 8064 5.782047 AGTTGTCATCTTCTCTGAGACAAG 58.218 41.667 6.92 3.41 46.21 3.16
5098 8080 4.718961 AGACAAGGGTTCCATATATGTGC 58.281 43.478 11.73 1.65 0.00 4.57
5130 8112 3.007398 AGAGATTGACTGACCTGGAACAC 59.993 47.826 0.00 0.00 0.00 3.32
5194 8176 3.954258 AGTTATTAGGGGTGCATTGAAGC 59.046 43.478 0.00 0.00 0.00 3.86
5195 8177 2.530460 ATTAGGGGTGCATTGAAGCA 57.470 45.000 0.00 0.00 43.35 3.91
5201 8183 0.681175 GGTGCATTGAAGCAACCCTT 59.319 50.000 0.00 0.00 46.35 3.95
5208 8190 5.046448 TGCATTGAAGCAACCCTTGAATTAT 60.046 36.000 0.00 0.00 42.46 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.039011 GACTACAATCTAGGGCCAGGAA 58.961 50.000 6.18 0.00 0.00 3.36
68 69 8.175925 TGTTGGAATGACTCACAAATTTCATA 57.824 30.769 0.00 0.00 0.00 2.15
192 274 6.204555 AGTTTCCATGATAATTGTGGGGAAT 58.795 36.000 0.00 0.00 33.38 3.01
206 288 5.877012 GCTATGTTGAAGAGAGTTTCCATGA 59.123 40.000 0.00 0.00 0.00 3.07
226 308 8.497745 CCTCCATTTAATCCATATACCAGCTAT 58.502 37.037 0.00 0.00 0.00 2.97
324 429 4.106197 GTGTGGAGCTGATTTACGTCTAG 58.894 47.826 0.00 0.00 0.00 2.43
629 739 5.957771 TGGTCTTATCTTAGAAGTGCCAT 57.042 39.130 0.00 0.00 30.78 4.40
676 786 8.596293 ACAATGGACTTGATTTACATCCAAAAT 58.404 29.630 0.00 0.00 39.93 1.82
677 787 7.961351 ACAATGGACTTGATTTACATCCAAAA 58.039 30.769 0.00 0.00 39.93 2.44
755 872 8.196771 TGGTTTACATCCAATTAATGATTGCTC 58.803 33.333 6.93 0.00 43.11 4.26
837 956 4.586001 GGGTAGTCATCCGGTGAACTAATA 59.414 45.833 0.00 0.00 38.90 0.98
1024 1169 4.083484 ACACAAAAAGCATAGTAAGACCGC 60.083 41.667 0.00 0.00 0.00 5.68
1067 1212 6.431278 ACATCTACGTCTATCGATTCAACAG 58.569 40.000 1.71 0.00 42.86 3.16
1097 1242 2.561733 TACCTTCTCATTCGACTGCG 57.438 50.000 0.00 0.00 39.35 5.18
1098 1243 2.930682 GGTTACCTTCTCATTCGACTGC 59.069 50.000 0.00 0.00 0.00 4.40
1102 1247 8.801882 AAAATATTGGTTACCTTCTCATTCGA 57.198 30.769 2.07 0.00 0.00 3.71
1510 1937 6.034898 CACTCACCAAGAAATCAACAAAACAC 59.965 38.462 0.00 0.00 0.00 3.32
1660 2137 2.781757 TCTCTTGGGCCATTGATCAGAT 59.218 45.455 7.26 0.00 0.00 2.90
1766 2246 9.740239 ATTTTGATAGCATGCTTTGTATGTAAG 57.260 29.630 28.02 0.00 0.00 2.34
1786 2266 9.388346 GTGAATATGTTGTTCACGTTATTTTGA 57.612 29.630 3.59 0.00 43.96 2.69
1894 2391 5.393962 GGGTGAAACAAGATTTGATTCTCG 58.606 41.667 11.39 0.00 41.39 4.04
2110 2614 8.741841 CAATGGGGAATTTTTCATGCTATTTTT 58.258 29.630 0.00 0.00 0.00 1.94
2621 3132 9.681062 TGGGGATTAACTTCTTAAGAATGTAAG 57.319 33.333 18.02 8.78 33.01 2.34
2622 3133 9.457436 GTGGGGATTAACTTCTTAAGAATGTAA 57.543 33.333 18.02 17.32 33.01 2.41
2623 3134 8.832735 AGTGGGGATTAACTTCTTAAGAATGTA 58.167 33.333 18.02 10.40 33.01 2.29
2624 3135 7.699878 AGTGGGGATTAACTTCTTAAGAATGT 58.300 34.615 18.02 14.48 33.01 2.71
2625 3136 9.110502 GTAGTGGGGATTAACTTCTTAAGAATG 57.889 37.037 18.02 13.91 33.01 2.67
2626 3137 8.832735 TGTAGTGGGGATTAACTTCTTAAGAAT 58.167 33.333 18.02 7.41 33.01 2.40
2627 3138 8.209802 TGTAGTGGGGATTAACTTCTTAAGAA 57.790 34.615 16.85 16.85 0.00 2.52
2628 3139 7.801893 TGTAGTGGGGATTAACTTCTTAAGA 57.198 36.000 0.00 0.00 0.00 2.10
2629 3140 7.336176 GGTTGTAGTGGGGATTAACTTCTTAAG 59.664 40.741 0.00 0.00 0.00 1.85
2630 3141 7.170277 GGTTGTAGTGGGGATTAACTTCTTAA 58.830 38.462 0.00 0.00 0.00 1.85
2631 3142 6.272792 TGGTTGTAGTGGGGATTAACTTCTTA 59.727 38.462 0.00 0.00 0.00 2.10
2632 3143 5.073965 TGGTTGTAGTGGGGATTAACTTCTT 59.926 40.000 0.00 0.00 0.00 2.52
2633 3144 4.600111 TGGTTGTAGTGGGGATTAACTTCT 59.400 41.667 0.00 0.00 0.00 2.85
2634 3145 4.913784 TGGTTGTAGTGGGGATTAACTTC 58.086 43.478 0.00 0.00 0.00 3.01
2635 3146 5.327737 TTGGTTGTAGTGGGGATTAACTT 57.672 39.130 0.00 0.00 0.00 2.66
2636 3147 5.530176 ATTGGTTGTAGTGGGGATTAACT 57.470 39.130 0.00 0.00 0.00 2.24
2637 3148 5.949952 AGAATTGGTTGTAGTGGGGATTAAC 59.050 40.000 0.00 0.00 0.00 2.01
2638 3149 6.011981 AGAGAATTGGTTGTAGTGGGGATTAA 60.012 38.462 0.00 0.00 0.00 1.40
2639 3150 5.491078 AGAGAATTGGTTGTAGTGGGGATTA 59.509 40.000 0.00 0.00 0.00 1.75
2640 3151 4.292306 AGAGAATTGGTTGTAGTGGGGATT 59.708 41.667 0.00 0.00 0.00 3.01
2641 3152 3.852578 AGAGAATTGGTTGTAGTGGGGAT 59.147 43.478 0.00 0.00 0.00 3.85
2642 3153 3.256704 AGAGAATTGGTTGTAGTGGGGA 58.743 45.455 0.00 0.00 0.00 4.81
2643 3154 3.264450 AGAGAGAATTGGTTGTAGTGGGG 59.736 47.826 0.00 0.00 0.00 4.96
2644 3155 4.559862 AGAGAGAATTGGTTGTAGTGGG 57.440 45.455 0.00 0.00 0.00 4.61
2645 3156 6.037786 TGTAGAGAGAATTGGTTGTAGTGG 57.962 41.667 0.00 0.00 0.00 4.00
2646 3157 6.036517 GCATGTAGAGAGAATTGGTTGTAGTG 59.963 42.308 0.00 0.00 0.00 2.74
2647 3158 6.109359 GCATGTAGAGAGAATTGGTTGTAGT 58.891 40.000 0.00 0.00 0.00 2.73
2648 3159 6.036517 GTGCATGTAGAGAGAATTGGTTGTAG 59.963 42.308 0.00 0.00 0.00 2.74
2649 3160 5.874810 GTGCATGTAGAGAGAATTGGTTGTA 59.125 40.000 0.00 0.00 0.00 2.41
2650 3161 4.697352 GTGCATGTAGAGAGAATTGGTTGT 59.303 41.667 0.00 0.00 0.00 3.32
2651 3162 4.696877 TGTGCATGTAGAGAGAATTGGTTG 59.303 41.667 0.00 0.00 0.00 3.77
2652 3163 4.910195 TGTGCATGTAGAGAGAATTGGTT 58.090 39.130 0.00 0.00 0.00 3.67
2653 3164 4.223700 TCTGTGCATGTAGAGAGAATTGGT 59.776 41.667 6.55 0.00 0.00 3.67
2654 3165 4.763073 TCTGTGCATGTAGAGAGAATTGG 58.237 43.478 6.55 0.00 0.00 3.16
2655 3166 6.018098 GGATTCTGTGCATGTAGAGAGAATTG 60.018 42.308 10.45 0.00 31.80 2.32
2656 3167 6.054295 GGATTCTGTGCATGTAGAGAGAATT 58.946 40.000 10.45 0.00 31.80 2.17
2657 3168 5.129980 TGGATTCTGTGCATGTAGAGAGAAT 59.870 40.000 10.45 10.51 33.81 2.40
2658 3169 4.467438 TGGATTCTGTGCATGTAGAGAGAA 59.533 41.667 10.45 6.54 0.00 2.87
2659 3170 4.026052 TGGATTCTGTGCATGTAGAGAGA 58.974 43.478 10.45 3.63 0.00 3.10
2660 3171 4.118410 GTGGATTCTGTGCATGTAGAGAG 58.882 47.826 10.45 0.00 0.00 3.20
2661 3172 3.515104 TGTGGATTCTGTGCATGTAGAGA 59.485 43.478 6.55 6.55 0.00 3.10
2662 3173 3.865446 TGTGGATTCTGTGCATGTAGAG 58.135 45.455 1.18 1.18 0.00 2.43
2663 3174 3.979101 TGTGGATTCTGTGCATGTAGA 57.021 42.857 0.00 0.00 0.00 2.59
2664 3175 4.193865 TGATGTGGATTCTGTGCATGTAG 58.806 43.478 0.00 0.00 0.00 2.74
2665 3176 4.219264 TGATGTGGATTCTGTGCATGTA 57.781 40.909 0.00 0.00 0.00 2.29
2666 3177 3.076079 TGATGTGGATTCTGTGCATGT 57.924 42.857 0.00 0.00 0.00 3.21
2667 3178 3.630312 TGATGATGTGGATTCTGTGCATG 59.370 43.478 0.00 0.00 0.00 4.06
2668 3179 3.893521 TGATGATGTGGATTCTGTGCAT 58.106 40.909 0.00 0.00 0.00 3.96
2669 3180 3.353370 TGATGATGTGGATTCTGTGCA 57.647 42.857 0.00 0.00 0.00 4.57
2670 3181 3.059120 CGATGATGATGTGGATTCTGTGC 60.059 47.826 0.00 0.00 0.00 4.57
2671 3182 4.210746 GTCGATGATGATGTGGATTCTGTG 59.789 45.833 0.00 0.00 0.00 3.66
2672 3183 4.141869 TGTCGATGATGATGTGGATTCTGT 60.142 41.667 0.00 0.00 0.00 3.41
2673 3184 4.374399 TGTCGATGATGATGTGGATTCTG 58.626 43.478 0.00 0.00 0.00 3.02
2674 3185 4.677673 TGTCGATGATGATGTGGATTCT 57.322 40.909 0.00 0.00 0.00 2.40
2675 3186 4.378149 GCATGTCGATGATGATGTGGATTC 60.378 45.833 10.67 0.00 0.00 2.52
2676 3187 3.501062 GCATGTCGATGATGATGTGGATT 59.499 43.478 10.67 0.00 0.00 3.01
2677 3188 3.072211 GCATGTCGATGATGATGTGGAT 58.928 45.455 10.67 0.00 0.00 3.41
2678 3189 2.158928 TGCATGTCGATGATGATGTGGA 60.159 45.455 10.67 0.00 0.00 4.02
2679 3190 2.215196 TGCATGTCGATGATGATGTGG 58.785 47.619 10.67 0.00 0.00 4.17
2680 3191 3.120304 GGATGCATGTCGATGATGATGTG 60.120 47.826 2.46 0.00 0.00 3.21
2681 3192 3.072211 GGATGCATGTCGATGATGATGT 58.928 45.455 2.46 0.00 0.00 3.06
2682 3193 3.071479 TGGATGCATGTCGATGATGATG 58.929 45.455 2.46 0.66 0.00 3.07
2683 3194 3.412237 TGGATGCATGTCGATGATGAT 57.588 42.857 2.46 3.08 0.00 2.45
2684 3195 2.914695 TGGATGCATGTCGATGATGA 57.085 45.000 2.46 0.00 0.00 2.92
2685 3196 2.418976 GGATGGATGCATGTCGATGATG 59.581 50.000 2.46 0.00 0.00 3.07
2686 3197 2.039348 TGGATGGATGCATGTCGATGAT 59.961 45.455 2.46 0.00 0.00 2.45
2687 3198 1.417145 TGGATGGATGCATGTCGATGA 59.583 47.619 2.46 0.00 0.00 2.92
2688 3199 1.886886 TGGATGGATGCATGTCGATG 58.113 50.000 2.46 0.00 0.00 3.84
2689 3200 2.158711 AGTTGGATGGATGCATGTCGAT 60.159 45.455 2.46 0.00 0.00 3.59
2690 3201 1.210234 AGTTGGATGGATGCATGTCGA 59.790 47.619 2.46 0.00 0.00 4.20
2691 3202 1.600957 GAGTTGGATGGATGCATGTCG 59.399 52.381 2.46 0.00 0.00 4.35
2692 3203 2.617308 CTGAGTTGGATGGATGCATGTC 59.383 50.000 2.46 0.00 0.00 3.06
2693 3204 2.651455 CTGAGTTGGATGGATGCATGT 58.349 47.619 2.46 0.00 0.00 3.21
2694 3205 1.337071 GCTGAGTTGGATGGATGCATG 59.663 52.381 2.46 0.00 0.00 4.06
2695 3206 1.064240 TGCTGAGTTGGATGGATGCAT 60.064 47.619 0.00 0.00 0.00 3.96
2696 3207 0.328926 TGCTGAGTTGGATGGATGCA 59.671 50.000 0.00 0.00 0.00 3.96
2697 3208 1.466856 TTGCTGAGTTGGATGGATGC 58.533 50.000 0.00 0.00 0.00 3.91
2698 3209 3.067742 GGATTTGCTGAGTTGGATGGATG 59.932 47.826 0.00 0.00 0.00 3.51
2699 3210 3.294214 GGATTTGCTGAGTTGGATGGAT 58.706 45.455 0.00 0.00 0.00 3.41
2700 3211 2.726821 GGATTTGCTGAGTTGGATGGA 58.273 47.619 0.00 0.00 0.00 3.41
2701 3212 1.402968 CGGATTTGCTGAGTTGGATGG 59.597 52.381 0.00 0.00 0.00 3.51
2702 3213 1.202222 GCGGATTTGCTGAGTTGGATG 60.202 52.381 0.00 0.00 0.00 3.51
2703 3214 1.098050 GCGGATTTGCTGAGTTGGAT 58.902 50.000 0.00 0.00 0.00 3.41
2704 3215 0.960364 GGCGGATTTGCTGAGTTGGA 60.960 55.000 0.00 0.00 34.52 3.53
2705 3216 1.508088 GGCGGATTTGCTGAGTTGG 59.492 57.895 0.00 0.00 34.52 3.77
2706 3217 1.135315 CGGCGGATTTGCTGAGTTG 59.865 57.895 0.00 0.00 44.17 3.16
2707 3218 2.690778 GCGGCGGATTTGCTGAGTT 61.691 57.895 9.78 0.00 44.17 3.01
2708 3219 3.127533 GCGGCGGATTTGCTGAGT 61.128 61.111 9.78 0.00 44.17 3.41
2709 3220 3.880846 GGCGGCGGATTTGCTGAG 61.881 66.667 9.78 0.00 44.17 3.35
2710 3221 4.408821 AGGCGGCGGATTTGCTGA 62.409 61.111 9.78 0.00 44.17 4.26
2711 3222 3.880846 GAGGCGGCGGATTTGCTG 61.881 66.667 9.78 0.00 44.25 4.41
2712 3223 3.704231 ATGAGGCGGCGGATTTGCT 62.704 57.895 9.78 0.00 34.52 3.91
2713 3224 3.186390 GATGAGGCGGCGGATTTGC 62.186 63.158 9.78 0.00 0.00 3.68
2714 3225 1.375853 TTGATGAGGCGGCGGATTTG 61.376 55.000 9.78 0.00 0.00 2.32
2715 3226 0.679640 TTTGATGAGGCGGCGGATTT 60.680 50.000 9.78 0.00 0.00 2.17
2716 3227 0.679640 TTTTGATGAGGCGGCGGATT 60.680 50.000 9.78 0.00 0.00 3.01
2717 3228 1.077787 TTTTGATGAGGCGGCGGAT 60.078 52.632 9.78 0.00 0.00 4.18
2718 3229 1.745115 CTTTTGATGAGGCGGCGGA 60.745 57.895 9.78 0.00 0.00 5.54
2719 3230 1.305219 TTCTTTTGATGAGGCGGCGG 61.305 55.000 9.78 0.00 0.00 6.13
2720 3231 0.734889 ATTCTTTTGATGAGGCGGCG 59.265 50.000 0.51 0.51 0.00 6.46
2721 3232 2.947448 AATTCTTTTGATGAGGCGGC 57.053 45.000 0.00 0.00 0.00 6.53
2722 3233 4.963276 TGTAATTCTTTTGATGAGGCGG 57.037 40.909 0.00 0.00 0.00 6.13
2723 3234 6.122850 TCATGTAATTCTTTTGATGAGGCG 57.877 37.500 0.00 0.00 0.00 5.52
2724 3235 8.937634 AAATCATGTAATTCTTTTGATGAGGC 57.062 30.769 0.00 0.00 0.00 4.70
2735 3246 9.396022 ACCAGACGATTTAAATCATGTAATTCT 57.604 29.630 24.23 12.04 35.11 2.40
2744 3255 9.004717 TGTGATTAAACCAGACGATTTAAATCA 57.995 29.630 24.23 4.83 34.76 2.57
2745 3256 9.274065 GTGTGATTAAACCAGACGATTTAAATC 57.726 33.333 16.79 16.79 34.76 2.17
2746 3257 8.788806 TGTGTGATTAAACCAGACGATTTAAAT 58.211 29.630 0.00 0.00 34.76 1.40
2747 3258 8.155821 TGTGTGATTAAACCAGACGATTTAAA 57.844 30.769 0.00 0.00 34.76 1.52
2748 3259 7.731882 TGTGTGATTAAACCAGACGATTTAA 57.268 32.000 0.00 0.00 35.38 1.52
2749 3260 7.201487 CGATGTGTGATTAAACCAGACGATTTA 60.201 37.037 0.00 0.00 31.32 1.40
2750 3261 6.402118 CGATGTGTGATTAAACCAGACGATTT 60.402 38.462 0.00 0.00 31.32 2.17
2751 3262 5.063438 CGATGTGTGATTAAACCAGACGATT 59.937 40.000 0.00 0.00 31.32 3.34
2752 3263 4.566759 CGATGTGTGATTAAACCAGACGAT 59.433 41.667 0.00 1.33 31.32 3.73
2753 3264 3.924073 CGATGTGTGATTAAACCAGACGA 59.076 43.478 0.00 0.00 31.32 4.20
2754 3265 3.062099 CCGATGTGTGATTAAACCAGACG 59.938 47.826 0.00 0.00 31.32 4.18
2755 3266 4.000988 ACCGATGTGTGATTAAACCAGAC 58.999 43.478 0.00 2.77 0.00 3.51
2756 3267 4.280436 ACCGATGTGTGATTAAACCAGA 57.720 40.909 0.00 0.00 0.00 3.86
2757 3268 4.142687 GGAACCGATGTGTGATTAAACCAG 60.143 45.833 0.00 0.00 0.00 4.00
2758 3269 3.754323 GGAACCGATGTGTGATTAAACCA 59.246 43.478 0.00 0.00 0.00 3.67
2759 3270 4.007659 AGGAACCGATGTGTGATTAAACC 58.992 43.478 0.00 0.00 0.00 3.27
2760 3271 4.935808 AGAGGAACCGATGTGTGATTAAAC 59.064 41.667 0.00 0.00 0.00 2.01
2761 3272 5.160607 AGAGGAACCGATGTGTGATTAAA 57.839 39.130 0.00 0.00 0.00 1.52
2762 3273 4.819105 AGAGGAACCGATGTGTGATTAA 57.181 40.909 0.00 0.00 0.00 1.40
2763 3274 4.382685 GGAAGAGGAACCGATGTGTGATTA 60.383 45.833 0.00 0.00 0.00 1.75
2764 3275 3.600388 GAAGAGGAACCGATGTGTGATT 58.400 45.455 0.00 0.00 0.00 2.57
2765 3276 2.093447 GGAAGAGGAACCGATGTGTGAT 60.093 50.000 0.00 0.00 0.00 3.06
2766 3277 1.275291 GGAAGAGGAACCGATGTGTGA 59.725 52.381 0.00 0.00 0.00 3.58
2767 3278 1.276421 AGGAAGAGGAACCGATGTGTG 59.724 52.381 0.00 0.00 0.00 3.82
2768 3279 1.550976 GAGGAAGAGGAACCGATGTGT 59.449 52.381 0.00 0.00 0.00 3.72
2769 3280 1.827969 AGAGGAAGAGGAACCGATGTG 59.172 52.381 0.00 0.00 0.00 3.21
2770 3281 2.239681 AGAGGAAGAGGAACCGATGT 57.760 50.000 0.00 0.00 0.00 3.06
2771 3282 2.763448 AGAAGAGGAAGAGGAACCGATG 59.237 50.000 0.00 0.00 0.00 3.84
2772 3283 2.763448 CAGAAGAGGAAGAGGAACCGAT 59.237 50.000 0.00 0.00 0.00 4.18
2773 3284 2.171840 CAGAAGAGGAAGAGGAACCGA 58.828 52.381 0.00 0.00 0.00 4.69
2774 3285 2.171840 TCAGAAGAGGAAGAGGAACCG 58.828 52.381 0.00 0.00 0.00 4.44
2775 3286 4.320023 GTTTCAGAAGAGGAAGAGGAACC 58.680 47.826 0.00 0.00 0.00 3.62
2776 3287 4.320023 GGTTTCAGAAGAGGAAGAGGAAC 58.680 47.826 0.00 0.00 0.00 3.62
2777 3288 3.328050 GGGTTTCAGAAGAGGAAGAGGAA 59.672 47.826 0.00 0.00 0.00 3.36
2778 3289 2.907042 GGGTTTCAGAAGAGGAAGAGGA 59.093 50.000 0.00 0.00 0.00 3.71
2779 3290 2.639839 TGGGTTTCAGAAGAGGAAGAGG 59.360 50.000 0.00 0.00 0.00 3.69
2780 3291 3.669536 GTGGGTTTCAGAAGAGGAAGAG 58.330 50.000 0.00 0.00 0.00 2.85
2781 3292 2.037251 CGTGGGTTTCAGAAGAGGAAGA 59.963 50.000 0.00 0.00 0.00 2.87
2782 3293 2.037251 TCGTGGGTTTCAGAAGAGGAAG 59.963 50.000 0.00 0.00 0.00 3.46
2783 3294 2.037251 CTCGTGGGTTTCAGAAGAGGAA 59.963 50.000 0.00 0.00 0.00 3.36
2784 3295 1.618837 CTCGTGGGTTTCAGAAGAGGA 59.381 52.381 0.00 0.00 0.00 3.71
2785 3296 1.618837 TCTCGTGGGTTTCAGAAGAGG 59.381 52.381 0.00 0.00 0.00 3.69
2786 3297 2.035961 TGTCTCGTGGGTTTCAGAAGAG 59.964 50.000 0.00 0.00 0.00 2.85
2787 3298 2.036387 TGTCTCGTGGGTTTCAGAAGA 58.964 47.619 0.00 0.00 0.00 2.87
2788 3299 2.526304 TGTCTCGTGGGTTTCAGAAG 57.474 50.000 0.00 0.00 0.00 2.85
2789 3300 3.485463 AATGTCTCGTGGGTTTCAGAA 57.515 42.857 0.00 0.00 0.00 3.02
2790 3301 3.485463 AAATGTCTCGTGGGTTTCAGA 57.515 42.857 0.00 0.00 0.00 3.27
2791 3302 4.315803 AGTAAATGTCTCGTGGGTTTCAG 58.684 43.478 0.00 0.00 0.00 3.02
2792 3303 4.039973 AGAGTAAATGTCTCGTGGGTTTCA 59.960 41.667 0.00 0.00 37.07 2.69
2793 3304 4.566987 AGAGTAAATGTCTCGTGGGTTTC 58.433 43.478 0.00 0.00 37.07 2.78
2794 3305 4.618920 AGAGTAAATGTCTCGTGGGTTT 57.381 40.909 0.00 0.00 37.07 3.27
2795 3306 4.283722 AGAAGAGTAAATGTCTCGTGGGTT 59.716 41.667 0.00 0.00 37.07 4.11
2796 3307 3.833070 AGAAGAGTAAATGTCTCGTGGGT 59.167 43.478 0.00 0.00 37.07 4.51
2797 3308 4.082190 TCAGAAGAGTAAATGTCTCGTGGG 60.082 45.833 0.00 0.00 37.07 4.61
2798 3309 5.060662 TCAGAAGAGTAAATGTCTCGTGG 57.939 43.478 0.00 0.00 37.07 4.94
2799 3310 6.128795 GGTTTCAGAAGAGTAAATGTCTCGTG 60.129 42.308 0.00 0.00 37.07 4.35
2800 3311 5.927115 GGTTTCAGAAGAGTAAATGTCTCGT 59.073 40.000 0.00 0.00 37.07 4.18
2801 3312 5.348997 GGGTTTCAGAAGAGTAAATGTCTCG 59.651 44.000 0.00 0.00 37.07 4.04
2802 3313 6.231211 TGGGTTTCAGAAGAGTAAATGTCTC 58.769 40.000 0.00 0.00 0.00 3.36
2803 3314 6.187727 TGGGTTTCAGAAGAGTAAATGTCT 57.812 37.500 0.00 0.00 0.00 3.41
2804 3315 6.655003 TCATGGGTTTCAGAAGAGTAAATGTC 59.345 38.462 0.00 0.00 0.00 3.06
2805 3316 6.542821 TCATGGGTTTCAGAAGAGTAAATGT 58.457 36.000 0.00 0.00 0.00 2.71
2806 3317 6.881065 TCTCATGGGTTTCAGAAGAGTAAATG 59.119 38.462 0.00 0.00 0.00 2.32
2807 3318 6.881602 GTCTCATGGGTTTCAGAAGAGTAAAT 59.118 38.462 0.00 0.00 0.00 1.40
2808 3319 6.183361 TGTCTCATGGGTTTCAGAAGAGTAAA 60.183 38.462 0.00 0.00 0.00 2.01
2809 3320 5.306937 TGTCTCATGGGTTTCAGAAGAGTAA 59.693 40.000 0.00 0.00 0.00 2.24
2810 3321 4.838423 TGTCTCATGGGTTTCAGAAGAGTA 59.162 41.667 0.00 0.00 0.00 2.59
2811 3322 3.648067 TGTCTCATGGGTTTCAGAAGAGT 59.352 43.478 0.00 0.00 0.00 3.24
2812 3323 4.277515 TGTCTCATGGGTTTCAGAAGAG 57.722 45.455 0.00 0.00 0.00 2.85
2813 3324 4.916041 ATGTCTCATGGGTTTCAGAAGA 57.084 40.909 0.00 0.00 0.00 2.87
2814 3325 5.251764 AGAATGTCTCATGGGTTTCAGAAG 58.748 41.667 0.00 0.00 0.00 2.85
2815 3326 5.246981 AGAATGTCTCATGGGTTTCAGAA 57.753 39.130 0.00 0.00 0.00 3.02
2816 3327 4.323792 GGAGAATGTCTCATGGGTTTCAGA 60.324 45.833 7.52 0.00 45.12 3.27
2817 3328 3.944015 GGAGAATGTCTCATGGGTTTCAG 59.056 47.826 7.52 0.00 45.12 3.02
2818 3329 3.588842 AGGAGAATGTCTCATGGGTTTCA 59.411 43.478 7.52 0.00 45.12 2.69
2819 3330 4.080638 AGAGGAGAATGTCTCATGGGTTTC 60.081 45.833 7.52 0.00 45.12 2.78
2820 3331 3.848975 AGAGGAGAATGTCTCATGGGTTT 59.151 43.478 7.52 0.00 45.12 3.27
2821 3332 3.458831 AGAGGAGAATGTCTCATGGGTT 58.541 45.455 7.52 0.00 45.12 4.11
2822 3333 3.127791 AGAGGAGAATGTCTCATGGGT 57.872 47.619 7.52 0.00 45.12 4.51
2823 3334 4.500499 AAAGAGGAGAATGTCTCATGGG 57.500 45.455 7.52 0.00 45.12 4.00
2824 3335 7.659390 GGTATTAAAGAGGAGAATGTCTCATGG 59.341 40.741 7.52 0.00 45.12 3.66
2825 3336 7.659390 GGGTATTAAAGAGGAGAATGTCTCATG 59.341 40.741 7.52 0.00 45.12 3.07
2826 3337 7.472100 CGGGTATTAAAGAGGAGAATGTCTCAT 60.472 40.741 7.52 0.00 45.12 2.90
2827 3338 6.183360 CGGGTATTAAAGAGGAGAATGTCTCA 60.183 42.308 7.52 0.00 45.12 3.27
2828 3339 6.040616 TCGGGTATTAAAGAGGAGAATGTCTC 59.959 42.308 0.00 0.00 42.66 3.36
2829 3340 5.897824 TCGGGTATTAAAGAGGAGAATGTCT 59.102 40.000 0.00 0.00 0.00 3.41
2830 3341 6.040616 TCTCGGGTATTAAAGAGGAGAATGTC 59.959 42.308 0.00 0.00 0.00 3.06
2831 3342 5.897824 TCTCGGGTATTAAAGAGGAGAATGT 59.102 40.000 0.00 0.00 0.00 2.71
2832 3343 6.217294 GTCTCGGGTATTAAAGAGGAGAATG 58.783 44.000 0.00 0.00 31.59 2.67
2833 3344 5.009811 CGTCTCGGGTATTAAAGAGGAGAAT 59.990 44.000 0.00 0.00 31.59 2.40
2834 3345 4.337555 CGTCTCGGGTATTAAAGAGGAGAA 59.662 45.833 0.00 0.00 31.59 2.87
2835 3346 3.881688 CGTCTCGGGTATTAAAGAGGAGA 59.118 47.826 0.00 0.00 0.00 3.71
2836 3347 3.881688 TCGTCTCGGGTATTAAAGAGGAG 59.118 47.826 0.00 0.00 31.25 3.69
2837 3348 3.889815 TCGTCTCGGGTATTAAAGAGGA 58.110 45.455 0.00 0.00 32.10 3.71
2838 3349 4.644103 TTCGTCTCGGGTATTAAAGAGG 57.356 45.455 0.00 0.00 0.00 3.69
2839 3350 6.040878 ACAATTCGTCTCGGGTATTAAAGAG 58.959 40.000 0.00 0.00 0.00 2.85
2840 3351 5.969423 ACAATTCGTCTCGGGTATTAAAGA 58.031 37.500 0.00 0.00 0.00 2.52
2841 3352 6.270096 GACAATTCGTCTCGGGTATTAAAG 57.730 41.667 0.00 0.00 41.81 1.85
2854 3365 3.914312 TGAGGACAAGAGACAATTCGTC 58.086 45.455 1.22 1.22 45.77 4.20
2855 3366 3.322254 ACTGAGGACAAGAGACAATTCGT 59.678 43.478 0.00 0.00 0.00 3.85
2856 3367 3.919216 ACTGAGGACAAGAGACAATTCG 58.081 45.455 0.00 0.00 0.00 3.34
2857 3368 4.249661 GGACTGAGGACAAGAGACAATTC 58.750 47.826 0.00 0.00 0.00 2.17
2858 3369 3.008485 GGGACTGAGGACAAGAGACAATT 59.992 47.826 0.00 0.00 0.00 2.32
2859 3370 2.569404 GGGACTGAGGACAAGAGACAAT 59.431 50.000 0.00 0.00 0.00 2.71
2860 3371 1.971357 GGGACTGAGGACAAGAGACAA 59.029 52.381 0.00 0.00 0.00 3.18
2861 3372 1.633774 GGGACTGAGGACAAGAGACA 58.366 55.000 0.00 0.00 0.00 3.41
2862 3373 0.899019 GGGGACTGAGGACAAGAGAC 59.101 60.000 0.00 0.00 0.00 3.36
2863 3374 0.252284 GGGGGACTGAGGACAAGAGA 60.252 60.000 0.00 0.00 0.00 3.10
2864 3375 0.545309 TGGGGGACTGAGGACAAGAG 60.545 60.000 0.00 0.00 0.00 2.85
2865 3376 0.119155 ATGGGGGACTGAGGACAAGA 59.881 55.000 0.00 0.00 0.00 3.02
2866 3377 0.995024 AATGGGGGACTGAGGACAAG 59.005 55.000 0.00 0.00 0.00 3.16
2867 3378 0.698238 CAATGGGGGACTGAGGACAA 59.302 55.000 0.00 0.00 0.00 3.18
2868 3379 0.475632 ACAATGGGGGACTGAGGACA 60.476 55.000 0.00 0.00 0.00 4.02
2869 3380 1.486726 CTACAATGGGGGACTGAGGAC 59.513 57.143 0.00 0.00 0.00 3.85
2870 3381 1.625228 CCTACAATGGGGGACTGAGGA 60.625 57.143 0.00 0.00 0.00 3.71
2871 3382 0.839946 CCTACAATGGGGGACTGAGG 59.160 60.000 0.00 0.00 0.00 3.86
2872 3383 1.765314 CTCCTACAATGGGGGACTGAG 59.235 57.143 0.00 0.00 0.00 3.35
2873 3384 1.080498 ACTCCTACAATGGGGGACTGA 59.920 52.381 0.00 0.00 0.00 3.41
2874 3385 1.584724 ACTCCTACAATGGGGGACTG 58.415 55.000 0.00 0.00 0.00 3.51
2875 3386 2.361085 AACTCCTACAATGGGGGACT 57.639 50.000 0.00 0.00 0.00 3.85
2876 3387 3.381335 TCTAACTCCTACAATGGGGGAC 58.619 50.000 0.00 0.00 0.00 4.46
2877 3388 3.632645 CCTCTAACTCCTACAATGGGGGA 60.633 52.174 0.00 0.00 0.00 4.81
2878 3389 2.706190 CCTCTAACTCCTACAATGGGGG 59.294 54.545 0.00 0.00 0.00 5.40
2879 3390 2.104963 GCCTCTAACTCCTACAATGGGG 59.895 54.545 0.00 0.00 0.00 4.96
2880 3391 2.771943 TGCCTCTAACTCCTACAATGGG 59.228 50.000 0.00 0.00 0.00 4.00
2881 3392 4.696479 ATGCCTCTAACTCCTACAATGG 57.304 45.455 0.00 0.00 0.00 3.16
2882 3393 7.173907 CCAATAATGCCTCTAACTCCTACAATG 59.826 40.741 0.00 0.00 0.00 2.82
2883 3394 7.072454 TCCAATAATGCCTCTAACTCCTACAAT 59.928 37.037 0.00 0.00 0.00 2.71
2918 3429 8.264347 TGCATTATTGTGGATGTAAAGAGACTA 58.736 33.333 0.00 0.00 0.00 2.59
2958 3470 5.182570 TGATTTCAAGTCCTTCTGAGCAATG 59.817 40.000 0.00 0.00 0.00 2.82
3204 3801 9.093970 TCTAATTTACACGTTTCATTCGATGAT 57.906 29.630 0.00 0.00 39.39 2.45
3247 3848 6.908870 ACAATCCAACTTTTTCTCTTTTGC 57.091 33.333 0.00 0.00 0.00 3.68
3399 4007 6.545666 CCTACCATACCAAAAAGTCATGCATA 59.454 38.462 0.00 0.00 0.00 3.14
3411 4019 3.371487 CCATGCAGTCCTACCATACCAAA 60.371 47.826 0.00 0.00 0.00 3.28
3412 4020 2.172505 CCATGCAGTCCTACCATACCAA 59.827 50.000 0.00 0.00 0.00 3.67
3470 4083 3.253921 TCAACAAGTCATGCATGTTCCTG 59.746 43.478 25.43 19.62 36.95 3.86
3540 4156 2.921754 GCCACGTCAACTAGTCATACAC 59.078 50.000 0.00 0.00 0.00 2.90
3550 4169 1.968017 CAGCCATGCCACGTCAACT 60.968 57.895 0.00 0.00 0.00 3.16
3738 4500 1.737793 GAATCTTGGGTGGCGTACAAG 59.262 52.381 8.11 8.11 42.14 3.16
3775 4540 7.756395 TTCATTCTCAAGAAGAGCAGAAAAT 57.244 32.000 0.00 0.00 44.35 1.82
3788 4562 9.611284 TCGTGAACAATAAATTTCATTCTCAAG 57.389 29.630 0.00 0.00 34.34 3.02
3792 4566 9.912634 ACATTCGTGAACAATAAATTTCATTCT 57.087 25.926 0.00 0.00 34.34 2.40
3794 4568 9.689976 TGACATTCGTGAACAATAAATTTCATT 57.310 25.926 0.00 0.00 34.34 2.57
3927 4701 0.458889 TTGTATACGTGGTGCTCCGC 60.459 55.000 8.33 8.33 40.52 5.54
3932 4706 1.396996 CAAGGCTTGTATACGTGGTGC 59.603 52.381 19.07 0.00 0.00 5.01
3978 6220 0.813184 CATTGGAGGACCATGTGCAC 59.187 55.000 10.75 10.75 46.34 4.57
4006 6248 6.496911 TCTTATCATCATAATCGGGGAAGTGA 59.503 38.462 0.00 0.00 0.00 3.41
4048 6317 7.415541 CCATTCGGATTGTAATTCTGAATGTGT 60.416 37.037 23.43 0.00 35.52 3.72
4358 6647 3.880490 TGACTTAAGTGCGTGGTGAAAAT 59.120 39.130 14.14 0.00 0.00 1.82
4436 7418 3.189495 GTCTTTGCTACTTTGAGGCTTCC 59.811 47.826 0.00 0.00 0.00 3.46
4695 7677 4.954875 AGCTGTAGATTGCATAACCTCTC 58.045 43.478 0.00 0.00 0.00 3.20
4696 7678 5.600484 AGTAGCTGTAGATTGCATAACCTCT 59.400 40.000 0.00 0.00 0.00 3.69
4747 7729 4.999950 GTGATCCAAATATTGATCTCGGCT 59.000 41.667 13.86 0.00 0.00 5.52
4796 7778 6.043474 AGGTATGCCCCTTTGTAATATACGAA 59.957 38.462 0.00 0.00 34.57 3.85
4820 7802 4.517952 TGCAACACACAAATATTCCCAG 57.482 40.909 0.00 0.00 0.00 4.45
4825 7807 8.924691 GTTCATAACATGCAACACACAAATATT 58.075 29.630 0.00 0.00 0.00 1.28
4831 7813 4.605968 GTGTTCATAACATGCAACACACA 58.394 39.130 18.83 2.19 44.35 3.72
4833 7815 3.882982 CGTGTTCATAACATGCAACACA 58.117 40.909 21.06 3.60 43.44 3.72
4854 7836 1.084370 ACGAGTGGCGCTTTCTATGC 61.084 55.000 7.64 0.00 46.04 3.14
4868 7850 6.867293 GGTTGATTCAGTAAACTTCTACGAGT 59.133 38.462 0.00 0.00 0.00 4.18
4869 7851 6.310711 GGGTTGATTCAGTAAACTTCTACGAG 59.689 42.308 0.00 0.00 0.00 4.18
4871 7853 6.164176 AGGGTTGATTCAGTAAACTTCTACG 58.836 40.000 0.00 0.00 0.00 3.51
4874 7856 6.441088 AGAGGGTTGATTCAGTAAACTTCT 57.559 37.500 0.00 0.00 0.00 2.85
4884 7866 2.099141 CGCTCAAGAGGGTTGATTCA 57.901 50.000 6.02 0.00 36.72 2.57
4892 7874 0.250295 TTCCAACACGCTCAAGAGGG 60.250 55.000 12.00 12.00 45.63 4.30
4893 7875 0.868406 GTTCCAACACGCTCAAGAGG 59.132 55.000 0.00 0.00 0.00 3.69
4894 7876 1.871080 AGTTCCAACACGCTCAAGAG 58.129 50.000 0.00 0.00 0.00 2.85
4895 7877 2.325583 AAGTTCCAACACGCTCAAGA 57.674 45.000 0.00 0.00 0.00 3.02
4896 7878 2.287009 GGAAAGTTCCAACACGCTCAAG 60.287 50.000 5.16 0.00 46.76 3.02
4897 7879 1.673920 GGAAAGTTCCAACACGCTCAA 59.326 47.619 5.16 0.00 46.76 3.02
4898 7880 1.305201 GGAAAGTTCCAACACGCTCA 58.695 50.000 5.16 0.00 46.76 4.26
4916 7898 0.320683 TGATCACACTTGGCTGACGG 60.321 55.000 0.00 0.00 0.00 4.79
4918 7900 2.703416 TCATGATCACACTTGGCTGAC 58.297 47.619 0.00 0.00 0.00 3.51
4923 7905 2.223502 GCAGCATCATGATCACACTTGG 60.224 50.000 4.86 0.00 0.00 3.61
4927 7909 1.333931 CAGGCAGCATCATGATCACAC 59.666 52.381 4.86 0.00 0.00 3.82
4946 7928 4.227300 AGGAATTCATAGCCTGTACAACCA 59.773 41.667 7.93 0.00 0.00 3.67
4977 7959 1.601903 GTTGGAAGTCATGTGTCGCAA 59.398 47.619 0.00 0.00 0.00 4.85
4983 7965 4.790766 GCAAGTCTTGTTGGAAGTCATGTG 60.791 45.833 14.03 0.00 0.00 3.21
5007 7989 1.989706 TTTGTTTAGCCTGGTGGACC 58.010 50.000 0.00 0.00 34.57 4.46
5025 8007 6.151663 TGCTTGCATGCATGACTATTATTT 57.848 33.333 31.38 0.00 38.12 1.40
5036 8018 4.394439 TGTCATATTTGCTTGCATGCAT 57.606 36.364 25.81 15.57 42.96 3.96
5039 8021 6.146510 ACAACTTTGTCATATTTGCTTGCATG 59.853 34.615 0.00 0.00 36.50 4.06
5040 8022 6.225318 ACAACTTTGTCATATTTGCTTGCAT 58.775 32.000 0.00 0.00 36.50 3.96
5068 8050 2.634940 TGGAACCCTTGTCTCAGAGAAG 59.365 50.000 4.50 4.50 33.51 2.85
5070 8052 2.398754 TGGAACCCTTGTCTCAGAGA 57.601 50.000 0.00 0.00 0.00 3.10
5082 8064 5.804639 TGAGTATGCACATATATGGAACCC 58.195 41.667 16.96 0.90 0.00 4.11
5098 8080 7.866898 CAGGTCAGTCAATCTCTTATGAGTATG 59.133 40.741 5.60 6.37 40.98 2.39
5113 8095 1.208706 TGGTGTTCCAGGTCAGTCAA 58.791 50.000 0.00 0.00 39.03 3.18
5178 8160 1.544724 GTTGCTTCAATGCACCCCTA 58.455 50.000 0.00 0.00 43.20 3.53
5181 8163 1.187567 AGGGTTGCTTCAATGCACCC 61.188 55.000 14.66 14.66 45.72 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.