Multiple sequence alignment - TraesCS1B01G007400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G007400 chr1B 100.000 5567 0 0 1 5567 4149758 4155324 0.000000e+00 10281.0
1 TraesCS1B01G007400 chr1B 90.505 3012 278 4 1039 4050 4591603 4588600 0.000000e+00 3971.0
2 TraesCS1B01G007400 chr1B 88.105 3018 342 15 1044 4052 4483642 4480633 0.000000e+00 3568.0
3 TraesCS1B01G007400 chr1B 88.054 3022 344 13 1039 4055 4114561 4117570 0.000000e+00 3565.0
4 TraesCS1B01G007400 chr1B 87.442 3034 353 23 1044 4063 3951180 3954199 0.000000e+00 3467.0
5 TraesCS1B01G007400 chr1B 87.376 3026 374 7 1039 4061 4510812 4507792 0.000000e+00 3465.0
6 TraesCS1B01G007400 chr1B 86.738 3084 388 18 975 4046 3964514 3967588 0.000000e+00 3410.0
7 TraesCS1B01G007400 chr1B 85.997 3185 425 17 884 4057 3942244 3945418 0.000000e+00 3391.0
8 TraesCS1B01G007400 chr1B 87.559 1262 133 16 730 1974 4561865 4560611 0.000000e+00 1439.0
9 TraesCS1B01G007400 chr1B 85.391 883 90 16 4147 5000 4529591 4528719 0.000000e+00 880.0
10 TraesCS1B01G007400 chr1B 84.943 870 98 16 4159 5000 4098641 4099505 0.000000e+00 850.0
11 TraesCS1B01G007400 chr1B 82.531 893 122 20 4174 5055 3997505 3998374 0.000000e+00 754.0
12 TraesCS1B01G007400 chr1B 83.077 845 86 27 4159 4969 4821521 4820700 0.000000e+00 715.0
13 TraesCS1B01G007400 chr1B 82.217 866 102 18 4159 5000 4841632 4840795 0.000000e+00 699.0
14 TraesCS1B01G007400 chr1B 82.449 735 93 19 4148 4859 3967599 3968320 1.330000e-170 610.0
15 TraesCS1B01G007400 chr1B 88.532 436 41 3 4174 4604 3945447 3945878 2.300000e-143 520.0
16 TraesCS1B01G007400 chr1B 86.947 452 37 7 219 657 4934603 4934161 6.480000e-134 488.0
17 TraesCS1B01G007400 chr1B 85.744 477 40 6 200 657 4538017 4537550 3.900000e-131 479.0
18 TraesCS1B01G007400 chr1B 82.857 455 53 12 205 655 3940130 3940563 8.750000e-103 385.0
19 TraesCS1B01G007400 chr1B 85.106 329 42 6 4646 4969 4862072 4861746 4.160000e-86 329.0
20 TraesCS1B01G007400 chr1B 89.308 159 10 3 499 657 4513418 4513267 5.690000e-45 193.0
21 TraesCS1B01G007400 chr1B 86.441 59 6 2 205 262 3941357 3941414 4.660000e-06 63.9
22 TraesCS1B01G007400 chr1B 93.182 44 1 1 533 576 4512723 4512682 4.660000e-06 63.9
23 TraesCS1B01G007400 chr1B 97.143 35 1 0 1 35 3940088 3940122 6.020000e-05 60.2
24 TraesCS1B01G007400 chr1B 97.143 35 1 0 1 35 4513711 4513677 6.020000e-05 60.2
25 TraesCS1B01G007400 chr1B 97.143 35 1 0 1 35 4948596 4948562 6.020000e-05 60.2
26 TraesCS1B01G007400 chr3D 88.522 3032 337 9 1039 4066 560058089 560055065 0.000000e+00 3661.0
27 TraesCS1B01G007400 chr3D 89.341 1426 137 10 4147 5567 560055067 560053652 0.000000e+00 1777.0
28 TraesCS1B01G007400 chr3D 95.429 175 7 1 28 201 185002780 185002606 1.530000e-70 278.0
29 TraesCS1B01G007400 chr3D 86.364 110 14 1 4042 4151 26880578 26880470 9.800000e-23 119.0
30 TraesCS1B01G007400 chr3D 86.486 111 12 3 4042 4151 156838772 156838664 9.800000e-23 119.0
31 TraesCS1B01G007400 chr1D 86.490 3353 416 25 739 4066 621433 618093 0.000000e+00 3648.0
32 TraesCS1B01G007400 chr1D 85.121 867 102 13 4158 5000 462237 463100 0.000000e+00 861.0
33 TraesCS1B01G007400 chr1D 89.573 422 42 2 4159 4579 494549950 494550370 8.210000e-148 534.0
34 TraesCS1B01G007400 chr1D 87.312 465 38 5 205 657 389581 390036 3.850000e-141 512.0
35 TraesCS1B01G007400 chr1D 85.132 491 63 7 4159 4646 650626 651109 1.390000e-135 494.0
36 TraesCS1B01G007400 chr1D 85.411 377 41 3 200 563 643285 643660 4.070000e-101 379.0
37 TraesCS1B01G007400 chr1D 83.212 274 35 8 4798 5065 395801 396069 2.000000e-59 241.0
38 TraesCS1B01G007400 chr1D 93.182 88 6 0 4064 4151 111518864 111518777 4.530000e-26 130.0
39 TraesCS1B01G007400 chr1D 86.486 111 12 3 4042 4151 398337778 398337886 9.800000e-23 119.0
40 TraesCS1B01G007400 chr1A 86.788 1264 142 17 730 1974 2982345 2983602 0.000000e+00 1386.0
41 TraesCS1B01G007400 chr1A 82.850 414 67 4 4646 5057 27215659 27216070 8.810000e-98 368.0
42 TraesCS1B01G007400 chr1A 80.240 167 21 6 5091 5252 3698706 3698547 1.270000e-21 115.0
43 TraesCS1B01G007400 chr6A 97.059 170 5 0 31 200 153669881 153669712 2.540000e-73 287.0
44 TraesCS1B01G007400 chr6D 96.532 173 5 1 32 203 392897144 392896972 9.130000e-73 285.0
45 TraesCS1B01G007400 chr3B 97.041 169 5 0 34 202 120617079 120616911 9.130000e-73 285.0
46 TraesCS1B01G007400 chr2D 97.590 166 4 0 35 200 196347493 196347328 9.130000e-73 285.0
47 TraesCS1B01G007400 chr5D 96.000 175 6 1 35 208 455740300 455740474 3.280000e-72 283.0
48 TraesCS1B01G007400 chr4D 96.000 175 6 1 35 208 293244353 293244527 3.280000e-72 283.0
49 TraesCS1B01G007400 chr4A 94.475 181 9 1 21 201 521301866 521302045 1.530000e-70 278.0
50 TraesCS1B01G007400 chr7D 93.514 185 12 0 34 218 149093791 149093607 5.490000e-70 276.0
51 TraesCS1B01G007400 chr2A 92.473 93 6 1 4056 4148 3793016 3793107 1.260000e-26 132.0
52 TraesCS1B01G007400 chr4B 93.182 88 6 0 4064 4151 423050996 423051083 4.530000e-26 130.0
53 TraesCS1B01G007400 chrUn 87.611 113 11 3 4040 4151 154694852 154694962 1.630000e-25 128.0
54 TraesCS1B01G007400 chr6B 91.398 93 6 2 4064 4155 48874039 48874130 5.850000e-25 126.0
55 TraesCS1B01G007400 chr2B 88.350 103 8 3 4064 4166 354879209 354879111 2.720000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G007400 chr1B 4149758 4155324 5566 False 10281.000 10281 100.00000 1 5567 1 chr1B.!!$F5 5566
1 TraesCS1B01G007400 chr1B 4588600 4591603 3003 True 3971.000 3971 90.50500 1039 4050 1 chr1B.!!$R5 3011
2 TraesCS1B01G007400 chr1B 4480633 4483642 3009 True 3568.000 3568 88.10500 1044 4052 1 chr1B.!!$R1 3008
3 TraesCS1B01G007400 chr1B 4114561 4117570 3009 False 3565.000 3565 88.05400 1039 4055 1 chr1B.!!$F4 3016
4 TraesCS1B01G007400 chr1B 3951180 3954199 3019 False 3467.000 3467 87.44200 1044 4063 1 chr1B.!!$F1 3019
5 TraesCS1B01G007400 chr1B 3964514 3968320 3806 False 2010.000 3410 84.59350 975 4859 2 chr1B.!!$F7 3884
6 TraesCS1B01G007400 chr1B 4560611 4561865 1254 True 1439.000 1439 87.55900 730 1974 1 chr1B.!!$R4 1244
7 TraesCS1B01G007400 chr1B 4507792 4513711 5919 True 945.525 3465 91.75225 1 4061 4 chr1B.!!$R11 4060
8 TraesCS1B01G007400 chr1B 3940088 3945878 5790 False 884.020 3391 88.19400 1 4604 5 chr1B.!!$F6 4603
9 TraesCS1B01G007400 chr1B 4528719 4529591 872 True 880.000 880 85.39100 4147 5000 1 chr1B.!!$R2 853
10 TraesCS1B01G007400 chr1B 4098641 4099505 864 False 850.000 850 84.94300 4159 5000 1 chr1B.!!$F3 841
11 TraesCS1B01G007400 chr1B 3997505 3998374 869 False 754.000 754 82.53100 4174 5055 1 chr1B.!!$F2 881
12 TraesCS1B01G007400 chr1B 4820700 4821521 821 True 715.000 715 83.07700 4159 4969 1 chr1B.!!$R6 810
13 TraesCS1B01G007400 chr1B 4840795 4841632 837 True 699.000 699 82.21700 4159 5000 1 chr1B.!!$R7 841
14 TraesCS1B01G007400 chr3D 560053652 560058089 4437 True 2719.000 3661 88.93150 1039 5567 2 chr3D.!!$R4 4528
15 TraesCS1B01G007400 chr1D 618093 621433 3340 True 3648.000 3648 86.49000 739 4066 1 chr1D.!!$R1 3327
16 TraesCS1B01G007400 chr1D 462237 463100 863 False 861.000 861 85.12100 4158 5000 1 chr1D.!!$F3 842
17 TraesCS1B01G007400 chr1A 2982345 2983602 1257 False 1386.000 1386 86.78800 730 1974 1 chr1A.!!$F1 1244

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 696 0.037605 AGGTAAGGACAAGTTCGCCG 60.038 55.000 0.00 0.00 0.00 6.46 F
677 701 0.038526 AGGACAAGTTCGCCGTAGTG 60.039 55.000 0.00 0.00 0.00 2.74 F
699 723 0.248866 GAGAACGCAGCTAGCTCCTC 60.249 60.000 16.15 12.18 42.61 3.71 F
2535 4770 0.178990 ACCTTGGCAGGAACCAACTC 60.179 55.000 9.53 0.00 44.80 3.01 F
2624 4859 1.000359 TCTCGGGGCAGATCTCACA 60.000 57.895 0.00 0.00 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2522 4757 0.108585 TCCTGTGAGTTGGTTCCTGC 59.891 55.000 0.00 0.0 0.00 4.85 R
2523 4758 1.694150 TCTCCTGTGAGTTGGTTCCTG 59.306 52.381 0.00 0.0 39.75 3.86 R
2588 4823 4.273724 CCGAGAGTCTATTCGATGACAAGA 59.726 45.833 13.57 0.0 39.06 3.02 R
3570 5806 1.071471 CCCGTCTTGGAGTTGTGCT 59.929 57.895 0.00 0.0 42.00 4.40 R
4592 6859 1.063492 TCCGCTACAATAGACCCTGGA 60.063 52.381 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.481340 TGCACTCATTTGATTACTCATATACTC 57.519 33.333 0.00 0.00 0.00 2.59
40 41 8.930760 GCACTCATTTGATTACTCATATACTCC 58.069 37.037 0.00 0.00 0.00 3.85
41 42 9.429359 CACTCATTTGATTACTCATATACTCCC 57.571 37.037 0.00 0.00 0.00 4.30
42 43 9.386122 ACTCATTTGATTACTCATATACTCCCT 57.614 33.333 0.00 0.00 0.00 4.20
48 49 9.832445 TTGATTACTCATATACTCCCTTTGTTC 57.168 33.333 0.00 0.00 0.00 3.18
49 50 8.429641 TGATTACTCATATACTCCCTTTGTTCC 58.570 37.037 0.00 0.00 0.00 3.62
50 51 7.989947 TTACTCATATACTCCCTTTGTTCCT 57.010 36.000 0.00 0.00 0.00 3.36
51 52 9.670442 ATTACTCATATACTCCCTTTGTTCCTA 57.330 33.333 0.00 0.00 0.00 2.94
52 53 7.989947 ACTCATATACTCCCTTTGTTCCTAA 57.010 36.000 0.00 0.00 0.00 2.69
53 54 8.388656 ACTCATATACTCCCTTTGTTCCTAAA 57.611 34.615 0.00 0.00 0.00 1.85
54 55 9.004231 ACTCATATACTCCCTTTGTTCCTAAAT 57.996 33.333 0.00 0.00 0.00 1.40
60 61 9.990868 ATACTCCCTTTGTTCCTAAATATTTGT 57.009 29.630 11.05 0.00 0.00 2.83
61 62 8.349568 ACTCCCTTTGTTCCTAAATATTTGTC 57.650 34.615 11.05 0.00 0.00 3.18
62 63 8.170730 ACTCCCTTTGTTCCTAAATATTTGTCT 58.829 33.333 11.05 0.00 0.00 3.41
63 64 8.950007 TCCCTTTGTTCCTAAATATTTGTCTT 57.050 30.769 11.05 0.00 0.00 3.01
64 65 9.374711 TCCCTTTGTTCCTAAATATTTGTCTTT 57.625 29.630 11.05 0.00 0.00 2.52
65 66 9.996554 CCCTTTGTTCCTAAATATTTGTCTTTT 57.003 29.630 11.05 0.00 0.00 2.27
83 84 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
84 85 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
99 100 1.411246 TGGACTACCACATACGGATGC 59.589 52.381 7.78 0.00 41.77 3.91
100 101 1.411246 GGACTACCACATACGGATGCA 59.589 52.381 7.78 0.00 36.43 3.96
101 102 2.037251 GGACTACCACATACGGATGCAT 59.963 50.000 7.78 0.00 36.43 3.96
102 103 3.257375 GGACTACCACATACGGATGCATA 59.743 47.826 7.78 0.00 36.43 3.14
103 104 4.081642 GGACTACCACATACGGATGCATAT 60.082 45.833 7.78 0.00 36.43 1.78
104 105 5.126545 GGACTACCACATACGGATGCATATA 59.873 44.000 7.78 0.00 36.43 0.86
105 106 6.208988 ACTACCACATACGGATGCATATAG 57.791 41.667 7.78 7.33 36.43 1.31
106 107 5.949952 ACTACCACATACGGATGCATATAGA 59.050 40.000 7.78 0.00 36.43 1.98
107 108 5.073311 ACCACATACGGATGCATATAGAC 57.927 43.478 7.78 0.00 36.43 2.59
108 109 4.526650 ACCACATACGGATGCATATAGACA 59.473 41.667 7.78 0.00 36.43 3.41
109 110 5.187772 ACCACATACGGATGCATATAGACAT 59.812 40.000 7.78 0.00 36.43 3.06
110 111 6.379988 ACCACATACGGATGCATATAGACATA 59.620 38.462 7.78 0.00 36.43 2.29
111 112 7.069950 ACCACATACGGATGCATATAGACATAT 59.930 37.037 7.78 0.00 36.43 1.78
112 113 7.928167 CCACATACGGATGCATATAGACATATT 59.072 37.037 7.78 0.00 36.43 1.28
113 114 9.317936 CACATACGGATGCATATAGACATATTT 57.682 33.333 7.78 0.00 36.43 1.40
114 115 9.890629 ACATACGGATGCATATAGACATATTTT 57.109 29.630 7.78 0.00 36.43 1.82
118 119 9.809096 ACGGATGCATATAGACATATTTTAGAG 57.191 33.333 0.00 0.00 0.00 2.43
119 120 9.809096 CGGATGCATATAGACATATTTTAGAGT 57.191 33.333 0.00 0.00 0.00 3.24
139 140 4.718961 AGTGTAGGTTCACTCATTTTGCT 58.281 39.130 0.00 0.00 44.07 3.91
140 141 4.757149 AGTGTAGGTTCACTCATTTTGCTC 59.243 41.667 0.00 0.00 44.07 4.26
141 142 4.072131 TGTAGGTTCACTCATTTTGCTCC 58.928 43.478 0.00 0.00 0.00 4.70
142 143 2.154462 AGGTTCACTCATTTTGCTCCG 58.846 47.619 0.00 0.00 0.00 4.63
143 144 1.880027 GGTTCACTCATTTTGCTCCGT 59.120 47.619 0.00 0.00 0.00 4.69
144 145 3.071479 GGTTCACTCATTTTGCTCCGTA 58.929 45.455 0.00 0.00 0.00 4.02
145 146 3.689649 GGTTCACTCATTTTGCTCCGTAT 59.310 43.478 0.00 0.00 0.00 3.06
146 147 4.437390 GGTTCACTCATTTTGCTCCGTATG 60.437 45.833 0.00 0.00 0.00 2.39
147 148 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
148 149 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
149 150 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
150 151 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
151 152 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
152 153 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
153 154 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
154 155 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
155 156 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
156 157 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
157 158 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
158 159 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
159 160 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
160 161 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
161 162 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
162 163 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
163 164 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
164 165 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
165 166 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
166 167 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
167 168 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
168 169 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
169 170 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
170 171 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
171 172 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
172 173 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
173 174 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
174 175 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
175 176 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
176 177 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
177 178 8.494347 CACTTGTTGAAATCTCTAGAAAGACAG 58.506 37.037 0.00 0.00 0.00 3.51
178 179 8.424918 ACTTGTTGAAATCTCTAGAAAGACAGA 58.575 33.333 0.00 0.00 0.00 3.41
179 180 9.434420 CTTGTTGAAATCTCTAGAAAGACAGAT 57.566 33.333 0.00 0.00 0.00 2.90
190 191 9.672086 CTCTAGAAAGACAGATATTTAGGAACG 57.328 37.037 0.00 0.00 0.00 3.95
191 192 8.630917 TCTAGAAAGACAGATATTTAGGAACGG 58.369 37.037 0.00 0.00 0.00 4.44
192 193 7.419711 AGAAAGACAGATATTTAGGAACGGA 57.580 36.000 0.00 0.00 0.00 4.69
193 194 7.493367 AGAAAGACAGATATTTAGGAACGGAG 58.507 38.462 0.00 0.00 0.00 4.63
194 195 5.793030 AGACAGATATTTAGGAACGGAGG 57.207 43.478 0.00 0.00 0.00 4.30
195 196 4.589374 AGACAGATATTTAGGAACGGAGGG 59.411 45.833 0.00 0.00 0.00 4.30
196 197 4.553678 ACAGATATTTAGGAACGGAGGGA 58.446 43.478 0.00 0.00 0.00 4.20
197 198 4.589374 ACAGATATTTAGGAACGGAGGGAG 59.411 45.833 0.00 0.00 0.00 4.30
198 199 4.589374 CAGATATTTAGGAACGGAGGGAGT 59.411 45.833 0.00 0.00 0.00 3.85
199 200 5.773680 CAGATATTTAGGAACGGAGGGAGTA 59.226 44.000 0.00 0.00 0.00 2.59
200 201 6.437793 CAGATATTTAGGAACGGAGGGAGTAT 59.562 42.308 0.00 0.00 0.00 2.12
201 202 7.017531 AGATATTTAGGAACGGAGGGAGTATT 58.982 38.462 0.00 0.00 0.00 1.89
202 203 8.175431 AGATATTTAGGAACGGAGGGAGTATTA 58.825 37.037 0.00 0.00 0.00 0.98
203 204 8.731591 ATATTTAGGAACGGAGGGAGTATTAA 57.268 34.615 0.00 0.00 0.00 1.40
206 207 5.767277 AGGAACGGAGGGAGTATTAAAAA 57.233 39.130 0.00 0.00 0.00 1.94
227 228 2.807676 GGGCATACCTGGGAATATTGG 58.192 52.381 0.00 0.00 35.85 3.16
229 230 2.490718 GGCATACCTGGGAATATTGGCA 60.491 50.000 0.00 0.00 0.00 4.92
251 252 6.404623 GGCATGTTAGATGTTACAAGCAATCA 60.405 38.462 10.66 0.00 39.87 2.57
257 258 6.389830 AGATGTTACAAGCAATCAACAACA 57.610 33.333 0.00 0.00 34.79 3.33
267 268 1.083489 ATCAACAACATACGTGGGCG 58.917 50.000 0.00 0.00 44.93 6.13
269 270 0.951525 CAACAACATACGTGGGCGGA 60.952 55.000 0.00 0.00 43.45 5.54
270 271 0.672401 AACAACATACGTGGGCGGAG 60.672 55.000 0.00 0.00 43.45 4.63
324 326 3.777106 TCAGCTTCTGTGGTGAAGATT 57.223 42.857 8.25 0.00 44.40 2.40
384 398 1.235724 GGTTGTACAGTGCCACTTCC 58.764 55.000 0.00 0.00 0.00 3.46
387 401 1.419381 TGTACAGTGCCACTTCCTCA 58.581 50.000 0.00 0.00 0.00 3.86
401 416 2.762535 TCCTCATTTTCCTCGGACAC 57.237 50.000 0.00 0.00 0.00 3.67
404 419 2.939103 CCTCATTTTCCTCGGACACATC 59.061 50.000 0.00 0.00 0.00 3.06
423 438 3.924114 TCACTTCCAACAAGACTTGGA 57.076 42.857 19.16 5.21 46.69 3.53
437 452 2.485814 GACTTGGAGTCCAGCATTTGTC 59.514 50.000 12.67 10.83 39.28 3.18
444 459 3.074412 AGTCCAGCATTTGTCTTAACCG 58.926 45.455 0.00 0.00 0.00 4.44
451 466 4.685628 AGCATTTGTCTTAACCGCAATTTG 59.314 37.500 0.00 0.00 0.00 2.32
455 470 4.217754 TGTCTTAACCGCAATTTGACAC 57.782 40.909 0.00 0.00 0.00 3.67
464 479 3.490761 CCGCAATTTGACACTGAAACCTT 60.491 43.478 0.00 0.00 0.00 3.50
466 481 5.460646 CGCAATTTGACACTGAAACCTTAT 58.539 37.500 0.00 0.00 0.00 1.73
482 497 4.484912 ACCTTATTTTTACCACCAGGCAA 58.515 39.130 0.00 0.00 39.06 4.52
485 500 5.461032 TTATTTTTACCACCAGGCAACAG 57.539 39.130 0.00 0.00 39.06 3.16
496 511 0.598065 AGGCAACAGCACGGAATTTC 59.402 50.000 0.00 0.00 41.41 2.17
497 512 0.388520 GGCAACAGCACGGAATTTCC 60.389 55.000 5.28 5.28 0.00 3.13
503 518 0.893727 AGCACGGAATTTCCCCACAC 60.894 55.000 9.87 0.00 31.13 3.82
515 530 2.128535 TCCCCACACTTTGTCCTTACA 58.871 47.619 0.00 0.00 0.00 2.41
526 541 3.118454 CCTTACACTGCGCCACCG 61.118 66.667 4.18 0.00 37.57 4.94
579 594 9.607988 TGTTCTATGTACTGAAAACTGAAAAGA 57.392 29.630 0.00 0.00 0.00 2.52
608 623 5.843673 TGTAGAGGATAGCTCAAGACAAG 57.156 43.478 0.00 0.00 0.00 3.16
626 641 7.651027 AGACAAGCTGCTCCAATTTATTTAT 57.349 32.000 1.00 0.00 0.00 1.40
657 681 6.070481 TGCCATAACTGAATCAGTAACAGGTA 60.070 38.462 17.04 12.42 44.62 3.08
659 683 7.011482 GCCATAACTGAATCAGTAACAGGTAAG 59.989 40.741 17.04 1.50 44.62 2.34
660 684 7.495934 CCATAACTGAATCAGTAACAGGTAAGG 59.504 40.741 17.04 6.84 44.62 2.69
661 685 6.681729 AACTGAATCAGTAACAGGTAAGGA 57.318 37.500 17.04 0.00 44.62 3.36
662 686 6.038997 ACTGAATCAGTAACAGGTAAGGAC 57.961 41.667 15.09 0.00 43.46 3.85
664 688 6.042781 ACTGAATCAGTAACAGGTAAGGACAA 59.957 38.462 15.09 0.00 43.46 3.18
665 689 6.464222 TGAATCAGTAACAGGTAAGGACAAG 58.536 40.000 0.00 0.00 0.00 3.16
666 690 6.042781 TGAATCAGTAACAGGTAAGGACAAGT 59.957 38.462 0.00 0.00 0.00 3.16
667 691 5.881923 TCAGTAACAGGTAAGGACAAGTT 57.118 39.130 0.00 0.00 0.00 2.66
668 692 5.850614 TCAGTAACAGGTAAGGACAAGTTC 58.149 41.667 0.00 0.00 0.00 3.01
669 693 4.684703 CAGTAACAGGTAAGGACAAGTTCG 59.315 45.833 0.00 0.00 0.00 3.95
670 694 2.165319 ACAGGTAAGGACAAGTTCGC 57.835 50.000 0.00 0.00 0.00 4.70
671 695 1.270678 ACAGGTAAGGACAAGTTCGCC 60.271 52.381 0.00 0.00 0.00 5.54
672 696 0.037605 AGGTAAGGACAAGTTCGCCG 60.038 55.000 0.00 0.00 0.00 6.46
673 697 0.320160 GGTAAGGACAAGTTCGCCGT 60.320 55.000 0.00 0.00 0.00 5.68
675 699 2.257034 GTAAGGACAAGTTCGCCGTAG 58.743 52.381 0.00 0.00 0.00 3.51
676 700 0.677842 AAGGACAAGTTCGCCGTAGT 59.322 50.000 0.00 0.00 0.00 2.73
677 701 0.038526 AGGACAAGTTCGCCGTAGTG 60.039 55.000 0.00 0.00 0.00 2.74
678 702 1.623973 GGACAAGTTCGCCGTAGTGC 61.624 60.000 0.00 0.00 0.00 4.40
679 703 1.623973 GACAAGTTCGCCGTAGTGCC 61.624 60.000 0.00 0.00 0.00 5.01
680 704 2.431942 AAGTTCGCCGTAGTGCCG 60.432 61.111 0.00 0.00 0.00 5.69
682 706 2.814183 AAGTTCGCCGTAGTGCCGAG 62.814 60.000 0.00 0.00 32.14 4.63
683 707 3.057548 TTCGCCGTAGTGCCGAGA 61.058 61.111 0.00 0.00 32.14 4.04
686 710 2.879462 GCCGTAGTGCCGAGAACG 60.879 66.667 0.00 0.00 39.43 3.95
687 711 2.879462 CCGTAGTGCCGAGAACGC 60.879 66.667 0.00 0.00 38.29 4.84
688 712 2.126618 CGTAGTGCCGAGAACGCA 60.127 61.111 0.00 0.00 38.29 5.24
689 713 2.152699 CGTAGTGCCGAGAACGCAG 61.153 63.158 0.00 0.00 38.29 5.18
690 714 2.126071 TAGTGCCGAGAACGCAGC 60.126 61.111 0.00 0.00 38.29 5.25
691 715 2.636412 TAGTGCCGAGAACGCAGCT 61.636 57.895 0.00 0.00 38.29 4.24
693 717 2.161486 GTGCCGAGAACGCAGCTAG 61.161 63.158 0.00 0.00 38.29 3.42
695 719 2.492090 CCGAGAACGCAGCTAGCT 59.508 61.111 12.68 12.68 42.61 3.32
696 720 1.587613 CCGAGAACGCAGCTAGCTC 60.588 63.158 16.15 9.12 42.61 4.09
697 721 1.587613 CGAGAACGCAGCTAGCTCC 60.588 63.158 16.15 4.43 42.61 4.70
698 722 1.813192 GAGAACGCAGCTAGCTCCT 59.187 57.895 16.15 7.03 42.61 3.69
699 723 0.248866 GAGAACGCAGCTAGCTCCTC 60.249 60.000 16.15 12.18 42.61 3.71
701 725 2.636778 GAACGCAGCTAGCTCCTCCC 62.637 65.000 16.15 0.49 42.61 4.30
703 727 3.151022 GCAGCTAGCTCCTCCCGT 61.151 66.667 16.15 0.00 41.15 5.28
704 728 2.811101 CAGCTAGCTCCTCCCGTG 59.189 66.667 16.15 0.00 0.00 4.94
705 729 3.151022 AGCTAGCTCCTCCCGTGC 61.151 66.667 12.68 0.00 0.00 5.34
707 731 2.811101 CTAGCTCCTCCCGTGCAG 59.189 66.667 0.00 0.00 33.25 4.41
710 734 2.781431 TAGCTCCTCCCGTGCAGACA 62.781 60.000 0.00 0.00 33.25 3.41
711 735 3.023949 GCTCCTCCCGTGCAGACAT 62.024 63.158 0.00 0.00 0.00 3.06
713 737 0.742281 CTCCTCCCGTGCAGACATTG 60.742 60.000 0.00 0.00 0.00 2.82
714 738 1.003355 CCTCCCGTGCAGACATTGT 60.003 57.895 0.00 0.00 0.00 2.71
715 739 1.300971 CCTCCCGTGCAGACATTGTG 61.301 60.000 0.00 0.00 0.00 3.33
716 740 0.603707 CTCCCGTGCAGACATTGTGT 60.604 55.000 0.00 0.00 0.00 3.72
732 756 1.072806 TGTGTCATTCTTCCAGCTGCT 59.927 47.619 8.66 0.00 0.00 4.24
733 757 2.157738 GTGTCATTCTTCCAGCTGCTT 58.842 47.619 8.66 0.00 0.00 3.91
734 758 2.161211 GTGTCATTCTTCCAGCTGCTTC 59.839 50.000 8.66 0.00 0.00 3.86
745 769 3.134804 TCCAGCTGCTTCCTAGGAATAAC 59.865 47.826 24.48 16.63 33.28 1.89
766 855 4.632153 ACTACTGTGTCATTCTTCCACAC 58.368 43.478 0.00 0.00 40.77 3.82
853 943 1.271656 CAGCTGCCAAAGGGAAAGAAG 59.728 52.381 0.00 0.00 35.59 2.85
856 946 2.365293 GCTGCCAAAGGGAAAGAAGAAA 59.635 45.455 0.00 0.00 35.59 2.52
871 1003 5.559148 AGAAGAAAGGACACACTGAAGAT 57.441 39.130 0.00 0.00 0.00 2.40
883 1015 5.247110 ACACACTGAAGATTAGTCATCCAGT 59.753 40.000 0.00 0.00 31.20 4.00
896 3117 0.543749 ATCCAGTAGCAGCTTCCACC 59.456 55.000 0.00 0.00 0.00 4.61
922 3147 3.615155 TGTTGTGTGTTGATTGAGGACA 58.385 40.909 0.00 0.00 0.00 4.02
938 3163 1.535462 GGACATCACAACAACGGAAGG 59.465 52.381 0.00 0.00 0.00 3.46
942 3167 1.010125 CACAACAACGGAAGGCACG 60.010 57.895 0.00 0.00 37.36 5.34
961 3186 6.924060 AGGCACGCTAGTTAAATACTCATAAG 59.076 38.462 0.00 0.00 38.33 1.73
1013 3241 4.710423 AACACAACATGCAAACACTACA 57.290 36.364 0.00 0.00 0.00 2.74
1100 3334 3.063510 TCTCTTGGAAGAAGCACATGG 57.936 47.619 0.00 0.00 34.03 3.66
1104 3338 5.090553 TCTTGGAAGAAGCACATGGGACA 62.091 47.826 0.00 0.00 35.38 4.02
1124 3358 0.390860 CGTCATGGAGGGATCTCACC 59.609 60.000 1.38 1.38 41.69 4.02
1168 3402 2.832129 CTCCACTGGAAGGCTACACTTA 59.168 50.000 0.00 0.00 39.30 2.24
1178 3412 3.240302 AGGCTACACTTACAAGTCCACT 58.760 45.455 0.00 0.00 37.08 4.00
1180 3414 3.006537 GGCTACACTTACAAGTCCACTGA 59.993 47.826 0.00 0.00 37.08 3.41
1190 3424 3.054582 ACAAGTCCACTGATGCAGATGAT 60.055 43.478 0.82 0.00 35.18 2.45
1200 3434 3.181443 TGATGCAGATGATCTCTTGGCAT 60.181 43.478 15.24 15.24 42.96 4.40
1201 3435 4.041198 TGATGCAGATGATCTCTTGGCATA 59.959 41.667 15.27 4.97 41.33 3.14
1209 3443 6.888632 AGATGATCTCTTGGCATAAAAACACT 59.111 34.615 0.00 0.00 0.00 3.55
1358 3592 3.118482 TCAGCTCTTCCATTCCTCACATC 60.118 47.826 0.00 0.00 0.00 3.06
1741 3975 6.183360 TGTTTTGCTCCTGTTTGGTAATCAAT 60.183 34.615 0.00 0.00 34.98 2.57
1939 4173 5.831997 ACCTCAACATGCTAAACAAACTTC 58.168 37.500 0.00 0.00 0.00 3.01
2017 4251 4.954092 ATGCTCGATGAACTTTTTCTCC 57.046 40.909 0.00 0.00 32.36 3.71
2355 4590 6.966751 TCCTCAAGAATTTGGAGATCTCATT 58.033 36.000 23.85 14.69 34.97 2.57
2379 4614 3.056821 GCCTTGTTGAACTTGGGTTATCC 60.057 47.826 0.00 0.00 35.58 2.59
2421 4656 8.073768 GGACATTTACCCACAAATATATGTTCG 58.926 37.037 0.00 0.00 0.00 3.95
2436 4671 3.234630 TTCGGGTGGCAGACTTCGG 62.235 63.158 0.00 0.00 0.00 4.30
2458 4693 9.967346 TTCGGTATCTTTATGTCTCTTCTAATG 57.033 33.333 0.00 0.00 0.00 1.90
2459 4694 9.350951 TCGGTATCTTTATGTCTCTTCTAATGA 57.649 33.333 0.00 0.00 0.00 2.57
2460 4695 9.967346 CGGTATCTTTATGTCTCTTCTAATGAA 57.033 33.333 0.00 0.00 0.00 2.57
2514 4749 5.472148 ACATGTACGAGTTTGGTTCGAATA 58.528 37.500 0.00 0.00 40.36 1.75
2522 4757 5.006358 CGAGTTTGGTTCGAATATACCTTGG 59.994 44.000 0.00 0.00 40.36 3.61
2523 4758 4.638865 AGTTTGGTTCGAATATACCTTGGC 59.361 41.667 0.00 0.00 35.41 4.52
2535 4770 0.178990 ACCTTGGCAGGAACCAACTC 60.179 55.000 9.53 0.00 44.80 3.01
2588 4823 7.268586 GTGTATCCACAACTAACAGAGATGAT 58.731 38.462 0.00 0.00 41.44 2.45
2624 4859 1.000359 TCTCGGGGCAGATCTCACA 60.000 57.895 0.00 0.00 0.00 3.58
2642 4877 7.517614 TCTCACAAAATTTAGGTGCATGTAA 57.482 32.000 14.78 0.00 32.69 2.41
2664 4899 2.464865 CAGCTAATGGTACTGCGTCTC 58.535 52.381 0.00 0.00 0.00 3.36
2665 4900 1.409427 AGCTAATGGTACTGCGTCTCC 59.591 52.381 0.00 0.00 0.00 3.71
2666 4901 1.136305 GCTAATGGTACTGCGTCTCCA 59.864 52.381 0.00 7.51 0.00 3.86
2674 4909 3.252458 GGTACTGCGTCTCCAACAAAATT 59.748 43.478 0.00 0.00 0.00 1.82
2736 4971 7.636579 TGTCCAACCTAGTAGAACTATCACTA 58.363 38.462 0.00 0.00 29.08 2.74
2783 5019 4.836125 TTCCACAAGAAATCTGCACTTC 57.164 40.909 0.00 0.00 0.00 3.01
2791 5027 3.633525 AGAAATCTGCACTTCAGCAAACA 59.366 39.130 0.00 0.00 45.13 2.83
2925 5161 1.016415 TACCTGAGGAACTAGGGGCT 58.984 55.000 4.99 0.00 41.55 5.19
2955 5191 7.453393 TGAAACTACAGTCCTTGAAGATCAAT 58.547 34.615 0.00 0.00 35.59 2.57
2976 5212 1.680338 ACAACAACTTCAGTGGGAGC 58.320 50.000 0.00 0.00 0.00 4.70
2985 5221 4.357279 AGTGGGAGCTTGCCTGGC 62.357 66.667 12.87 12.87 0.00 4.85
3066 5302 3.065019 GGTGTATTACCGCAGCAATTG 57.935 47.619 0.00 0.00 40.26 2.32
3120 5356 9.466497 AATTTATCACATAATCAGTTCAGTGGT 57.534 29.630 0.00 0.00 0.00 4.16
3139 5375 4.044308 TGGTAGCATTCCATCCTCCTTTA 58.956 43.478 0.00 0.00 0.00 1.85
3229 5465 2.684881 CGGCTACTCCAAAATGCTTCAT 59.315 45.455 0.00 0.00 34.01 2.57
3246 5482 4.279420 GCTTCATCAAGTTGGTTTCTTCCT 59.721 41.667 2.34 0.00 31.45 3.36
3282 5518 2.359169 TAACCTCTCTGGCCTGCCG 61.359 63.158 3.32 0.00 40.22 5.69
3301 5537 1.889829 CGCCTTGTTATTCAACCCCAA 59.110 47.619 0.00 0.00 33.41 4.12
3312 5548 1.354031 TCAACCCCAATAGCTGCTCAA 59.646 47.619 4.91 0.00 0.00 3.02
3570 5806 4.501071 GAGGATACGGCAAAGTCTACAAA 58.499 43.478 0.00 0.00 46.39 2.83
3592 5828 1.371183 CAACTCCAAGACGGGCAGA 59.629 57.895 0.00 0.00 34.36 4.26
3627 5869 5.480642 AGAAGCTTCATCAGACAGAAGAA 57.519 39.130 27.57 0.00 42.95 2.52
3651 5893 6.355747 AGAGTTGGATGATGGAAGAAGATTC 58.644 40.000 0.00 0.00 0.00 2.52
3716 5958 7.844009 AGCATTGTCAAAATGTATGGATTCTT 58.156 30.769 0.00 0.00 0.00 2.52
3742 5984 6.851318 TCCCATCCAGCATATAAATTTCTCA 58.149 36.000 0.00 0.00 0.00 3.27
3750 5992 9.376075 CCAGCATATAAATTTCTCATCTACGAT 57.624 33.333 0.00 0.00 0.00 3.73
3774 6016 0.700564 TTCAGCAAGGAAGCCTCCAT 59.299 50.000 3.68 0.00 45.24 3.41
3832 6074 9.466497 AATTAGATTGGCAGAAGAGAATTGTTA 57.534 29.630 0.00 0.00 0.00 2.41
3839 6081 5.803967 GGCAGAAGAGAATTGTTATTGCAAG 59.196 40.000 4.94 0.00 0.00 4.01
3849 6091 2.889678 TGTTATTGCAAGTGATGTGGCA 59.110 40.909 4.94 0.00 0.00 4.92
3879 6121 7.654520 GCAATATCTTATTTGCACCATGAATGT 59.345 33.333 0.00 0.00 45.83 2.71
4066 6308 9.317827 TGTACTTGTATAACCTTCCTTCTTACT 57.682 33.333 0.00 0.00 0.00 2.24
4067 6309 9.800433 GTACTTGTATAACCTTCCTTCTTACTC 57.200 37.037 0.00 0.00 0.00 2.59
4068 6310 7.849160 ACTTGTATAACCTTCCTTCTTACTCC 58.151 38.462 0.00 0.00 0.00 3.85
4069 6311 6.803366 TGTATAACCTTCCTTCTTACTCCC 57.197 41.667 0.00 0.00 0.00 4.30
4070 6312 6.509386 TGTATAACCTTCCTTCTTACTCCCT 58.491 40.000 0.00 0.00 0.00 4.20
4071 6313 6.964086 TGTATAACCTTCCTTCTTACTCCCTT 59.036 38.462 0.00 0.00 0.00 3.95
4072 6314 4.912317 AACCTTCCTTCTTACTCCCTTC 57.088 45.455 0.00 0.00 0.00 3.46
4073 6315 4.149090 ACCTTCCTTCTTACTCCCTTCT 57.851 45.455 0.00 0.00 0.00 2.85
4074 6316 4.504382 ACCTTCCTTCTTACTCCCTTCTT 58.496 43.478 0.00 0.00 0.00 2.52
4075 6317 5.662597 ACCTTCCTTCTTACTCCCTTCTTA 58.337 41.667 0.00 0.00 0.00 2.10
4076 6318 6.089502 ACCTTCCTTCTTACTCCCTTCTTAA 58.910 40.000 0.00 0.00 0.00 1.85
4077 6319 6.561454 ACCTTCCTTCTTACTCCCTTCTTAAA 59.439 38.462 0.00 0.00 0.00 1.52
4078 6320 6.879993 CCTTCCTTCTTACTCCCTTCTTAAAC 59.120 42.308 0.00 0.00 0.00 2.01
4079 6321 7.383156 TTCCTTCTTACTCCCTTCTTAAACA 57.617 36.000 0.00 0.00 0.00 2.83
4080 6322 7.383156 TCCTTCTTACTCCCTTCTTAAACAA 57.617 36.000 0.00 0.00 0.00 2.83
4081 6323 7.808218 TCCTTCTTACTCCCTTCTTAAACAAA 58.192 34.615 0.00 0.00 0.00 2.83
4082 6324 8.445588 TCCTTCTTACTCCCTTCTTAAACAAAT 58.554 33.333 0.00 0.00 0.00 2.32
4083 6325 9.734984 CCTTCTTACTCCCTTCTTAAACAAATA 57.265 33.333 0.00 0.00 0.00 1.40
4090 6332 8.957466 ACTCCCTTCTTAAACAAATATAAGTGC 58.043 33.333 0.00 0.00 32.27 4.40
4091 6333 8.871629 TCCCTTCTTAAACAAATATAAGTGCA 57.128 30.769 0.00 0.00 32.27 4.57
4092 6334 9.474313 TCCCTTCTTAAACAAATATAAGTGCAT 57.526 29.630 0.00 0.00 32.27 3.96
4112 6354 9.890629 AGTGCATTTAGATCACTAAAGTAATGA 57.109 29.630 0.00 0.00 46.97 2.57
4122 6364 9.250624 GATCACTAAAGTAATGATCTAAACGCT 57.749 33.333 6.27 0.00 43.55 5.07
4123 6365 8.630278 TCACTAAAGTAATGATCTAAACGCTC 57.370 34.615 0.00 0.00 0.00 5.03
4124 6366 8.467598 TCACTAAAGTAATGATCTAAACGCTCT 58.532 33.333 0.00 0.00 0.00 4.09
4125 6367 9.088512 CACTAAAGTAATGATCTAAACGCTCTT 57.911 33.333 0.00 0.00 0.00 2.85
4142 6384 9.871238 AAACGCTCTTATATTTCTTTACAGAGA 57.129 29.630 0.00 0.00 0.00 3.10
4143 6385 9.522804 AACGCTCTTATATTTCTTTACAGAGAG 57.477 33.333 0.00 0.00 34.15 3.20
4144 6386 8.904834 ACGCTCTTATATTTCTTTACAGAGAGA 58.095 33.333 4.35 0.00 32.80 3.10
4145 6387 9.393249 CGCTCTTATATTTCTTTACAGAGAGAG 57.607 37.037 0.00 0.00 30.76 3.20
4225 6474 4.007659 TGCAGAACTCTCGTACACATCTA 58.992 43.478 0.00 0.00 0.00 1.98
4267 6516 4.980573 TGTCTATAGCTTTGGTGTGGTTT 58.019 39.130 0.00 0.00 0.00 3.27
4270 6519 7.172342 TGTCTATAGCTTTGGTGTGGTTTTAT 58.828 34.615 0.00 0.00 0.00 1.40
4407 6674 5.241662 ACAACAGAAGAGAATCACTTAGCC 58.758 41.667 0.00 0.00 37.82 3.93
4416 6683 3.201708 AGAATCACTTAGCCCTGCTCATT 59.798 43.478 0.00 0.00 40.44 2.57
4504 6771 3.744660 ACACTCATCCAACAACCTTCTC 58.255 45.455 0.00 0.00 0.00 2.87
4550 6817 2.774007 CGCACTTACATTACAGCAAGC 58.226 47.619 0.00 0.00 0.00 4.01
4559 6826 0.605319 TTACAGCAAGCAAGGGACGG 60.605 55.000 0.00 0.00 0.00 4.79
4571 6838 3.746492 GCAAGGGACGGATGTTGATATAC 59.254 47.826 0.00 0.00 0.00 1.47
4575 6842 4.527038 AGGGACGGATGTTGATATACGATT 59.473 41.667 0.00 0.00 36.49 3.34
4604 6875 6.031964 TCTAGTGAGAATCCAGGGTCTATT 57.968 41.667 0.00 0.00 0.00 1.73
4614 6885 2.169769 CCAGGGTCTATTGTAGCGGAAA 59.830 50.000 0.00 0.00 0.00 3.13
4616 6887 2.835764 AGGGTCTATTGTAGCGGAAACA 59.164 45.455 0.00 0.00 0.00 2.83
4628 6899 4.287766 AGCGGAAACAGATTTAGGTTCT 57.712 40.909 0.00 0.00 0.00 3.01
4692 6982 9.443323 TCATGTCATCTCGAAGGTTTTATTTTA 57.557 29.630 0.00 0.00 0.00 1.52
4693 6983 9.708222 CATGTCATCTCGAAGGTTTTATTTTAG 57.292 33.333 0.00 0.00 0.00 1.85
4694 6984 7.748847 TGTCATCTCGAAGGTTTTATTTTAGC 58.251 34.615 0.00 0.00 0.00 3.09
4697 6987 6.737254 TCTCGAAGGTTTTATTTTAGCAGG 57.263 37.500 0.00 0.00 0.00 4.85
4743 7034 1.302431 CCCTGTTCACGACATGGCA 60.302 57.895 0.00 0.00 37.26 4.92
4750 7041 0.612744 TCACGACATGGCAGGATCAA 59.387 50.000 5.99 0.00 0.00 2.57
4788 7079 1.031571 GTCGCCTCATGGAATGGCAA 61.032 55.000 15.98 0.28 46.73 4.52
4807 7098 0.389426 AAAGTACCAGCCGTAGCGTG 60.389 55.000 0.00 0.00 46.67 5.34
4880 7171 2.224281 TGGTCATAGCGCAAGATTAGGG 60.224 50.000 11.47 0.00 43.02 3.53
4901 7199 6.684538 AGGGTATCTCTGTTACCTAGTTGAT 58.315 40.000 0.00 0.00 39.30 2.57
4910 7208 8.824756 TCTGTTACCTAGTTGATCTAATGAGT 57.175 34.615 0.00 0.00 0.00 3.41
4988 7287 8.517878 CAAAATATCCAGAGTGTTCACTGATTT 58.482 33.333 10.29 0.75 34.94 2.17
5008 7307 1.125093 TTCTCCCTCCCGTTTCTGCA 61.125 55.000 0.00 0.00 0.00 4.41
5013 7312 0.609131 CCTCCCGTTTCTGCACCAAT 60.609 55.000 0.00 0.00 0.00 3.16
5016 7315 3.016736 CTCCCGTTTCTGCACCAATAAT 58.983 45.455 0.00 0.00 0.00 1.28
5030 7329 9.155975 CTGCACCAATAATATATACTTCAGGAC 57.844 37.037 0.00 0.00 0.00 3.85
5071 7370 3.432378 AGTCTATCTGTCTGTCCGGTTT 58.568 45.455 0.00 0.00 0.00 3.27
5080 7379 3.813166 TGTCTGTCCGGTTTCTTGAAATC 59.187 43.478 0.00 0.00 0.00 2.17
5099 7398 5.604758 AATCTGTGCAGTCTCTATGCTTA 57.395 39.130 0.00 0.00 44.17 3.09
5103 7402 5.089970 TGTGCAGTCTCTATGCTTACATT 57.910 39.130 0.00 0.00 44.17 2.71
5143 7442 5.156355 CCACATGTGACACTTTCTTTATGC 58.844 41.667 27.46 0.00 0.00 3.14
5179 7478 7.933215 AGGGTACTTGAAATAATGGTGTAAC 57.067 36.000 0.00 0.00 0.00 2.50
5224 7523 2.481441 TGCTACCATGAACCTGAGGAT 58.519 47.619 4.99 0.00 0.00 3.24
5229 7529 3.960571 ACCATGAACCTGAGGATGAAAG 58.039 45.455 4.99 0.00 0.00 2.62
5241 7541 6.317663 TGAGGATGAAAGAATCAGAATCCA 57.682 37.500 0.00 0.00 42.53 3.41
5244 7544 7.670979 TGAGGATGAAAGAATCAGAATCCAAAA 59.329 33.333 0.00 0.00 42.53 2.44
5249 7549 7.651808 TGAAAGAATCAGAATCCAAAACTGAC 58.348 34.615 0.00 0.00 42.18 3.51
5250 7550 7.285172 TGAAAGAATCAGAATCCAAAACTGACA 59.715 33.333 0.00 0.00 42.18 3.58
5252 7552 7.388460 AGAATCAGAATCCAAAACTGACATC 57.612 36.000 0.00 0.00 42.18 3.06
5271 7571 6.600427 TGACATCATATCAGTTGTCATGCTTT 59.400 34.615 0.75 0.00 41.05 3.51
5290 7590 9.507280 CATGCTTTATTATGTAAACAGGAACAG 57.493 33.333 0.00 0.00 0.00 3.16
5304 7604 6.743575 ACAGGAACAGATAAATGTAAGCAC 57.256 37.500 0.00 0.00 31.70 4.40
5306 7606 5.351465 CAGGAACAGATAAATGTAAGCACGT 59.649 40.000 0.00 0.00 31.70 4.49
5308 7608 5.350365 GGAACAGATAAATGTAAGCACGTGA 59.650 40.000 22.23 0.00 31.70 4.35
5310 7610 6.408858 ACAGATAAATGTAAGCACGTGAAG 57.591 37.500 22.23 0.00 0.00 3.02
5320 7620 2.153913 CACGTGAAGCTAGGTGCAC 58.846 57.895 21.23 21.23 45.94 4.57
5322 7622 0.105964 ACGTGAAGCTAGGTGCACAA 59.894 50.000 28.24 4.96 45.94 3.33
5323 7623 1.225855 CGTGAAGCTAGGTGCACAAA 58.774 50.000 28.24 4.56 45.94 2.83
5326 7626 3.304659 CGTGAAGCTAGGTGCACAAAAAT 60.305 43.478 28.24 0.00 45.94 1.82
5328 7628 3.888323 TGAAGCTAGGTGCACAAAAATGA 59.112 39.130 20.43 0.00 45.94 2.57
5332 7632 5.857268 AGCTAGGTGCACAAAAATGAAAAT 58.143 33.333 20.43 0.00 45.94 1.82
5361 7661 9.632638 ATCACAATACTATGCAAAAGGACTTAT 57.367 29.630 0.00 0.00 0.00 1.73
5369 7669 7.868415 ACTATGCAAAAGGACTTATAGATCGTC 59.132 37.037 0.00 0.00 0.00 4.20
5371 7671 4.085004 GCAAAAGGACTTATAGATCGTCGC 60.085 45.833 0.00 0.00 0.00 5.19
5382 7682 0.924090 GATCGTCGCAGGACAATCAC 59.076 55.000 0.00 0.00 43.61 3.06
5394 7694 3.588842 AGGACAATCACAGGGAATCAAGA 59.411 43.478 0.00 0.00 0.00 3.02
5395 7695 4.043310 AGGACAATCACAGGGAATCAAGAA 59.957 41.667 0.00 0.00 0.00 2.52
5405 7705 7.872483 TCACAGGGAATCAAGAAAAATTAAAGC 59.128 33.333 0.00 0.00 0.00 3.51
5409 7709 8.377799 AGGGAATCAAGAAAAATTAAAGCATGT 58.622 29.630 0.00 0.00 0.00 3.21
5411 7711 7.959109 GGAATCAAGAAAAATTAAAGCATGTGC 59.041 33.333 0.00 0.00 42.49 4.57
5412 7712 6.783892 TCAAGAAAAATTAAAGCATGTGCC 57.216 33.333 0.57 0.00 43.38 5.01
5417 7717 5.590104 AAAATTAAAGCATGTGCCGTTTC 57.410 34.783 0.57 0.00 43.38 2.78
5431 7731 4.391830 GTGCCGTTTCAGATGTTCAATAGA 59.608 41.667 0.00 0.00 0.00 1.98
5434 7734 5.220491 GCCGTTTCAGATGTTCAATAGAGAC 60.220 44.000 0.00 0.00 0.00 3.36
5448 7748 9.046296 GTTCAATAGAGACTTCAAAGTTCAAGA 57.954 33.333 0.00 0.00 39.88 3.02
5454 7754 7.924940 AGAGACTTCAAAGTTCAAGATCAAAC 58.075 34.615 0.00 0.00 39.88 2.93
5461 7761 6.323482 TCAAAGTTCAAGATCAAACCCATCAA 59.677 34.615 0.00 0.00 0.00 2.57
5479 7779 6.374894 CCCATCAAATAACAAATGTTTGGCAT 59.625 34.615 3.85 0.55 42.34 4.40
5491 7792 2.941720 TGTTTGGCATGAAAAGGTTTGC 59.058 40.909 0.00 0.00 0.00 3.68
5503 7804 2.101640 AGGTTTGCATGTTCCCCTTT 57.898 45.000 0.00 0.00 0.00 3.11
5520 7821 8.418662 GTTCCCCTTTTATGTGTTTCTTTTACT 58.581 33.333 0.00 0.00 0.00 2.24
5521 7822 8.541899 TCCCCTTTTATGTGTTTCTTTTACTT 57.458 30.769 0.00 0.00 0.00 2.24
5522 7823 9.643735 TCCCCTTTTATGTGTTTCTTTTACTTA 57.356 29.630 0.00 0.00 0.00 2.24
5544 7845 9.692325 ACTTAAAAGATGAAGCTTGGATAATCT 57.308 29.630 2.10 1.62 0.00 2.40
5546 7847 6.857777 AAAGATGAAGCTTGGATAATCTCG 57.142 37.500 2.10 0.00 0.00 4.04
5559 7860 6.406370 TGGATAATCTCGAATTGTTCACACT 58.594 36.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.457436 GACAAATATTTAGGAACAAAGGGAGTA 57.543 33.333 0.00 0.00 0.00 2.59
37 38 8.581253 AGACAAATATTTAGGAACAAAGGGAG 57.419 34.615 0.00 0.00 0.00 4.30
39 40 9.996554 AAAAGACAAATATTTAGGAACAAAGGG 57.003 29.630 0.00 0.00 0.00 3.95
57 58 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
58 59 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
62 63 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
63 64 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
64 65 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
65 66 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
66 67 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
67 68 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
68 69 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
69 70 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
70 71 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
71 72 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
72 73 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
73 74 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
74 75 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
75 76 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
76 77 4.703897 CATCCGTATGTGGTAGTCCATTT 58.296 43.478 0.00 0.00 46.20 2.32
77 78 3.494398 GCATCCGTATGTGGTAGTCCATT 60.494 47.826 0.00 0.00 46.20 3.16
78 79 2.037251 GCATCCGTATGTGGTAGTCCAT 59.963 50.000 0.00 0.00 46.20 3.41
79 80 1.411246 GCATCCGTATGTGGTAGTCCA 59.589 52.381 0.00 0.00 36.08 4.02
80 81 1.411246 TGCATCCGTATGTGGTAGTCC 59.589 52.381 0.00 0.00 35.38 3.85
81 82 2.882927 TGCATCCGTATGTGGTAGTC 57.117 50.000 0.00 0.00 35.38 2.59
82 83 5.949952 TCTATATGCATCCGTATGTGGTAGT 59.050 40.000 0.19 0.00 35.38 2.73
83 84 6.127730 TGTCTATATGCATCCGTATGTGGTAG 60.128 42.308 0.19 0.00 35.38 3.18
84 85 5.712917 TGTCTATATGCATCCGTATGTGGTA 59.287 40.000 0.19 0.00 35.38 3.25
85 86 4.526650 TGTCTATATGCATCCGTATGTGGT 59.473 41.667 0.19 0.00 35.38 4.16
86 87 5.072040 TGTCTATATGCATCCGTATGTGG 57.928 43.478 0.19 0.00 35.38 4.17
87 88 8.877808 AATATGTCTATATGCATCCGTATGTG 57.122 34.615 0.19 0.00 35.38 3.21
88 89 9.890629 AAAATATGTCTATATGCATCCGTATGT 57.109 29.630 0.19 0.00 35.38 2.29
92 93 9.809096 CTCTAAAATATGTCTATATGCATCCGT 57.191 33.333 0.19 0.00 30.00 4.69
93 94 9.809096 ACTCTAAAATATGTCTATATGCATCCG 57.191 33.333 0.19 0.00 30.00 4.18
104 105 9.036980 AGTGAACCTACACTCTAAAATATGTCT 57.963 33.333 0.00 0.00 46.36 3.41
118 119 4.083271 GGAGCAAAATGAGTGAACCTACAC 60.083 45.833 0.00 0.00 40.60 2.90
119 120 4.072131 GGAGCAAAATGAGTGAACCTACA 58.928 43.478 0.00 0.00 0.00 2.74
120 121 3.125316 CGGAGCAAAATGAGTGAACCTAC 59.875 47.826 0.00 0.00 0.00 3.18
121 122 3.244422 ACGGAGCAAAATGAGTGAACCTA 60.244 43.478 0.00 0.00 0.00 3.08
122 123 2.154462 CGGAGCAAAATGAGTGAACCT 58.846 47.619 0.00 0.00 0.00 3.50
123 124 1.880027 ACGGAGCAAAATGAGTGAACC 59.120 47.619 0.00 0.00 0.00 3.62
124 125 4.154195 ACATACGGAGCAAAATGAGTGAAC 59.846 41.667 0.00 0.00 0.00 3.18
125 126 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
126 127 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
127 128 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
128 129 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
129 130 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
130 131 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
131 132 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
132 133 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
133 134 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
134 135 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
135 136 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
136 137 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
137 138 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
138 139 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
139 140 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
140 141 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
141 142 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
142 143 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
144 145 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
145 146 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
146 147 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
147 148 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
148 149 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
149 150 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
150 151 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
151 152 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
152 153 8.424918 TCTGTCTTTCTAGAGATTTCAACAAGT 58.575 33.333 0.00 0.00 0.00 3.16
153 154 8.824159 TCTGTCTTTCTAGAGATTTCAACAAG 57.176 34.615 0.00 0.00 0.00 3.16
164 165 9.672086 CGTTCCTAAATATCTGTCTTTCTAGAG 57.328 37.037 0.00 0.00 0.00 2.43
165 166 8.630917 CCGTTCCTAAATATCTGTCTTTCTAGA 58.369 37.037 0.00 0.00 0.00 2.43
166 167 8.630917 TCCGTTCCTAAATATCTGTCTTTCTAG 58.369 37.037 0.00 0.00 0.00 2.43
167 168 8.529424 TCCGTTCCTAAATATCTGTCTTTCTA 57.471 34.615 0.00 0.00 0.00 2.10
168 169 7.418025 CCTCCGTTCCTAAATATCTGTCTTTCT 60.418 40.741 0.00 0.00 0.00 2.52
169 170 6.702282 CCTCCGTTCCTAAATATCTGTCTTTC 59.298 42.308 0.00 0.00 0.00 2.62
170 171 6.408206 CCCTCCGTTCCTAAATATCTGTCTTT 60.408 42.308 0.00 0.00 0.00 2.52
171 172 5.070580 CCCTCCGTTCCTAAATATCTGTCTT 59.929 44.000 0.00 0.00 0.00 3.01
172 173 4.589374 CCCTCCGTTCCTAAATATCTGTCT 59.411 45.833 0.00 0.00 0.00 3.41
173 174 4.587684 TCCCTCCGTTCCTAAATATCTGTC 59.412 45.833 0.00 0.00 0.00 3.51
174 175 4.553678 TCCCTCCGTTCCTAAATATCTGT 58.446 43.478 0.00 0.00 0.00 3.41
175 176 4.589374 ACTCCCTCCGTTCCTAAATATCTG 59.411 45.833 0.00 0.00 0.00 2.90
176 177 4.817286 ACTCCCTCCGTTCCTAAATATCT 58.183 43.478 0.00 0.00 0.00 1.98
177 178 6.854091 ATACTCCCTCCGTTCCTAAATATC 57.146 41.667 0.00 0.00 0.00 1.63
178 179 8.731591 TTAATACTCCCTCCGTTCCTAAATAT 57.268 34.615 0.00 0.00 0.00 1.28
179 180 8.551682 TTTAATACTCCCTCCGTTCCTAAATA 57.448 34.615 0.00 0.00 0.00 1.40
180 181 7.441903 TTTAATACTCCCTCCGTTCCTAAAT 57.558 36.000 0.00 0.00 0.00 1.40
181 182 6.872585 TTTAATACTCCCTCCGTTCCTAAA 57.127 37.500 0.00 0.00 0.00 1.85
182 183 6.872585 TTTTAATACTCCCTCCGTTCCTAA 57.127 37.500 0.00 0.00 0.00 2.69
183 184 6.126968 CCTTTTTAATACTCCCTCCGTTCCTA 60.127 42.308 0.00 0.00 0.00 2.94
184 185 5.338953 CCTTTTTAATACTCCCTCCGTTCCT 60.339 44.000 0.00 0.00 0.00 3.36
185 186 4.880120 CCTTTTTAATACTCCCTCCGTTCC 59.120 45.833 0.00 0.00 0.00 3.62
186 187 4.880120 CCCTTTTTAATACTCCCTCCGTTC 59.120 45.833 0.00 0.00 0.00 3.95
187 188 4.851843 CCCTTTTTAATACTCCCTCCGTT 58.148 43.478 0.00 0.00 0.00 4.44
188 189 3.371273 GCCCTTTTTAATACTCCCTCCGT 60.371 47.826 0.00 0.00 0.00 4.69
189 190 3.211865 GCCCTTTTTAATACTCCCTCCG 58.788 50.000 0.00 0.00 0.00 4.63
190 191 4.245251 TGCCCTTTTTAATACTCCCTCC 57.755 45.455 0.00 0.00 0.00 4.30
191 192 5.768662 GGTATGCCCTTTTTAATACTCCCTC 59.231 44.000 0.00 0.00 0.00 4.30
192 193 5.435373 AGGTATGCCCTTTTTAATACTCCCT 59.565 40.000 0.00 0.00 42.73 4.20
193 194 5.535030 CAGGTATGCCCTTTTTAATACTCCC 59.465 44.000 0.00 0.00 42.73 4.30
194 195 5.535030 CCAGGTATGCCCTTTTTAATACTCC 59.465 44.000 0.00 0.00 42.73 3.85
195 196 5.535030 CCCAGGTATGCCCTTTTTAATACTC 59.465 44.000 0.00 0.00 42.73 2.59
196 197 5.194942 TCCCAGGTATGCCCTTTTTAATACT 59.805 40.000 0.00 0.00 42.73 2.12
197 198 5.451354 TCCCAGGTATGCCCTTTTTAATAC 58.549 41.667 0.00 0.00 42.73 1.89
198 199 5.735733 TCCCAGGTATGCCCTTTTTAATA 57.264 39.130 0.00 0.00 42.73 0.98
199 200 4.618378 TCCCAGGTATGCCCTTTTTAAT 57.382 40.909 0.00 0.00 42.73 1.40
200 201 4.405756 TTCCCAGGTATGCCCTTTTTAA 57.594 40.909 0.00 0.00 42.73 1.52
201 202 4.618378 ATTCCCAGGTATGCCCTTTTTA 57.382 40.909 0.00 0.00 42.73 1.52
202 203 3.490060 ATTCCCAGGTATGCCCTTTTT 57.510 42.857 0.00 0.00 42.73 1.94
203 204 4.832560 ATATTCCCAGGTATGCCCTTTT 57.167 40.909 0.00 0.00 42.73 2.27
225 226 4.331108 TGCTTGTAACATCTAACATGCCA 58.669 39.130 9.82 0.00 42.79 4.92
227 228 6.554419 TGATTGCTTGTAACATCTAACATGC 58.446 36.000 0.00 6.43 43.38 4.06
229 230 8.109705 TGTTGATTGCTTGTAACATCTAACAT 57.890 30.769 0.00 0.00 0.00 2.71
251 252 0.672401 CTCCGCCCACGTATGTTGTT 60.672 55.000 0.00 0.00 37.70 2.83
257 258 3.537874 GCCTCTCCGCCCACGTAT 61.538 66.667 0.00 0.00 37.70 3.06
267 268 0.250513 AACTTGGTCGATGCCTCTCC 59.749 55.000 0.00 0.00 0.00 3.71
269 270 0.976641 TCAACTTGGTCGATGCCTCT 59.023 50.000 0.00 0.00 0.00 3.69
270 271 1.363744 CTCAACTTGGTCGATGCCTC 58.636 55.000 0.00 0.00 0.00 4.70
301 302 2.700371 TCTTCACCACAGAAGCTGAAGA 59.300 45.455 6.66 6.66 44.00 2.87
308 309 3.672808 AGCAGAATCTTCACCACAGAAG 58.327 45.455 0.00 0.00 44.96 2.85
311 312 2.095364 GCAAGCAGAATCTTCACCACAG 60.095 50.000 0.00 0.00 0.00 3.66
324 326 1.266178 TAGCCTGTACAGCAAGCAGA 58.734 50.000 17.86 5.41 37.01 4.26
384 398 3.372206 GTGATGTGTCCGAGGAAAATGAG 59.628 47.826 0.00 0.00 0.00 2.90
387 401 3.703001 AGTGATGTGTCCGAGGAAAAT 57.297 42.857 0.00 0.00 0.00 1.82
423 438 3.074412 CGGTTAAGACAAATGCTGGACT 58.926 45.455 0.00 0.00 0.00 3.85
437 452 4.481930 TCAGTGTCAAATTGCGGTTAAG 57.518 40.909 0.00 0.00 0.00 1.85
444 459 7.713764 AAATAAGGTTTCAGTGTCAAATTGC 57.286 32.000 0.00 0.00 0.00 3.56
451 466 7.143340 GGTGGTAAAAATAAGGTTTCAGTGTC 58.857 38.462 0.00 0.00 0.00 3.67
455 470 6.687604 CCTGGTGGTAAAAATAAGGTTTCAG 58.312 40.000 0.00 0.00 0.00 3.02
464 479 3.257127 GCTGTTGCCTGGTGGTAAAAATA 59.743 43.478 0.00 0.00 39.59 1.40
466 481 1.410882 GCTGTTGCCTGGTGGTAAAAA 59.589 47.619 0.00 0.00 39.59 1.94
482 497 0.893727 GTGGGGAAATTCCGTGCTGT 60.894 55.000 5.87 0.00 37.43 4.40
485 500 0.893727 AGTGTGGGGAAATTCCGTGC 60.894 55.000 5.87 0.00 37.43 5.34
496 511 2.158667 AGTGTAAGGACAAAGTGTGGGG 60.159 50.000 0.00 0.00 37.31 4.96
497 512 2.878406 CAGTGTAAGGACAAAGTGTGGG 59.122 50.000 0.00 0.00 37.31 4.61
503 518 0.517316 GGCGCAGTGTAAGGACAAAG 59.483 55.000 10.83 0.00 37.31 2.77
526 541 1.605058 TAGCTCAAGGACTCGTGGCC 61.605 60.000 0.00 0.00 0.00 5.36
573 588 7.984617 AGCTATCCTCTACATGTTTCTCTTTTC 59.015 37.037 2.30 0.00 0.00 2.29
574 589 7.856415 AGCTATCCTCTACATGTTTCTCTTTT 58.144 34.615 2.30 0.00 0.00 2.27
575 590 7.124901 TGAGCTATCCTCTACATGTTTCTCTTT 59.875 37.037 2.30 0.00 41.35 2.52
576 591 6.609212 TGAGCTATCCTCTACATGTTTCTCTT 59.391 38.462 2.30 0.00 41.35 2.85
577 592 6.132658 TGAGCTATCCTCTACATGTTTCTCT 58.867 40.000 2.30 0.00 41.35 3.10
578 593 6.398234 TGAGCTATCCTCTACATGTTTCTC 57.602 41.667 2.30 0.00 41.35 2.87
579 594 6.609212 TCTTGAGCTATCCTCTACATGTTTCT 59.391 38.462 2.30 0.00 41.35 2.52
608 623 7.307573 GCAATTCCATAAATAAATTGGAGCAGC 60.308 37.037 8.59 0.00 40.48 5.25
626 641 5.263599 ACTGATTCAGTTATGGCAATTCCA 58.736 37.500 13.61 0.02 45.54 3.53
645 660 5.508489 CGAACTTGTCCTTACCTGTTACTGA 60.508 44.000 0.00 0.00 0.00 3.41
657 681 0.677842 ACTACGGCGAACTTGTCCTT 59.322 50.000 16.62 0.00 0.00 3.36
659 683 1.623973 GCACTACGGCGAACTTGTCC 61.624 60.000 16.62 0.00 0.00 4.02
660 684 1.623973 GGCACTACGGCGAACTTGTC 61.624 60.000 16.62 2.31 33.57 3.18
661 685 1.666872 GGCACTACGGCGAACTTGT 60.667 57.895 16.62 1.29 33.57 3.16
662 686 3.165498 GGCACTACGGCGAACTTG 58.835 61.111 16.62 6.03 33.57 3.16
669 693 2.879462 CGTTCTCGGCACTACGGC 60.879 66.667 0.00 0.00 0.00 5.68
670 694 2.879462 GCGTTCTCGGCACTACGG 60.879 66.667 0.00 0.00 37.56 4.02
671 695 2.126618 TGCGTTCTCGGCACTACG 60.127 61.111 0.00 0.00 37.56 3.51
672 696 2.445438 GCTGCGTTCTCGGCACTAC 61.445 63.158 0.00 0.00 37.56 2.73
673 697 1.310216 TAGCTGCGTTCTCGGCACTA 61.310 55.000 0.00 0.00 37.56 2.74
675 699 2.126071 TAGCTGCGTTCTCGGCAC 60.126 61.111 0.00 0.00 37.56 5.01
676 700 2.181777 CTAGCTGCGTTCTCGGCA 59.818 61.111 0.00 0.00 37.56 5.69
677 701 3.258290 GCTAGCTGCGTTCTCGGC 61.258 66.667 7.70 0.00 37.56 5.54
686 710 3.151022 ACGGGAGGAGCTAGCTGC 61.151 66.667 27.23 27.23 43.29 5.25
687 711 2.811101 CACGGGAGGAGCTAGCTG 59.189 66.667 24.99 9.12 0.00 4.24
688 712 3.151022 GCACGGGAGGAGCTAGCT 61.151 66.667 19.45 19.45 33.13 3.32
689 713 3.438017 CTGCACGGGAGGAGCTAGC 62.438 68.421 6.62 6.62 36.22 3.42
690 714 1.754621 TCTGCACGGGAGGAGCTAG 60.755 63.158 0.00 0.00 36.22 3.42
691 715 2.052690 GTCTGCACGGGAGGAGCTA 61.053 63.158 0.00 0.00 36.22 3.32
693 717 2.527951 AATGTCTGCACGGGAGGAGC 62.528 60.000 0.00 0.00 35.87 4.70
695 719 1.296392 CAATGTCTGCACGGGAGGA 59.704 57.895 0.00 0.00 0.00 3.71
696 720 1.003355 ACAATGTCTGCACGGGAGG 60.003 57.895 0.00 0.00 0.00 4.30
697 721 0.603707 ACACAATGTCTGCACGGGAG 60.604 55.000 0.00 0.00 0.00 4.30
698 722 0.602638 GACACAATGTCTGCACGGGA 60.603 55.000 0.00 0.00 43.73 5.14
699 723 1.868997 GACACAATGTCTGCACGGG 59.131 57.895 1.64 0.00 43.73 5.28
703 727 6.771630 CTGGAAGAATGACACAATGTCTGCA 61.772 44.000 10.15 0.88 42.06 4.41
704 728 4.379186 CTGGAAGAATGACACAATGTCTGC 60.379 45.833 10.15 0.58 42.06 4.26
705 729 4.379186 GCTGGAAGAATGACACAATGTCTG 60.379 45.833 10.15 0.00 42.06 3.51
707 731 3.755378 AGCTGGAAGAATGACACAATGTC 59.245 43.478 1.90 1.90 41.95 3.06
710 734 2.490903 GCAGCTGGAAGAATGACACAAT 59.509 45.455 17.12 0.00 34.07 2.71
711 735 1.881973 GCAGCTGGAAGAATGACACAA 59.118 47.619 17.12 0.00 34.07 3.33
713 737 1.818642 AGCAGCTGGAAGAATGACAC 58.181 50.000 17.12 0.00 34.07 3.67
714 738 2.430465 GAAGCAGCTGGAAGAATGACA 58.570 47.619 17.12 0.00 34.07 3.58
715 739 1.742268 GGAAGCAGCTGGAAGAATGAC 59.258 52.381 17.12 0.00 34.07 3.06
716 740 1.632409 AGGAAGCAGCTGGAAGAATGA 59.368 47.619 17.12 0.00 34.07 2.57
717 741 2.125773 AGGAAGCAGCTGGAAGAATG 57.874 50.000 17.12 0.00 34.07 2.67
719 743 1.556911 CCTAGGAAGCAGCTGGAAGAA 59.443 52.381 17.12 0.00 34.07 2.52
720 744 1.198713 CCTAGGAAGCAGCTGGAAGA 58.801 55.000 17.12 0.00 34.07 2.87
721 745 1.198713 TCCTAGGAAGCAGCTGGAAG 58.801 55.000 17.12 0.00 0.00 3.46
722 746 1.656587 TTCCTAGGAAGCAGCTGGAA 58.343 50.000 20.72 7.00 0.00 3.53
723 747 1.885049 ATTCCTAGGAAGCAGCTGGA 58.115 50.000 27.58 3.35 37.56 3.86
724 748 3.135530 AGTTATTCCTAGGAAGCAGCTGG 59.864 47.826 27.58 0.00 37.56 4.85
726 750 5.069781 CAGTAGTTATTCCTAGGAAGCAGCT 59.930 44.000 27.58 23.96 37.56 4.24
727 751 5.163395 ACAGTAGTTATTCCTAGGAAGCAGC 60.163 44.000 27.58 19.14 37.56 5.25
732 756 7.973048 ATGACACAGTAGTTATTCCTAGGAA 57.027 36.000 26.24 26.24 38.59 3.36
733 757 7.839705 AGAATGACACAGTAGTTATTCCTAGGA 59.160 37.037 7.62 7.62 42.30 2.94
734 758 8.012957 AGAATGACACAGTAGTTATTCCTAGG 57.987 38.462 0.82 0.82 42.30 3.02
745 769 3.675225 CGTGTGGAAGAATGACACAGTAG 59.325 47.826 0.00 0.00 44.79 2.57
806 896 2.554462 GGGCAGACAGTTTTTCCTTCTC 59.446 50.000 0.00 0.00 0.00 2.87
853 943 6.223852 TGACTAATCTTCAGTGTGTCCTTTC 58.776 40.000 0.00 0.00 0.00 2.62
856 946 5.105146 GGATGACTAATCTTCAGTGTGTCCT 60.105 44.000 0.00 0.00 35.43 3.85
871 1003 3.133003 GGAAGCTGCTACTGGATGACTAA 59.867 47.826 0.90 0.00 0.00 2.24
883 1015 0.036732 CAGTTGGGTGGAAGCTGCTA 59.963 55.000 0.90 0.00 0.00 3.49
896 3117 4.353737 CTCAATCAACACACAACAGTTGG 58.646 43.478 17.76 8.92 43.91 3.77
922 3147 0.951558 GTGCCTTCCGTTGTTGTGAT 59.048 50.000 0.00 0.00 0.00 3.06
938 3163 7.695869 ACTTATGAGTATTTAACTAGCGTGC 57.304 36.000 0.00 0.00 39.07 5.34
961 3186 1.790755 TGTGATTCCGTGCACACTAC 58.209 50.000 18.64 7.13 39.86 2.73
1013 3241 2.088950 GCAAGATGGCATTTTGCTGT 57.911 45.000 35.20 0.35 44.28 4.40
1100 3334 0.105039 GATCCCTCCATGACGTGTCC 59.895 60.000 0.00 0.00 0.00 4.02
1104 3338 1.115467 GTGAGATCCCTCCATGACGT 58.885 55.000 0.00 0.00 38.66 4.34
1107 3341 0.261696 TCGGTGAGATCCCTCCATGA 59.738 55.000 0.00 0.00 38.66 3.07
1124 3358 1.021390 GGCCATGTGTTGAGACCTCG 61.021 60.000 0.00 0.00 0.00 4.63
1168 3402 2.303890 TCATCTGCATCAGTGGACTTGT 59.696 45.455 0.00 0.00 32.61 3.16
1178 3412 2.171870 TGCCAAGAGATCATCTGCATCA 59.828 45.455 0.00 0.00 38.67 3.07
1180 3414 3.510531 ATGCCAAGAGATCATCTGCAT 57.489 42.857 4.68 4.68 40.84 3.96
1190 3424 4.700213 GGCTAGTGTTTTTATGCCAAGAGA 59.300 41.667 0.00 0.00 40.04 3.10
1200 3434 2.888414 GTTGCAGGGGCTAGTGTTTTTA 59.112 45.455 0.00 0.00 41.91 1.52
1201 3435 1.686587 GTTGCAGGGGCTAGTGTTTTT 59.313 47.619 0.00 0.00 41.91 1.94
1209 3443 2.954684 CGTCCAGTTGCAGGGGCTA 61.955 63.158 4.55 0.00 41.91 3.93
1320 3554 1.707632 CTGAGAAGTTGAGCTCACCG 58.292 55.000 18.03 0.00 36.31 4.94
1358 3592 9.039870 GGAGACTGTTGTTATGAAGATCAATAG 57.960 37.037 0.00 0.00 35.95 1.73
1939 4173 9.265901 ACCTGTTATTTGATTTCTATCGAGATG 57.734 33.333 0.00 0.00 33.23 2.90
2002 4236 9.912634 TTGATTTGTATGGAGAAAAAGTTCATC 57.087 29.630 0.00 0.00 36.09 2.92
2017 4251 4.160065 TGGGCCTGTGATTTGATTTGTATG 59.840 41.667 4.53 0.00 0.00 2.39
2355 4590 3.306472 AACCCAAGTTCAACAAGGCTA 57.694 42.857 0.00 0.00 0.00 3.93
2379 4614 7.860872 GGTAAATGTCCTGAAAGTAAGTTGTTG 59.139 37.037 0.00 0.00 0.00 3.33
2387 4622 5.570205 TGTGGGTAAATGTCCTGAAAGTA 57.430 39.130 0.00 0.00 0.00 2.24
2421 4656 0.179081 GATACCGAAGTCTGCCACCC 60.179 60.000 0.00 0.00 0.00 4.61
2458 4693 1.114627 GGAATGGGGCCACTGAATTC 58.885 55.000 6.53 7.33 0.00 2.17
2459 4694 0.413037 TGGAATGGGGCCACTGAATT 59.587 50.000 6.53 0.00 0.00 2.17
2460 4695 0.413037 TTGGAATGGGGCCACTGAAT 59.587 50.000 6.53 0.00 34.56 2.57
2522 4757 0.108585 TCCTGTGAGTTGGTTCCTGC 59.891 55.000 0.00 0.00 0.00 4.85
2523 4758 1.694150 TCTCCTGTGAGTTGGTTCCTG 59.306 52.381 0.00 0.00 39.75 3.86
2588 4823 4.273724 CCGAGAGTCTATTCGATGACAAGA 59.726 45.833 13.57 0.00 39.06 3.02
2624 4859 5.245977 AGCTGGTTACATGCACCTAAATTTT 59.754 36.000 14.30 0.00 35.07 1.82
2658 4893 4.382754 GTGATCAAATTTTGTTGGAGACGC 59.617 41.667 8.89 0.00 0.00 5.19
2664 4899 5.466393 GGAACCTGTGATCAAATTTTGTTGG 59.534 40.000 8.89 1.92 0.00 3.77
2665 4900 6.047870 TGGAACCTGTGATCAAATTTTGTTG 58.952 36.000 8.89 0.00 0.00 3.33
2666 4901 6.232581 TGGAACCTGTGATCAAATTTTGTT 57.767 33.333 8.89 0.84 0.00 2.83
2736 4971 4.586421 TCACCGCTGAGATGATTAGAATCT 59.414 41.667 4.02 0.00 37.09 2.40
2925 5161 4.713553 TCAAGGACTGTAGTTTCATGCAA 58.286 39.130 0.00 0.00 0.00 4.08
2955 5191 3.118038 AGCTCCCACTGAAGTTGTTGTTA 60.118 43.478 0.00 0.00 0.00 2.41
2985 5221 2.604462 GCCTGCTAAATTTCCAATTGCG 59.396 45.455 0.00 0.00 0.00 4.85
2988 5224 4.476628 CAGGCCTGCTAAATTTCCAATT 57.523 40.909 22.33 0.00 0.00 2.32
3018 5254 6.595326 TGAGGTTATTGTTGCTCACATCTAAG 59.405 38.462 0.00 0.00 34.43 2.18
3051 5287 0.033601 TCCCCAATTGCTGCGGTAAT 60.034 50.000 2.61 2.61 0.00 1.89
3066 5302 1.210478 TCTAGCATCTGCAACTTCCCC 59.790 52.381 4.79 0.00 45.16 4.81
3120 5356 5.684704 CTTGTAAAGGAGGATGGAATGCTA 58.315 41.667 0.00 0.00 41.71 3.49
3139 5375 1.251251 GAAAGGCTCACCATGCTTGT 58.749 50.000 0.00 0.00 39.06 3.16
3246 5482 6.499350 AGAGGTTACCACACAGACCTTTATTA 59.501 38.462 3.51 0.00 42.35 0.98
3282 5518 4.441495 GCTATTGGGGTTGAATAACAAGGC 60.441 45.833 0.00 0.00 39.30 4.35
3330 5566 1.939255 ACAATTGGCAAAAGCAAACCG 59.061 42.857 10.83 0.00 0.00 4.44
3373 5609 8.774890 ATTATTATGACAACAATTGCAGCAAA 57.225 26.923 12.97 0.00 0.00 3.68
3570 5806 1.071471 CCCGTCTTGGAGTTGTGCT 59.929 57.895 0.00 0.00 42.00 4.40
3592 5828 2.283145 AGCTTCTTCACAGCAACCAT 57.717 45.000 0.00 0.00 39.99 3.55
3627 5869 5.972327 ATCTTCTTCCATCATCCAACTCT 57.028 39.130 0.00 0.00 0.00 3.24
3651 5893 8.783093 TGTGTTAAGATTTCCATTTCACTACAG 58.217 33.333 0.00 0.00 0.00 2.74
3716 5958 7.095183 AGAAATTTATATGCTGGATGGGAGA 57.905 36.000 0.00 0.00 0.00 3.71
3742 5984 6.161855 TCCTTGCTGAATGTAATCGTAGAT 57.838 37.500 0.00 0.00 45.12 1.98
3750 5992 3.347216 GAGGCTTCCTTGCTGAATGTAA 58.653 45.455 0.00 0.00 31.76 2.41
3774 6016 3.700538 CTCCTCATTTTCCAATGTCCCA 58.299 45.455 0.00 0.00 40.78 4.37
3832 6074 1.330234 TGTGCCACATCACTTGCAAT 58.670 45.000 0.00 0.00 37.81 3.56
3839 6081 3.379372 AGATATTGCTTGTGCCACATCAC 59.621 43.478 0.00 0.00 38.71 3.06
3879 6121 6.135819 TCTCGATGGATTATAGGTGGACTA 57.864 41.667 0.00 0.00 35.80 2.59
4066 6308 8.871629 TGCACTTATATTTGTTTAAGAAGGGA 57.128 30.769 0.00 0.00 31.36 4.20
4086 6328 9.890629 TCATTACTTTAGTGATCTAAATGCACT 57.109 29.630 0.00 0.00 42.75 4.40
4096 6338 9.250624 AGCGTTTAGATCATTACTTTAGTGATC 57.749 33.333 9.54 9.54 46.33 2.92
4097 6339 9.250624 GAGCGTTTAGATCATTACTTTAGTGAT 57.749 33.333 0.00 0.00 37.77 3.06
4098 6340 8.467598 AGAGCGTTTAGATCATTACTTTAGTGA 58.532 33.333 0.00 0.00 37.82 3.41
4099 6341 8.635877 AGAGCGTTTAGATCATTACTTTAGTG 57.364 34.615 0.00 0.00 37.82 2.74
4116 6358 9.871238 TCTCTGTAAAGAAATATAAGAGCGTTT 57.129 29.630 0.00 0.00 0.00 3.60
4117 6359 9.522804 CTCTCTGTAAAGAAATATAAGAGCGTT 57.477 33.333 0.00 0.00 0.00 4.84
4118 6360 8.904834 TCTCTCTGTAAAGAAATATAAGAGCGT 58.095 33.333 0.00 0.00 0.00 5.07
4119 6361 9.393249 CTCTCTCTGTAAAGAAATATAAGAGCG 57.607 37.037 0.00 0.00 0.00 5.03
4130 6372 9.126151 CCTATGATGTACTCTCTCTGTAAAGAA 57.874 37.037 0.00 0.00 0.00 2.52
4131 6373 8.275758 ACCTATGATGTACTCTCTCTGTAAAGA 58.724 37.037 0.00 0.00 0.00 2.52
4132 6374 8.458573 ACCTATGATGTACTCTCTCTGTAAAG 57.541 38.462 0.00 0.00 0.00 1.85
4225 6474 6.236409 AGACATCACATTTCTCTGTCACAAT 58.764 36.000 0.00 0.00 38.90 2.71
4267 6516 5.012148 GCTTCCCCATCACTAGCTCTAATAA 59.988 44.000 0.00 0.00 0.00 1.40
4270 6519 2.700897 GCTTCCCCATCACTAGCTCTAA 59.299 50.000 0.00 0.00 0.00 2.10
4416 6683 1.604604 AGCAAGAAAACGCCAGCTTA 58.395 45.000 0.00 0.00 0.00 3.09
4425 6692 5.010012 TGGAGAAGATTCCAAGCAAGAAAAC 59.990 40.000 0.00 0.00 44.09 2.43
4504 6771 1.819632 GCACGGGGCATGAACTAGG 60.820 63.158 0.00 0.00 43.97 3.02
4550 6817 3.987868 CGTATATCAACATCCGTCCCTTG 59.012 47.826 0.00 0.00 0.00 3.61
4571 6838 6.333416 TGGATTCTCACTAGAAGTTGAATCG 58.667 40.000 17.24 0.00 44.79 3.34
4575 6842 4.467795 CCCTGGATTCTCACTAGAAGTTGA 59.532 45.833 0.00 0.00 44.79 3.18
4592 6859 1.063492 TCCGCTACAATAGACCCTGGA 60.063 52.381 0.00 0.00 0.00 3.86
4604 6875 4.546829 ACCTAAATCTGTTTCCGCTACA 57.453 40.909 0.00 0.00 0.00 2.74
4614 6885 4.215613 GGCAAAACGAGAACCTAAATCTGT 59.784 41.667 0.00 0.00 0.00 3.41
4616 6887 4.652822 AGGCAAAACGAGAACCTAAATCT 58.347 39.130 0.00 0.00 0.00 2.40
4628 6899 2.571212 ACATGACTTGAGGCAAAACGA 58.429 42.857 0.00 0.00 0.00 3.85
4743 7034 3.894759 ACAGCATGCAACTATTGATCCT 58.105 40.909 21.98 0.00 42.53 3.24
4750 7041 2.936498 GACCGTAACAGCATGCAACTAT 59.064 45.455 21.98 3.59 42.53 2.12
4788 7079 0.389426 CACGCTACGGCTGGTACTTT 60.389 55.000 0.00 0.00 36.09 2.66
4799 7090 2.915463 CCTCAAGTTCTAACACGCTACG 59.085 50.000 0.00 0.00 0.00 3.51
4807 7098 3.674997 TGACCATGCCTCAAGTTCTAAC 58.325 45.455 0.00 0.00 0.00 2.34
4910 7208 9.744468 GCTTTGTTCTCCTCTTTATTTAAACAA 57.256 29.630 0.00 0.00 34.58 2.83
4988 7287 0.036306 GCAGAAACGGGAGGGAGAAA 59.964 55.000 0.00 0.00 0.00 2.52
5008 7307 9.310449 ACTCGTCCTGAAGTATATATTATTGGT 57.690 33.333 0.00 0.00 0.00 3.67
5016 7315 7.720074 AGTCATGAACTCGTCCTGAAGTATATA 59.280 37.037 0.00 0.00 33.29 0.86
5057 7356 2.526304 TCAAGAAACCGGACAGACAG 57.474 50.000 9.46 0.00 0.00 3.51
5071 7370 4.613925 AGAGACTGCACAGATTTCAAGA 57.386 40.909 4.31 0.00 0.00 3.02
5080 7379 4.115401 TGTAAGCATAGAGACTGCACAG 57.885 45.455 0.00 0.00 42.15 3.66
5099 7398 8.871629 TGTGGGTATTACATCTAAACAAATGT 57.128 30.769 0.00 0.00 39.38 2.71
5103 7402 8.103935 TCACATGTGGGTATTACATCTAAACAA 58.896 33.333 25.16 0.00 36.67 2.83
5112 7411 4.901197 AGTGTCACATGTGGGTATTACA 57.099 40.909 25.16 17.34 0.00 2.41
5143 7442 2.549754 CAAGTACCCTTGCAGACAACAG 59.450 50.000 0.00 0.00 41.51 3.16
5196 7495 5.070446 TCAGGTTCATGGTAGCAATAGTAGG 59.930 44.000 0.00 0.00 0.00 3.18
5197 7496 6.161855 TCAGGTTCATGGTAGCAATAGTAG 57.838 41.667 0.00 0.00 0.00 2.57
5208 7507 3.588842 TCTTTCATCCTCAGGTTCATGGT 59.411 43.478 0.00 0.00 0.00 3.55
5224 7523 7.285172 TGTCAGTTTTGGATTCTGATTCTTTCA 59.715 33.333 0.00 0.00 39.77 2.69
5229 7529 7.149569 TGATGTCAGTTTTGGATTCTGATTC 57.850 36.000 0.00 0.00 39.77 2.52
5260 7560 9.237187 TCCTGTTTACATAATAAAGCATGACAA 57.763 29.630 0.00 0.00 0.00 3.18
5261 7561 8.800370 TCCTGTTTACATAATAAAGCATGACA 57.200 30.769 0.00 0.00 0.00 3.58
5266 7566 8.856153 TCTGTTCCTGTTTACATAATAAAGCA 57.144 30.769 0.00 0.00 0.00 3.91
5290 7590 5.470845 AGCTTCACGTGCTTACATTTATC 57.529 39.130 11.67 0.00 37.52 1.75
5293 7593 3.684788 CCTAGCTTCACGTGCTTACATTT 59.315 43.478 11.67 0.00 41.46 2.32
5296 7596 1.616865 ACCTAGCTTCACGTGCTTACA 59.383 47.619 11.67 0.00 41.46 2.41
5304 7604 1.225855 TTTGTGCACCTAGCTTCACG 58.774 50.000 15.69 0.00 45.94 4.35
5306 7606 3.888323 TCATTTTTGTGCACCTAGCTTCA 59.112 39.130 15.69 0.00 45.94 3.02
5308 7608 4.935352 TTCATTTTTGTGCACCTAGCTT 57.065 36.364 15.69 0.00 45.94 3.74
5310 7610 6.544038 AATTTTCATTTTTGTGCACCTAGC 57.456 33.333 15.69 0.00 45.96 3.42
5332 7632 9.461312 AGTCCTTTTGCATAGTATTGTGATAAA 57.539 29.630 0.00 0.00 0.00 1.40
5349 7649 5.041287 TGCGACGATCTATAAGTCCTTTTG 58.959 41.667 0.00 0.00 0.00 2.44
5355 7655 3.250280 TGTCCTGCGACGATCTATAAGTC 59.750 47.826 0.00 0.00 42.37 3.01
5365 7665 0.388520 CTGTGATTGTCCTGCGACGA 60.389 55.000 0.00 0.00 42.37 4.20
5369 7669 0.321564 TTCCCTGTGATTGTCCTGCG 60.322 55.000 0.00 0.00 0.00 5.18
5371 7671 3.354948 TGATTCCCTGTGATTGTCCTG 57.645 47.619 0.00 0.00 0.00 3.86
5382 7682 8.662141 CATGCTTTAATTTTTCTTGATTCCCTG 58.338 33.333 0.00 0.00 0.00 4.45
5394 7694 5.525378 TGAAACGGCACATGCTTTAATTTTT 59.475 32.000 3.48 0.00 41.70 1.94
5395 7695 5.053145 TGAAACGGCACATGCTTTAATTTT 58.947 33.333 3.48 0.00 41.70 1.82
5405 7705 2.226200 TGAACATCTGAAACGGCACATG 59.774 45.455 0.00 0.00 0.00 3.21
5409 7709 4.574892 TCTATTGAACATCTGAAACGGCA 58.425 39.130 0.00 0.00 0.00 5.69
5411 7711 6.102663 AGTCTCTATTGAACATCTGAAACGG 58.897 40.000 0.00 0.00 0.00 4.44
5412 7712 7.329471 TGAAGTCTCTATTGAACATCTGAAACG 59.671 37.037 0.00 0.00 0.00 3.60
5417 7717 8.545229 ACTTTGAAGTCTCTATTGAACATCTG 57.455 34.615 0.00 0.00 32.86 2.90
5431 7731 6.039829 GGGTTTGATCTTGAACTTTGAAGTCT 59.960 38.462 0.00 0.00 38.57 3.24
5434 7734 6.147864 TGGGTTTGATCTTGAACTTTGAAG 57.852 37.500 0.00 0.00 0.00 3.02
5448 7748 9.571816 AAACATTTGTTATTTGATGGGTTTGAT 57.428 25.926 0.00 0.00 37.25 2.57
5454 7754 5.704515 TGCCAAACATTTGTTATTTGATGGG 59.295 36.000 10.15 0.00 37.25 4.00
5461 7761 7.501892 ACCTTTTCATGCCAAACATTTGTTATT 59.498 29.630 3.79 0.00 36.64 1.40
5479 7779 2.103941 GGGGAACATGCAAACCTTTTCA 59.896 45.455 0.00 0.00 0.00 2.69
5491 7792 6.345096 AGAAACACATAAAAGGGGAACATG 57.655 37.500 0.00 0.00 0.00 3.21
5520 7821 8.830580 CGAGATTATCCAAGCTTCATCTTTTAA 58.169 33.333 0.00 0.00 28.29 1.52
5521 7822 8.204160 TCGAGATTATCCAAGCTTCATCTTTTA 58.796 33.333 0.00 0.00 28.29 1.52
5522 7823 7.050377 TCGAGATTATCCAAGCTTCATCTTTT 58.950 34.615 0.00 0.00 28.29 2.27
5523 7824 6.586344 TCGAGATTATCCAAGCTTCATCTTT 58.414 36.000 0.00 0.00 28.29 2.52
5526 7827 7.041508 ACAATTCGAGATTATCCAAGCTTCATC 60.042 37.037 0.00 0.00 28.29 2.92
5529 7830 6.610741 ACAATTCGAGATTATCCAAGCTTC 57.389 37.500 0.00 0.00 28.29 3.86
5535 7836 6.406370 AGTGTGAACAATTCGAGATTATCCA 58.594 36.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.