Multiple sequence alignment - TraesCS1B01G005100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G005100 chr1B 100.000 6113 0 0 619 6731 3176538 3170426 0.000000e+00 11289
1 TraesCS1B01G005100 chr1B 100.000 364 0 0 1 364 3177156 3176793 0.000000e+00 673
2 TraesCS1B01G005100 chr6A 96.331 3707 109 13 3048 6731 27212862 27216564 0.000000e+00 6067
3 TraesCS1B01G005100 chr6A 97.223 3493 51 7 620 4110 573127283 573123835 0.000000e+00 5871
4 TraesCS1B01G005100 chr6A 97.207 2435 61 3 620 3052 27201726 27204155 0.000000e+00 4113
5 TraesCS1B01G005100 chr6A 95.879 364 14 1 1 364 27201528 27201890 7.520000e-164 588
6 TraesCS1B01G005100 chr6A 92.351 353 24 3 8 358 573127475 573127124 3.620000e-137 499
7 TraesCS1B01G005100 chr6A 91.922 359 24 5 8 364 27201628 27201983 1.300000e-136 497
8 TraesCS1B01G005100 chr6A 96.751 277 8 1 1 277 27200555 27200830 1.710000e-125 460
9 TraesCS1B01G005100 chr6A 94.425 287 15 1 620 905 573127469 573127183 2.230000e-119 440
10 TraesCS1B01G005100 chr6A 91.304 322 22 6 47 364 573127530 573127211 1.040000e-117 435
11 TraesCS1B01G005100 chr6A 95.255 274 12 1 632 905 27201554 27201826 3.730000e-117 433
12 TraesCS1B01G005100 chr6A 92.079 303 20 4 620 921 27201634 27201933 2.240000e-114 424
13 TraesCS1B01G005100 chr6A 96.047 253 9 1 632 884 27200581 27200832 1.750000e-110 411
14 TraesCS1B01G005100 chr5B 97.882 3494 54 6 620 4110 551418321 551421797 0.000000e+00 6024
15 TraesCS1B01G005100 chr5B 97.802 364 8 0 1 364 551417774 551418137 4.430000e-176 628
16 TraesCS1B01G005100 chr5B 76.304 882 158 32 5461 6317 170640327 170639472 2.240000e-114 424
17 TraesCS1B01G005100 chr4B 97.987 3478 49 6 637 4110 347577417 347573957 0.000000e+00 6015
18 TraesCS1B01G005100 chr4B 98.305 354 6 0 1 354 347578024 347577671 7.410000e-174 621
19 TraesCS1B01G005100 chr4B 93.818 275 15 2 632 905 347577998 347577725 4.860000e-111 412
20 TraesCS1B01G005100 chr7A 97.624 3494 62 7 620 4110 59813798 59810323 0.000000e+00 5973
21 TraesCS1B01G005100 chr7A 76.853 2834 491 114 1697 4433 119519419 119522184 0.000000e+00 1447
22 TraesCS1B01G005100 chr7A 97.619 336 8 0 1 336 59814465 59814130 1.630000e-160 577
23 TraesCS1B01G005100 chr7A 86.139 101 13 1 265 364 59814480 59814380 2.570000e-19 108
24 TraesCS1B01G005100 chr2B 90.856 3565 244 35 1572 5103 637753912 637750397 0.000000e+00 4702
25 TraesCS1B01G005100 chr2B 89.451 3479 289 40 1644 5103 733836575 733833156 0.000000e+00 4320
26 TraesCS1B01G005100 chr2B 87.975 1630 144 31 5121 6726 637724821 637723220 0.000000e+00 1877
27 TraesCS1B01G005100 chr2B 89.731 1266 94 25 5103 6344 733833106 733831853 0.000000e+00 1585
28 TraesCS1B01G005100 chr2B 91.379 464 30 5 910 1373 637754379 637753926 1.590000e-175 627
29 TraesCS1B01G005100 chr2B 89.079 467 42 6 910 1373 733837543 733837083 7.570000e-159 571
30 TraesCS1B01G005100 chr5A 97.049 1220 29 4 1008 2225 20131549 20130335 0.000000e+00 2047
31 TraesCS1B01G005100 chr5A 90.909 385 19 5 620 1004 20131978 20131610 2.800000e-138 503
32 TraesCS1B01G005100 chr5A 91.429 315 20 3 50 364 20132122 20131815 6.240000e-115 425
33 TraesCS1B01G005100 chr5A 82.869 251 31 9 1630 1873 105460361 105460606 1.470000e-51 215
34 TraesCS1B01G005100 chr4D 77.928 3475 571 141 1723 5097 422229603 422226225 0.000000e+00 1988
35 TraesCS1B01G005100 chr7D 76.958 3537 608 136 1704 5118 587277755 587281206 0.000000e+00 1825
36 TraesCS1B01G005100 chr1D 76.736 3542 620 135 1704 5118 431412727 431416191 0.000000e+00 1788
37 TraesCS1B01G005100 chr4A 79.832 595 93 20 908 1495 590317144 590316570 6.280000e-110 409


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G005100 chr1B 3170426 3177156 6730 True 5981.000000 11289 100.000000 1 6731 2 chr1B.!!$R1 6730
1 TraesCS1B01G005100 chr6A 27212862 27216564 3702 False 6067.000000 6067 96.331000 3048 6731 1 chr6A.!!$F1 3683
2 TraesCS1B01G005100 chr6A 573123835 573127530 3695 True 1811.250000 5871 93.825750 8 4110 4 chr6A.!!$R1 4102
3 TraesCS1B01G005100 chr6A 27200555 27204155 3600 False 989.428571 4113 95.020000 1 3052 7 chr6A.!!$F2 3051
4 TraesCS1B01G005100 chr5B 551417774 551421797 4023 False 3326.000000 6024 97.842000 1 4110 2 chr5B.!!$F1 4109
5 TraesCS1B01G005100 chr5B 170639472 170640327 855 True 424.000000 424 76.304000 5461 6317 1 chr5B.!!$R1 856
6 TraesCS1B01G005100 chr4B 347573957 347578024 4067 True 2349.333333 6015 96.703333 1 4110 3 chr4B.!!$R1 4109
7 TraesCS1B01G005100 chr7A 59810323 59814480 4157 True 2219.333333 5973 93.794000 1 4110 3 chr7A.!!$R1 4109
8 TraesCS1B01G005100 chr7A 119519419 119522184 2765 False 1447.000000 1447 76.853000 1697 4433 1 chr7A.!!$F1 2736
9 TraesCS1B01G005100 chr2B 637750397 637754379 3982 True 2664.500000 4702 91.117500 910 5103 2 chr2B.!!$R2 4193
10 TraesCS1B01G005100 chr2B 733831853 733837543 5690 True 2158.666667 4320 89.420333 910 6344 3 chr2B.!!$R3 5434
11 TraesCS1B01G005100 chr2B 637723220 637724821 1601 True 1877.000000 1877 87.975000 5121 6726 1 chr2B.!!$R1 1605
12 TraesCS1B01G005100 chr5A 20130335 20132122 1787 True 991.666667 2047 93.129000 50 2225 3 chr5A.!!$R1 2175
13 TraesCS1B01G005100 chr4D 422226225 422229603 3378 True 1988.000000 1988 77.928000 1723 5097 1 chr4D.!!$R1 3374
14 TraesCS1B01G005100 chr7D 587277755 587281206 3451 False 1825.000000 1825 76.958000 1704 5118 1 chr7D.!!$F1 3414
15 TraesCS1B01G005100 chr1D 431412727 431416191 3464 False 1788.000000 1788 76.736000 1704 5118 1 chr1D.!!$F1 3414
16 TraesCS1B01G005100 chr4A 590316570 590317144 574 True 409.000000 409 79.832000 908 1495 1 chr4A.!!$R1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 1083 4.700213 AGTGGATTTTCCTGTGTAATTCGG 59.300 41.667 0.00 0.0 37.46 4.30 F
1859 3455 1.352017 CCAGACATATGGCATGGGCTA 59.648 52.381 12.11 0.0 40.87 3.93 F
2524 4139 0.842030 TGTCCCTGATGTCAAGCCCT 60.842 55.000 0.00 0.0 0.00 5.19 F
3083 4750 2.442236 AATGCCAAATCTGTCCCGAT 57.558 45.000 0.00 0.0 0.00 4.18 F
4249 6007 0.254747 TTCGCTGGATCCCCGAAATT 59.745 50.000 25.87 0.0 37.95 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 3483 1.486726 CACTTCACTAGCCTAAGGGGG 59.513 57.143 0.00 0.0 35.12 5.40 R
3286 4961 2.625790 ACAGTCTCACACTTCCTCTCAC 59.374 50.000 0.00 0.0 30.26 3.51 R
3946 5674 2.031120 TGAGCAAAAGTGGGTCTTTGG 58.969 47.619 0.00 0.0 44.50 3.28 R
5021 6885 2.096013 GGTGACGCCTTTCTTGATTAGC 59.904 50.000 0.00 0.0 0.00 3.09 R
5975 7924 3.461378 TGCTGAGGTACACTAGGGTAA 57.539 47.619 6.38 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
268 1072 7.947890 TCCAGTGTAATTTTAGTGGATTTTCCT 59.052 33.333 11.95 0.00 40.54 3.36
279 1083 4.700213 AGTGGATTTTCCTGTGTAATTCGG 59.300 41.667 0.00 0.00 37.46 4.30
760 1846 5.393027 GCAGTGTACCCATTTAATTCCAGTG 60.393 44.000 0.00 0.00 0.00 3.66
761 1847 5.710099 CAGTGTACCCATTTAATTCCAGTGT 59.290 40.000 0.00 0.00 0.00 3.55
762 1848 6.882140 CAGTGTACCCATTTAATTCCAGTGTA 59.118 38.462 0.00 0.00 0.00 2.90
763 1849 7.392113 CAGTGTACCCATTTAATTCCAGTGTAA 59.608 37.037 0.00 0.00 0.00 2.41
764 1850 8.113462 AGTGTACCCATTTAATTCCAGTGTAAT 58.887 33.333 0.00 0.00 0.00 1.89
765 1851 8.745590 GTGTACCCATTTAATTCCAGTGTAATT 58.254 33.333 0.00 0.00 0.00 1.40
766 1852 9.315363 TGTACCCATTTAATTCCAGTGTAATTT 57.685 29.630 0.00 0.00 0.00 1.82
1381 2552 6.043938 GGAATGTGGTTAGTTCCCCATATCTA 59.956 42.308 0.00 0.00 36.29 1.98
1739 3335 4.702612 TGTTGTTTTGTAGAGGCAGAAACA 59.297 37.500 0.00 0.00 38.14 2.83
1747 3343 6.360370 TGTAGAGGCAGAAACAATCTACTT 57.640 37.500 10.88 0.00 41.77 2.24
1762 3358 7.238710 ACAATCTACTTATTTCCCCACTTGTT 58.761 34.615 0.00 0.00 0.00 2.83
1859 3455 1.352017 CCAGACATATGGCATGGGCTA 59.648 52.381 12.11 0.00 40.87 3.93
1887 3483 3.397849 AACTTTGTTAGGACCGAGGTC 57.602 47.619 13.61 13.61 43.87 3.85
1990 3586 6.298361 CCAATGACCAAGTATGATATCCACA 58.702 40.000 0.00 0.00 0.00 4.17
2254 3851 7.148018 TGCATATTTTCAGGGATTGTTCTTCTC 60.148 37.037 0.00 0.00 0.00 2.87
2269 3866 6.233434 TGTTCTTCTCTGTGCAACTATGATT 58.767 36.000 0.00 0.00 38.04 2.57
2381 3978 3.317993 GGTGGTTGTCACTATGCTTTTGT 59.682 43.478 0.00 0.00 45.38 2.83
2397 3994 7.618502 TGCTTTTGTTGTAAGTCTTGTTCTA 57.381 32.000 0.00 0.00 0.00 2.10
2398 3995 8.220755 TGCTTTTGTTGTAAGTCTTGTTCTAT 57.779 30.769 0.00 0.00 0.00 1.98
2524 4139 0.842030 TGTCCCTGATGTCAAGCCCT 60.842 55.000 0.00 0.00 0.00 5.19
2909 4566 3.518634 TCCACTTTGTTGCTTTGGTTC 57.481 42.857 0.00 0.00 0.00 3.62
3083 4750 2.442236 AATGCCAAATCTGTCCCGAT 57.558 45.000 0.00 0.00 0.00 4.18
3286 4961 8.610896 GTCTGTCTCTATTCAATCTTTCATTGG 58.389 37.037 0.00 0.00 0.00 3.16
3433 5108 7.863375 CCCAGTAGTTTTATCTAGTTCATCTCG 59.137 40.741 0.00 0.00 0.00 4.04
3929 5657 6.657541 TCTTATTAAGAAATGCGAACCCAAGT 59.342 34.615 3.60 0.00 33.83 3.16
3946 5674 4.275936 CCCAAGTCCGATGATAATGGTTTC 59.724 45.833 0.00 0.00 0.00 2.78
3983 5711 4.816392 TGCTCAGTTAAATCGCACTCTTA 58.184 39.130 0.00 0.00 0.00 2.10
4249 6007 0.254747 TTCGCTGGATCCCCGAAATT 59.745 50.000 25.87 0.00 37.95 1.82
4261 6019 7.017750 TGGATCCCCGAAATTATGAGGTAATTA 59.982 37.037 9.90 0.00 37.34 1.40
4359 6125 3.077229 TGTTGTGTTTTCAGGATTGCG 57.923 42.857 0.00 0.00 0.00 4.85
4433 6201 2.846950 AGCCACCCTACTAATGAGGTT 58.153 47.619 0.00 0.00 31.52 3.50
4507 6349 7.703328 TGATTTGTTGTTTCTTAGGTCTTGTC 58.297 34.615 0.00 0.00 0.00 3.18
4787 6647 4.278419 ACCCTTCAAGTTGTTGTGCTTATC 59.722 41.667 2.11 0.00 34.98 1.75
4923 6787 4.768448 TCATGCACAATCTTCCATTGTTCT 59.232 37.500 0.00 0.00 39.94 3.01
4961 6825 2.307768 GTCATGTACCTCGGAGGATGA 58.692 52.381 30.13 23.24 37.67 2.92
5021 6885 5.123979 GCTCAGGGTAATAAGTTTCCTGTTG 59.876 44.000 0.00 0.00 43.83 3.33
5114 7026 9.635520 ATGTTCTTTTGCTCTCTATTTTCATTG 57.364 29.630 0.00 0.00 0.00 2.82
5119 7031 7.642071 TTTGCTCTCTATTTTCATTGTTTGC 57.358 32.000 0.00 0.00 0.00 3.68
5128 7040 8.346300 TCTATTTTCATTGTTTGCGTTTGTAGA 58.654 29.630 0.00 0.00 0.00 2.59
5287 7200 3.059352 AGCTACCGAAATCTTGCAACT 57.941 42.857 0.00 0.00 0.00 3.16
5413 7326 7.335627 TCTCTTACATTGGGGTAAGTTGTATG 58.664 38.462 11.52 0.00 46.54 2.39
5819 7757 6.092092 TCGTGATGCAATGGTATTCAAAAAG 58.908 36.000 0.00 0.00 0.00 2.27
5822 7760 7.116090 CGTGATGCAATGGTATTCAAAAAGAAA 59.884 33.333 0.00 0.00 40.22 2.52
5825 7771 9.763465 GATGCAATGGTATTCAAAAAGAAATTG 57.237 29.630 0.00 0.00 40.22 2.32
6027 7979 9.634021 ATTGGTACTTCTTCTCTTTTCTCTTTT 57.366 29.630 0.00 0.00 0.00 2.27
6034 7986 6.115446 TCTTCTCTTTTCTCTTTTCAGTGCA 58.885 36.000 0.00 0.00 0.00 4.57
6423 8379 6.016610 GCCTATTTTTGTTGTACAGGTCAAGA 60.017 38.462 0.00 0.00 0.00 3.02
6434 8390 7.828508 TGTACAGGTCAAGACTTAGAGTTTA 57.171 36.000 0.00 0.00 0.00 2.01
6446 8402 6.328672 AGACTTAGAGTTTATGGGAGATGCAT 59.671 38.462 0.00 0.00 0.00 3.96
6455 8411 6.452757 TTATGGGAGATGCATTGGAAGATA 57.547 37.500 0.00 0.00 0.00 1.98
6561 8518 3.515502 TGTTGATGGTTTGGTGTTTTCCA 59.484 39.130 0.00 0.00 35.49 3.53
6599 8561 6.267817 CGACAATATAGTAGTCCCGAAACAA 58.732 40.000 0.00 0.00 0.00 2.83
6646 8608 8.119226 GCAATGTTATGTTCTTCTGTCTGTATC 58.881 37.037 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
221 237 5.719085 TGGAATTAAAATGGGTACACTGCAT 59.281 36.000 0.00 0.00 0.00 3.96
268 1072 6.018588 CACTGAAACTACAACCGAATTACACA 60.019 38.462 0.00 0.00 0.00 3.72
277 1081 5.978934 AAGTTACACTGAAACTACAACCG 57.021 39.130 0.00 0.00 36.17 4.44
835 1932 9.094578 TCAAATTACACTGGAATTAAAATGGGA 57.905 29.630 0.00 0.00 0.00 4.37
1046 2201 1.405872 AACTACCGGAGACACACACA 58.594 50.000 9.46 0.00 0.00 3.72
1047 2202 2.555757 AGTAACTACCGGAGACACACAC 59.444 50.000 9.46 0.00 0.00 3.82
1048 2203 2.867624 AGTAACTACCGGAGACACACA 58.132 47.619 9.46 0.00 0.00 3.72
1049 2204 3.930634 AAGTAACTACCGGAGACACAC 57.069 47.619 9.46 0.00 0.00 3.82
1245 2408 9.920826 GCCAAATTAACAAAAGAAAGAAAGAAG 57.079 29.630 0.00 0.00 0.00 2.85
1381 2552 7.826690 AGCACGAAAATACAGGACATTTAAAT 58.173 30.769 0.00 0.00 0.00 1.40
1739 3335 6.890268 GGAACAAGTGGGGAAATAAGTAGATT 59.110 38.462 0.00 0.00 0.00 2.40
1747 3343 4.463050 AAGTGGAACAAGTGGGGAAATA 57.537 40.909 0.00 0.00 44.16 1.40
1762 3358 6.202331 TCCCAGAATATCTAGTGAAAGTGGA 58.798 40.000 0.00 0.00 0.00 4.02
1859 3455 7.001099 TCGGTCCTAACAAAGTTTAAGAGAT 57.999 36.000 0.00 0.00 0.00 2.75
1887 3483 1.486726 CACTTCACTAGCCTAAGGGGG 59.513 57.143 0.00 0.00 35.12 5.40
1990 3586 5.157770 TCTACTGGGAGGTCAAGGATATT 57.842 43.478 0.00 0.00 0.00 1.28
2254 3851 3.181507 CCGGACAAATCATAGTTGCACAG 60.182 47.826 0.00 0.00 0.00 3.66
2269 3866 5.104693 ACCACTCATAAACATATCCGGACAA 60.105 40.000 6.12 0.00 0.00 3.18
2524 4139 3.051940 ACCTCTCCATGCTAGAATCCA 57.948 47.619 0.00 0.00 0.00 3.41
3083 4750 7.981142 ACCCTCACTTGAATAAACTTTAGGTA 58.019 34.615 0.00 0.00 0.00 3.08
3223 4897 4.701956 AGGATAAAGAAACAACATGCGG 57.298 40.909 0.00 0.00 0.00 5.69
3286 4961 2.625790 ACAGTCTCACACTTCCTCTCAC 59.374 50.000 0.00 0.00 30.26 3.51
3433 5108 4.180057 CTCATCACACACTTTAGGAGCTC 58.820 47.826 4.71 4.71 0.00 4.09
3929 5657 5.588648 GTCTTTGGAAACCATTATCATCGGA 59.411 40.000 0.00 0.00 31.53 4.55
3946 5674 2.031120 TGAGCAAAAGTGGGTCTTTGG 58.969 47.619 0.00 0.00 44.50 3.28
3983 5711 4.517285 ACATCGCCATTAGATTGAACACT 58.483 39.130 0.00 0.00 0.00 3.55
4359 6125 2.153039 GCAAAGCGGCCATTTCAAC 58.847 52.632 2.24 0.00 0.00 3.18
4384 6152 6.404293 GCAGTGAGTTGACTTGGAAACTTTAA 60.404 38.462 0.00 0.00 36.77 1.52
4386 6154 4.142381 GCAGTGAGTTGACTTGGAAACTTT 60.142 41.667 0.00 0.00 36.77 2.66
4433 6201 3.505680 AGTTGACACAAGCTTGACAACAA 59.494 39.130 36.57 29.13 39.65 2.83
4488 6296 8.379457 ACATTAGACAAGACCTAAGAAACAAC 57.621 34.615 0.00 0.00 30.61 3.32
4507 6349 9.979578 AGAAGCATTAGAGAATCAGTACATTAG 57.020 33.333 0.00 0.00 37.82 1.73
4622 6464 8.429493 TGTAAGCAACATCATTAGATCTTGAG 57.571 34.615 0.00 0.00 33.51 3.02
4923 6787 2.894765 TGACCGTGAGATGAACCACTAA 59.105 45.455 0.00 0.00 0.00 2.24
4961 6825 4.660303 TGAGGTATATCTGCCAGGAACAAT 59.340 41.667 0.00 0.00 0.00 2.71
5021 6885 2.096013 GGTGACGCCTTTCTTGATTAGC 59.904 50.000 0.00 0.00 0.00 3.09
5114 7026 9.601971 TTACATAGAAAATCTACAAACGCAAAC 57.398 29.630 0.00 0.00 30.79 2.93
5287 7200 5.445069 TCCACATCTTCTTTGGACTTCAAA 58.555 37.500 0.00 0.00 42.50 2.69
5500 7431 8.229253 TGAAATGCATTAGCTACAATCTCAAT 57.771 30.769 13.39 0.00 42.74 2.57
5652 7588 7.280652 AGCTGCAAAAACAACACAAGAATAATT 59.719 29.630 1.02 0.00 0.00 1.40
5819 7757 7.019774 TCCATCGAATGAATCACTCAATTTC 57.980 36.000 0.00 0.00 37.67 2.17
5822 7760 6.293698 TGATCCATCGAATGAATCACTCAAT 58.706 36.000 0.00 0.00 37.67 2.57
5825 7771 6.609237 TTTGATCCATCGAATGAATCACTC 57.391 37.500 0.00 0.00 0.00 3.51
5849 7795 9.959721 AATCACCAGTCTAAGTAACAATAACAT 57.040 29.630 0.00 0.00 0.00 2.71
5975 7924 3.461378 TGCTGAGGTACACTAGGGTAA 57.539 47.619 6.38 0.00 0.00 2.85
6027 7979 8.635765 AAGAAAATTAATAGAAGGTGCACTGA 57.364 30.769 17.98 0.00 0.00 3.41
6347 8303 8.470040 TTGTTTCCATCTGTATTACGTTCTAC 57.530 34.615 0.00 0.00 0.00 2.59
6359 8315 5.754890 GCTGAAAAACATTGTTTCCATCTGT 59.245 36.000 14.80 0.00 34.67 3.41
6398 8354 5.699097 TGACCTGTACAACAAAAATAGGC 57.301 39.130 0.00 0.00 0.00 3.93
6423 8379 5.957771 TGCATCTCCCATAAACTCTAAGT 57.042 39.130 0.00 0.00 0.00 2.24
6434 8390 3.897657 ATCTTCCAATGCATCTCCCAT 57.102 42.857 0.00 0.00 0.00 4.00
6446 8402 3.110705 AGCAGAGCCTTCTATCTTCCAA 58.889 45.455 0.00 0.00 30.73 3.53
6455 8411 4.322567 CTCAAAACTAAGCAGAGCCTTCT 58.677 43.478 0.00 0.00 0.00 2.85
6561 8518 6.826741 ACTATATTGTCGGCTTACAAACCAAT 59.173 34.615 8.18 0.00 42.33 3.16
6646 8608 5.844301 AACACAAAGAACAAAAGCAACAG 57.156 34.783 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.