Multiple sequence alignment - TraesCS1B01G005500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G005500 | chr1B | 100.000 | 3938 | 0 | 0 | 1 | 3938 | 3576933 | 3572996 | 0.000000e+00 | 7273.0 |
1 | TraesCS1B01G005500 | chr1B | 86.169 | 1352 | 158 | 19 | 381 | 1721 | 4523317 | 4521984 | 0.000000e+00 | 1434.0 |
2 | TraesCS1B01G005500 | chr1B | 86.031 | 1081 | 133 | 14 | 378 | 1450 | 4205612 | 4206682 | 0.000000e+00 | 1144.0 |
3 | TraesCS1B01G005500 | chr1B | 84.994 | 793 | 92 | 13 | 2373 | 3164 | 4207768 | 4208534 | 0.000000e+00 | 780.0 |
4 | TraesCS1B01G005500 | chr1B | 84.994 | 793 | 88 | 12 | 2375 | 3167 | 4812023 | 4811262 | 0.000000e+00 | 776.0 |
5 | TraesCS1B01G005500 | chr1B | 83.254 | 627 | 77 | 11 | 1459 | 2077 | 4206952 | 4207558 | 5.750000e-153 | 551.0 |
6 | TraesCS1B01G005500 | chr1B | 85.714 | 336 | 33 | 8 | 5 | 336 | 4814229 | 4813905 | 1.360000e-89 | 340.0 |
7 | TraesCS1B01G005500 | chr1B | 85.075 | 335 | 38 | 5 | 5 | 336 | 4523644 | 4523319 | 8.160000e-87 | 331.0 |
8 | TraesCS1B01G005500 | chr1B | 83.234 | 334 | 34 | 12 | 5 | 336 | 4205300 | 4205613 | 1.790000e-73 | 287.0 |
9 | TraesCS1B01G005500 | chr1A | 94.686 | 2089 | 95 | 11 | 1 | 2077 | 2848129 | 2850213 | 0.000000e+00 | 3229.0 |
10 | TraesCS1B01G005500 | chr1A | 90.158 | 2093 | 166 | 29 | 5 | 2076 | 2549550 | 2551623 | 0.000000e+00 | 2687.0 |
11 | TraesCS1B01G005500 | chr1A | 85.578 | 2094 | 252 | 40 | 8 | 2077 | 3465347 | 3463280 | 0.000000e+00 | 2148.0 |
12 | TraesCS1B01G005500 | chr1A | 94.466 | 1012 | 43 | 6 | 2360 | 3363 | 2850410 | 2851416 | 0.000000e+00 | 1546.0 |
13 | TraesCS1B01G005500 | chr1A | 91.796 | 451 | 35 | 2 | 2484 | 2933 | 2569405 | 2569854 | 9.290000e-176 | 627.0 |
14 | TraesCS1B01G005500 | chr1A | 89.560 | 182 | 14 | 3 | 3362 | 3543 | 2851510 | 2851686 | 3.960000e-55 | 226.0 |
15 | TraesCS1B01G005500 | chr1D | 94.267 | 2093 | 100 | 13 | 1 | 2080 | 800502 | 798417 | 0.000000e+00 | 3182.0 |
16 | TraesCS1B01G005500 | chr1D | 90.642 | 2009 | 151 | 22 | 83 | 2077 | 896575 | 894590 | 0.000000e+00 | 2634.0 |
17 | TraesCS1B01G005500 | chr1D | 85.680 | 2095 | 255 | 28 | 8 | 2077 | 627949 | 625875 | 0.000000e+00 | 2165.0 |
18 | TraesCS1B01G005500 | chr1D | 86.007 | 1708 | 205 | 30 | 390 | 2077 | 469894 | 471587 | 0.000000e+00 | 1799.0 |
19 | TraesCS1B01G005500 | chr1D | 94.946 | 831 | 34 | 6 | 2360 | 3189 | 798223 | 797400 | 0.000000e+00 | 1295.0 |
20 | TraesCS1B01G005500 | chr1D | 91.629 | 657 | 49 | 4 | 2360 | 3013 | 894393 | 893740 | 0.000000e+00 | 904.0 |
21 | TraesCS1B01G005500 | chr1D | 86.094 | 791 | 80 | 14 | 2375 | 3164 | 625662 | 624901 | 0.000000e+00 | 824.0 |
22 | TraesCS1B01G005500 | chr1D | 86.721 | 610 | 57 | 11 | 2375 | 2979 | 471800 | 472390 | 0.000000e+00 | 656.0 |
23 | TraesCS1B01G005500 | chr1D | 92.758 | 359 | 24 | 2 | 3176 | 3532 | 796500 | 796142 | 5.830000e-143 | 518.0 |
24 | TraesCS1B01G005500 | chr1D | 83.497 | 509 | 78 | 6 | 1551 | 2055 | 728297 | 727791 | 1.660000e-128 | 470.0 |
25 | TraesCS1B01G005500 | chr1D | 84.703 | 438 | 45 | 6 | 2627 | 3064 | 725898 | 725483 | 6.090000e-113 | 418.0 |
26 | TraesCS1B01G005500 | chr1D | 88.927 | 289 | 28 | 2 | 3650 | 3938 | 796141 | 795857 | 1.740000e-93 | 353.0 |
27 | TraesCS1B01G005500 | chr1D | 86.012 | 336 | 32 | 9 | 5 | 336 | 469558 | 469882 | 2.910000e-91 | 346.0 |
28 | TraesCS1B01G005500 | chr1D | 93.651 | 63 | 2 | 1 | 5 | 65 | 896902 | 896840 | 4.190000e-15 | 93.5 |
29 | TraesCS1B01G005500 | chr5B | 98.932 | 281 | 3 | 0 | 2084 | 2364 | 496329148 | 496329428 | 1.630000e-138 | 503.0 |
30 | TraesCS1B01G005500 | chr2B | 100.000 | 272 | 0 | 0 | 2089 | 2360 | 250280257 | 250279986 | 1.630000e-138 | 503.0 |
31 | TraesCS1B01G005500 | chr2B | 98.592 | 284 | 4 | 0 | 2082 | 2365 | 663491288 | 663491005 | 1.630000e-138 | 503.0 |
32 | TraesCS1B01G005500 | chr2B | 81.675 | 573 | 76 | 19 | 2373 | 2939 | 800188015 | 800187466 | 2.160000e-122 | 449.0 |
33 | TraesCS1B01G005500 | chr2B | 89.552 | 67 | 7 | 0 | 3614 | 3680 | 413432168 | 413432234 | 7.010000e-13 | 86.1 |
34 | TraesCS1B01G005500 | chr2B | 85.897 | 78 | 11 | 0 | 3435 | 3512 | 413086531 | 413086608 | 2.520000e-12 | 84.2 |
35 | TraesCS1B01G005500 | chr2B | 94.444 | 36 | 2 | 0 | 3484 | 3519 | 122650401 | 122650366 | 5.500000e-04 | 56.5 |
36 | TraesCS1B01G005500 | chrUn | 98.929 | 280 | 3 | 0 | 2081 | 2360 | 302184162 | 302184441 | 5.870000e-138 | 501.0 |
37 | TraesCS1B01G005500 | chr3B | 98.582 | 282 | 4 | 0 | 2081 | 2362 | 690563767 | 690564048 | 2.110000e-137 | 499.0 |
38 | TraesCS1B01G005500 | chr6B | 98.246 | 285 | 4 | 1 | 2084 | 2368 | 189566513 | 189566230 | 7.600000e-137 | 497.0 |
39 | TraesCS1B01G005500 | chr2A | 83.186 | 565 | 73 | 15 | 2373 | 2933 | 766328009 | 766328555 | 7.600000e-137 | 497.0 |
40 | TraesCS1B01G005500 | chr2A | 98.227 | 282 | 5 | 0 | 2084 | 2365 | 46846710 | 46846991 | 9.830000e-136 | 494.0 |
41 | TraesCS1B01G005500 | chr2A | 95.556 | 45 | 2 | 0 | 3636 | 3680 | 461757326 | 461757282 | 5.460000e-09 | 73.1 |
42 | TraesCS1B01G005500 | chr4B | 98.571 | 280 | 4 | 0 | 2084 | 2363 | 572559329 | 572559608 | 2.730000e-136 | 496.0 |
43 | TraesCS1B01G005500 | chr4B | 76.994 | 539 | 98 | 17 | 3174 | 3690 | 421993631 | 421994165 | 6.440000e-73 | 285.0 |
44 | TraesCS1B01G005500 | chr7B | 97.887 | 284 | 6 | 0 | 2080 | 2363 | 330490621 | 330490904 | 3.540000e-135 | 492.0 |
45 | TraesCS1B01G005500 | chr3D | 83.333 | 108 | 12 | 5 | 3636 | 3737 | 168882732 | 168882625 | 1.160000e-15 | 95.3 |
46 | TraesCS1B01G005500 | chr7D | 74.603 | 189 | 39 | 8 | 3417 | 3600 | 17233639 | 17233455 | 1.520000e-09 | 75.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1B01G005500 | chr1B | 3572996 | 3576933 | 3937 | True | 7273.000000 | 7273 | 100.000000 | 1 | 3938 | 1 | chr1B.!!$R1 | 3937 |
1 | TraesCS1B01G005500 | chr1B | 4521984 | 4523644 | 1660 | True | 882.500000 | 1434 | 85.622000 | 5 | 1721 | 2 | chr1B.!!$R2 | 1716 |
2 | TraesCS1B01G005500 | chr1B | 4205300 | 4208534 | 3234 | False | 690.500000 | 1144 | 84.378250 | 5 | 3164 | 4 | chr1B.!!$F1 | 3159 |
3 | TraesCS1B01G005500 | chr1B | 4811262 | 4814229 | 2967 | True | 558.000000 | 776 | 85.354000 | 5 | 3167 | 2 | chr1B.!!$R3 | 3162 |
4 | TraesCS1B01G005500 | chr1A | 2549550 | 2551623 | 2073 | False | 2687.000000 | 2687 | 90.158000 | 5 | 2076 | 1 | chr1A.!!$F1 | 2071 |
5 | TraesCS1B01G005500 | chr1A | 3463280 | 3465347 | 2067 | True | 2148.000000 | 2148 | 85.578000 | 8 | 2077 | 1 | chr1A.!!$R1 | 2069 |
6 | TraesCS1B01G005500 | chr1A | 2848129 | 2851686 | 3557 | False | 1667.000000 | 3229 | 92.904000 | 1 | 3543 | 3 | chr1A.!!$F3 | 3542 |
7 | TraesCS1B01G005500 | chr1D | 624901 | 627949 | 3048 | True | 1494.500000 | 2165 | 85.887000 | 8 | 3164 | 2 | chr1D.!!$R1 | 3156 |
8 | TraesCS1B01G005500 | chr1D | 795857 | 800502 | 4645 | True | 1337.000000 | 3182 | 92.724500 | 1 | 3938 | 4 | chr1D.!!$R3 | 3937 |
9 | TraesCS1B01G005500 | chr1D | 893740 | 896902 | 3162 | True | 1210.500000 | 2634 | 91.974000 | 5 | 3013 | 3 | chr1D.!!$R4 | 3008 |
10 | TraesCS1B01G005500 | chr1D | 469558 | 472390 | 2832 | False | 933.666667 | 1799 | 86.246667 | 5 | 2979 | 3 | chr1D.!!$F1 | 2974 |
11 | TraesCS1B01G005500 | chr1D | 725483 | 728297 | 2814 | True | 444.000000 | 470 | 84.100000 | 1551 | 3064 | 2 | chr1D.!!$R2 | 1513 |
12 | TraesCS1B01G005500 | chr2B | 800187466 | 800188015 | 549 | True | 449.000000 | 449 | 81.675000 | 2373 | 2939 | 1 | chr2B.!!$R4 | 566 |
13 | TraesCS1B01G005500 | chr2A | 766328009 | 766328555 | 546 | False | 497.000000 | 497 | 83.186000 | 2373 | 2933 | 1 | chr2A.!!$F2 | 560 |
14 | TraesCS1B01G005500 | chr4B | 421993631 | 421994165 | 534 | False | 285.000000 | 285 | 76.994000 | 3174 | 3690 | 1 | chr4B.!!$F1 | 516 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
880 | 1147 | 3.189606 | TGGAATAACACCACATCCTCCT | 58.810 | 45.455 | 0.0 | 0.0 | 32.03 | 3.69 | F |
2104 | 2665 | 0.043334 | AGCCTGGTCATAGTGGGAGT | 59.957 | 55.000 | 0.0 | 0.0 | 0.00 | 3.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2341 | 2917 | 0.639943 | TAGGCTGGTCATAGTGGGGA | 59.360 | 55.0 | 0.00 | 0.00 | 0.00 | 4.81 | R |
3797 | 6900 | 0.035458 | AGGGGCTATATGTTGCGCTC | 59.965 | 55.0 | 9.73 | 2.14 | 41.08 | 5.03 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
50 | 53 | 8.166422 | ACTTATATGCCCAACTAAAATGTAGC | 57.834 | 34.615 | 0.00 | 0.00 | 0.00 | 3.58 |
145 | 395 | 5.711976 | CCTGTCATGAACTAACATTTCCCTT | 59.288 | 40.000 | 0.00 | 0.00 | 0.00 | 3.95 |
513 | 773 | 7.446625 | GCTAAATTATGGTCAATGGTCAGAGAT | 59.553 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
751 | 1016 | 4.782019 | ATCAAATCTTGTTTTGCGCCTA | 57.218 | 36.364 | 4.18 | 0.00 | 36.69 | 3.93 |
777 | 1042 | 6.127225 | CCACAAGGATGAGAGAAGATGTTCTA | 60.127 | 42.308 | 4.88 | 0.00 | 39.28 | 2.10 |
803 | 1068 | 3.508845 | AAGCACCTGAGTAACACCATT | 57.491 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
861 | 1128 | 6.373216 | TCACCAAAAGAGGTATAATTCGTTGG | 59.627 | 38.462 | 14.80 | 14.80 | 40.77 | 3.77 |
865 | 1132 | 9.116067 | CCAAAAGAGGTATAATTCGTTGGAATA | 57.884 | 33.333 | 12.84 | 0.00 | 41.99 | 1.75 |
878 | 1145 | 3.374058 | CGTTGGAATAACACCACATCCTC | 59.626 | 47.826 | 0.00 | 0.00 | 37.13 | 3.71 |
880 | 1147 | 3.189606 | TGGAATAACACCACATCCTCCT | 58.810 | 45.455 | 0.00 | 0.00 | 32.03 | 3.69 |
986 | 1256 | 8.863872 | ATTTCCCACTATAAATGTATGGTAGC | 57.136 | 34.615 | 0.00 | 0.00 | 30.77 | 3.58 |
1159 | 1430 | 4.013050 | CGAGCTGAGATGAGTATATGGGA | 58.987 | 47.826 | 0.00 | 0.00 | 0.00 | 4.37 |
1164 | 1435 | 6.673097 | AGCTGAGATGAGTATATGGGATTCAT | 59.327 | 38.462 | 0.00 | 0.00 | 39.78 | 2.57 |
1247 | 1518 | 6.899114 | AGGAAACTACAACTTAATTCAAGCG | 58.101 | 36.000 | 0.00 | 0.00 | 40.61 | 4.68 |
1490 | 2027 | 4.124851 | AGAGGCGTTATTGGACTAACTG | 57.875 | 45.455 | 0.00 | 0.00 | 30.88 | 3.16 |
1562 | 2103 | 4.158579 | CAGAAGGACTTAAAATCAAGGGGC | 59.841 | 45.833 | 0.00 | 0.00 | 0.00 | 5.80 |
1692 | 2233 | 0.324943 | GCTTAGCCTCAACCAGGTGA | 59.675 | 55.000 | 0.00 | 0.00 | 45.61 | 4.02 |
1755 | 2296 | 3.763360 | CTCCCAAATGTGCCACTATTTCA | 59.237 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
1882 | 2429 | 5.007430 | TGCAACTAACACAATGCCATTTTTG | 59.993 | 36.000 | 0.00 | 0.00 | 38.00 | 2.44 |
1917 | 2469 | 8.598202 | TGTGAAACATGAACTACCTAGGTATA | 57.402 | 34.615 | 22.02 | 9.50 | 45.67 | 1.47 |
1919 | 2471 | 7.924947 | GTGAAACATGAACTACCTAGGTATACC | 59.075 | 40.741 | 22.02 | 14.54 | 36.32 | 2.73 |
1995 | 2549 | 8.640063 | ACAATAATTTATGAGGAGCATGCATA | 57.360 | 30.769 | 21.98 | 5.48 | 37.87 | 3.14 |
2077 | 2638 | 5.294356 | ACTTAAGACGTGCATGACTTGTTA | 58.706 | 37.500 | 26.86 | 14.55 | 0.00 | 2.41 |
2080 | 2641 | 4.514781 | AGACGTGCATGACTTGTTAGTA | 57.485 | 40.909 | 14.17 | 0.00 | 33.84 | 1.82 |
2081 | 2642 | 4.878439 | AGACGTGCATGACTTGTTAGTAA | 58.122 | 39.130 | 14.17 | 0.00 | 33.84 | 2.24 |
2083 | 2644 | 4.628074 | ACGTGCATGACTTGTTAGTAAGT | 58.372 | 39.130 | 14.17 | 0.00 | 43.24 | 2.24 |
2084 | 2645 | 5.775686 | ACGTGCATGACTTGTTAGTAAGTA | 58.224 | 37.500 | 14.17 | 0.00 | 40.78 | 2.24 |
2086 | 2647 | 6.365247 | ACGTGCATGACTTGTTAGTAAGTAAG | 59.635 | 38.462 | 14.17 | 5.64 | 40.78 | 2.34 |
2087 | 2648 | 6.534934 | GTGCATGACTTGTTAGTAAGTAAGC | 58.465 | 40.000 | 0.00 | 0.00 | 40.78 | 3.09 |
2088 | 2649 | 5.642063 | TGCATGACTTGTTAGTAAGTAAGCC | 59.358 | 40.000 | 0.00 | 0.00 | 40.78 | 4.35 |
2089 | 2650 | 5.875359 | GCATGACTTGTTAGTAAGTAAGCCT | 59.125 | 40.000 | 0.00 | 0.00 | 40.78 | 4.58 |
2090 | 2651 | 6.183360 | GCATGACTTGTTAGTAAGTAAGCCTG | 60.183 | 42.308 | 0.00 | 4.40 | 40.78 | 4.85 |
2092 | 2653 | 5.306160 | TGACTTGTTAGTAAGTAAGCCTGGT | 59.694 | 40.000 | 0.00 | 0.00 | 40.78 | 4.00 |
2093 | 2654 | 5.791666 | ACTTGTTAGTAAGTAAGCCTGGTC | 58.208 | 41.667 | 0.00 | 0.00 | 39.03 | 4.02 |
2095 | 2656 | 6.013639 | ACTTGTTAGTAAGTAAGCCTGGTCAT | 60.014 | 38.462 | 0.00 | 0.00 | 39.03 | 3.06 |
2096 | 2657 | 7.179694 | ACTTGTTAGTAAGTAAGCCTGGTCATA | 59.820 | 37.037 | 0.00 | 0.00 | 39.03 | 2.15 |
2097 | 2658 | 7.108841 | TGTTAGTAAGTAAGCCTGGTCATAG | 57.891 | 40.000 | 0.00 | 0.00 | 0.00 | 2.23 |
2101 | 2662 | 2.119495 | AGTAAGCCTGGTCATAGTGGG | 58.881 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
2103 | 2664 | 1.207791 | AAGCCTGGTCATAGTGGGAG | 58.792 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2104 | 2665 | 0.043334 | AGCCTGGTCATAGTGGGAGT | 59.957 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2107 | 2668 | 2.158943 | GCCTGGTCATAGTGGGAGTAAC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 2.50 |
2109 | 2670 | 3.711704 | CCTGGTCATAGTGGGAGTAACAT | 59.288 | 47.826 | 0.00 | 0.00 | 0.00 | 2.71 |
2110 | 2671 | 4.899457 | CCTGGTCATAGTGGGAGTAACATA | 59.101 | 45.833 | 0.00 | 0.00 | 0.00 | 2.29 |
2111 | 2672 | 5.011125 | CCTGGTCATAGTGGGAGTAACATAG | 59.989 | 48.000 | 0.00 | 0.00 | 0.00 | 2.23 |
2112 | 2673 | 4.899457 | TGGTCATAGTGGGAGTAACATAGG | 59.101 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
2113 | 2674 | 4.900054 | GGTCATAGTGGGAGTAACATAGGT | 59.100 | 45.833 | 0.00 | 0.00 | 0.00 | 3.08 |
2114 | 2675 | 6.073314 | GGTCATAGTGGGAGTAACATAGGTA | 58.927 | 44.000 | 0.00 | 0.00 | 0.00 | 3.08 |
2118 | 2679 | 8.505246 | TCATAGTGGGAGTAACATAGGTAGTAA | 58.495 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
2119 | 2680 | 8.574737 | CATAGTGGGAGTAACATAGGTAGTAAC | 58.425 | 40.741 | 0.00 | 0.00 | 0.00 | 2.50 |
2121 | 2682 | 7.130775 | AGTGGGAGTAACATAGGTAGTAACAT | 58.869 | 38.462 | 0.00 | 0.00 | 0.00 | 2.71 |
2122 | 2683 | 8.284435 | AGTGGGAGTAACATAGGTAGTAACATA | 58.716 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
2123 | 2684 | 8.574737 | GTGGGAGTAACATAGGTAGTAACATAG | 58.425 | 40.741 | 0.00 | 0.00 | 0.00 | 2.23 |
2125 | 2686 | 9.531158 | GGGAGTAACATAGGTAGTAACATAGAT | 57.469 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
2127 | 2688 | 9.843334 | GAGTAACATAGGTAGTAACATAGATGC | 57.157 | 37.037 | 0.00 | 0.00 | 0.00 | 3.91 |
2128 | 2689 | 8.804204 | AGTAACATAGGTAGTAACATAGATGCC | 58.196 | 37.037 | 0.00 | 0.00 | 0.00 | 4.40 |
2129 | 2690 | 7.612065 | AACATAGGTAGTAACATAGATGCCA | 57.388 | 36.000 | 0.00 | 0.00 | 0.00 | 4.92 |
2130 | 2691 | 6.994221 | ACATAGGTAGTAACATAGATGCCAC | 58.006 | 40.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2131 | 2692 | 6.553476 | ACATAGGTAGTAACATAGATGCCACA | 59.447 | 38.462 | 0.00 | 0.00 | 0.00 | 4.17 |
2132 | 2693 | 7.235606 | ACATAGGTAGTAACATAGATGCCACAT | 59.764 | 37.037 | 0.00 | 0.00 | 0.00 | 3.21 |
2134 | 2695 | 7.612065 | AGGTAGTAACATAGATGCCACATAA | 57.388 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2135 | 2696 | 7.671302 | AGGTAGTAACATAGATGCCACATAAG | 58.329 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
2136 | 2697 | 6.369065 | GGTAGTAACATAGATGCCACATAAGC | 59.631 | 42.308 | 0.00 | 0.00 | 0.00 | 3.09 |
2137 | 2698 | 5.928976 | AGTAACATAGATGCCACATAAGCA | 58.071 | 37.500 | 0.00 | 0.00 | 45.94 | 3.91 |
2138 | 2699 | 6.356556 | AGTAACATAGATGCCACATAAGCAA | 58.643 | 36.000 | 0.00 | 0.00 | 44.83 | 3.91 |
2139 | 2700 | 6.828273 | AGTAACATAGATGCCACATAAGCAAA | 59.172 | 34.615 | 0.00 | 0.00 | 44.83 | 3.68 |
2140 | 2701 | 6.528537 | AACATAGATGCCACATAAGCAAAA | 57.471 | 33.333 | 0.00 | 0.00 | 44.83 | 2.44 |
2141 | 2702 | 6.528537 | ACATAGATGCCACATAAGCAAAAA | 57.471 | 33.333 | 0.00 | 0.00 | 44.83 | 1.94 |
2155 | 2716 | 3.806380 | AGCAAAAATGTTGATGTGGCAA | 58.194 | 36.364 | 0.00 | 0.00 | 0.00 | 4.52 |
2157 | 2718 | 3.560896 | GCAAAAATGTTGATGTGGCAAGT | 59.439 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
2159 | 2720 | 5.107375 | GCAAAAATGTTGATGTGGCAAGTAG | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2161 | 2722 | 5.789643 | AAATGTTGATGTGGCAAGTAGTT | 57.210 | 34.783 | 0.00 | 0.00 | 0.00 | 2.24 |
2163 | 2724 | 6.892658 | AATGTTGATGTGGCAAGTAGTTAA | 57.107 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
2164 | 2725 | 7.466746 | AATGTTGATGTGGCAAGTAGTTAAT | 57.533 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2165 | 2726 | 6.252967 | TGTTGATGTGGCAAGTAGTTAATG | 57.747 | 37.500 | 0.00 | 0.00 | 0.00 | 1.90 |
2167 | 2728 | 6.149308 | TGTTGATGTGGCAAGTAGTTAATGAG | 59.851 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2168 | 2729 | 5.185454 | TGATGTGGCAAGTAGTTAATGAGG | 58.815 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2169 | 2730 | 4.901197 | TGTGGCAAGTAGTTAATGAGGA | 57.099 | 40.909 | 0.00 | 0.00 | 0.00 | 3.71 |
2172 | 2733 | 5.112686 | GTGGCAAGTAGTTAATGAGGAGAG | 58.887 | 45.833 | 0.00 | 0.00 | 0.00 | 3.20 |
2174 | 2735 | 5.127845 | TGGCAAGTAGTTAATGAGGAGAGAG | 59.872 | 44.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2175 | 2736 | 5.452636 | GGCAAGTAGTTAATGAGGAGAGAGG | 60.453 | 48.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2176 | 2737 | 5.596845 | CAAGTAGTTAATGAGGAGAGAGGC | 58.403 | 45.833 | 0.00 | 0.00 | 0.00 | 4.70 |
2178 | 2739 | 5.273208 | AGTAGTTAATGAGGAGAGAGGCAA | 58.727 | 41.667 | 0.00 | 0.00 | 0.00 | 4.52 |
2179 | 2740 | 5.721960 | AGTAGTTAATGAGGAGAGAGGCAAA | 59.278 | 40.000 | 0.00 | 0.00 | 0.00 | 3.68 |
2183 | 2744 | 6.613271 | AGTTAATGAGGAGAGAGGCAAATAGA | 59.387 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
2187 | 2748 | 5.519808 | TGAGGAGAGAGGCAAATAGAGTAA | 58.480 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2188 | 2749 | 5.361285 | TGAGGAGAGAGGCAAATAGAGTAAC | 59.639 | 44.000 | 0.00 | 0.00 | 0.00 | 2.50 |
2189 | 2750 | 4.651962 | AGGAGAGAGGCAAATAGAGTAACC | 59.348 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
2190 | 2751 | 4.651962 | GGAGAGAGGCAAATAGAGTAACCT | 59.348 | 45.833 | 0.00 | 0.00 | 0.00 | 3.50 |
2193 | 2754 | 7.015779 | GGAGAGAGGCAAATAGAGTAACCTAAT | 59.984 | 40.741 | 0.00 | 0.00 | 0.00 | 1.73 |
2194 | 2755 | 9.080097 | GAGAGAGGCAAATAGAGTAACCTAATA | 57.920 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
2208 | 2769 | 9.998106 | GAGTAACCTAATATGTTACCATCACAT | 57.002 | 33.333 | 12.73 | 0.00 | 45.83 | 3.21 |
2211 | 2772 | 8.848474 | AACCTAATATGTTACCATCACATAGC | 57.152 | 34.615 | 0.00 | 0.00 | 39.83 | 2.97 |
2212 | 2773 | 7.097192 | ACCTAATATGTTACCATCACATAGCG | 58.903 | 38.462 | 0.00 | 0.00 | 39.83 | 4.26 |
2213 | 2774 | 5.862924 | AATATGTTACCATCACATAGCGC | 57.137 | 39.130 | 0.00 | 0.00 | 39.83 | 5.92 |
2214 | 2775 | 2.979814 | TGTTACCATCACATAGCGCT | 57.020 | 45.000 | 17.26 | 17.26 | 0.00 | 5.92 |
2215 | 2776 | 3.260475 | TGTTACCATCACATAGCGCTT | 57.740 | 42.857 | 18.68 | 0.00 | 0.00 | 4.68 |
2216 | 2777 | 3.605634 | TGTTACCATCACATAGCGCTTT | 58.394 | 40.909 | 18.68 | 4.25 | 0.00 | 3.51 |
2218 | 2779 | 1.668419 | ACCATCACATAGCGCTTTCC | 58.332 | 50.000 | 18.68 | 0.00 | 0.00 | 3.13 |
2222 | 2783 | 3.549423 | CCATCACATAGCGCTTTCCAATG | 60.549 | 47.826 | 18.68 | 15.83 | 0.00 | 2.82 |
2223 | 2784 | 1.401552 | TCACATAGCGCTTTCCAATGC | 59.598 | 47.619 | 18.68 | 0.00 | 0.00 | 3.56 |
2225 | 2786 | 1.818060 | ACATAGCGCTTTCCAATGCAA | 59.182 | 42.857 | 18.68 | 0.00 | 0.00 | 4.08 |
2227 | 2788 | 3.252400 | CATAGCGCTTTCCAATGCAAAA | 58.748 | 40.909 | 18.68 | 0.00 | 0.00 | 2.44 |
2228 | 2789 | 2.460757 | AGCGCTTTCCAATGCAAAAT | 57.539 | 40.000 | 2.64 | 0.00 | 0.00 | 1.82 |
2231 | 2792 | 2.093152 | GCGCTTTCCAATGCAAAATGAG | 59.907 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
2233 | 2794 | 3.365820 | CGCTTTCCAATGCAAAATGAGTC | 59.634 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
2236 | 2797 | 5.574443 | GCTTTCCAATGCAAAATGAGTCTAC | 59.426 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2237 | 2798 | 6.647334 | TTTCCAATGCAAAATGAGTCTACA | 57.353 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
2257 | 2833 | 9.546909 | GTCTACAAGACAATAAATGAACATGTG | 57.453 | 33.333 | 0.00 | 0.00 | 44.45 | 3.21 |
2261 | 2837 | 9.844790 | ACAAGACAATAAATGAACATGTGTATG | 57.155 | 29.630 | 0.00 | 0.00 | 40.24 | 2.39 |
2281 | 2857 | 9.582431 | GTGTATGTTACTACACATATGACACTT | 57.418 | 33.333 | 10.38 | 0.00 | 46.94 | 3.16 |
2282 | 2858 | 9.797556 | TGTATGTTACTACACATATGACACTTC | 57.202 | 33.333 | 10.38 | 0.00 | 40.85 | 3.01 |
2283 | 2859 | 9.245962 | GTATGTTACTACACATATGACACTTCC | 57.754 | 37.037 | 10.38 | 0.00 | 40.85 | 3.46 |
2284 | 2860 | 6.636705 | TGTTACTACACATATGACACTTCCC | 58.363 | 40.000 | 10.38 | 0.00 | 0.00 | 3.97 |
2285 | 2861 | 6.211785 | TGTTACTACACATATGACACTTCCCA | 59.788 | 38.462 | 10.38 | 0.00 | 0.00 | 4.37 |
2286 | 2862 | 5.086104 | ACTACACATATGACACTTCCCAC | 57.914 | 43.478 | 10.38 | 0.00 | 0.00 | 4.61 |
2287 | 2863 | 4.777896 | ACTACACATATGACACTTCCCACT | 59.222 | 41.667 | 10.38 | 0.00 | 0.00 | 4.00 |
2288 | 2864 | 5.955959 | ACTACACATATGACACTTCCCACTA | 59.044 | 40.000 | 10.38 | 0.00 | 0.00 | 2.74 |
2289 | 2865 | 5.957771 | ACACATATGACACTTCCCACTAT | 57.042 | 39.130 | 10.38 | 0.00 | 0.00 | 2.12 |
2290 | 2866 | 7.783119 | ACTACACATATGACACTTCCCACTATA | 59.217 | 37.037 | 10.38 | 0.00 | 0.00 | 1.31 |
2291 | 2867 | 7.432148 | ACACATATGACACTTCCCACTATAA | 57.568 | 36.000 | 10.38 | 0.00 | 0.00 | 0.98 |
2292 | 2868 | 7.500992 | ACACATATGACACTTCCCACTATAAG | 58.499 | 38.462 | 10.38 | 0.00 | 0.00 | 1.73 |
2293 | 2869 | 6.931281 | CACATATGACACTTCCCACTATAAGG | 59.069 | 42.308 | 10.38 | 0.00 | 0.00 | 2.69 |
2295 | 2871 | 3.798515 | TGACACTTCCCACTATAAGGGT | 58.201 | 45.455 | 9.21 | 0.00 | 46.82 | 4.34 |
2296 | 2872 | 4.950361 | TGACACTTCCCACTATAAGGGTA | 58.050 | 43.478 | 9.21 | 0.63 | 46.82 | 3.69 |
2297 | 2873 | 4.960469 | TGACACTTCCCACTATAAGGGTAG | 59.040 | 45.833 | 12.42 | 12.42 | 46.82 | 3.18 |
2303 | 2879 | 7.613551 | CTTCCCACTATAAGGGTAGTAACAT | 57.386 | 40.000 | 9.21 | 0.00 | 46.82 | 2.71 |
2304 | 2880 | 8.716674 | CTTCCCACTATAAGGGTAGTAACATA | 57.283 | 38.462 | 9.21 | 0.00 | 46.82 | 2.29 |
2305 | 2881 | 8.716674 | TTCCCACTATAAGGGTAGTAACATAG | 57.283 | 38.462 | 9.21 | 0.00 | 46.82 | 2.23 |
2306 | 2882 | 8.060727 | TCCCACTATAAGGGTAGTAACATAGA | 57.939 | 38.462 | 9.21 | 0.00 | 46.82 | 1.98 |
2307 | 2883 | 8.168725 | TCCCACTATAAGGGTAGTAACATAGAG | 58.831 | 40.741 | 9.21 | 0.00 | 46.82 | 2.43 |
2308 | 2884 | 7.949006 | CCCACTATAAGGGTAGTAACATAGAGT | 59.051 | 40.741 | 2.34 | 0.00 | 41.61 | 3.24 |
2315 | 2891 | 8.443953 | AAGGGTAGTAACATAGAGTAGTAACG | 57.556 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
2316 | 2892 | 7.569240 | AGGGTAGTAACATAGAGTAGTAACGT | 58.431 | 38.462 | 0.00 | 0.00 | 0.00 | 3.99 |
2317 | 2893 | 8.705594 | AGGGTAGTAACATAGAGTAGTAACGTA | 58.294 | 37.037 | 0.00 | 0.00 | 0.00 | 3.57 |
2318 | 2894 | 9.495572 | GGGTAGTAACATAGAGTAGTAACGTAT | 57.504 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
2320 | 2896 | 9.804547 | GTAGTAACATAGAGTAGTAACGTATGC | 57.195 | 37.037 | 0.00 | 0.00 | 33.77 | 3.14 |
2321 | 2897 | 8.442632 | AGTAACATAGAGTAGTAACGTATGCA | 57.557 | 34.615 | 0.00 | 0.00 | 33.77 | 3.96 |
2322 | 2898 | 9.064706 | AGTAACATAGAGTAGTAACGTATGCAT | 57.935 | 33.333 | 3.79 | 3.79 | 33.77 | 3.96 |
2323 | 2899 | 9.114965 | GTAACATAGAGTAGTAACGTATGCATG | 57.885 | 37.037 | 10.16 | 0.00 | 33.77 | 4.06 |
2324 | 2900 | 7.273320 | ACATAGAGTAGTAACGTATGCATGT | 57.727 | 36.000 | 10.16 | 0.00 | 33.77 | 3.21 |
2325 | 2901 | 7.713750 | ACATAGAGTAGTAACGTATGCATGTT | 58.286 | 34.615 | 10.16 | 8.56 | 37.62 | 2.71 |
2326 | 2902 | 8.843262 | ACATAGAGTAGTAACGTATGCATGTTA | 58.157 | 33.333 | 10.16 | 7.49 | 35.49 | 2.41 |
2336 | 2912 | 9.167239 | GTAACGTATGCATGTTACTACTCTAAG | 57.833 | 37.037 | 23.15 | 2.14 | 46.72 | 2.18 |
2337 | 2913 | 7.330900 | ACGTATGCATGTTACTACTCTAAGT | 57.669 | 36.000 | 10.16 | 0.00 | 0.00 | 2.24 |
2338 | 2914 | 7.769220 | ACGTATGCATGTTACTACTCTAAGTT | 58.231 | 34.615 | 10.16 | 0.00 | 0.00 | 2.66 |
2339 | 2915 | 8.896744 | ACGTATGCATGTTACTACTCTAAGTTA | 58.103 | 33.333 | 10.16 | 0.00 | 0.00 | 2.24 |
2340 | 2916 | 9.167239 | CGTATGCATGTTACTACTCTAAGTTAC | 57.833 | 37.037 | 10.16 | 0.00 | 31.32 | 2.50 |
2343 | 2919 | 7.769220 | TGCATGTTACTACTCTAAGTTACTCC | 58.231 | 38.462 | 0.00 | 0.00 | 31.82 | 3.85 |
2344 | 2920 | 7.147949 | TGCATGTTACTACTCTAAGTTACTCCC | 60.148 | 40.741 | 0.00 | 0.00 | 31.82 | 4.30 |
2345 | 2921 | 7.683945 | GCATGTTACTACTCTAAGTTACTCCCC | 60.684 | 44.444 | 0.00 | 0.00 | 31.82 | 4.81 |
2346 | 2922 | 6.793478 | TGTTACTACTCTAAGTTACTCCCCA | 58.207 | 40.000 | 0.00 | 0.00 | 31.82 | 4.96 |
2347 | 2923 | 6.660949 | TGTTACTACTCTAAGTTACTCCCCAC | 59.339 | 42.308 | 0.00 | 0.00 | 31.82 | 4.61 |
2348 | 2924 | 5.533333 | ACTACTCTAAGTTACTCCCCACT | 57.467 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
2349 | 2925 | 6.649041 | ACTACTCTAAGTTACTCCCCACTA | 57.351 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
2350 | 2926 | 7.223472 | ACTACTCTAAGTTACTCCCCACTAT | 57.777 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2351 | 2927 | 7.061688 | ACTACTCTAAGTTACTCCCCACTATG | 58.938 | 42.308 | 0.00 | 0.00 | 0.00 | 2.23 |
2352 | 2928 | 6.088541 | ACTCTAAGTTACTCCCCACTATGA | 57.911 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
2353 | 2929 | 5.892686 | ACTCTAAGTTACTCCCCACTATGAC | 59.107 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2354 | 2930 | 5.206587 | TCTAAGTTACTCCCCACTATGACC | 58.793 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
2355 | 2931 | 3.484953 | AGTTACTCCCCACTATGACCA | 57.515 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
2356 | 2932 | 3.375699 | AGTTACTCCCCACTATGACCAG | 58.624 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2357 | 2933 | 1.789523 | TACTCCCCACTATGACCAGC | 58.210 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2358 | 2934 | 0.983378 | ACTCCCCACTATGACCAGCC | 60.983 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2369 | 2945 | 6.344500 | CACTATGACCAGCCTAATATCCATC | 58.656 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2510 | 3094 | 6.829811 | TCATGGCTGTCATCAATCTTTCATTA | 59.170 | 34.615 | 0.00 | 0.00 | 32.92 | 1.90 |
2637 | 4689 | 4.876107 | CGTATACAAGCCTTGACTGGATTT | 59.124 | 41.667 | 12.25 | 0.00 | 32.88 | 2.17 |
2695 | 4756 | 1.335132 | TAGTGGCCACTTCCCCGATC | 61.335 | 60.000 | 41.69 | 9.32 | 42.54 | 3.69 |
2696 | 4757 | 2.609299 | TGGCCACTTCCCCGATCA | 60.609 | 61.111 | 0.00 | 0.00 | 0.00 | 2.92 |
2697 | 4758 | 2.000701 | TGGCCACTTCCCCGATCAT | 61.001 | 57.895 | 0.00 | 0.00 | 0.00 | 2.45 |
2698 | 4759 | 1.227383 | GGCCACTTCCCCGATCATT | 59.773 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
2699 | 4760 | 0.472471 | GGCCACTTCCCCGATCATTA | 59.528 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2700 | 4761 | 1.594331 | GCCACTTCCCCGATCATTAC | 58.406 | 55.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2701 | 4762 | 1.865865 | CCACTTCCCCGATCATTACG | 58.134 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2702 | 4763 | 1.411246 | CCACTTCCCCGATCATTACGA | 59.589 | 52.381 | 0.00 | 0.00 | 0.00 | 3.43 |
2703 | 4764 | 2.037251 | CCACTTCCCCGATCATTACGAT | 59.963 | 50.000 | 0.00 | 0.00 | 36.91 | 3.73 |
2817 | 4878 | 6.986817 | TCAAGTTAGTTGATAGGCTAGATTGC | 59.013 | 38.462 | 0.00 | 0.00 | 40.45 | 3.56 |
2856 | 4917 | 8.926092 | ATTTAGTTCTTGATTATAAGAGGGGC | 57.074 | 34.615 | 0.00 | 0.00 | 37.91 | 5.80 |
3017 | 5082 | 5.526846 | TCAAACTCCAAATTGGTTTTGATGC | 59.473 | 36.000 | 25.98 | 0.00 | 46.36 | 3.91 |
3095 | 5163 | 1.206132 | CCATTCCCAGCACGTGTACTA | 59.794 | 52.381 | 18.38 | 0.00 | 0.00 | 1.82 |
3131 | 5199 | 8.768955 | GCTAGGTGATGATAGTAAGTCAAATTG | 58.231 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
3167 | 5240 | 3.409570 | CAGCAGAGACCATATGATTGGG | 58.590 | 50.000 | 3.65 | 0.00 | 41.35 | 4.12 |
3184 | 6168 | 0.972983 | GGGCTCCTCACTACTGCAGA | 60.973 | 60.000 | 23.35 | 2.95 | 0.00 | 4.26 |
3209 | 6194 | 4.156190 | AGGTCTAAGGCGACACATATATCG | 59.844 | 45.833 | 0.00 | 0.00 | 41.32 | 2.92 |
3258 | 6244 | 2.928694 | ACAAAAATCGCAAGCGGTAAG | 58.071 | 42.857 | 14.98 | 1.23 | 40.25 | 2.34 |
3293 | 6279 | 5.068329 | TGTGTGCCAGAAAATGAAATGTGTA | 59.932 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3305 | 6291 | 4.604156 | TGAAATGTGTACATTGGCCCATA | 58.396 | 39.130 | 10.70 | 0.00 | 45.06 | 2.74 |
3310 | 6296 | 4.348486 | TGTGTACATTGGCCCATACATTT | 58.652 | 39.130 | 0.00 | 0.00 | 30.67 | 2.32 |
3389 | 6470 | 1.797964 | GCGTATGCGAACATGTTCAC | 58.202 | 50.000 | 32.06 | 25.25 | 41.33 | 3.18 |
3398 | 6479 | 3.727673 | GCGAACATGTTCACAACGCATAT | 60.728 | 43.478 | 32.06 | 0.00 | 43.18 | 1.78 |
3420 | 6518 | 0.753867 | TCTGTGCGTCACCCTAAACA | 59.246 | 50.000 | 7.38 | 0.00 | 32.73 | 2.83 |
3457 | 6555 | 1.098050 | GTTTGCGATGGCTTGGAGAT | 58.902 | 50.000 | 0.15 | 0.00 | 40.82 | 2.75 |
3466 | 6564 | 0.955428 | GGCTTGGAGATTCGCACACA | 60.955 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3470 | 6568 | 2.183478 | TGGAGATTCGCACACAATGT | 57.817 | 45.000 | 0.00 | 0.00 | 0.00 | 2.71 |
3516 | 6619 | 4.593157 | TGATTTGAAAGTTACACACACGC | 58.407 | 39.130 | 0.00 | 0.00 | 0.00 | 5.34 |
3519 | 6622 | 3.666883 | TGAAAGTTACACACACGCTTG | 57.333 | 42.857 | 0.00 | 0.00 | 0.00 | 4.01 |
3532 | 6635 | 2.210116 | CACGCTTGGTACAGTCAACTT | 58.790 | 47.619 | 0.00 | 0.00 | 42.39 | 2.66 |
3543 | 6646 | 1.677576 | CAGTCAACTTGTGTGTGCCAT | 59.322 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
3544 | 6647 | 2.877786 | CAGTCAACTTGTGTGTGCCATA | 59.122 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
3545 | 6648 | 3.058708 | CAGTCAACTTGTGTGTGCCATAG | 60.059 | 47.826 | 0.00 | 0.00 | 0.00 | 2.23 |
3546 | 6649 | 2.878406 | GTCAACTTGTGTGTGCCATAGT | 59.122 | 45.455 | 0.00 | 0.00 | 0.00 | 2.12 |
3551 | 6654 | 1.877637 | TGTGTGTGCCATAGTGTGAC | 58.122 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3554 | 6657 | 1.416030 | TGTGTGCCATAGTGTGACAGT | 59.584 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
3572 | 6675 | 5.204409 | ACAGTACACACGATTCTTTGGTA | 57.796 | 39.130 | 0.00 | 0.00 | 0.00 | 3.25 |
3577 | 6680 | 5.607119 | ACACACGATTCTTTGGTATGAAC | 57.393 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
3584 | 6687 | 4.829064 | TTCTTTGGTATGAACTGTGTGC | 57.171 | 40.909 | 0.00 | 0.00 | 0.00 | 4.57 |
3585 | 6688 | 3.814625 | TCTTTGGTATGAACTGTGTGCA | 58.185 | 40.909 | 0.00 | 0.00 | 0.00 | 4.57 |
3590 | 6693 | 4.905429 | TGGTATGAACTGTGTGCACTATT | 58.095 | 39.130 | 19.41 | 6.78 | 0.00 | 1.73 |
3596 | 6699 | 0.806868 | CTGTGTGCACTATTGGGCAG | 59.193 | 55.000 | 19.41 | 10.33 | 41.35 | 4.85 |
3599 | 6702 | 0.399833 | TGTGCACTATTGGGCAGACA | 59.600 | 50.000 | 19.41 | 0.00 | 41.35 | 3.41 |
3602 | 6705 | 1.073763 | TGCACTATTGGGCAGACAAGT | 59.926 | 47.619 | 0.00 | 0.00 | 34.58 | 3.16 |
3607 | 6710 | 5.409826 | GCACTATTGGGCAGACAAGTATATC | 59.590 | 44.000 | 0.00 | 0.00 | 33.23 | 1.63 |
3610 | 6713 | 4.746535 | TTGGGCAGACAAGTATATCGAA | 57.253 | 40.909 | 0.00 | 0.00 | 0.00 | 3.71 |
3619 | 6722 | 4.501071 | ACAAGTATATCGAACACACCCAC | 58.499 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
3620 | 6723 | 4.020928 | ACAAGTATATCGAACACACCCACA | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
3634 | 6737 | 0.527565 | CCCACAGGTAAGCAATGTGC | 59.472 | 55.000 | 0.00 | 0.00 | 45.46 | 4.57 |
3688 | 6791 | 9.415544 | CCTTCTTTCCTAAGTTTTTCATTGATG | 57.584 | 33.333 | 0.00 | 0.00 | 32.98 | 3.07 |
3725 | 6828 | 1.644786 | CCATCGTTTCCCGCCACTTC | 61.645 | 60.000 | 0.00 | 0.00 | 36.19 | 3.01 |
3727 | 6830 | 2.814913 | ATCGTTTCCCGCCACTTCCC | 62.815 | 60.000 | 0.00 | 0.00 | 36.19 | 3.97 |
3752 | 6855 | 0.458260 | GTTTTCCGCCACCAGTGTTT | 59.542 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3765 | 6868 | 4.045636 | CCAGTGTTTGGGCATAATAAGC | 57.954 | 45.455 | 0.00 | 0.00 | 43.75 | 3.09 |
3793 | 6896 | 2.573869 | CTCGACACACGGAGGCAT | 59.426 | 61.111 | 0.00 | 0.00 | 42.82 | 4.40 |
3797 | 6900 | 2.048222 | ACACACGGAGGCATGACG | 60.048 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
3814 | 6917 | 0.600255 | ACGAGCGCAACATATAGCCC | 60.600 | 55.000 | 11.47 | 0.00 | 0.00 | 5.19 |
3819 | 6922 | 1.275291 | GCGCAACATATAGCCCCTCTA | 59.725 | 52.381 | 0.30 | 0.00 | 0.00 | 2.43 |
3873 | 6976 | 1.684248 | GCCTCTGCCATCAACATCCTT | 60.684 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
3897 | 7000 | 4.388499 | GAAACGAGCCGGGGCAGA | 62.388 | 66.667 | 12.97 | 0.00 | 44.88 | 4.26 |
3912 | 7015 | 1.436195 | GCAGACGCCACAGTTTGTCA | 61.436 | 55.000 | 0.00 | 0.00 | 33.83 | 3.58 |
3918 | 7021 | 2.041153 | CCACAGTTTGTCAAGGCCC | 58.959 | 57.895 | 0.00 | 0.00 | 0.00 | 5.80 |
3919 | 7022 | 1.463553 | CCACAGTTTGTCAAGGCCCC | 61.464 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
50 | 53 | 7.389803 | TTGTTTCCAGTTCCACATATGTATG | 57.610 | 36.000 | 8.32 | 3.11 | 39.55 | 2.39 |
145 | 395 | 5.065988 | GTCTTAAAAGAGTGGTGTTCTGCAA | 59.934 | 40.000 | 0.00 | 0.00 | 35.32 | 4.08 |
282 | 533 | 5.920193 | AACATCCCAAATCTAACACATGG | 57.080 | 39.130 | 0.00 | 0.00 | 0.00 | 3.66 |
458 | 716 | 7.705214 | ACGAACTATGAGTTAAGTCTATCACC | 58.295 | 38.462 | 11.52 | 0.00 | 38.80 | 4.02 |
464 | 722 | 6.071840 | AGCTTGACGAACTATGAGTTAAGTCT | 60.072 | 38.462 | 19.34 | 0.57 | 41.91 | 3.24 |
465 | 723 | 6.094061 | AGCTTGACGAACTATGAGTTAAGTC | 58.906 | 40.000 | 15.12 | 15.12 | 38.80 | 3.01 |
641 | 902 | 5.250774 | AGAGGGTGTCTTAAATGCCTTTCTA | 59.749 | 40.000 | 0.00 | 0.00 | 27.07 | 2.10 |
751 | 1016 | 3.843027 | ACATCTTCTCTCATCCTTGTGGT | 59.157 | 43.478 | 0.00 | 0.00 | 34.23 | 4.16 |
777 | 1042 | 2.637872 | TGTTACTCAGGTGCTTAGGCTT | 59.362 | 45.455 | 0.00 | 0.00 | 39.59 | 4.35 |
803 | 1068 | 3.686241 | GCTCTAGTTCATGTGCATTGTCA | 59.314 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
845 | 1110 | 7.496591 | TGGTGTTATTCCAACGAATTATACCTC | 59.503 | 37.037 | 14.61 | 0.00 | 43.86 | 3.85 |
861 | 1128 | 4.080863 | ACTCAGGAGGATGTGGTGTTATTC | 60.081 | 45.833 | 0.83 | 0.00 | 0.00 | 1.75 |
865 | 1132 | 1.734655 | ACTCAGGAGGATGTGGTGTT | 58.265 | 50.000 | 0.83 | 0.00 | 0.00 | 3.32 |
944 | 1212 | 4.154737 | GGGAAATTTTTCATGCTCCTTTGC | 59.845 | 41.667 | 5.48 | 0.00 | 38.92 | 3.68 |
964 | 1234 | 6.785466 | TCAGCTACCATACATTTATAGTGGGA | 59.215 | 38.462 | 0.00 | 0.00 | 34.27 | 4.37 |
986 | 1256 | 1.281867 | TGGCCTTGGTATGAGGTTCAG | 59.718 | 52.381 | 3.32 | 0.00 | 36.63 | 3.02 |
1159 | 1430 | 9.909644 | CTTGAGAGTTTTCTTGATTTGATGAAT | 57.090 | 29.630 | 0.00 | 0.00 | 32.53 | 2.57 |
1164 | 1435 | 9.347240 | AGATTCTTGAGAGTTTTCTTGATTTGA | 57.653 | 29.630 | 0.00 | 0.00 | 32.53 | 2.69 |
1247 | 1518 | 6.457799 | GGTGATATGTTTGTACGTGAAATCCC | 60.458 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
1463 | 2000 | 3.114065 | GTCCAATAACGCCTCTAACTCG | 58.886 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1550 | 2091 | 2.562738 | GTTGTAGCAGCCCCTTGATTTT | 59.437 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
1995 | 2549 | 2.979678 | AGTCCTACCACACCATCAAGTT | 59.020 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
2052 | 2609 | 4.574828 | ACAAGTCATGCACGTCTTAAGTTT | 59.425 | 37.500 | 1.63 | 0.00 | 0.00 | 2.66 |
2063 | 2624 | 6.402226 | GGCTTACTTACTAACAAGTCATGCAC | 60.402 | 42.308 | 0.00 | 0.00 | 39.45 | 4.57 |
2077 | 2638 | 4.406003 | CCACTATGACCAGGCTTACTTACT | 59.594 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
2080 | 2641 | 2.505819 | CCCACTATGACCAGGCTTACTT | 59.494 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2081 | 2642 | 2.119495 | CCCACTATGACCAGGCTTACT | 58.881 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
2083 | 2644 | 2.292918 | ACTCCCACTATGACCAGGCTTA | 60.293 | 50.000 | 0.00 | 0.00 | 0.00 | 3.09 |
2084 | 2645 | 1.207791 | CTCCCACTATGACCAGGCTT | 58.792 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2086 | 2647 | 1.789523 | TACTCCCACTATGACCAGGC | 58.210 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2087 | 2648 | 3.104512 | TGTTACTCCCACTATGACCAGG | 58.895 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2088 | 2649 | 5.011125 | CCTATGTTACTCCCACTATGACCAG | 59.989 | 48.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2089 | 2650 | 4.899457 | CCTATGTTACTCCCACTATGACCA | 59.101 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
2090 | 2651 | 4.900054 | ACCTATGTTACTCCCACTATGACC | 59.100 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
2092 | 2653 | 6.919158 | ACTACCTATGTTACTCCCACTATGA | 58.081 | 40.000 | 0.00 | 0.00 | 0.00 | 2.15 |
2093 | 2654 | 8.574737 | GTTACTACCTATGTTACTCCCACTATG | 58.425 | 40.741 | 0.00 | 0.00 | 0.00 | 2.23 |
2095 | 2656 | 7.642186 | TGTTACTACCTATGTTACTCCCACTA | 58.358 | 38.462 | 0.00 | 0.00 | 0.00 | 2.74 |
2096 | 2657 | 6.496743 | TGTTACTACCTATGTTACTCCCACT | 58.503 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2097 | 2658 | 6.780457 | TGTTACTACCTATGTTACTCCCAC | 57.220 | 41.667 | 0.00 | 0.00 | 0.00 | 4.61 |
2101 | 2662 | 9.843334 | GCATCTATGTTACTACCTATGTTACTC | 57.157 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2103 | 2664 | 8.582437 | TGGCATCTATGTTACTACCTATGTTAC | 58.418 | 37.037 | 0.00 | 0.00 | 0.00 | 2.50 |
2104 | 2665 | 8.582437 | GTGGCATCTATGTTACTACCTATGTTA | 58.418 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
2107 | 2668 | 6.993079 | TGTGGCATCTATGTTACTACCTATG | 58.007 | 40.000 | 0.00 | 0.00 | 0.00 | 2.23 |
2109 | 2670 | 8.715190 | TTATGTGGCATCTATGTTACTACCTA | 57.285 | 34.615 | 0.00 | 0.00 | 0.00 | 3.08 |
2110 | 2671 | 7.612065 | TTATGTGGCATCTATGTTACTACCT | 57.388 | 36.000 | 0.00 | 0.00 | 0.00 | 3.08 |
2111 | 2672 | 6.369065 | GCTTATGTGGCATCTATGTTACTACC | 59.631 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
2112 | 2673 | 6.929049 | TGCTTATGTGGCATCTATGTTACTAC | 59.071 | 38.462 | 0.00 | 0.00 | 34.56 | 2.73 |
2113 | 2674 | 7.061566 | TGCTTATGTGGCATCTATGTTACTA | 57.938 | 36.000 | 0.00 | 0.00 | 34.56 | 1.82 |
2114 | 2675 | 5.928976 | TGCTTATGTGGCATCTATGTTACT | 58.071 | 37.500 | 0.00 | 0.00 | 34.56 | 2.24 |
2118 | 2679 | 6.528537 | TTTTTGCTTATGTGGCATCTATGT | 57.471 | 33.333 | 0.00 | 0.00 | 39.54 | 2.29 |
2119 | 2680 | 6.982141 | ACATTTTTGCTTATGTGGCATCTATG | 59.018 | 34.615 | 0.00 | 0.00 | 39.54 | 2.23 |
2121 | 2682 | 6.528537 | ACATTTTTGCTTATGTGGCATCTA | 57.471 | 33.333 | 0.00 | 0.00 | 39.54 | 1.98 |
2122 | 2683 | 5.410355 | ACATTTTTGCTTATGTGGCATCT | 57.590 | 34.783 | 0.00 | 0.00 | 39.54 | 2.90 |
2123 | 2684 | 5.638657 | TCAACATTTTTGCTTATGTGGCATC | 59.361 | 36.000 | 0.00 | 0.00 | 39.54 | 3.91 |
2125 | 2686 | 4.953667 | TCAACATTTTTGCTTATGTGGCA | 58.046 | 34.783 | 0.00 | 0.00 | 35.29 | 4.92 |
2127 | 2688 | 6.823531 | CACATCAACATTTTTGCTTATGTGG | 58.176 | 36.000 | 0.00 | 0.00 | 39.34 | 4.17 |
2128 | 2689 | 6.619018 | GCCACATCAACATTTTTGCTTATGTG | 60.619 | 38.462 | 0.00 | 0.00 | 41.50 | 3.21 |
2129 | 2690 | 5.409214 | GCCACATCAACATTTTTGCTTATGT | 59.591 | 36.000 | 0.00 | 0.00 | 36.58 | 2.29 |
2130 | 2691 | 5.408909 | TGCCACATCAACATTTTTGCTTATG | 59.591 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2131 | 2692 | 5.549347 | TGCCACATCAACATTTTTGCTTAT | 58.451 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
2132 | 2693 | 4.953667 | TGCCACATCAACATTTTTGCTTA | 58.046 | 34.783 | 0.00 | 0.00 | 0.00 | 3.09 |
2134 | 2695 | 3.472283 | TGCCACATCAACATTTTTGCT | 57.528 | 38.095 | 0.00 | 0.00 | 0.00 | 3.91 |
2135 | 2696 | 3.560896 | ACTTGCCACATCAACATTTTTGC | 59.439 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
2136 | 2697 | 5.984926 | ACTACTTGCCACATCAACATTTTTG | 59.015 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2137 | 2698 | 6.160576 | ACTACTTGCCACATCAACATTTTT | 57.839 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
2138 | 2699 | 5.789643 | ACTACTTGCCACATCAACATTTT | 57.210 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
2139 | 2700 | 5.789643 | AACTACTTGCCACATCAACATTT | 57.210 | 34.783 | 0.00 | 0.00 | 0.00 | 2.32 |
2140 | 2701 | 6.892658 | TTAACTACTTGCCACATCAACATT | 57.107 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
2141 | 2702 | 6.658816 | TCATTAACTACTTGCCACATCAACAT | 59.341 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
2155 | 2716 | 4.873010 | TGCCTCTCTCCTCATTAACTACT | 58.127 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2157 | 2718 | 6.814954 | ATTTGCCTCTCTCCTCATTAACTA | 57.185 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
2159 | 2720 | 6.821388 | TCTATTTGCCTCTCTCCTCATTAAC | 58.179 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2161 | 2722 | 6.139671 | ACTCTATTTGCCTCTCTCCTCATTA | 58.860 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2163 | 2724 | 4.555689 | ACTCTATTTGCCTCTCTCCTCAT | 58.444 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
2164 | 2725 | 3.987745 | ACTCTATTTGCCTCTCTCCTCA | 58.012 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
2165 | 2726 | 5.221362 | GGTTACTCTATTTGCCTCTCTCCTC | 60.221 | 48.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2167 | 2728 | 4.651962 | AGGTTACTCTATTTGCCTCTCTCC | 59.348 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
2168 | 2729 | 5.862678 | AGGTTACTCTATTTGCCTCTCTC | 57.137 | 43.478 | 0.00 | 0.00 | 0.00 | 3.20 |
2169 | 2730 | 7.922699 | ATTAGGTTACTCTATTTGCCTCTCT | 57.077 | 36.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2172 | 2733 | 9.780186 | AACATATTAGGTTACTCTATTTGCCTC | 57.220 | 33.333 | 0.00 | 0.00 | 0.00 | 4.70 |
2200 | 2761 | 1.667236 | TGGAAAGCGCTATGTGATGG | 58.333 | 50.000 | 12.05 | 0.00 | 0.00 | 3.51 |
2201 | 2762 | 3.624900 | CATTGGAAAGCGCTATGTGATG | 58.375 | 45.455 | 12.05 | 9.43 | 0.00 | 3.07 |
2203 | 2764 | 1.401552 | GCATTGGAAAGCGCTATGTGA | 59.598 | 47.619 | 12.05 | 0.00 | 0.00 | 3.58 |
2204 | 2765 | 1.132834 | TGCATTGGAAAGCGCTATGTG | 59.867 | 47.619 | 12.05 | 5.56 | 0.00 | 3.21 |
2206 | 2767 | 2.565210 | TTGCATTGGAAAGCGCTATG | 57.435 | 45.000 | 12.05 | 11.94 | 0.00 | 2.23 |
2208 | 2769 | 3.056962 | TCATTTTGCATTGGAAAGCGCTA | 60.057 | 39.130 | 12.05 | 0.00 | 0.00 | 4.26 |
2209 | 2770 | 2.070783 | CATTTTGCATTGGAAAGCGCT | 58.929 | 42.857 | 2.64 | 2.64 | 0.00 | 5.92 |
2210 | 2771 | 2.067766 | TCATTTTGCATTGGAAAGCGC | 58.932 | 42.857 | 0.00 | 0.00 | 0.00 | 5.92 |
2211 | 2772 | 3.319755 | ACTCATTTTGCATTGGAAAGCG | 58.680 | 40.909 | 3.51 | 0.23 | 0.00 | 4.68 |
2212 | 2773 | 4.563061 | AGACTCATTTTGCATTGGAAAGC | 58.437 | 39.130 | 3.51 | 0.00 | 0.00 | 3.51 |
2213 | 2774 | 6.680810 | TGTAGACTCATTTTGCATTGGAAAG | 58.319 | 36.000 | 3.51 | 0.00 | 0.00 | 2.62 |
2214 | 2775 | 6.647334 | TGTAGACTCATTTTGCATTGGAAA | 57.353 | 33.333 | 0.00 | 0.00 | 0.00 | 3.13 |
2215 | 2776 | 6.489700 | TCTTGTAGACTCATTTTGCATTGGAA | 59.510 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
2216 | 2777 | 6.003326 | TCTTGTAGACTCATTTTGCATTGGA | 58.997 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2218 | 2779 | 6.671190 | TGTCTTGTAGACTCATTTTGCATTG | 58.329 | 36.000 | 8.18 | 0.00 | 45.27 | 2.82 |
2222 | 2783 | 9.846248 | ATTTATTGTCTTGTAGACTCATTTTGC | 57.154 | 29.630 | 8.18 | 0.00 | 45.27 | 3.68 |
2227 | 2788 | 9.725019 | TGTTCATTTATTGTCTTGTAGACTCAT | 57.275 | 29.630 | 8.18 | 3.68 | 45.27 | 2.90 |
2228 | 2789 | 9.725019 | ATGTTCATTTATTGTCTTGTAGACTCA | 57.275 | 29.630 | 8.18 | 0.00 | 45.27 | 3.41 |
2231 | 2792 | 9.546909 | CACATGTTCATTTATTGTCTTGTAGAC | 57.453 | 33.333 | 0.00 | 0.00 | 45.26 | 2.59 |
2236 | 2797 | 9.844790 | ACATACACATGTTCATTTATTGTCTTG | 57.155 | 29.630 | 0.00 | 0.00 | 42.98 | 3.02 |
2257 | 2833 | 9.245962 | GGAAGTGTCATATGTGTAGTAACATAC | 57.754 | 37.037 | 1.90 | 0.00 | 43.83 | 2.39 |
2261 | 2837 | 6.534079 | GTGGGAAGTGTCATATGTGTAGTAAC | 59.466 | 42.308 | 1.90 | 0.00 | 0.00 | 2.50 |
2262 | 2838 | 6.439375 | AGTGGGAAGTGTCATATGTGTAGTAA | 59.561 | 38.462 | 1.90 | 0.00 | 0.00 | 2.24 |
2263 | 2839 | 5.955959 | AGTGGGAAGTGTCATATGTGTAGTA | 59.044 | 40.000 | 1.90 | 0.00 | 0.00 | 1.82 |
2264 | 2840 | 4.777896 | AGTGGGAAGTGTCATATGTGTAGT | 59.222 | 41.667 | 1.90 | 0.00 | 0.00 | 2.73 |
2265 | 2841 | 5.344743 | AGTGGGAAGTGTCATATGTGTAG | 57.655 | 43.478 | 1.90 | 0.00 | 0.00 | 2.74 |
2266 | 2842 | 8.541899 | TTATAGTGGGAAGTGTCATATGTGTA | 57.458 | 34.615 | 1.90 | 0.00 | 0.00 | 2.90 |
2267 | 2843 | 5.957771 | ATAGTGGGAAGTGTCATATGTGT | 57.042 | 39.130 | 1.90 | 0.00 | 0.00 | 3.72 |
2268 | 2844 | 6.931281 | CCTTATAGTGGGAAGTGTCATATGTG | 59.069 | 42.308 | 1.90 | 0.00 | 0.00 | 3.21 |
2269 | 2845 | 7.067496 | CCTTATAGTGGGAAGTGTCATATGT | 57.933 | 40.000 | 1.90 | 0.00 | 0.00 | 2.29 |
2283 | 2859 | 8.937207 | ACTCTATGTTACTACCCTTATAGTGG | 57.063 | 38.462 | 0.00 | 0.00 | 36.09 | 4.00 |
2289 | 2865 | 9.547753 | CGTTACTACTCTATGTTACTACCCTTA | 57.452 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
2290 | 2866 | 8.049721 | ACGTTACTACTCTATGTTACTACCCTT | 58.950 | 37.037 | 0.00 | 0.00 | 0.00 | 3.95 |
2291 | 2867 | 7.569240 | ACGTTACTACTCTATGTTACTACCCT | 58.431 | 38.462 | 0.00 | 0.00 | 0.00 | 4.34 |
2292 | 2868 | 7.793927 | ACGTTACTACTCTATGTTACTACCC | 57.206 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2294 | 2870 | 9.804547 | GCATACGTTACTACTCTATGTTACTAC | 57.195 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
2295 | 2871 | 9.546428 | TGCATACGTTACTACTCTATGTTACTA | 57.454 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2296 | 2872 | 8.442632 | TGCATACGTTACTACTCTATGTTACT | 57.557 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
2297 | 2873 | 9.114965 | CATGCATACGTTACTACTCTATGTTAC | 57.885 | 37.037 | 0.00 | 0.00 | 0.00 | 2.50 |
2298 | 2874 | 8.843262 | ACATGCATACGTTACTACTCTATGTTA | 58.157 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2299 | 2875 | 7.713750 | ACATGCATACGTTACTACTCTATGTT | 58.286 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
2300 | 2876 | 7.273320 | ACATGCATACGTTACTACTCTATGT | 57.727 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2301 | 2877 | 9.114965 | GTAACATGCATACGTTACTACTCTATG | 57.885 | 37.037 | 23.15 | 2.51 | 42.62 | 2.23 |
2310 | 2886 | 9.167239 | CTTAGAGTAGTAACATGCATACGTTAC | 57.833 | 37.037 | 23.05 | 23.05 | 45.03 | 2.50 |
2311 | 2887 | 8.896744 | ACTTAGAGTAGTAACATGCATACGTTA | 58.103 | 33.333 | 0.00 | 1.86 | 0.00 | 3.18 |
2312 | 2888 | 7.769220 | ACTTAGAGTAGTAACATGCATACGTT | 58.231 | 34.615 | 0.00 | 2.97 | 0.00 | 3.99 |
2313 | 2889 | 7.330900 | ACTTAGAGTAGTAACATGCATACGT | 57.669 | 36.000 | 0.00 | 0.00 | 0.00 | 3.57 |
2314 | 2890 | 9.167239 | GTAACTTAGAGTAGTAACATGCATACG | 57.833 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
2317 | 2893 | 8.414778 | GGAGTAACTTAGAGTAGTAACATGCAT | 58.585 | 37.037 | 0.00 | 0.00 | 0.00 | 3.96 |
2318 | 2894 | 7.147949 | GGGAGTAACTTAGAGTAGTAACATGCA | 60.148 | 40.741 | 0.00 | 0.00 | 0.00 | 3.96 |
2319 | 2895 | 7.201835 | GGGAGTAACTTAGAGTAGTAACATGC | 58.798 | 42.308 | 0.00 | 0.00 | 0.00 | 4.06 |
2320 | 2896 | 7.341256 | TGGGGAGTAACTTAGAGTAGTAACATG | 59.659 | 40.741 | 0.00 | 0.00 | 0.00 | 3.21 |
2321 | 2897 | 7.341512 | GTGGGGAGTAACTTAGAGTAGTAACAT | 59.658 | 40.741 | 0.00 | 0.00 | 0.00 | 2.71 |
2322 | 2898 | 6.660949 | GTGGGGAGTAACTTAGAGTAGTAACA | 59.339 | 42.308 | 0.00 | 0.00 | 0.00 | 2.41 |
2323 | 2899 | 6.889177 | AGTGGGGAGTAACTTAGAGTAGTAAC | 59.111 | 42.308 | 0.00 | 0.00 | 0.00 | 2.50 |
2324 | 2900 | 7.037342 | AGTGGGGAGTAACTTAGAGTAGTAA | 57.963 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2325 | 2901 | 6.649041 | AGTGGGGAGTAACTTAGAGTAGTA | 57.351 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
2326 | 2902 | 5.533333 | AGTGGGGAGTAACTTAGAGTAGT | 57.467 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
2327 | 2903 | 7.229106 | GTCATAGTGGGGAGTAACTTAGAGTAG | 59.771 | 44.444 | 0.00 | 0.00 | 0.00 | 2.57 |
2328 | 2904 | 7.059156 | GTCATAGTGGGGAGTAACTTAGAGTA | 58.941 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
2329 | 2905 | 5.892686 | GTCATAGTGGGGAGTAACTTAGAGT | 59.107 | 44.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2330 | 2906 | 5.302313 | GGTCATAGTGGGGAGTAACTTAGAG | 59.698 | 48.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2331 | 2907 | 5.206587 | GGTCATAGTGGGGAGTAACTTAGA | 58.793 | 45.833 | 0.00 | 0.00 | 0.00 | 2.10 |
2332 | 2908 | 4.960469 | TGGTCATAGTGGGGAGTAACTTAG | 59.040 | 45.833 | 0.00 | 0.00 | 0.00 | 2.18 |
2333 | 2909 | 4.950361 | TGGTCATAGTGGGGAGTAACTTA | 58.050 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2334 | 2910 | 3.775316 | CTGGTCATAGTGGGGAGTAACTT | 59.225 | 47.826 | 0.00 | 0.00 | 0.00 | 2.66 |
2335 | 2911 | 3.375699 | CTGGTCATAGTGGGGAGTAACT | 58.624 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2336 | 2912 | 2.158943 | GCTGGTCATAGTGGGGAGTAAC | 60.159 | 54.545 | 0.00 | 0.00 | 0.00 | 2.50 |
2337 | 2913 | 2.116238 | GCTGGTCATAGTGGGGAGTAA | 58.884 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
2338 | 2914 | 1.691482 | GGCTGGTCATAGTGGGGAGTA | 60.691 | 57.143 | 0.00 | 0.00 | 0.00 | 2.59 |
2339 | 2915 | 0.983378 | GGCTGGTCATAGTGGGGAGT | 60.983 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2340 | 2916 | 0.692419 | AGGCTGGTCATAGTGGGGAG | 60.692 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2341 | 2917 | 0.639943 | TAGGCTGGTCATAGTGGGGA | 59.360 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
2342 | 2918 | 1.507140 | TTAGGCTGGTCATAGTGGGG | 58.493 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
2343 | 2919 | 4.080863 | GGATATTAGGCTGGTCATAGTGGG | 60.081 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2344 | 2920 | 4.532126 | TGGATATTAGGCTGGTCATAGTGG | 59.468 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
2345 | 2921 | 5.745312 | TGGATATTAGGCTGGTCATAGTG | 57.255 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
2346 | 2922 | 5.127845 | CGATGGATATTAGGCTGGTCATAGT | 59.872 | 44.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2347 | 2923 | 5.127845 | ACGATGGATATTAGGCTGGTCATAG | 59.872 | 44.000 | 0.00 | 0.00 | 0.00 | 2.23 |
2348 | 2924 | 5.023452 | ACGATGGATATTAGGCTGGTCATA | 58.977 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
2349 | 2925 | 3.840666 | ACGATGGATATTAGGCTGGTCAT | 59.159 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
2350 | 2926 | 3.239449 | ACGATGGATATTAGGCTGGTCA | 58.761 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
2351 | 2927 | 3.963428 | ACGATGGATATTAGGCTGGTC | 57.037 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
2352 | 2928 | 6.374417 | AATAACGATGGATATTAGGCTGGT | 57.626 | 37.500 | 0.00 | 0.00 | 0.00 | 4.00 |
2353 | 2929 | 8.964476 | ATAAATAACGATGGATATTAGGCTGG | 57.036 | 34.615 | 0.00 | 0.00 | 0.00 | 4.85 |
2510 | 3094 | 4.837093 | TCGGAATTTGGATCCTGTAGTT | 57.163 | 40.909 | 14.23 | 1.60 | 34.66 | 2.24 |
2637 | 4689 | 6.631971 | TGTGCATTCTTCAAGTAATTCACA | 57.368 | 33.333 | 9.36 | 9.36 | 37.05 | 3.58 |
2697 | 4758 | 8.551205 | GCAGATTTCTTATTGTCATGATCGTAA | 58.449 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2698 | 4759 | 7.096065 | CGCAGATTTCTTATTGTCATGATCGTA | 60.096 | 37.037 | 0.00 | 0.00 | 0.00 | 3.43 |
2699 | 4760 | 6.292542 | CGCAGATTTCTTATTGTCATGATCGT | 60.293 | 38.462 | 0.00 | 0.00 | 0.00 | 3.73 |
2700 | 4761 | 6.069563 | CGCAGATTTCTTATTGTCATGATCG | 58.930 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2701 | 4762 | 6.952743 | ACGCAGATTTCTTATTGTCATGATC | 58.047 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2702 | 4763 | 6.932356 | ACGCAGATTTCTTATTGTCATGAT | 57.068 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
2703 | 4764 | 7.041721 | AGTACGCAGATTTCTTATTGTCATGA | 58.958 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
2856 | 4917 | 6.826668 | TGGTCCACCATAGTTGAACATATAG | 58.173 | 40.000 | 0.00 | 0.00 | 42.01 | 1.31 |
2946 | 5011 | 7.822822 | ACAGTCCTTGACCATTAAGTAACATAC | 59.177 | 37.037 | 0.00 | 0.00 | 32.18 | 2.39 |
2947 | 5012 | 7.913789 | ACAGTCCTTGACCATTAAGTAACATA | 58.086 | 34.615 | 0.00 | 0.00 | 32.18 | 2.29 |
2948 | 5013 | 6.779860 | ACAGTCCTTGACCATTAAGTAACAT | 58.220 | 36.000 | 0.00 | 0.00 | 32.18 | 2.71 |
2966 | 5031 | 9.586435 | CAAAATAAATGAAATAAGGGACAGTCC | 57.414 | 33.333 | 11.70 | 11.70 | 35.23 | 3.85 |
3017 | 5082 | 4.594920 | ACTAGGGACCATGGTGATAATCAG | 59.405 | 45.833 | 25.52 | 11.89 | 0.00 | 2.90 |
3095 | 5163 | 1.474478 | CATCACCTAGCTCGTGTCACT | 59.526 | 52.381 | 12.27 | 0.00 | 32.86 | 3.41 |
3131 | 5199 | 0.675837 | TGCTGCTGTGAGCCTTCATC | 60.676 | 55.000 | 0.00 | 0.00 | 41.51 | 2.92 |
3167 | 5240 | 2.615869 | CTTTCTGCAGTAGTGAGGAGC | 58.384 | 52.381 | 14.67 | 0.00 | 0.00 | 4.70 |
3169 | 5242 | 2.563179 | GACCTTTCTGCAGTAGTGAGGA | 59.437 | 50.000 | 14.67 | 0.00 | 35.20 | 3.71 |
3184 | 6168 | 4.755266 | ATATGTGTCGCCTTAGACCTTT | 57.245 | 40.909 | 0.00 | 0.00 | 40.26 | 3.11 |
3209 | 6194 | 0.951558 | AGTTTGGTCGATTGGTGTGC | 59.048 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
3258 | 6244 | 8.863049 | CATTTTCTGGCACACAAGTATATTTTC | 58.137 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
3293 | 6279 | 1.485895 | GCCAAATGTATGGGCCAATGT | 59.514 | 47.619 | 11.89 | 0.00 | 41.90 | 2.71 |
3305 | 6291 | 3.066291 | TCACCTAATCGTGCCAAATGT | 57.934 | 42.857 | 0.00 | 0.00 | 33.57 | 2.71 |
3310 | 6296 | 2.499693 | TCTTCATCACCTAATCGTGCCA | 59.500 | 45.455 | 0.00 | 0.00 | 33.57 | 4.92 |
3389 | 6470 | 3.903876 | GCACAGACCATATGCGTTG | 57.096 | 52.632 | 0.00 | 0.00 | 0.00 | 4.10 |
3398 | 6479 | 1.116536 | TTAGGGTGACGCACAGACCA | 61.117 | 55.000 | 1.61 | 0.00 | 35.86 | 4.02 |
3420 | 6518 | 6.036517 | TCGCAAACATTTTGTGCTTGTAAATT | 59.963 | 30.769 | 7.22 | 0.00 | 36.50 | 1.82 |
3466 | 6564 | 5.120674 | CACACGAGTATTCATGTCACACATT | 59.879 | 40.000 | 0.00 | 0.00 | 36.53 | 2.71 |
3470 | 6568 | 3.987220 | CACACACGAGTATTCATGTCACA | 59.013 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
3471 | 6569 | 4.234574 | TCACACACGAGTATTCATGTCAC | 58.765 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
3472 | 6570 | 4.513198 | TCACACACGAGTATTCATGTCA | 57.487 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
3473 | 6571 | 5.102313 | TCATCACACACGAGTATTCATGTC | 58.898 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
3474 | 6572 | 5.072040 | TCATCACACACGAGTATTCATGT | 57.928 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
3516 | 6619 | 3.938963 | ACACACAAGTTGACTGTACCAAG | 59.061 | 43.478 | 10.54 | 0.00 | 0.00 | 3.61 |
3519 | 6622 | 2.031683 | GCACACACAAGTTGACTGTACC | 59.968 | 50.000 | 10.54 | 1.81 | 0.00 | 3.34 |
3546 | 6649 | 4.316205 | AAGAATCGTGTGTACTGTCACA | 57.684 | 40.909 | 13.49 | 8.37 | 44.54 | 3.58 |
3551 | 6654 | 5.867174 | TCATACCAAAGAATCGTGTGTACTG | 59.133 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3554 | 6657 | 6.367695 | CAGTTCATACCAAAGAATCGTGTGTA | 59.632 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
3558 | 6661 | 5.179368 | ACACAGTTCATACCAAAGAATCGTG | 59.821 | 40.000 | 0.00 | 0.00 | 36.08 | 4.35 |
3572 | 6675 | 3.084039 | CCCAATAGTGCACACAGTTCAT | 58.916 | 45.455 | 21.04 | 0.00 | 0.00 | 2.57 |
3577 | 6680 | 0.806868 | CTGCCCAATAGTGCACACAG | 59.193 | 55.000 | 21.04 | 10.18 | 33.17 | 3.66 |
3584 | 6687 | 5.635280 | CGATATACTTGTCTGCCCAATAGTG | 59.365 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3585 | 6688 | 5.538813 | TCGATATACTTGTCTGCCCAATAGT | 59.461 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3590 | 6693 | 3.449377 | TGTTCGATATACTTGTCTGCCCA | 59.551 | 43.478 | 0.00 | 0.00 | 0.00 | 5.36 |
3596 | 6699 | 4.565564 | GTGGGTGTGTTCGATATACTTGTC | 59.434 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
3599 | 6702 | 4.382685 | CCTGTGGGTGTGTTCGATATACTT | 60.383 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
3602 | 6705 | 3.101437 | ACCTGTGGGTGTGTTCGATATA | 58.899 | 45.455 | 0.00 | 0.00 | 45.43 | 0.86 |
3607 | 6710 | 1.508632 | CTTACCTGTGGGTGTGTTCG | 58.491 | 55.000 | 0.00 | 0.00 | 46.75 | 3.95 |
3610 | 6713 | 0.548989 | TTGCTTACCTGTGGGTGTGT | 59.451 | 50.000 | 0.00 | 0.00 | 46.75 | 3.72 |
3619 | 6722 | 1.226101 | CGCGCACATTGCTTACCTG | 60.226 | 57.895 | 8.75 | 0.00 | 42.25 | 4.00 |
3620 | 6723 | 3.039202 | GCGCGCACATTGCTTACCT | 62.039 | 57.895 | 29.10 | 0.00 | 42.25 | 3.08 |
3688 | 6791 | 1.342174 | TGGCGTATTCGGATAACTCCC | 59.658 | 52.381 | 0.00 | 0.00 | 38.45 | 4.30 |
3719 | 6822 | 2.171003 | GGAAAACTGATGGGGAAGTGG | 58.829 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
3725 | 6828 | 1.304052 | TGGCGGAAAACTGATGGGG | 60.304 | 57.895 | 0.00 | 0.00 | 0.00 | 4.96 |
3727 | 6830 | 0.893270 | TGGTGGCGGAAAACTGATGG | 60.893 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3765 | 6868 | 3.449227 | TGTCGAGCCGTGCCTAGG | 61.449 | 66.667 | 3.67 | 3.67 | 0.00 | 3.02 |
3766 | 6869 | 2.202623 | GTGTCGAGCCGTGCCTAG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 3.02 |
3767 | 6870 | 2.986979 | TGTGTCGAGCCGTGCCTA | 60.987 | 61.111 | 0.00 | 0.00 | 0.00 | 3.93 |
3768 | 6871 | 4.664677 | GTGTGTCGAGCCGTGCCT | 62.665 | 66.667 | 0.00 | 0.00 | 0.00 | 4.75 |
3772 | 6875 | 4.039357 | CTCCGTGTGTCGAGCCGT | 62.039 | 66.667 | 0.00 | 0.00 | 42.86 | 5.68 |
3773 | 6876 | 4.778415 | CCTCCGTGTGTCGAGCCG | 62.778 | 72.222 | 0.00 | 0.00 | 42.86 | 5.52 |
3793 | 6896 | 1.487482 | GCTATATGTTGCGCTCGTCA | 58.513 | 50.000 | 9.73 | 2.77 | 0.00 | 4.35 |
3797 | 6900 | 0.035458 | AGGGGCTATATGTTGCGCTC | 59.965 | 55.000 | 9.73 | 2.14 | 41.08 | 5.03 |
3814 | 6917 | 3.181483 | GGCATGCTTGAAAATGGTAGAGG | 60.181 | 47.826 | 18.92 | 0.00 | 0.00 | 3.69 |
3819 | 6922 | 2.550639 | GGTTGGCATGCTTGAAAATGGT | 60.551 | 45.455 | 18.92 | 0.00 | 0.00 | 3.55 |
3851 | 6954 | 0.745845 | GATGTTGATGGCAGAGGCGT | 60.746 | 55.000 | 0.00 | 0.00 | 42.47 | 5.68 |
3873 | 6976 | 2.257371 | CGGCTCGTTTCCTCGTCA | 59.743 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
3897 | 7000 | 1.724582 | GCCTTGACAAACTGTGGCGT | 61.725 | 55.000 | 0.15 | 0.00 | 38.59 | 5.68 |
3899 | 7002 | 1.363807 | GGCCTTGACAAACTGTGGC | 59.636 | 57.895 | 6.81 | 6.81 | 39.61 | 5.01 |
3903 | 7006 | 2.268076 | CCGGGGCCTTGACAAACTG | 61.268 | 63.158 | 0.84 | 0.00 | 0.00 | 3.16 |
3904 | 7007 | 2.115266 | CCGGGGCCTTGACAAACT | 59.885 | 61.111 | 0.84 | 0.00 | 0.00 | 2.66 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.