Multiple sequence alignment - TraesCS1B01G004200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G004200 chr1B 100.000 4550 0 0 1 4550 2541050 2536501 0.000000e+00 8403.0
1 TraesCS1B01G004200 chr1B 98.291 234 4 0 3946 4179 2526200 2525967 1.180000e-110 411.0
2 TraesCS1B01G004200 chr6B 87.997 1208 95 19 974 2151 181709888 181708701 0.000000e+00 1382.0
3 TraesCS1B01G004200 chr6B 97.694 607 14 0 3944 4550 35836770 35837376 0.000000e+00 1044.0
4 TraesCS1B01G004200 chr6B 84.682 692 66 18 3128 3811 181708543 181707884 0.000000e+00 654.0
5 TraesCS1B01G004200 chr6B 80.580 690 75 25 3283 3946 181705850 181705194 1.150000e-130 477.0
6 TraesCS1B01G004200 chr6B 88.498 313 29 3 3307 3617 181703354 181703047 5.560000e-99 372.0
7 TraesCS1B01G004200 chr6B 87.814 279 28 3 3394 3671 181700965 181700692 5.680000e-84 322.0
8 TraesCS1B01G004200 chr6D 87.264 1217 105 15 974 2160 97304435 97303239 0.000000e+00 1343.0
9 TraesCS1B01G004200 chr6D 86.711 745 72 15 3213 3946 97303036 97302308 0.000000e+00 802.0
10 TraesCS1B01G004200 chr6D 84.420 552 68 12 3283 3831 97300591 97300055 1.120000e-145 527.0
11 TraesCS1B01G004200 chr6D 76.025 488 68 25 3255 3737 97302210 97301767 1.660000e-49 207.0
12 TraesCS1B01G004200 chr6D 94.737 38 2 0 2679 2716 108466263 108466300 4.920000e-05 60.2
13 TraesCS1B01G004200 chr6A 87.427 1193 104 14 984 2151 116588896 116587725 0.000000e+00 1330.0
14 TraesCS1B01G004200 chr6A 84.232 964 101 23 3010 3940 116587708 116586763 0.000000e+00 891.0
15 TraesCS1B01G004200 chr6A 83.743 529 71 10 3307 3831 116585132 116584615 1.900000e-133 486.0
16 TraesCS1B01G004200 chr6A 85.435 460 52 7 3374 3831 116584007 116583561 8.920000e-127 464.0
17 TraesCS1B01G004200 chr1A 89.386 961 94 7 1 958 148253648 148252693 0.000000e+00 1203.0
18 TraesCS1B01G004200 chr1A 84.255 235 29 5 2445 2673 209105511 209105279 5.920000e-54 222.0
19 TraesCS1B01G004200 chr1A 88.095 84 9 1 2332 2414 209105597 209105514 1.040000e-16 99.0
20 TraesCS1B01G004200 chr1A 84.444 90 5 3 2235 2324 209105788 209105708 3.770000e-11 80.5
21 TraesCS1B01G004200 chr7D 89.364 959 88 12 1 954 478710567 478711516 0.000000e+00 1194.0
22 TraesCS1B01G004200 chr7D 91.189 454 32 8 4099 4550 47511089 47511536 1.080000e-170 610.0
23 TraesCS1B01G004200 chr7D 90.071 282 28 0 2318 2599 633225982 633225701 2.590000e-97 366.0
24 TraesCS1B01G004200 chr7D 86.517 89 11 1 2904 2992 345579411 345579324 3.750000e-16 97.1
25 TraesCS1B01G004200 chr7D 85.714 91 4 2 2234 2324 633226078 633225997 2.250000e-13 87.9
26 TraesCS1B01G004200 chr7D 97.368 38 1 0 2679 2716 487835570 487835533 1.060000e-06 65.8
27 TraesCS1B01G004200 chr7D 97.368 38 1 0 2679 2716 579028278 579028315 1.060000e-06 65.8
28 TraesCS1B01G004200 chr3A 88.693 964 101 8 1 958 125397774 125396813 0.000000e+00 1170.0
29 TraesCS1B01G004200 chr3A 88.174 964 106 8 1 958 548695103 548694142 0.000000e+00 1142.0
30 TraesCS1B01G004200 chr2D 88.728 967 93 14 1 958 633419760 633418801 0.000000e+00 1168.0
31 TraesCS1B01G004200 chr2D 88.589 964 94 13 1 954 633403121 633402164 0.000000e+00 1157.0
32 TraesCS1B01G004200 chr2D 97.368 38 1 0 2679 2716 637319215 637319178 1.060000e-06 65.8
33 TraesCS1B01G004200 chr2A 88.669 962 98 10 1 958 624480594 624481548 0.000000e+00 1162.0
34 TraesCS1B01G004200 chr2A 84.946 465 47 10 2229 2678 582160105 582160561 2.500000e-122 449.0
35 TraesCS1B01G004200 chr2A 89.565 115 12 0 2779 2893 582160651 582160765 3.670000e-31 147.0
36 TraesCS1B01G004200 chr2A 89.286 84 8 1 2910 2993 715765153 715765235 2.240000e-18 104.0
37 TraesCS1B01G004200 chr4A 88.462 962 98 12 1 954 8198542 8199498 0.000000e+00 1149.0
38 TraesCS1B01G004200 chr4A 86.275 102 13 1 2332 2432 308563224 308563325 4.810000e-20 110.0
39 TraesCS1B01G004200 chr4A 88.506 87 9 1 2909 2995 148757449 148757364 2.240000e-18 104.0
40 TraesCS1B01G004200 chr4A 84.783 92 5 2 2235 2326 308563033 308563115 2.920000e-12 84.2
41 TraesCS1B01G004200 chr4A 100.000 28 0 0 2299 2326 303034551 303034578 8.000000e-03 52.8
42 TraesCS1B01G004200 chr5A 88.241 961 109 4 1 958 652641400 652640441 0.000000e+00 1146.0
43 TraesCS1B01G004200 chr5A 91.104 607 30 12 3946 4550 560827395 560826811 0.000000e+00 800.0
44 TraesCS1B01G004200 chr5A 86.957 92 11 1 2906 2997 647108219 647108309 8.050000e-18 102.0
45 TraesCS1B01G004200 chr2B 95.973 596 18 5 3960 4550 724742383 724742977 0.000000e+00 963.0
46 TraesCS1B01G004200 chr7A 93.914 608 28 6 3945 4550 116198152 116197552 0.000000e+00 909.0
47 TraesCS1B01G004200 chr7A 86.170 94 11 2 2909 3002 284788088 284788179 2.900000e-17 100.0
48 TraesCS1B01G004200 chr5B 93.750 608 26 6 3945 4550 532457500 532456903 0.000000e+00 902.0
49 TraesCS1B01G004200 chr5B 97.885 520 11 0 4031 4550 611956839 611957358 0.000000e+00 900.0
50 TraesCS1B01G004200 chr5B 84.848 99 14 1 2904 3002 44657317 44657414 1.040000e-16 99.0
51 TraesCS1B01G004200 chr5D 90.572 594 43 7 3960 4550 335960435 335961018 0.000000e+00 774.0
52 TraesCS1B01G004200 chr5D 86.517 89 11 1 2904 2992 551611213 551611300 3.750000e-16 97.1
53 TraesCS1B01G004200 chr7B 85.452 598 61 13 3960 4550 641193386 641192808 2.340000e-167 599.0
54 TraesCS1B01G004200 chr7B 87.640 89 10 1 2904 2992 277651738 277651825 8.050000e-18 102.0
55 TraesCS1B01G004200 chr7B 91.525 59 5 0 2174 2232 747268085 747268027 1.050000e-11 82.4
56 TraesCS1B01G004200 chr7B 88.679 53 5 1 2229 2280 41061357 41061305 3.800000e-06 63.9
57 TraesCS1B01G004200 chr1D 93.921 329 19 1 2318 2646 62141169 62140842 3.160000e-136 496.0
58 TraesCS1B01G004200 chr1D 97.368 38 1 0 2679 2716 212469301 212469264 1.060000e-06 65.8
59 TraesCS1B01G004200 chr3B 85.981 428 50 9 2229 2650 825719788 825719365 2.500000e-122 449.0
60 TraesCS1B01G004200 chrUn 87.059 85 10 1 2909 2993 317868668 317868585 1.350000e-15 95.3
61 TraesCS1B01G004200 chr3D 97.368 38 1 0 2679 2716 213401330 213401367 1.060000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G004200 chr1B 2536501 2541050 4549 True 8403.00 8403 100.00000 1 4550 1 chr1B.!!$R2 4549
1 TraesCS1B01G004200 chr6B 35836770 35837376 606 False 1044.00 1044 97.69400 3944 4550 1 chr6B.!!$F1 606
2 TraesCS1B01G004200 chr6B 181700692 181709888 9196 True 641.40 1382 85.91420 974 3946 5 chr6B.!!$R1 2972
3 TraesCS1B01G004200 chr6D 97300055 97304435 4380 True 719.75 1343 83.60500 974 3946 4 chr6D.!!$R1 2972
4 TraesCS1B01G004200 chr6A 116583561 116588896 5335 True 792.75 1330 85.20925 984 3940 4 chr6A.!!$R1 2956
5 TraesCS1B01G004200 chr1A 148252693 148253648 955 True 1203.00 1203 89.38600 1 958 1 chr1A.!!$R1 957
6 TraesCS1B01G004200 chr7D 478710567 478711516 949 False 1194.00 1194 89.36400 1 954 1 chr7D.!!$F2 953
7 TraesCS1B01G004200 chr3A 125396813 125397774 961 True 1170.00 1170 88.69300 1 958 1 chr3A.!!$R1 957
8 TraesCS1B01G004200 chr3A 548694142 548695103 961 True 1142.00 1142 88.17400 1 958 1 chr3A.!!$R2 957
9 TraesCS1B01G004200 chr2D 633418801 633419760 959 True 1168.00 1168 88.72800 1 958 1 chr2D.!!$R2 957
10 TraesCS1B01G004200 chr2D 633402164 633403121 957 True 1157.00 1157 88.58900 1 954 1 chr2D.!!$R1 953
11 TraesCS1B01G004200 chr2A 624480594 624481548 954 False 1162.00 1162 88.66900 1 958 1 chr2A.!!$F1 957
12 TraesCS1B01G004200 chr2A 582160105 582160765 660 False 298.00 449 87.25550 2229 2893 2 chr2A.!!$F3 664
13 TraesCS1B01G004200 chr4A 8198542 8199498 956 False 1149.00 1149 88.46200 1 954 1 chr4A.!!$F1 953
14 TraesCS1B01G004200 chr5A 652640441 652641400 959 True 1146.00 1146 88.24100 1 958 1 chr5A.!!$R2 957
15 TraesCS1B01G004200 chr5A 560826811 560827395 584 True 800.00 800 91.10400 3946 4550 1 chr5A.!!$R1 604
16 TraesCS1B01G004200 chr2B 724742383 724742977 594 False 963.00 963 95.97300 3960 4550 1 chr2B.!!$F1 590
17 TraesCS1B01G004200 chr7A 116197552 116198152 600 True 909.00 909 93.91400 3945 4550 1 chr7A.!!$R1 605
18 TraesCS1B01G004200 chr5B 532456903 532457500 597 True 902.00 902 93.75000 3945 4550 1 chr5B.!!$R1 605
19 TraesCS1B01G004200 chr5B 611956839 611957358 519 False 900.00 900 97.88500 4031 4550 1 chr5B.!!$F2 519
20 TraesCS1B01G004200 chr5D 335960435 335961018 583 False 774.00 774 90.57200 3960 4550 1 chr5D.!!$F1 590
21 TraesCS1B01G004200 chr7B 641192808 641193386 578 True 599.00 599 85.45200 3960 4550 1 chr7B.!!$R2 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
439 441 0.030101 TTGCTTTTGGGCTCGTTTCG 59.970 50.0 0.0 0.0 0.00 3.46 F
963 973 0.179234 TGTGCGAACAACTTCTCCCA 59.821 50.0 0.0 0.0 0.00 4.37 F
1698 1738 0.034896 AATTCGCCGAGTTCACCACT 59.965 50.0 0.0 0.0 39.07 4.00 F
1745 1785 0.108615 CTCAACTCGGTAGTGCTGGG 60.109 60.0 0.0 0.0 35.62 4.45 F
2644 2718 0.170339 GCCGCCGCAACTTTTTCTAT 59.830 50.0 0.0 0.0 34.03 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1264 1280 0.036388 GTGAACAGGAATGCGAGGGA 60.036 55.0 0.0 0.0 0.00 4.20 R
2219 2272 0.094730 GTTAGCAGCCGTAGCGTTTG 59.905 55.0 0.0 0.0 46.67 2.93 R
3387 3566 0.107017 CCTTCTCCATGCACCCGATT 60.107 55.0 0.0 0.0 0.00 3.34 R
3447 3626 0.539438 AGATGTTGCCCTTGCCGAAA 60.539 50.0 0.0 0.0 36.33 3.46 R
4342 10545 1.022735 GCGATCCGAGAGAGTTGGTA 58.977 55.0 0.0 0.0 0.00 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.370885 GTCTAAAACGGAGCTCGGC 58.629 57.895 20.22 0.29 44.45 5.54
45 46 7.066887 TGCAAAAGTTATGACAAGTTCAGAGAA 59.933 33.333 0.00 0.00 37.77 2.87
62 63 3.008813 AGAGAAGCTCATGTTGACACCAT 59.991 43.478 0.00 0.00 32.06 3.55
83 84 8.034215 CACCATATTAAAGAATGGCTTGAAACA 58.966 33.333 12.43 0.00 45.53 2.83
84 85 8.592809 ACCATATTAAAGAATGGCTTGAAACAA 58.407 29.630 12.43 0.00 45.53 2.83
107 108 9.603921 ACAAAATTAATATGGCTTCAAATGGAG 57.396 29.630 6.23 0.00 0.00 3.86
124 125 7.922278 TCAAATGGAGAAAGTTTCAACATGAAG 59.078 33.333 17.65 12.74 37.70 3.02
170 172 7.374754 CGATCGATTCTGATATAAAGATCGTCC 59.625 40.741 10.26 7.13 46.10 4.79
171 173 6.853720 TCGATTCTGATATAAAGATCGTCCC 58.146 40.000 5.79 0.00 31.99 4.46
176 178 6.621613 TCTGATATAAAGATCGTCCCAATCG 58.378 40.000 0.00 0.00 0.00 3.34
197 199 5.116180 TCGGAGGTCATATGCAAAAGTTAG 58.884 41.667 0.00 0.00 0.00 2.34
200 202 5.529060 GGAGGTCATATGCAAAAGTTAGAGG 59.471 44.000 0.00 0.00 0.00 3.69
364 366 1.995376 AAAAACCCGTCAAGATGGCT 58.005 45.000 2.69 0.00 36.15 4.75
368 370 0.620556 ACCCGTCAAGATGGCTTCAT 59.379 50.000 2.69 0.00 36.15 2.57
439 441 0.030101 TTGCTTTTGGGCTCGTTTCG 59.970 50.000 0.00 0.00 0.00 3.46
488 492 2.203394 CCACAAGGTGCAGCCAGT 60.203 61.111 13.29 8.72 40.61 4.00
491 495 1.317613 CACAAGGTGCAGCCAGTTTA 58.682 50.000 13.29 0.00 40.61 2.01
492 496 1.680735 CACAAGGTGCAGCCAGTTTAA 59.319 47.619 13.29 0.00 40.61 1.52
519 523 6.423862 CGAACAGTTTTGAAAAGTTCGGATA 58.576 36.000 24.97 0.00 45.12 2.59
524 528 9.244799 ACAGTTTTGAAAAGTTCGGATAAAATC 57.755 29.630 0.00 0.00 0.00 2.17
558 562 3.671716 ACTAGGGTTTTGGACGTGAATC 58.328 45.455 0.00 0.00 0.00 2.52
559 563 1.905637 AGGGTTTTGGACGTGAATCC 58.094 50.000 0.00 0.00 39.45 3.01
603 607 2.094130 GTCCAGCCGCCTCTTATATACC 60.094 54.545 0.00 0.00 0.00 2.73
645 649 5.270083 TGAACAACACACAATCGATCAAAC 58.730 37.500 0.00 0.00 0.00 2.93
695 700 7.147177 ACCTTTTCTCCTTAACCCTAGTTCTTT 60.147 37.037 0.00 0.00 37.42 2.52
709 715 6.366604 CCCTAGTTCTTTTTCTTCTCGTTCTC 59.633 42.308 0.00 0.00 0.00 2.87
722 728 3.314357 TCTCGTTCTCTGTTCGTTCTTCA 59.686 43.478 0.00 0.00 0.00 3.02
796 805 4.873129 CATAGCCACCGCGCGTCT 62.873 66.667 29.95 20.48 41.18 4.18
833 842 2.686816 GCGTGTGGGATTTCGGGTG 61.687 63.158 0.00 0.00 0.00 4.61
884 894 1.447314 GCGTTTCCGGACGGATCTT 60.447 57.895 14.89 0.00 44.74 2.40
894 904 1.667724 GGACGGATCTTCTTCGACGTA 59.332 52.381 0.00 0.00 34.43 3.57
905 915 2.410638 TTCGACGTAAGCTGCGGTGT 62.411 55.000 14.16 0.00 45.62 4.16
959 969 3.355816 TCGTGTGCGAACAACTTCT 57.644 47.368 0.00 0.00 44.92 2.85
960 970 1.205657 TCGTGTGCGAACAACTTCTC 58.794 50.000 0.00 0.00 44.92 2.87
961 971 0.232303 CGTGTGCGAACAACTTCTCC 59.768 55.000 0.00 0.00 41.33 3.71
962 972 0.586802 GTGTGCGAACAACTTCTCCC 59.413 55.000 0.00 0.00 0.00 4.30
963 973 0.179234 TGTGCGAACAACTTCTCCCA 59.821 50.000 0.00 0.00 0.00 4.37
964 974 1.202758 TGTGCGAACAACTTCTCCCAT 60.203 47.619 0.00 0.00 0.00 4.00
965 975 2.037902 TGTGCGAACAACTTCTCCCATA 59.962 45.455 0.00 0.00 0.00 2.74
966 976 2.673368 GTGCGAACAACTTCTCCCATAG 59.327 50.000 0.00 0.00 0.00 2.23
967 977 1.666189 GCGAACAACTTCTCCCATAGC 59.334 52.381 0.00 0.00 0.00 2.97
968 978 2.678190 GCGAACAACTTCTCCCATAGCT 60.678 50.000 0.00 0.00 0.00 3.32
969 979 2.932614 CGAACAACTTCTCCCATAGCTG 59.067 50.000 0.00 0.00 0.00 4.24
970 980 3.368427 CGAACAACTTCTCCCATAGCTGA 60.368 47.826 0.00 0.00 0.00 4.26
971 981 4.681781 CGAACAACTTCTCCCATAGCTGAT 60.682 45.833 0.00 0.00 0.00 2.90
972 982 5.451937 CGAACAACTTCTCCCATAGCTGATA 60.452 44.000 0.00 0.00 0.00 2.15
973 983 5.957771 ACAACTTCTCCCATAGCTGATAA 57.042 39.130 0.00 0.00 0.00 1.75
974 984 5.675538 ACAACTTCTCCCATAGCTGATAAC 58.324 41.667 0.00 0.00 0.00 1.89
975 985 4.592485 ACTTCTCCCATAGCTGATAACG 57.408 45.455 0.00 0.00 0.00 3.18
976 986 3.961408 ACTTCTCCCATAGCTGATAACGT 59.039 43.478 0.00 0.00 0.00 3.99
977 987 4.038162 ACTTCTCCCATAGCTGATAACGTC 59.962 45.833 0.00 0.00 0.00 4.34
978 988 2.552743 TCTCCCATAGCTGATAACGTCG 59.447 50.000 0.00 0.00 0.00 5.12
979 989 2.552743 CTCCCATAGCTGATAACGTCGA 59.447 50.000 0.00 0.00 0.00 4.20
980 990 2.552743 TCCCATAGCTGATAACGTCGAG 59.447 50.000 0.00 0.00 0.00 4.04
981 991 2.320367 CCATAGCTGATAACGTCGAGC 58.680 52.381 0.00 0.00 33.74 5.03
982 992 2.320367 CATAGCTGATAACGTCGAGCC 58.680 52.381 0.00 0.00 33.92 4.70
986 996 1.269309 GCTGATAACGTCGAGCCAGAT 60.269 52.381 0.00 0.00 0.00 2.90
989 999 0.459899 ATAACGTCGAGCCAGATGCA 59.540 50.000 0.00 0.00 44.83 3.96
993 1003 1.016130 CGTCGAGCCAGATGCAAACT 61.016 55.000 0.00 0.00 44.83 2.66
998 1008 1.881973 GAGCCAGATGCAAACTCACAA 59.118 47.619 0.00 0.00 44.83 3.33
1096 1112 3.622060 ATGGTCCGCTTCAACCCGG 62.622 63.158 0.00 0.00 45.64 5.73
1132 1148 4.680237 CGCTCGCCTTCCACCACA 62.680 66.667 0.00 0.00 0.00 4.17
1147 1163 0.320683 CCACATCGAGTTCTGGTGCA 60.321 55.000 0.00 0.00 0.00 4.57
1149 1165 0.320771 ACATCGAGTTCTGGTGCACC 60.321 55.000 29.67 29.67 0.00 5.01
1155 1171 4.228567 TTCTGGTGCACCGACGCA 62.229 61.111 30.07 12.05 40.32 5.24
1278 1294 0.250209 CAGGATCCCTCGCATTCCTG 60.250 60.000 8.55 3.62 46.66 3.86
1293 1309 2.186903 CTGTTCACCGCGCCCTAT 59.813 61.111 0.00 0.00 0.00 2.57
1314 1354 1.699656 CCAACGGCTGCATCTTCTCG 61.700 60.000 0.50 0.00 0.00 4.04
1316 1356 2.172483 AACGGCTGCATCTTCTCGGT 62.172 55.000 0.50 0.00 0.00 4.69
1344 1384 2.509336 CGCCGGTTCTTCGCTGAT 60.509 61.111 1.90 0.00 0.00 2.90
1480 1520 0.391130 CTTCGGATTTGCGGAGGTCA 60.391 55.000 0.00 0.00 0.00 4.02
1548 1588 2.281484 GACGTGCCCTTCTTGCCA 60.281 61.111 0.00 0.00 0.00 4.92
1556 1596 2.532250 CCCTTCTTGCCAGGGTTATT 57.468 50.000 0.00 0.00 45.70 1.40
1557 1597 2.820178 CCCTTCTTGCCAGGGTTATTT 58.180 47.619 0.00 0.00 45.70 1.40
1612 1652 3.834447 CTGACGCGGTTCGACCACA 62.834 63.158 12.47 0.00 38.47 4.17
1635 1675 2.978824 GGCAACGTCCCAGAGCTA 59.021 61.111 0.00 0.00 0.00 3.32
1665 1705 3.799755 GCCTACGTTGCCGGCTTG 61.800 66.667 29.70 19.19 40.62 4.01
1680 1720 1.301401 CTTGACGGGCTTCCACGAA 60.301 57.895 0.00 0.00 0.00 3.85
1695 1735 1.012486 ACGAATTCGCCGAGTTCACC 61.012 55.000 27.03 0.00 44.43 4.02
1698 1738 0.034896 AATTCGCCGAGTTCACCACT 59.965 50.000 0.00 0.00 39.07 4.00
1707 1747 0.674534 AGTTCACCACTGAGGACGTC 59.325 55.000 7.13 7.13 41.22 4.34
1735 1775 3.764466 AGAGCGGGCTCAACTCGG 61.764 66.667 21.59 0.00 44.99 4.63
1737 1777 2.678934 AGCGGGCTCAACTCGGTA 60.679 61.111 0.00 0.00 32.75 4.02
1743 1783 0.737715 GGCTCAACTCGGTAGTGCTG 60.738 60.000 0.00 0.00 35.62 4.41
1744 1784 0.737715 GCTCAACTCGGTAGTGCTGG 60.738 60.000 0.00 0.00 35.62 4.85
1745 1785 0.108615 CTCAACTCGGTAGTGCTGGG 60.109 60.000 0.00 0.00 35.62 4.45
1746 1786 1.741770 CAACTCGGTAGTGCTGGGC 60.742 63.158 0.00 0.00 35.62 5.36
1747 1787 1.913762 AACTCGGTAGTGCTGGGCT 60.914 57.895 0.00 0.00 35.62 5.19
1748 1788 2.172483 AACTCGGTAGTGCTGGGCTG 62.172 60.000 0.00 0.00 35.62 4.85
1749 1789 4.082523 TCGGTAGTGCTGGGCTGC 62.083 66.667 0.00 0.00 0.00 5.25
1750 1790 4.087892 CGGTAGTGCTGGGCTGCT 62.088 66.667 0.00 0.00 0.00 4.24
1751 1791 2.437359 GGTAGTGCTGGGCTGCTG 60.437 66.667 0.00 0.00 0.00 4.41
1787 1827 3.437795 GTGCCGCTGCTGCTCAAT 61.438 61.111 16.81 0.00 38.71 2.57
1790 1830 2.693762 GCCGCTGCTGCTCAATGAA 61.694 57.895 14.03 0.00 36.97 2.57
1796 1836 0.537143 TGCTGCTCAATGAACCGGTT 60.537 50.000 22.50 22.50 0.00 4.44
1912 1952 2.725312 GGACGCTCAGGGAGATGCA 61.725 63.158 0.00 0.00 0.00 3.96
1922 1962 2.965999 GAGATGCATGCGCGCTCT 60.966 61.111 33.29 25.35 42.97 4.09
1923 1963 2.513204 AGATGCATGCGCGCTCTT 60.513 55.556 33.29 18.10 42.97 2.85
1937 1977 1.379044 CTCTTCCATGGGCGGCTTT 60.379 57.895 13.02 0.00 0.00 3.51
1952 1992 1.856265 GCTTTGACTTCCTGCCACCG 61.856 60.000 0.00 0.00 0.00 4.94
1982 2022 1.100510 AGTACTATGAAGGCGTGCGA 58.899 50.000 0.00 0.00 0.00 5.10
2139 2181 4.751767 AACACAGCCTTTCCAATTTGAA 57.248 36.364 0.00 0.00 0.00 2.69
2151 2193 8.102676 CCTTTCCAATTTGAATTTGGGTTCTAT 58.897 33.333 16.25 0.00 0.00 1.98
2168 2221 9.220906 TGGGTTCTATAGTAAATTACATGAGGT 57.779 33.333 0.00 0.00 0.00 3.85
2186 2239 7.944729 ATGAGGTACATGCAAACTTTAAGAT 57.055 32.000 0.00 0.00 37.87 2.40
2187 2240 7.377766 TGAGGTACATGCAAACTTTAAGATC 57.622 36.000 0.00 0.00 0.00 2.75
2188 2241 6.092122 TGAGGTACATGCAAACTTTAAGATCG 59.908 38.462 0.00 0.00 0.00 3.69
2189 2242 5.028375 GGTACATGCAAACTTTAAGATCGC 58.972 41.667 0.00 0.00 0.00 4.58
2190 2243 4.764679 ACATGCAAACTTTAAGATCGCA 57.235 36.364 0.00 4.31 0.00 5.10
2191 2244 4.726416 ACATGCAAACTTTAAGATCGCAG 58.274 39.130 0.00 1.84 0.00 5.18
2192 2245 3.829886 TGCAAACTTTAAGATCGCAGG 57.170 42.857 0.00 0.00 0.00 4.85
2193 2246 2.095263 TGCAAACTTTAAGATCGCAGGC 60.095 45.455 0.00 0.00 0.00 4.85
2194 2247 2.162408 GCAAACTTTAAGATCGCAGGCT 59.838 45.455 0.00 0.00 0.00 4.58
2195 2248 3.374058 GCAAACTTTAAGATCGCAGGCTA 59.626 43.478 0.00 0.00 0.00 3.93
2196 2249 4.142687 GCAAACTTTAAGATCGCAGGCTAA 60.143 41.667 0.00 0.00 0.00 3.09
2197 2250 5.619086 GCAAACTTTAAGATCGCAGGCTAAA 60.619 40.000 0.00 0.00 0.00 1.85
2198 2251 5.547181 AACTTTAAGATCGCAGGCTAAAC 57.453 39.130 0.00 0.00 0.00 2.01
2199 2252 3.939592 ACTTTAAGATCGCAGGCTAAACC 59.060 43.478 0.00 0.00 39.61 3.27
2200 2253 3.620427 TTAAGATCGCAGGCTAAACCA 57.380 42.857 0.00 0.00 43.14 3.67
2201 2254 2.717639 AAGATCGCAGGCTAAACCAT 57.282 45.000 0.00 0.00 43.14 3.55
2202 2255 2.717639 AGATCGCAGGCTAAACCATT 57.282 45.000 0.00 0.00 43.14 3.16
2203 2256 3.004752 AGATCGCAGGCTAAACCATTT 57.995 42.857 0.00 0.00 43.14 2.32
2204 2257 2.945668 AGATCGCAGGCTAAACCATTTC 59.054 45.455 0.00 0.00 43.14 2.17
2205 2258 2.192664 TCGCAGGCTAAACCATTTCA 57.807 45.000 0.00 0.00 43.14 2.69
2206 2259 1.810151 TCGCAGGCTAAACCATTTCAC 59.190 47.619 0.00 0.00 43.14 3.18
2207 2260 1.135402 CGCAGGCTAAACCATTTCACC 60.135 52.381 0.00 0.00 43.14 4.02
2208 2261 1.135402 GCAGGCTAAACCATTTCACCG 60.135 52.381 0.00 0.00 43.14 4.94
2209 2262 1.135402 CAGGCTAAACCATTTCACCGC 60.135 52.381 0.00 0.00 43.14 5.68
2210 2263 1.173913 GGCTAAACCATTTCACCGCT 58.826 50.000 0.00 0.00 38.86 5.52
2211 2264 1.135402 GGCTAAACCATTTCACCGCTG 60.135 52.381 0.00 0.00 38.86 5.18
2212 2265 1.135402 GCTAAACCATTTCACCGCTGG 60.135 52.381 0.00 0.00 36.09 4.85
2213 2266 0.885196 TAAACCATTTCACCGCTGGC 59.115 50.000 0.00 0.00 33.12 4.85
2214 2267 0.827507 AAACCATTTCACCGCTGGCT 60.828 50.000 0.00 0.00 33.12 4.75
2215 2268 1.244019 AACCATTTCACCGCTGGCTC 61.244 55.000 0.00 0.00 33.12 4.70
2216 2269 2.753966 CCATTTCACCGCTGGCTCG 61.754 63.158 0.00 0.00 0.00 5.03
2217 2270 2.034879 CATTTCACCGCTGGCTCGT 61.035 57.895 0.00 0.00 0.00 4.18
2218 2271 2.034879 ATTTCACCGCTGGCTCGTG 61.035 57.895 4.12 4.12 0.00 4.35
2222 2275 4.927782 ACCGCTGGCTCGTGCAAA 62.928 61.111 12.07 0.00 41.91 3.68
2223 2276 4.389576 CCGCTGGCTCGTGCAAAC 62.390 66.667 12.07 0.00 41.91 2.93
2224 2277 4.724697 CGCTGGCTCGTGCAAACG 62.725 66.667 12.07 3.31 41.91 3.60
2226 2279 3.349006 CTGGCTCGTGCAAACGCT 61.349 61.111 12.07 0.00 41.91 5.07
2227 2280 2.027073 CTGGCTCGTGCAAACGCTA 61.027 57.895 12.07 0.00 41.91 4.26
2232 2285 3.411351 CGTGCAAACGCTACGGCT 61.411 61.111 0.00 0.00 36.09 5.52
2240 2293 2.585247 CGCTACGGCTGCTAACCC 60.585 66.667 0.00 0.00 36.09 4.11
2261 2314 2.324330 TTCGCGGGAACAGTGCATG 61.324 57.895 11.32 0.00 0.00 4.06
2281 2334 5.877012 GCATGTTCCTGTATATCCCACATAG 59.123 44.000 0.00 0.00 0.00 2.23
2282 2335 6.520742 GCATGTTCCTGTATATCCCACATAGT 60.521 42.308 0.00 0.00 0.00 2.12
2284 2337 7.534723 TGTTCCTGTATATCCCACATAGTAC 57.465 40.000 0.00 0.00 0.00 2.73
2285 2338 7.070629 TGTTCCTGTATATCCCACATAGTACA 58.929 38.462 0.00 0.00 0.00 2.90
2286 2339 7.565768 TGTTCCTGTATATCCCACATAGTACAA 59.434 37.037 0.00 0.00 0.00 2.41
2287 2340 8.426489 GTTCCTGTATATCCCACATAGTACAAA 58.574 37.037 0.00 0.00 0.00 2.83
2288 2341 7.959175 TCCTGTATATCCCACATAGTACAAAC 58.041 38.462 0.00 0.00 0.00 2.93
2289 2342 7.787904 TCCTGTATATCCCACATAGTACAAACT 59.212 37.037 0.00 0.00 39.91 2.66
2290 2343 9.085645 CCTGTATATCCCACATAGTACAAACTA 57.914 37.037 0.00 0.00 42.35 2.24
2292 2345 9.085645 TGTATATCCCACATAGTACAAACTAGG 57.914 37.037 0.00 0.00 43.90 3.02
2293 2346 9.305555 GTATATCCCACATAGTACAAACTAGGA 57.694 37.037 4.41 0.13 41.48 2.94
2294 2347 6.732896 ATCCCACATAGTACAAACTAGGAG 57.267 41.667 4.41 0.00 41.48 3.69
2311 2364 9.435570 AAACTAGGAGTAGTACATGTCCATATT 57.564 33.333 0.00 0.00 38.66 1.28
2329 2382 8.703336 GTCCATATTTTTCTCAGAAAACAAAGC 58.297 33.333 12.33 0.00 31.88 3.51
2341 2415 4.096984 AGAAAACAAAGCACTCAAGGTCTG 59.903 41.667 0.00 0.00 0.00 3.51
2373 2447 4.900635 AACATCACCAGTTCAACACTTC 57.099 40.909 0.00 0.00 30.92 3.01
2381 2455 4.080863 ACCAGTTCAACACTTCAGAACTCT 60.081 41.667 4.24 0.00 46.47 3.24
2393 2467 3.165875 TCAGAACTCTTGTACCTCCTGG 58.834 50.000 0.00 0.00 39.83 4.45
2414 2488 3.066342 GGGATGTGCTTGTGATGAATCAG 59.934 47.826 0.00 0.00 37.51 2.90
2422 2496 2.777094 TGTGATGAATCAGGCAACGAA 58.223 42.857 0.00 0.00 46.39 3.85
2451 2525 4.287238 TGCCTTTCAGAGAAAAACGAAC 57.713 40.909 0.00 0.00 0.00 3.95
2453 2527 4.156922 TGCCTTTCAGAGAAAAACGAACAA 59.843 37.500 0.00 0.00 0.00 2.83
2459 2533 6.693315 TCAGAGAAAAACGAACAAAGGATT 57.307 33.333 0.00 0.00 0.00 3.01
2462 2536 6.414987 CAGAGAAAAACGAACAAAGGATTGAC 59.585 38.462 0.00 0.00 38.94 3.18
2463 2537 6.318900 AGAGAAAAACGAACAAAGGATTGACT 59.681 34.615 0.00 0.00 38.94 3.41
2492 2566 1.276622 GACTCCTGTACCACCACCAT 58.723 55.000 0.00 0.00 0.00 3.55
2530 2604 0.304705 GTTGCAACCGTGTGAGACTG 59.695 55.000 19.15 0.00 0.00 3.51
2576 2650 4.147449 TCGTGCAGATGCCCCTCG 62.147 66.667 1.72 2.92 41.18 4.63
2586 2660 4.440127 GCCCCTCGTCGCCGTTAA 62.440 66.667 0.00 0.00 35.01 2.01
2598 2672 1.302511 CCGTTAACAGCCAGCCAGT 60.303 57.895 6.39 0.00 0.00 4.00
2602 2676 0.320421 TTAACAGCCAGCCAGTCGAC 60.320 55.000 7.70 7.70 0.00 4.20
2620 2694 1.073199 CGGCACCTGGGAAGAACTT 59.927 57.895 0.00 0.00 0.00 2.66
2621 2695 1.237285 CGGCACCTGGGAAGAACTTG 61.237 60.000 0.00 0.00 0.00 3.16
2644 2718 0.170339 GCCGCCGCAACTTTTTCTAT 59.830 50.000 0.00 0.00 34.03 1.98
2645 2719 1.794076 GCCGCCGCAACTTTTTCTATC 60.794 52.381 0.00 0.00 34.03 2.08
2648 2722 1.202143 GCCGCAACTTTTTCTATCGGG 60.202 52.381 0.00 0.00 36.27 5.14
2649 2723 1.400494 CCGCAACTTTTTCTATCGGGG 59.600 52.381 0.00 0.00 32.55 5.73
2650 2724 1.400494 CGCAACTTTTTCTATCGGGGG 59.600 52.381 0.00 0.00 0.00 5.40
2668 2742 1.534203 GGAGAGAAGGGAATGGGGC 59.466 63.158 0.00 0.00 0.00 5.80
2697 2771 2.432563 CCCCGGCACTGTGGTTTA 59.567 61.111 10.21 0.00 0.00 2.01
2698 2772 1.228306 CCCCGGCACTGTGGTTTAA 60.228 57.895 10.21 0.00 0.00 1.52
2699 2773 0.610785 CCCCGGCACTGTGGTTTAAT 60.611 55.000 10.21 0.00 0.00 1.40
2700 2774 0.525761 CCCGGCACTGTGGTTTAATG 59.474 55.000 10.21 0.00 0.00 1.90
2701 2775 1.529226 CCGGCACTGTGGTTTAATGA 58.471 50.000 10.21 0.00 0.00 2.57
2702 2776 1.468520 CCGGCACTGTGGTTTAATGAG 59.531 52.381 10.21 0.00 0.00 2.90
2703 2777 1.135689 CGGCACTGTGGTTTAATGAGC 60.136 52.381 10.21 0.00 0.00 4.26
2704 2778 1.135689 GGCACTGTGGTTTAATGAGCG 60.136 52.381 10.21 0.00 0.00 5.03
2705 2779 1.135689 GCACTGTGGTTTAATGAGCGG 60.136 52.381 10.21 0.00 0.00 5.52
2706 2780 2.422597 CACTGTGGTTTAATGAGCGGA 58.577 47.619 0.00 0.00 0.00 5.54
2707 2781 2.811431 CACTGTGGTTTAATGAGCGGAA 59.189 45.455 0.00 0.00 0.00 4.30
2708 2782 3.252215 CACTGTGGTTTAATGAGCGGAAA 59.748 43.478 0.00 0.00 0.00 3.13
2709 2783 3.886505 ACTGTGGTTTAATGAGCGGAAAA 59.113 39.130 0.00 0.00 0.00 2.29
2710 2784 4.522789 ACTGTGGTTTAATGAGCGGAAAAT 59.477 37.500 0.00 0.00 0.00 1.82
2711 2785 5.054390 TGTGGTTTAATGAGCGGAAAATC 57.946 39.130 0.00 0.00 0.00 2.17
2712 2786 4.520874 TGTGGTTTAATGAGCGGAAAATCA 59.479 37.500 0.00 0.00 0.00 2.57
2729 2803 6.372937 GGAAAATCACTAGGTTTCCTGAGAAG 59.627 42.308 16.32 0.00 44.57 2.85
2775 2874 1.067295 TGGGCCTCTGTTTCAGTCAT 58.933 50.000 4.53 0.00 32.61 3.06
2777 2876 2.642311 TGGGCCTCTGTTTCAGTCATTA 59.358 45.455 4.53 0.00 32.61 1.90
2785 2884 2.007608 GTTTCAGTCATTAGGCCCGTC 58.992 52.381 0.00 0.00 0.00 4.79
2790 2889 1.306654 TCATTAGGCCCGTCCCAGT 60.307 57.895 0.00 0.00 34.51 4.00
2798 2897 1.376037 CCCGTCCCAGTGAAAGAGC 60.376 63.158 0.00 0.00 0.00 4.09
2805 2904 0.514691 CCAGTGAAAGAGCAGCGAAC 59.485 55.000 0.00 0.00 0.00 3.95
2818 2917 1.442017 GCGAACGCGAAGGCAAATT 60.442 52.632 15.93 0.00 40.82 1.82
2822 2921 2.126888 CGCGAAGGCAAATTGCGT 60.127 55.556 12.15 9.81 46.21 5.24
2850 2949 1.153628 GCACGATCGCCTGGTTAGT 60.154 57.895 16.60 0.00 0.00 2.24
2889 2988 3.654020 GATTGCATCGCGGGGAGC 61.654 66.667 6.13 6.14 43.95 4.70
2894 2993 4.161295 CATCGCGGGGAGCCTTCA 62.161 66.667 6.13 0.00 44.76 3.02
2895 2994 4.162690 ATCGCGGGGAGCCTTCAC 62.163 66.667 6.13 0.00 44.76 3.18
2897 2996 4.697756 CGCGGGGAGCCTTCACAA 62.698 66.667 0.00 0.00 44.76 3.33
2898 2997 3.056328 GCGGGGAGCCTTCACAAC 61.056 66.667 0.00 0.00 40.81 3.32
2899 2998 2.750350 CGGGGAGCCTTCACAACT 59.250 61.111 0.00 0.00 0.00 3.16
2900 2999 1.073199 CGGGGAGCCTTCACAACTT 59.927 57.895 0.00 0.00 0.00 2.66
2901 3000 0.537371 CGGGGAGCCTTCACAACTTT 60.537 55.000 0.00 0.00 0.00 2.66
2902 3001 1.248486 GGGGAGCCTTCACAACTTTC 58.752 55.000 0.00 0.00 0.00 2.62
2903 3002 1.478654 GGGGAGCCTTCACAACTTTCA 60.479 52.381 0.00 0.00 0.00 2.69
2904 3003 1.609072 GGGAGCCTTCACAACTTTCAC 59.391 52.381 0.00 0.00 0.00 3.18
2905 3004 1.609072 GGAGCCTTCACAACTTTCACC 59.391 52.381 0.00 0.00 0.00 4.02
2906 3005 1.609072 GAGCCTTCACAACTTTCACCC 59.391 52.381 0.00 0.00 0.00 4.61
2907 3006 0.310854 GCCTTCACAACTTTCACCCG 59.689 55.000 0.00 0.00 0.00 5.28
2908 3007 0.310854 CCTTCACAACTTTCACCCGC 59.689 55.000 0.00 0.00 0.00 6.13
2909 3008 1.021202 CTTCACAACTTTCACCCGCA 58.979 50.000 0.00 0.00 0.00 5.69
2910 3009 0.736053 TTCACAACTTTCACCCGCAC 59.264 50.000 0.00 0.00 0.00 5.34
2911 3010 1.010125 CACAACTTTCACCCGCACG 60.010 57.895 0.00 0.00 0.00 5.34
2912 3011 1.153329 ACAACTTTCACCCGCACGA 60.153 52.632 0.00 0.00 0.00 4.35
2913 3012 0.745128 ACAACTTTCACCCGCACGAA 60.745 50.000 0.00 0.00 0.00 3.85
2914 3013 0.591170 CAACTTTCACCCGCACGAAT 59.409 50.000 0.00 0.00 0.00 3.34
2915 3014 1.801771 CAACTTTCACCCGCACGAATA 59.198 47.619 0.00 0.00 0.00 1.75
2916 3015 2.396590 ACTTTCACCCGCACGAATAT 57.603 45.000 0.00 0.00 0.00 1.28
2917 3016 2.277084 ACTTTCACCCGCACGAATATC 58.723 47.619 0.00 0.00 0.00 1.63
2918 3017 1.597663 CTTTCACCCGCACGAATATCC 59.402 52.381 0.00 0.00 0.00 2.59
2919 3018 0.537653 TTCACCCGCACGAATATCCA 59.462 50.000 0.00 0.00 0.00 3.41
2920 3019 0.756294 TCACCCGCACGAATATCCAT 59.244 50.000 0.00 0.00 0.00 3.41
2921 3020 0.867746 CACCCGCACGAATATCCATG 59.132 55.000 0.00 0.00 0.00 3.66
2922 3021 0.756294 ACCCGCACGAATATCCATGA 59.244 50.000 0.00 0.00 0.00 3.07
2923 3022 1.140052 ACCCGCACGAATATCCATGAA 59.860 47.619 0.00 0.00 0.00 2.57
2924 3023 2.217750 CCCGCACGAATATCCATGAAA 58.782 47.619 0.00 0.00 0.00 2.69
2925 3024 2.616376 CCCGCACGAATATCCATGAAAA 59.384 45.455 0.00 0.00 0.00 2.29
2926 3025 3.066064 CCCGCACGAATATCCATGAAAAA 59.934 43.478 0.00 0.00 0.00 1.94
2927 3026 4.282068 CCGCACGAATATCCATGAAAAAG 58.718 43.478 0.00 0.00 0.00 2.27
2928 3027 4.201910 CCGCACGAATATCCATGAAAAAGT 60.202 41.667 0.00 0.00 0.00 2.66
2929 3028 4.963953 CGCACGAATATCCATGAAAAAGTC 59.036 41.667 0.00 0.00 0.00 3.01
2930 3029 5.447144 CGCACGAATATCCATGAAAAAGTCA 60.447 40.000 0.00 0.00 41.67 3.41
2931 3030 6.321717 GCACGAATATCCATGAAAAAGTCAA 58.678 36.000 0.00 0.00 40.50 3.18
2932 3031 6.974622 GCACGAATATCCATGAAAAAGTCAAT 59.025 34.615 0.00 0.00 40.50 2.57
2933 3032 7.043854 GCACGAATATCCATGAAAAAGTCAATG 60.044 37.037 0.00 0.00 40.50 2.82
2934 3033 8.183536 CACGAATATCCATGAAAAAGTCAATGA 58.816 33.333 0.00 0.00 40.50 2.57
2935 3034 8.184192 ACGAATATCCATGAAAAAGTCAATGAC 58.816 33.333 5.02 5.02 40.50 3.06
2936 3035 8.400947 CGAATATCCATGAAAAAGTCAATGACT 58.599 33.333 10.56 10.56 45.64 3.41
2950 3049 7.726033 AGTCAATGACTTAGGACTTAGATGT 57.274 36.000 10.56 0.00 40.28 3.06
2951 3050 7.551585 AGTCAATGACTTAGGACTTAGATGTG 58.448 38.462 10.56 0.00 40.28 3.21
2952 3051 6.256757 GTCAATGACTTAGGACTTAGATGTGC 59.743 42.308 6.07 0.00 0.00 4.57
2953 3052 5.939764 ATGACTTAGGACTTAGATGTGCA 57.060 39.130 0.00 0.00 0.00 4.57
2954 3053 5.738619 TGACTTAGGACTTAGATGTGCAA 57.261 39.130 0.00 0.00 0.00 4.08
2955 3054 6.299805 TGACTTAGGACTTAGATGTGCAAT 57.700 37.500 0.00 0.00 0.00 3.56
2956 3055 7.418337 TGACTTAGGACTTAGATGTGCAATA 57.582 36.000 0.00 0.00 0.00 1.90
2957 3056 7.265673 TGACTTAGGACTTAGATGTGCAATAC 58.734 38.462 0.00 0.00 0.00 1.89
2958 3057 7.124298 TGACTTAGGACTTAGATGTGCAATACT 59.876 37.037 0.00 0.00 0.00 2.12
2959 3058 7.852263 ACTTAGGACTTAGATGTGCAATACTT 58.148 34.615 0.00 0.00 0.00 2.24
2960 3059 8.978472 ACTTAGGACTTAGATGTGCAATACTTA 58.022 33.333 0.00 0.00 0.00 2.24
2961 3060 9.988815 CTTAGGACTTAGATGTGCAATACTTAT 57.011 33.333 0.00 0.00 0.00 1.73
3002 3101 8.227731 GCTTTAGCAAAACTGTTAAAGGTATG 57.772 34.615 17.57 5.63 40.52 2.39
3003 3102 7.328493 GCTTTAGCAAAACTGTTAAAGGTATGG 59.672 37.037 17.57 5.39 40.52 2.74
3004 3103 5.722021 AGCAAAACTGTTAAAGGTATGGG 57.278 39.130 0.00 0.00 0.00 4.00
3005 3104 5.144832 AGCAAAACTGTTAAAGGTATGGGT 58.855 37.500 0.00 0.00 0.00 4.51
3006 3105 6.308566 AGCAAAACTGTTAAAGGTATGGGTA 58.691 36.000 0.00 0.00 0.00 3.69
3007 3106 6.951778 AGCAAAACTGTTAAAGGTATGGGTAT 59.048 34.615 0.00 0.00 0.00 2.73
3008 3107 7.122204 AGCAAAACTGTTAAAGGTATGGGTATC 59.878 37.037 0.00 0.00 0.00 2.24
3026 3125 5.300286 GGGTATCTGTAATGCTGCAGAAAAT 59.700 40.000 20.43 2.83 45.86 1.82
3061 3208 4.250464 CCGTTAGGATACAAAGTTGAGCA 58.750 43.478 0.00 0.00 41.02 4.26
3099 3246 6.978659 CACCTTTATGTAGATTGCGAGAACTA 59.021 38.462 0.00 0.00 0.00 2.24
3100 3247 7.491372 CACCTTTATGTAGATTGCGAGAACTAA 59.509 37.037 0.00 0.00 0.00 2.24
3101 3248 8.038944 ACCTTTATGTAGATTGCGAGAACTAAA 58.961 33.333 0.00 0.00 0.00 1.85
3102 3249 8.879759 CCTTTATGTAGATTGCGAGAACTAAAA 58.120 33.333 0.00 0.00 0.00 1.52
3103 3250 9.690434 CTTTATGTAGATTGCGAGAACTAAAAC 57.310 33.333 0.00 0.00 0.00 2.43
3104 3251 5.756950 TGTAGATTGCGAGAACTAAAACG 57.243 39.130 0.00 0.00 0.00 3.60
3105 3252 4.624024 TGTAGATTGCGAGAACTAAAACGG 59.376 41.667 0.00 0.00 0.00 4.44
3106 3253 2.415512 AGATTGCGAGAACTAAAACGGC 59.584 45.455 0.00 0.00 0.00 5.68
3107 3254 1.584175 TTGCGAGAACTAAAACGGCA 58.416 45.000 0.00 0.00 0.00 5.69
3108 3255 1.584175 TGCGAGAACTAAAACGGCAA 58.416 45.000 0.00 0.00 0.00 4.52
3109 3256 2.147958 TGCGAGAACTAAAACGGCAAT 58.852 42.857 0.00 0.00 0.00 3.56
3110 3257 3.327626 TGCGAGAACTAAAACGGCAATA 58.672 40.909 0.00 0.00 0.00 1.90
3111 3258 3.747010 TGCGAGAACTAAAACGGCAATAA 59.253 39.130 0.00 0.00 0.00 1.40
3112 3259 4.213694 TGCGAGAACTAAAACGGCAATAAA 59.786 37.500 0.00 0.00 0.00 1.40
3113 3260 5.148568 GCGAGAACTAAAACGGCAATAAAA 58.851 37.500 0.00 0.00 0.00 1.52
3114 3261 5.798434 GCGAGAACTAAAACGGCAATAAAAT 59.202 36.000 0.00 0.00 0.00 1.82
3115 3262 6.021704 GCGAGAACTAAAACGGCAATAAAATC 60.022 38.462 0.00 0.00 0.00 2.17
3116 3263 7.018826 CGAGAACTAAAACGGCAATAAAATCA 58.981 34.615 0.00 0.00 0.00 2.57
3117 3264 7.696453 CGAGAACTAAAACGGCAATAAAATCAT 59.304 33.333 0.00 0.00 0.00 2.45
3118 3265 8.687824 AGAACTAAAACGGCAATAAAATCATG 57.312 30.769 0.00 0.00 0.00 3.07
3119 3266 8.303876 AGAACTAAAACGGCAATAAAATCATGT 58.696 29.630 0.00 0.00 0.00 3.21
3120 3267 8.825667 AACTAAAACGGCAATAAAATCATGTT 57.174 26.923 0.00 0.00 0.00 2.71
3121 3268 9.915629 AACTAAAACGGCAATAAAATCATGTTA 57.084 25.926 0.00 0.00 0.00 2.41
3122 3269 9.915629 ACTAAAACGGCAATAAAATCATGTTAA 57.084 25.926 0.00 0.00 0.00 2.01
3126 3273 9.871299 AAACGGCAATAAAATCATGTTAAAAAC 57.129 25.926 0.00 0.00 0.00 2.43
3174 3351 6.136071 GCATAGTGAAAAGCCAACGTATATG 58.864 40.000 0.00 0.00 0.00 1.78
3184 3361 2.875933 CCAACGTATATGCCCAATTCGT 59.124 45.455 0.00 0.00 0.00 3.85
3187 3364 1.870402 CGTATATGCCCAATTCGTGCA 59.130 47.619 0.00 0.00 39.68 4.57
3196 3373 3.002348 GCCCAATTCGTGCAGTAGATTAC 59.998 47.826 0.00 0.00 0.00 1.89
3204 3381 3.318017 GTGCAGTAGATTACCATAGGCG 58.682 50.000 0.00 0.00 0.00 5.52
3218 3395 0.179084 TAGGCGGCTATCTGCACAAC 60.179 55.000 15.70 0.00 46.35 3.32
3225 3402 2.291741 GGCTATCTGCACAACATTAGGC 59.708 50.000 0.00 0.00 45.15 3.93
3240 3417 4.835615 ACATTAGGCTCAGGAGGTAGTATG 59.164 45.833 0.00 0.00 0.00 2.39
3248 3425 6.211584 GGCTCAGGAGGTAGTATGATTTATGA 59.788 42.308 0.00 0.00 0.00 2.15
3277 3454 4.965119 ATTCGGTAATTTGAGGTTCAGC 57.035 40.909 0.00 0.00 0.00 4.26
3304 3481 7.173907 GCTCTAATAAATTCTGGCTGCATCTTA 59.826 37.037 0.50 0.00 0.00 2.10
3305 3482 8.978874 TCTAATAAATTCTGGCTGCATCTTAA 57.021 30.769 0.50 0.00 0.00 1.85
3306 3483 9.578576 TCTAATAAATTCTGGCTGCATCTTAAT 57.421 29.630 0.50 0.00 0.00 1.40
3309 3486 9.538508 AATAAATTCTGGCTGCATCTTAATTTC 57.461 29.630 0.50 0.00 0.00 2.17
3319 3496 6.560003 TGCATCTTAATTTCCTCTACTCCA 57.440 37.500 0.00 0.00 0.00 3.86
3320 3497 6.586344 TGCATCTTAATTTCCTCTACTCCAG 58.414 40.000 0.00 0.00 0.00 3.86
3321 3498 5.468409 GCATCTTAATTTCCTCTACTCCAGC 59.532 44.000 0.00 0.00 0.00 4.85
3323 3500 6.875972 TCTTAATTTCCTCTACTCCAGCTT 57.124 37.500 0.00 0.00 0.00 3.74
3324 3501 7.973048 TCTTAATTTCCTCTACTCCAGCTTA 57.027 36.000 0.00 0.00 0.00 3.09
3337 3514 8.424918 TCTACTCCAGCTTATTCCAAATCTAAG 58.575 37.037 0.00 0.00 0.00 2.18
3352 3531 6.436261 CAAATCTAAGTGCATCAGCTATTGG 58.564 40.000 0.00 0.00 42.74 3.16
3463 3642 2.494530 GGTTTCGGCAAGGGCAACA 61.495 57.895 0.00 0.00 43.71 3.33
3543 3722 2.440627 TGCAGCAGTTCAGGGATCATAT 59.559 45.455 0.00 0.00 0.00 1.78
3544 3723 3.647590 TGCAGCAGTTCAGGGATCATATA 59.352 43.478 0.00 0.00 0.00 0.86
3545 3724 4.287845 TGCAGCAGTTCAGGGATCATATAT 59.712 41.667 0.00 0.00 0.00 0.86
3546 3725 5.484998 TGCAGCAGTTCAGGGATCATATATA 59.515 40.000 0.00 0.00 0.00 0.86
3547 3726 6.157471 TGCAGCAGTTCAGGGATCATATATAT 59.843 38.462 0.00 0.00 0.00 0.86
3619 3804 7.176690 GGTCTCATGGAGGAAAAGAAAACAATA 59.823 37.037 0.00 0.00 0.00 1.90
3638 3823 6.544038 CAATATTCATTGTAGGATGCGACA 57.456 37.500 0.00 0.00 37.37 4.35
3655 3840 4.684242 TGCGACACACAATTATATCCGATC 59.316 41.667 0.00 0.00 0.00 3.69
3656 3841 4.923871 GCGACACACAATTATATCCGATCT 59.076 41.667 0.00 0.00 0.00 2.75
3657 3842 5.405571 GCGACACACAATTATATCCGATCTT 59.594 40.000 0.00 0.00 0.00 2.40
3658 3843 6.584942 GCGACACACAATTATATCCGATCTTA 59.415 38.462 0.00 0.00 0.00 2.10
3695 3880 7.725844 TGAAGCTGAAGACAGATGTATCCTATA 59.274 37.037 0.00 0.00 46.03 1.31
3731 3924 1.749334 GATGGTAGAGGGGGCTCACG 61.749 65.000 0.00 0.00 0.00 4.35
3737 3930 3.092511 AGGGGGCTCACGCATGAT 61.093 61.111 0.00 0.00 38.10 2.45
3738 3931 2.124151 GGGGGCTCACGCATGATT 60.124 61.111 0.00 0.00 38.10 2.57
3739 3932 1.754234 GGGGGCTCACGCATGATTT 60.754 57.895 0.00 0.00 38.10 2.17
3740 3933 1.322538 GGGGGCTCACGCATGATTTT 61.323 55.000 0.00 0.00 38.10 1.82
3741 3934 0.532115 GGGGCTCACGCATGATTTTT 59.468 50.000 0.00 0.00 38.10 1.94
3764 3958 7.706281 TTTTTACTGTTGGCATTGTTGTATG 57.294 32.000 0.00 0.00 0.00 2.39
3774 3968 5.039333 GGCATTGTTGTATGATCTTGCTTC 58.961 41.667 0.00 0.00 0.00 3.86
3799 3993 8.943002 TCCAAGTAAAATAAAGAAGAACCGATC 58.057 33.333 0.00 0.00 0.00 3.69
3818 4271 6.045318 CCGATCTTGAGTTCTACATCACATT 58.955 40.000 0.00 0.00 0.00 2.71
3822 4275 6.524734 TCTTGAGTTCTACATCACATTGTGT 58.475 36.000 16.06 0.38 34.79 3.72
3824 4277 7.598869 TCTTGAGTTCTACATCACATTGTGTAC 59.401 37.037 16.06 5.28 34.79 2.90
3838 4291 3.306917 TGTGTACGTGTATCCAACTGG 57.693 47.619 0.00 0.00 0.00 4.00
3858 4333 3.119531 TGGAACTCTTTTTATGCCATGCG 60.120 43.478 0.00 0.00 0.00 4.73
3905 4381 7.540745 CGTGACAACTTTAAATGGGAATAAAGG 59.459 37.037 9.35 0.00 41.33 3.11
3922 4398 8.914011 GGAATAAAGGTCCTTGCATAGTAAAAT 58.086 33.333 4.45 0.00 31.94 1.82
4236 10423 0.827925 TGCATCTAGCTACCTCCGGG 60.828 60.000 0.00 0.00 45.94 5.73
4342 10545 0.332632 CATCCTCCACCACCACCAAT 59.667 55.000 0.00 0.00 0.00 3.16
4347 10550 1.074727 CTCCACCACCACCAATACCAA 59.925 52.381 0.00 0.00 0.00 3.67
4349 10552 1.203001 CCACCACCACCAATACCAACT 60.203 52.381 0.00 0.00 0.00 3.16
4350 10553 2.159382 CACCACCACCAATACCAACTC 58.841 52.381 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 6.728200 TCTGAACTTGTCATAACTTTTGCAG 58.272 36.000 0.00 0.00 35.07 4.41
45 46 7.112122 TCTTTAATATGGTGTCAACATGAGCT 58.888 34.615 13.88 0.00 0.00 4.09
91 92 6.493115 TGAAACTTTCTCCATTTGAAGCCATA 59.507 34.615 3.22 0.00 0.00 2.74
95 96 6.042143 TGTTGAAACTTTCTCCATTTGAAGC 58.958 36.000 3.22 0.00 0.00 3.86
107 108 5.005682 GCACAACCTTCATGTTGAAACTTTC 59.994 40.000 10.57 0.00 46.77 2.62
124 125 1.210545 TTTCGACGAGACGCACAACC 61.211 55.000 0.00 0.00 0.00 3.77
148 149 6.621613 TGGGACGATCTTTATATCAGAATCG 58.378 40.000 0.00 0.00 36.50 3.34
153 154 5.807520 CCGATTGGGACGATCTTTATATCAG 59.192 44.000 0.00 0.00 38.47 2.90
163 165 0.032267 GACCTCCGATTGGGACGATC 59.968 60.000 0.00 0.00 40.94 3.69
170 172 2.549064 TGCATATGACCTCCGATTGG 57.451 50.000 6.97 0.00 0.00 3.16
171 173 4.336433 ACTTTTGCATATGACCTCCGATTG 59.664 41.667 6.97 0.00 0.00 2.67
176 178 5.529060 CCTCTAACTTTTGCATATGACCTCC 59.471 44.000 6.97 0.00 0.00 4.30
197 199 2.743195 CAGCGTCTTGTACTGCCTC 58.257 57.895 0.00 0.00 0.00 4.70
387 389 1.334779 CGACGAGACGAACAACCTTCT 60.335 52.381 0.00 0.00 35.09 2.85
391 393 3.168628 TTCGACGAGACGAACAACC 57.831 52.632 6.33 0.00 45.21 3.77
439 441 1.066757 GGGAGTAAACGACCTCGGATC 59.933 57.143 0.00 0.00 44.95 3.36
488 492 8.590719 AACTTTTCAAAACTGTTCGGTTTAAA 57.409 26.923 9.69 5.87 38.30 1.52
491 495 6.699895 GAACTTTTCAAAACTGTTCGGTTT 57.300 33.333 4.19 4.19 40.59 3.27
519 523 6.663523 ACCCTAGTCAAATTCGGATTGATTTT 59.336 34.615 0.00 0.00 38.89 1.82
524 528 5.897377 AAACCCTAGTCAAATTCGGATTG 57.103 39.130 0.00 0.00 0.00 2.67
535 539 2.040939 TCACGTCCAAAACCCTAGTCA 58.959 47.619 0.00 0.00 0.00 3.41
558 562 0.318955 CGTGCAAGGAAAAGGCTTGG 60.319 55.000 0.00 0.00 0.00 3.61
559 563 0.318955 CCGTGCAAGGAAAAGGCTTG 60.319 55.000 14.14 0.00 0.00 4.01
603 607 1.968050 AATCGGCCGTCACCCCTTAG 61.968 60.000 27.15 0.00 0.00 2.18
645 649 6.894339 AAAGGGTAAAAAGTGGTAGATGTG 57.106 37.500 0.00 0.00 0.00 3.21
695 700 4.303086 ACGAACAGAGAACGAGAAGAAA 57.697 40.909 0.00 0.00 0.00 2.52
709 715 3.558505 CCTGCAAATGAAGAACGAACAG 58.441 45.455 0.00 0.00 0.00 3.16
722 728 2.639327 GGTTCGCTGCCCTGCAAAT 61.639 57.895 0.00 0.00 38.41 2.32
824 833 1.068816 GCGCTTTTGTACACCCGAAAT 60.069 47.619 0.00 0.00 0.00 2.17
833 842 2.472934 CGACGGGCGCTTTTGTAC 59.527 61.111 7.64 0.00 0.00 2.90
869 879 5.517651 GTCGAAGAAGATCCGTCCGGAAA 62.518 52.174 13.06 0.00 43.95 3.13
880 890 2.531206 GCAGCTTACGTCGAAGAAGAT 58.469 47.619 5.05 0.67 38.59 2.40
884 894 1.154093 CCGCAGCTTACGTCGAAGA 60.154 57.895 5.05 0.00 0.00 2.87
894 904 4.617875 GGTGATACACCGCAGCTT 57.382 55.556 5.17 0.00 44.95 3.74
905 915 0.174845 CTTCAACGCCGAGGGTGATA 59.825 55.000 1.62 0.00 36.58 2.15
955 965 4.551388 GACGTTATCAGCTATGGGAGAAG 58.449 47.826 0.00 0.00 0.00 2.85
958 968 2.552743 TCGACGTTATCAGCTATGGGAG 59.447 50.000 0.00 0.00 0.00 4.30
959 969 2.552743 CTCGACGTTATCAGCTATGGGA 59.447 50.000 0.00 0.00 0.00 4.37
960 970 2.922758 GCTCGACGTTATCAGCTATGGG 60.923 54.545 0.00 0.00 32.11 4.00
961 971 2.320367 GCTCGACGTTATCAGCTATGG 58.680 52.381 0.00 0.00 32.11 2.74
962 972 2.287608 TGGCTCGACGTTATCAGCTATG 60.288 50.000 5.60 0.00 34.06 2.23
963 973 1.954382 TGGCTCGACGTTATCAGCTAT 59.046 47.619 5.60 0.00 34.06 2.97
964 974 1.333931 CTGGCTCGACGTTATCAGCTA 59.666 52.381 5.60 0.00 34.06 3.32
965 975 0.101399 CTGGCTCGACGTTATCAGCT 59.899 55.000 5.60 0.00 34.06 4.24
966 976 0.100682 TCTGGCTCGACGTTATCAGC 59.899 55.000 0.00 0.00 33.30 4.26
967 977 2.389059 CATCTGGCTCGACGTTATCAG 58.611 52.381 0.00 0.00 0.00 2.90
968 978 1.536072 GCATCTGGCTCGACGTTATCA 60.536 52.381 0.00 0.00 40.25 2.15
969 979 1.132588 GCATCTGGCTCGACGTTATC 58.867 55.000 0.00 0.00 40.25 1.75
970 980 0.459899 TGCATCTGGCTCGACGTTAT 59.540 50.000 0.00 0.00 45.15 1.89
971 981 0.245266 TTGCATCTGGCTCGACGTTA 59.755 50.000 0.00 0.00 45.15 3.18
972 982 0.602638 TTTGCATCTGGCTCGACGTT 60.603 50.000 0.00 0.00 45.15 3.99
973 983 1.005037 TTTGCATCTGGCTCGACGT 60.005 52.632 0.00 0.00 45.15 4.34
974 984 1.016130 AGTTTGCATCTGGCTCGACG 61.016 55.000 0.00 0.00 45.15 5.12
975 985 0.723981 GAGTTTGCATCTGGCTCGAC 59.276 55.000 0.00 0.00 45.15 4.20
976 986 0.321346 TGAGTTTGCATCTGGCTCGA 59.679 50.000 0.00 0.00 45.15 4.04
977 987 0.445436 GTGAGTTTGCATCTGGCTCG 59.555 55.000 0.00 0.00 45.15 5.03
978 988 1.527034 TGTGAGTTTGCATCTGGCTC 58.473 50.000 0.00 0.00 45.15 4.70
979 989 1.610522 GTTGTGAGTTTGCATCTGGCT 59.389 47.619 0.00 0.00 45.15 4.75
980 990 1.337703 TGTTGTGAGTTTGCATCTGGC 59.662 47.619 0.00 0.00 45.13 4.85
981 991 3.571571 CATGTTGTGAGTTTGCATCTGG 58.428 45.455 0.00 0.00 0.00 3.86
982 992 2.984471 GCATGTTGTGAGTTTGCATCTG 59.016 45.455 0.00 0.00 33.58 2.90
986 996 0.030504 CGGCATGTTGTGAGTTTGCA 59.969 50.000 0.00 0.00 35.04 4.08
989 999 1.659794 GGCGGCATGTTGTGAGTTT 59.340 52.632 3.07 0.00 0.00 2.66
993 1003 2.983030 GTGGGCGGCATGTTGTGA 60.983 61.111 12.47 0.00 0.00 3.58
1068 1084 4.444838 CGGACCATTCGGCGTGGA 62.445 66.667 21.64 3.30 39.12 4.02
1132 1148 1.079819 CGGTGCACCAGAACTCGAT 60.080 57.895 34.16 0.00 35.14 3.59
1218 1234 2.656069 CGTGGAGTTCCCCGTGGAT 61.656 63.158 0.00 0.00 41.40 3.41
1258 1274 1.072159 GGAATGCGAGGGATCCTGG 59.928 63.158 12.58 2.22 31.76 4.45
1260 1276 0.692419 ACAGGAATGCGAGGGATCCT 60.692 55.000 12.58 0.00 43.00 3.24
1263 1279 0.911769 TGAACAGGAATGCGAGGGAT 59.088 50.000 0.00 0.00 0.00 3.85
1264 1280 0.036388 GTGAACAGGAATGCGAGGGA 60.036 55.000 0.00 0.00 0.00 4.20
1265 1281 1.026718 GGTGAACAGGAATGCGAGGG 61.027 60.000 0.00 0.00 0.00 4.30
1272 1288 2.746277 GGCGCGGTGAACAGGAAT 60.746 61.111 8.83 0.00 0.00 3.01
1278 1294 3.573491 GCATAGGGCGCGGTGAAC 61.573 66.667 8.83 0.00 0.00 3.18
1306 1322 2.799371 GGCGTCGACCGAGAAGAT 59.201 61.111 10.58 0.00 39.56 2.40
1337 1377 4.193334 CGAGCCCGTGATCAGCGA 62.193 66.667 16.06 0.00 0.00 4.93
1341 1381 3.381983 ACTGCGAGCCCGTGATCA 61.382 61.111 0.00 0.00 38.24 2.92
1467 1507 0.326264 AGAGCTTGACCTCCGCAAAT 59.674 50.000 0.00 0.00 32.17 2.32
1503 1543 3.112709 GGGTGACTGACGAAGCGC 61.113 66.667 0.00 0.00 0.00 5.92
1548 1588 0.988832 TCACGCCCTCAAATAACCCT 59.011 50.000 0.00 0.00 0.00 4.34
1554 1594 1.244019 GGTTGCTCACGCCCTCAAAT 61.244 55.000 0.00 0.00 34.43 2.32
1555 1595 1.896660 GGTTGCTCACGCCCTCAAA 60.897 57.895 0.00 0.00 34.43 2.69
1556 1596 2.281484 GGTTGCTCACGCCCTCAA 60.281 61.111 0.00 0.00 34.43 3.02
1557 1597 4.329545 GGGTTGCTCACGCCCTCA 62.330 66.667 0.00 0.00 39.31 3.86
1665 1705 1.693083 CGAATTCGTGGAAGCCCGTC 61.693 60.000 19.67 0.00 34.29 4.79
1671 1711 0.736325 ACTCGGCGAATTCGTGGAAG 60.736 55.000 27.24 20.31 42.22 3.46
1680 1720 0.670546 CAGTGGTGAACTCGGCGAAT 60.671 55.000 12.13 0.00 36.83 3.34
1695 1735 2.430921 GTGCCGACGTCCTCAGTG 60.431 66.667 10.58 0.00 0.00 3.66
1717 1757 2.507992 CGAGTTGAGCCCGCTCTG 60.508 66.667 17.14 0.00 43.12 3.35
1735 1775 2.437359 CCAGCAGCCCAGCACTAC 60.437 66.667 0.00 0.00 36.85 2.73
1745 1785 3.368571 GAGGTGTTGGCCAGCAGC 61.369 66.667 36.01 36.01 44.16 5.25
1746 1786 3.052082 CGAGGTGTTGGCCAGCAG 61.052 66.667 24.00 7.38 44.16 4.24
1747 1787 4.641645 CCGAGGTGTTGGCCAGCA 62.642 66.667 19.51 19.51 44.16 4.41
1748 1788 4.329545 TCCGAGGTGTTGGCCAGC 62.330 66.667 13.50 13.50 42.00 4.85
1749 1789 2.046892 CTCCGAGGTGTTGGCCAG 60.047 66.667 5.11 0.00 0.00 4.85
1750 1790 3.636231 CCTCCGAGGTGTTGGCCA 61.636 66.667 0.00 0.00 0.00 5.36
1751 1791 4.410400 CCCTCCGAGGTGTTGGCC 62.410 72.222 13.62 0.00 31.93 5.36
1780 1820 3.715871 TGAACCGGTTCATTGAGCA 57.284 47.368 39.59 20.56 43.90 4.26
1817 1857 1.476891 TCCAGGAACGTCTGTATCTGC 59.523 52.381 3.83 0.00 33.14 4.26
1886 1926 1.374758 CCTGAGCGTCCTGAACACC 60.375 63.158 0.00 0.00 0.00 4.16
1890 1930 0.324738 ATCTCCCTGAGCGTCCTGAA 60.325 55.000 0.00 0.00 0.00 3.02
1912 1952 2.898840 CCATGGAAGAGCGCGCAT 60.899 61.111 35.10 19.25 0.00 4.73
1922 1962 1.976474 GTCAAAGCCGCCCATGGAA 60.976 57.895 15.22 0.00 0.00 3.53
1923 1963 2.361104 GTCAAAGCCGCCCATGGA 60.361 61.111 15.22 0.00 0.00 3.41
1937 1977 4.329545 GGCGGTGGCAGGAAGTCA 62.330 66.667 0.00 0.00 42.47 3.41
1952 1992 1.146263 ATAGTACTTGGGCAGCGGC 59.854 57.895 0.00 0.00 40.13 6.53
1961 2001 1.588404 CGCACGCCTTCATAGTACTTG 59.412 52.381 0.00 0.00 0.00 3.16
1986 2026 4.899239 GAGCACATCCCCGGCGAG 62.899 72.222 9.30 0.00 0.00 5.03
2042 2082 2.811317 CCTGTTGACGAGCCGAGC 60.811 66.667 1.50 0.00 0.00 5.03
2043 2083 2.125912 CCCTGTTGACGAGCCGAG 60.126 66.667 1.50 0.00 0.00 4.63
2044 2084 2.599281 TCCCTGTTGACGAGCCGA 60.599 61.111 1.50 0.00 0.00 5.54
2045 2085 2.432628 GTCCCTGTTGACGAGCCG 60.433 66.667 0.00 0.00 0.00 5.52
2054 2094 2.526046 CCCCTTGGTCGTCCCTGTT 61.526 63.158 0.00 0.00 0.00 3.16
2117 2157 4.751767 TCAAATTGGAAAGGCTGTGTTT 57.248 36.364 0.00 0.00 0.00 2.83
2118 2158 4.751767 TTCAAATTGGAAAGGCTGTGTT 57.248 36.364 0.00 0.00 0.00 3.32
2119 2159 4.961438 ATTCAAATTGGAAAGGCTGTGT 57.039 36.364 0.00 0.00 0.00 3.72
2162 2215 7.201644 CGATCTTAAAGTTTGCATGTACCTCAT 60.202 37.037 0.00 0.00 37.22 2.90
2163 2216 6.092122 CGATCTTAAAGTTTGCATGTACCTCA 59.908 38.462 0.00 0.00 0.00 3.86
2164 2217 6.478588 CGATCTTAAAGTTTGCATGTACCTC 58.521 40.000 0.00 0.00 0.00 3.85
2165 2218 5.163754 GCGATCTTAAAGTTTGCATGTACCT 60.164 40.000 0.00 0.00 0.00 3.08
2167 2220 5.627172 TGCGATCTTAAAGTTTGCATGTAC 58.373 37.500 0.00 0.00 31.30 2.90
2168 2221 5.163764 CCTGCGATCTTAAAGTTTGCATGTA 60.164 40.000 0.00 0.00 34.73 2.29
2169 2222 4.379813 CCTGCGATCTTAAAGTTTGCATGT 60.380 41.667 0.00 0.00 34.73 3.21
2170 2223 4.100529 CCTGCGATCTTAAAGTTTGCATG 58.899 43.478 0.00 0.00 34.73 4.06
2171 2224 3.428045 GCCTGCGATCTTAAAGTTTGCAT 60.428 43.478 0.00 0.00 34.73 3.96
2172 2225 2.095263 GCCTGCGATCTTAAAGTTTGCA 60.095 45.455 0.00 0.00 34.23 4.08
2173 2226 2.162408 AGCCTGCGATCTTAAAGTTTGC 59.838 45.455 0.00 0.00 0.00 3.68
2174 2227 5.545658 TTAGCCTGCGATCTTAAAGTTTG 57.454 39.130 0.00 0.00 0.00 2.93
2175 2228 5.106277 GGTTTAGCCTGCGATCTTAAAGTTT 60.106 40.000 0.00 0.00 0.00 2.66
2176 2229 4.395231 GGTTTAGCCTGCGATCTTAAAGTT 59.605 41.667 0.00 0.00 0.00 2.66
2177 2230 3.939592 GGTTTAGCCTGCGATCTTAAAGT 59.060 43.478 0.00 0.00 0.00 2.66
2178 2231 3.938963 TGGTTTAGCCTGCGATCTTAAAG 59.061 43.478 0.00 0.00 38.35 1.85
2179 2232 3.945346 TGGTTTAGCCTGCGATCTTAAA 58.055 40.909 0.00 0.00 38.35 1.52
2180 2233 3.620427 TGGTTTAGCCTGCGATCTTAA 57.380 42.857 0.00 0.00 38.35 1.85
2181 2234 3.838244 ATGGTTTAGCCTGCGATCTTA 57.162 42.857 0.00 0.00 38.35 2.10
2182 2235 2.717639 ATGGTTTAGCCTGCGATCTT 57.282 45.000 0.00 0.00 38.35 2.40
2183 2236 2.717639 AATGGTTTAGCCTGCGATCT 57.282 45.000 0.00 0.00 38.35 2.75
2184 2237 2.682856 TGAAATGGTTTAGCCTGCGATC 59.317 45.455 0.00 0.00 38.35 3.69
2185 2238 2.423538 GTGAAATGGTTTAGCCTGCGAT 59.576 45.455 0.00 0.00 38.35 4.58
2186 2239 1.810151 GTGAAATGGTTTAGCCTGCGA 59.190 47.619 0.00 0.00 38.35 5.10
2187 2240 1.135402 GGTGAAATGGTTTAGCCTGCG 60.135 52.381 0.00 0.00 38.35 5.18
2188 2241 1.135402 CGGTGAAATGGTTTAGCCTGC 60.135 52.381 0.00 0.00 38.35 4.85
2189 2242 1.135402 GCGGTGAAATGGTTTAGCCTG 60.135 52.381 0.00 0.00 38.35 4.85
2190 2243 1.173913 GCGGTGAAATGGTTTAGCCT 58.826 50.000 0.00 0.00 38.35 4.58
2191 2244 1.135402 CAGCGGTGAAATGGTTTAGCC 60.135 52.381 9.50 0.00 37.90 3.93
2192 2245 1.135402 CCAGCGGTGAAATGGTTTAGC 60.135 52.381 17.83 0.00 0.00 3.09
2193 2246 1.135402 GCCAGCGGTGAAATGGTTTAG 60.135 52.381 17.83 0.00 36.43 1.85
2194 2247 0.885196 GCCAGCGGTGAAATGGTTTA 59.115 50.000 17.83 0.00 36.43 2.01
2195 2248 0.827507 AGCCAGCGGTGAAATGGTTT 60.828 50.000 17.83 0.00 36.43 3.27
2196 2249 1.228552 AGCCAGCGGTGAAATGGTT 60.229 52.632 17.83 0.00 36.43 3.67
2197 2250 1.675641 GAGCCAGCGGTGAAATGGT 60.676 57.895 17.83 4.41 36.43 3.55
2198 2251 2.753966 CGAGCCAGCGGTGAAATGG 61.754 63.158 17.83 0.00 37.15 3.16
2199 2252 2.034879 ACGAGCCAGCGGTGAAATG 61.035 57.895 17.83 5.77 35.12 2.32
2200 2253 2.034879 CACGAGCCAGCGGTGAAAT 61.035 57.895 17.83 0.45 35.12 2.17
2201 2254 2.664851 CACGAGCCAGCGGTGAAA 60.665 61.111 17.83 0.00 35.12 2.69
2205 2258 4.927782 TTTGCACGAGCCAGCGGT 62.928 61.111 1.39 0.00 41.13 5.68
2206 2259 4.389576 GTTTGCACGAGCCAGCGG 62.390 66.667 1.39 0.00 41.13 5.52
2216 2269 2.173382 CAGCCGTAGCGTTTGCAC 59.827 61.111 0.00 0.00 46.67 4.57
2217 2270 2.773397 TAGCAGCCGTAGCGTTTGCA 62.773 55.000 13.75 0.00 46.67 4.08
2218 2271 1.632046 TTAGCAGCCGTAGCGTTTGC 61.632 55.000 0.00 6.44 46.67 3.68
2219 2272 0.094730 GTTAGCAGCCGTAGCGTTTG 59.905 55.000 0.00 0.00 46.67 2.93
2220 2273 1.017701 GGTTAGCAGCCGTAGCGTTT 61.018 55.000 0.00 0.00 46.67 3.60
2221 2274 1.447314 GGTTAGCAGCCGTAGCGTT 60.447 57.895 0.00 0.00 46.67 4.84
2222 2275 2.183555 GGTTAGCAGCCGTAGCGT 59.816 61.111 0.00 0.00 46.67 5.07
2223 2276 2.585247 GGGTTAGCAGCCGTAGCG 60.585 66.667 0.00 0.00 46.67 4.26
2224 2277 1.521681 CTGGGTTAGCAGCCGTAGC 60.522 63.158 0.00 0.00 44.44 3.58
2225 2278 0.249398 AACTGGGTTAGCAGCCGTAG 59.751 55.000 0.00 0.00 44.44 3.51
2226 2279 0.248289 GAACTGGGTTAGCAGCCGTA 59.752 55.000 0.00 0.00 44.44 4.02
2227 2280 1.003718 GAACTGGGTTAGCAGCCGT 60.004 57.895 0.00 0.00 44.44 5.68
2232 2285 2.047655 CCGCGAACTGGGTTAGCA 60.048 61.111 8.23 0.00 42.61 3.49
2261 2314 7.534723 TGTACTATGTGGGATATACAGGAAC 57.465 40.000 0.00 0.00 0.00 3.62
2263 2316 7.787904 AGTTTGTACTATGTGGGATATACAGGA 59.212 37.037 0.00 0.00 31.21 3.86
2281 2334 7.121759 TGGACATGTACTACTCCTAGTTTGTAC 59.878 40.741 10.05 12.24 37.41 2.90
2282 2335 7.177184 TGGACATGTACTACTCCTAGTTTGTA 58.823 38.462 10.05 0.00 34.79 2.41
2284 2337 6.525578 TGGACATGTACTACTCCTAGTTTG 57.474 41.667 10.05 0.00 34.79 2.93
2285 2338 9.435570 AATATGGACATGTACTACTCCTAGTTT 57.564 33.333 10.05 0.00 34.79 2.66
2286 2339 9.435570 AAATATGGACATGTACTACTCCTAGTT 57.564 33.333 10.05 0.00 34.79 2.24
2287 2340 9.435570 AAAATATGGACATGTACTACTCCTAGT 57.564 33.333 10.05 0.00 37.04 2.57
2290 2343 8.993424 AGAAAAATATGGACATGTACTACTCCT 58.007 33.333 10.05 0.00 0.00 3.69
2291 2344 9.262358 GAGAAAAATATGGACATGTACTACTCC 57.738 37.037 10.05 0.44 0.00 3.85
2292 2345 9.817809 TGAGAAAAATATGGACATGTACTACTC 57.182 33.333 10.05 6.95 0.00 2.59
2293 2346 9.823647 CTGAGAAAAATATGGACATGTACTACT 57.176 33.333 10.05 0.00 0.00 2.57
2294 2347 9.817809 TCTGAGAAAAATATGGACATGTACTAC 57.182 33.333 10.05 0.00 0.00 2.73
2311 2364 6.266168 TGAGTGCTTTGTTTTCTGAGAAAA 57.734 33.333 15.81 15.81 0.00 2.29
2327 2380 1.342074 TGCTACAGACCTTGAGTGCT 58.658 50.000 0.00 0.00 0.00 4.40
2329 2382 2.072298 GCTTGCTACAGACCTTGAGTG 58.928 52.381 0.00 0.00 0.00 3.51
2341 2415 3.941483 ACTGGTGATGTTATGCTTGCTAC 59.059 43.478 0.00 0.00 0.00 3.58
2373 2447 2.234908 CCCAGGAGGTACAAGAGTTCTG 59.765 54.545 0.00 0.00 0.00 3.02
2381 2455 0.618458 GCACATCCCAGGAGGTACAA 59.382 55.000 3.27 0.00 37.01 2.41
2393 2467 3.066342 CCTGATTCATCACAAGCACATCC 59.934 47.826 0.00 0.00 32.50 3.51
2414 2488 2.427095 AAGGCATCCTTTATTCGTTGCC 59.573 45.455 3.60 3.60 41.69 4.52
2437 2511 6.414987 GTCAATCCTTTGTTCGTTTTTCTCTG 59.585 38.462 0.00 0.00 34.32 3.35
2451 2525 3.624861 CCTCCGATTCAGTCAATCCTTTG 59.375 47.826 0.00 0.00 38.17 2.77
2453 2527 3.107601 TCCTCCGATTCAGTCAATCCTT 58.892 45.455 0.00 0.00 38.17 3.36
2459 2533 1.475403 GGAGTCCTCCGATTCAGTCA 58.525 55.000 0.41 0.00 40.36 3.41
2480 2554 1.094785 GCACATCATGGTGGTGGTAC 58.905 55.000 11.45 0.00 39.19 3.34
2492 2566 3.716195 CCCCGTCCCAGCACATCA 61.716 66.667 0.00 0.00 0.00 3.07
2515 2589 2.600731 GATCTCAGTCTCACACGGTTG 58.399 52.381 0.00 0.00 0.00 3.77
2530 2604 1.603172 CCGCGACTACAATGGGATCTC 60.603 57.143 8.23 0.00 0.00 2.75
2564 2638 4.899239 GGCGACGAGGGGCATCTG 62.899 72.222 0.00 0.00 0.00 2.90
2583 2657 0.320421 GTCGACTGGCTGGCTGTTAA 60.320 55.000 14.56 4.20 0.00 2.01
2586 2660 4.363990 CGTCGACTGGCTGGCTGT 62.364 66.667 14.70 13.38 0.00 4.40
2598 2672 3.691342 CTTCCCAGGTGCCGTCGA 61.691 66.667 0.00 0.00 0.00 4.20
2602 2676 1.073199 AAGTTCTTCCCAGGTGCCG 59.927 57.895 0.00 0.00 0.00 5.69
2604 2678 1.527433 GCCAAGTTCTTCCCAGGTGC 61.527 60.000 0.00 0.00 0.00 5.01
2610 2684 2.335712 CGGCTGCCAAGTTCTTCCC 61.336 63.158 20.29 0.00 0.00 3.97
2648 2722 1.356494 CCCCATTCCCTTCTCTCCCC 61.356 65.000 0.00 0.00 0.00 4.81
2649 2723 2.000825 GCCCCATTCCCTTCTCTCCC 62.001 65.000 0.00 0.00 0.00 4.30
2650 2724 1.281925 TGCCCCATTCCCTTCTCTCC 61.282 60.000 0.00 0.00 0.00 3.71
2651 2725 0.182299 CTGCCCCATTCCCTTCTCTC 59.818 60.000 0.00 0.00 0.00 3.20
2652 2726 0.253347 TCTGCCCCATTCCCTTCTCT 60.253 55.000 0.00 0.00 0.00 3.10
2679 2753 3.853698 TAAACCACAGTGCCGGGGC 62.854 63.158 2.18 1.86 42.35 5.80
2680 2754 0.610785 ATTAAACCACAGTGCCGGGG 60.611 55.000 2.18 0.00 0.00 5.73
2681 2755 0.525761 CATTAAACCACAGTGCCGGG 59.474 55.000 2.18 0.00 0.00 5.73
2682 2756 1.468520 CTCATTAAACCACAGTGCCGG 59.531 52.381 0.00 0.00 0.00 6.13
2683 2757 1.135689 GCTCATTAAACCACAGTGCCG 60.136 52.381 0.00 0.00 0.00 5.69
2684 2758 1.135689 CGCTCATTAAACCACAGTGCC 60.136 52.381 0.00 0.00 0.00 5.01
2685 2759 1.135689 CCGCTCATTAAACCACAGTGC 60.136 52.381 0.00 0.00 0.00 4.40
2686 2760 2.422597 TCCGCTCATTAAACCACAGTG 58.577 47.619 0.00 0.00 0.00 3.66
2687 2761 2.851263 TCCGCTCATTAAACCACAGT 57.149 45.000 0.00 0.00 0.00 3.55
2688 2762 4.497473 TTTTCCGCTCATTAAACCACAG 57.503 40.909 0.00 0.00 0.00 3.66
2689 2763 4.520874 TGATTTTCCGCTCATTAAACCACA 59.479 37.500 0.00 0.00 0.00 4.17
2690 2764 4.857037 GTGATTTTCCGCTCATTAAACCAC 59.143 41.667 0.00 0.00 0.00 4.16
2691 2765 4.764823 AGTGATTTTCCGCTCATTAAACCA 59.235 37.500 0.00 0.00 0.00 3.67
2692 2766 5.310720 AGTGATTTTCCGCTCATTAAACC 57.689 39.130 0.00 0.00 0.00 3.27
2693 2767 6.093633 ACCTAGTGATTTTCCGCTCATTAAAC 59.906 38.462 0.00 0.00 0.00 2.01
2694 2768 6.177610 ACCTAGTGATTTTCCGCTCATTAAA 58.822 36.000 0.00 0.00 0.00 1.52
2695 2769 5.741011 ACCTAGTGATTTTCCGCTCATTAA 58.259 37.500 0.00 0.00 0.00 1.40
2696 2770 5.353394 ACCTAGTGATTTTCCGCTCATTA 57.647 39.130 0.00 0.00 0.00 1.90
2697 2771 4.222124 ACCTAGTGATTTTCCGCTCATT 57.778 40.909 0.00 0.00 0.00 2.57
2698 2772 3.914426 ACCTAGTGATTTTCCGCTCAT 57.086 42.857 0.00 0.00 0.00 2.90
2699 2773 3.695830 AACCTAGTGATTTTCCGCTCA 57.304 42.857 0.00 0.00 0.00 4.26
2700 2774 3.374367 GGAAACCTAGTGATTTTCCGCTC 59.626 47.826 6.64 0.00 39.10 5.03
2701 2775 3.344515 GGAAACCTAGTGATTTTCCGCT 58.655 45.455 6.64 0.00 39.10 5.52
2702 2776 3.759527 GGAAACCTAGTGATTTTCCGC 57.240 47.619 6.64 0.00 39.10 5.54
2704 2778 5.805728 TCTCAGGAAACCTAGTGATTTTCC 58.194 41.667 11.69 11.69 45.95 3.13
2705 2779 6.128145 GCTTCTCAGGAAACCTAGTGATTTTC 60.128 42.308 0.00 0.00 29.64 2.29
2706 2780 5.707764 GCTTCTCAGGAAACCTAGTGATTTT 59.292 40.000 0.00 0.00 29.64 1.82
2707 2781 5.013599 AGCTTCTCAGGAAACCTAGTGATTT 59.986 40.000 0.00 0.00 29.64 2.17
2708 2782 4.534103 AGCTTCTCAGGAAACCTAGTGATT 59.466 41.667 0.00 0.00 29.64 2.57
2709 2783 4.081198 CAGCTTCTCAGGAAACCTAGTGAT 60.081 45.833 0.00 0.00 29.64 3.06
2710 2784 3.259374 CAGCTTCTCAGGAAACCTAGTGA 59.741 47.826 0.00 0.00 29.64 3.41
2711 2785 3.007398 ACAGCTTCTCAGGAAACCTAGTG 59.993 47.826 0.00 0.00 29.64 2.74
2712 2786 3.243724 ACAGCTTCTCAGGAAACCTAGT 58.756 45.455 0.00 0.00 29.64 2.57
2729 2803 5.424757 TCCGCCCATATACAATATAACAGC 58.575 41.667 0.00 0.00 0.00 4.40
2775 2874 1.128809 TTTCACTGGGACGGGCCTAA 61.129 55.000 0.84 0.00 40.47 2.69
2777 2876 2.852075 TTTCACTGGGACGGGCCT 60.852 61.111 0.84 0.00 40.47 5.19
2785 2884 0.603707 TTCGCTGCTCTTTCACTGGG 60.604 55.000 0.00 0.00 0.00 4.45
2790 2889 2.657757 CGCGTTCGCTGCTCTTTCA 61.658 57.895 14.92 0.00 0.00 2.69
2798 2897 2.513065 ATTTGCCTTCGCGTTCGCTG 62.513 55.000 14.92 8.75 38.08 5.18
2834 2933 1.153628 GCACTAACCAGGCGATCGT 60.154 57.895 17.81 0.00 0.00 3.73
2868 2967 1.227823 CCCCGCGATGCAATCCTTA 60.228 57.895 8.23 0.00 41.39 2.69
2878 2977 4.162690 GTGAAGGCTCCCCGCGAT 62.163 66.667 8.23 0.00 40.44 4.58
2889 2988 0.310854 GCGGGTGAAAGTTGTGAAGG 59.689 55.000 0.00 0.00 0.00 3.46
2893 2992 1.010125 CGTGCGGGTGAAAGTTGTG 60.010 57.895 0.00 0.00 0.00 3.33
2894 2993 0.745128 TTCGTGCGGGTGAAAGTTGT 60.745 50.000 0.00 0.00 0.00 3.32
2895 2994 0.591170 ATTCGTGCGGGTGAAAGTTG 59.409 50.000 0.00 0.00 0.00 3.16
2896 2995 2.172851 TATTCGTGCGGGTGAAAGTT 57.827 45.000 0.00 0.00 0.00 2.66
2897 2996 2.277084 GATATTCGTGCGGGTGAAAGT 58.723 47.619 0.00 0.00 0.00 2.66
2898 2997 1.597663 GGATATTCGTGCGGGTGAAAG 59.402 52.381 0.00 0.00 0.00 2.62
2899 2998 1.066071 TGGATATTCGTGCGGGTGAAA 60.066 47.619 0.00 0.00 0.00 2.69
2900 2999 0.537653 TGGATATTCGTGCGGGTGAA 59.462 50.000 0.00 0.00 0.00 3.18
2901 3000 0.756294 ATGGATATTCGTGCGGGTGA 59.244 50.000 0.00 0.00 0.00 4.02
2902 3001 0.867746 CATGGATATTCGTGCGGGTG 59.132 55.000 0.00 0.00 0.00 4.61
2903 3002 0.756294 TCATGGATATTCGTGCGGGT 59.244 50.000 0.00 0.00 0.00 5.28
2904 3003 1.877637 TTCATGGATATTCGTGCGGG 58.122 50.000 0.00 0.00 0.00 6.13
2905 3004 3.961477 TTTTCATGGATATTCGTGCGG 57.039 42.857 0.00 0.00 0.00 5.69
2906 3005 4.908736 ACTTTTTCATGGATATTCGTGCG 58.091 39.130 0.00 0.00 0.00 5.34
2907 3006 5.879237 TGACTTTTTCATGGATATTCGTGC 58.121 37.500 0.00 0.00 0.00 5.34
2908 3007 8.183536 TCATTGACTTTTTCATGGATATTCGTG 58.816 33.333 0.00 0.00 32.84 4.35
2909 3008 8.184192 GTCATTGACTTTTTCATGGATATTCGT 58.816 33.333 9.59 0.00 32.84 3.85
2910 3009 8.400947 AGTCATTGACTTTTTCATGGATATTCG 58.599 33.333 13.61 0.00 40.28 3.34
2926 3025 7.551585 CACATCTAAGTCCTAAGTCATTGACT 58.448 38.462 13.61 13.61 45.64 3.41
2927 3026 6.256757 GCACATCTAAGTCCTAAGTCATTGAC 59.743 42.308 8.82 8.82 0.00 3.18
2928 3027 6.070824 TGCACATCTAAGTCCTAAGTCATTGA 60.071 38.462 0.00 0.00 0.00 2.57
2929 3028 6.108687 TGCACATCTAAGTCCTAAGTCATTG 58.891 40.000 0.00 0.00 0.00 2.82
2930 3029 6.299805 TGCACATCTAAGTCCTAAGTCATT 57.700 37.500 0.00 0.00 0.00 2.57
2931 3030 5.939764 TGCACATCTAAGTCCTAAGTCAT 57.060 39.130 0.00 0.00 0.00 3.06
2932 3031 5.738619 TTGCACATCTAAGTCCTAAGTCA 57.261 39.130 0.00 0.00 0.00 3.41
2933 3032 7.493367 AGTATTGCACATCTAAGTCCTAAGTC 58.507 38.462 0.00 0.00 0.00 3.01
2934 3033 7.425224 AGTATTGCACATCTAAGTCCTAAGT 57.575 36.000 0.00 0.00 0.00 2.24
2935 3034 9.988815 ATAAGTATTGCACATCTAAGTCCTAAG 57.011 33.333 0.00 0.00 0.00 2.18
2977 3076 7.328493 CCATACCTTTAACAGTTTTGCTAAAGC 59.672 37.037 0.00 0.00 39.76 3.51
2978 3077 7.812669 CCCATACCTTTAACAGTTTTGCTAAAG 59.187 37.037 0.00 0.00 40.33 1.85
2979 3078 7.288158 ACCCATACCTTTAACAGTTTTGCTAAA 59.712 33.333 0.00 0.00 0.00 1.85
2980 3079 6.778559 ACCCATACCTTTAACAGTTTTGCTAA 59.221 34.615 0.00 0.00 0.00 3.09
2981 3080 6.308566 ACCCATACCTTTAACAGTTTTGCTA 58.691 36.000 0.00 0.00 0.00 3.49
2982 3081 5.144832 ACCCATACCTTTAACAGTTTTGCT 58.855 37.500 0.00 0.00 0.00 3.91
2983 3082 5.462530 ACCCATACCTTTAACAGTTTTGC 57.537 39.130 0.00 0.00 0.00 3.68
2984 3083 8.458843 CAGATACCCATACCTTTAACAGTTTTG 58.541 37.037 0.00 0.00 0.00 2.44
2985 3084 8.168058 ACAGATACCCATACCTTTAACAGTTTT 58.832 33.333 0.00 0.00 0.00 2.43
2986 3085 7.696017 ACAGATACCCATACCTTTAACAGTTT 58.304 34.615 0.00 0.00 0.00 2.66
2987 3086 7.266905 ACAGATACCCATACCTTTAACAGTT 57.733 36.000 0.00 0.00 0.00 3.16
2988 3087 6.886178 ACAGATACCCATACCTTTAACAGT 57.114 37.500 0.00 0.00 0.00 3.55
2989 3088 9.273016 CATTACAGATACCCATACCTTTAACAG 57.727 37.037 0.00 0.00 0.00 3.16
2990 3089 7.717875 GCATTACAGATACCCATACCTTTAACA 59.282 37.037 0.00 0.00 0.00 2.41
2991 3090 7.937394 AGCATTACAGATACCCATACCTTTAAC 59.063 37.037 0.00 0.00 0.00 2.01
2992 3091 7.936847 CAGCATTACAGATACCCATACCTTTAA 59.063 37.037 0.00 0.00 0.00 1.52
2993 3092 7.450074 CAGCATTACAGATACCCATACCTTTA 58.550 38.462 0.00 0.00 0.00 1.85
2994 3093 6.299141 CAGCATTACAGATACCCATACCTTT 58.701 40.000 0.00 0.00 0.00 3.11
2995 3094 5.746065 GCAGCATTACAGATACCCATACCTT 60.746 44.000 0.00 0.00 0.00 3.50
2996 3095 4.263068 GCAGCATTACAGATACCCATACCT 60.263 45.833 0.00 0.00 0.00 3.08
2997 3096 4.003648 GCAGCATTACAGATACCCATACC 58.996 47.826 0.00 0.00 0.00 2.73
2998 3097 4.641396 TGCAGCATTACAGATACCCATAC 58.359 43.478 0.00 0.00 0.00 2.39
2999 3098 4.592778 TCTGCAGCATTACAGATACCCATA 59.407 41.667 9.47 0.00 37.99 2.74
3000 3099 3.392285 TCTGCAGCATTACAGATACCCAT 59.608 43.478 9.47 0.00 37.99 4.00
3001 3100 2.771372 TCTGCAGCATTACAGATACCCA 59.229 45.455 9.47 0.00 37.99 4.51
3002 3101 3.475566 TCTGCAGCATTACAGATACCC 57.524 47.619 9.47 0.00 37.99 3.69
3003 3102 5.818136 TTTTCTGCAGCATTACAGATACC 57.182 39.130 9.47 0.00 42.26 2.73
3004 3103 9.604626 GATAATTTTCTGCAGCATTACAGATAC 57.395 33.333 9.47 0.00 42.26 2.24
3005 3104 9.341078 TGATAATTTTCTGCAGCATTACAGATA 57.659 29.630 9.47 0.00 42.26 1.98
3006 3105 8.229253 TGATAATTTTCTGCAGCATTACAGAT 57.771 30.769 9.47 0.00 42.26 2.90
3007 3106 7.628769 TGATAATTTTCTGCAGCATTACAGA 57.371 32.000 9.47 0.00 41.06 3.41
3008 3107 8.692110 TTTGATAATTTTCTGCAGCATTACAG 57.308 30.769 9.47 0.00 35.15 2.74
3052 3151 1.913778 TCATGCATGGTGCTCAACTT 58.086 45.000 25.97 0.00 45.31 2.66
3084 3231 3.615496 GCCGTTTTAGTTCTCGCAATCTA 59.385 43.478 0.00 0.00 0.00 1.98
3100 3247 9.871299 GTTTTTAACATGATTTTATTGCCGTTT 57.129 25.926 0.00 0.00 0.00 3.60
3101 3248 9.046296 TGTTTTTAACATGATTTTATTGCCGTT 57.954 25.926 0.00 0.00 36.25 4.44
3102 3249 8.594881 TGTTTTTAACATGATTTTATTGCCGT 57.405 26.923 0.00 0.00 36.25 5.68
3103 3250 9.869844 TTTGTTTTTAACATGATTTTATTGCCG 57.130 25.926 0.00 0.00 41.79 5.69
3110 3257 9.467796 TTCCCCTTTTGTTTTTAACATGATTTT 57.532 25.926 0.00 0.00 41.79 1.82
3111 3258 9.639563 ATTCCCCTTTTGTTTTTAACATGATTT 57.360 25.926 0.00 0.00 41.79 2.17
3112 3259 9.065798 CATTCCCCTTTTGTTTTTAACATGATT 57.934 29.630 0.00 0.00 41.79 2.57
3113 3260 8.435982 TCATTCCCCTTTTGTTTTTAACATGAT 58.564 29.630 0.00 0.00 41.79 2.45
3114 3261 7.796054 TCATTCCCCTTTTGTTTTTAACATGA 58.204 30.769 0.00 0.00 41.79 3.07
3115 3262 8.443953 TTCATTCCCCTTTTGTTTTTAACATG 57.556 30.769 0.00 0.00 41.79 3.21
3116 3263 7.228507 GCTTCATTCCCCTTTTGTTTTTAACAT 59.771 33.333 0.00 0.00 41.79 2.71
3117 3264 6.540551 GCTTCATTCCCCTTTTGTTTTTAACA 59.459 34.615 0.00 0.00 40.21 2.41
3118 3265 6.765989 AGCTTCATTCCCCTTTTGTTTTTAAC 59.234 34.615 0.00 0.00 0.00 2.01
3119 3266 6.894682 AGCTTCATTCCCCTTTTGTTTTTAA 58.105 32.000 0.00 0.00 0.00 1.52
3120 3267 6.463755 GGAGCTTCATTCCCCTTTTGTTTTTA 60.464 38.462 0.00 0.00 0.00 1.52
3121 3268 5.368145 GAGCTTCATTCCCCTTTTGTTTTT 58.632 37.500 0.00 0.00 0.00 1.94
3122 3269 4.202357 GGAGCTTCATTCCCCTTTTGTTTT 60.202 41.667 0.00 0.00 0.00 2.43
3123 3270 3.324846 GGAGCTTCATTCCCCTTTTGTTT 59.675 43.478 0.00 0.00 0.00 2.83
3124 3271 2.899900 GGAGCTTCATTCCCCTTTTGTT 59.100 45.455 0.00 0.00 0.00 2.83
3125 3272 2.529632 GGAGCTTCATTCCCCTTTTGT 58.470 47.619 0.00 0.00 0.00 2.83
3174 3351 1.668419 ATCTACTGCACGAATTGGGC 58.332 50.000 0.00 0.00 0.00 5.36
3184 3361 2.299013 CCGCCTATGGTAATCTACTGCA 59.701 50.000 0.00 0.00 0.00 4.41
3187 3364 2.890814 AGCCGCCTATGGTAATCTACT 58.109 47.619 0.00 0.00 0.00 2.57
3196 3373 0.671781 GTGCAGATAGCCGCCTATGG 60.672 60.000 0.00 0.00 44.83 2.74
3204 3381 2.291741 GCCTAATGTTGTGCAGATAGCC 59.708 50.000 0.00 0.00 44.83 3.93
3218 3395 5.080337 TCATACTACCTCCTGAGCCTAATG 58.920 45.833 0.00 0.00 0.00 1.90
3253 3430 6.255950 GCTGAACCTCAAATTACCGAATTAC 58.744 40.000 0.00 0.00 34.01 1.89
3256 3433 3.374058 CGCTGAACCTCAAATTACCGAAT 59.626 43.478 0.00 0.00 0.00 3.34
3258 3435 2.343101 CGCTGAACCTCAAATTACCGA 58.657 47.619 0.00 0.00 0.00 4.69
3259 3436 1.202031 GCGCTGAACCTCAAATTACCG 60.202 52.381 0.00 0.00 0.00 4.02
3261 3438 3.003480 AGAGCGCTGAACCTCAAATTAC 58.997 45.455 18.48 0.00 0.00 1.89
3262 3439 3.334583 AGAGCGCTGAACCTCAAATTA 57.665 42.857 18.48 0.00 0.00 1.40
3263 3440 2.191128 AGAGCGCTGAACCTCAAATT 57.809 45.000 18.48 0.00 0.00 1.82
3277 3454 3.561310 TGCAGCCAGAATTTATTAGAGCG 59.439 43.478 0.00 0.00 0.00 5.03
3304 3481 6.158695 TGGAATAAGCTGGAGTAGAGGAAATT 59.841 38.462 0.00 0.00 0.00 1.82
3305 3482 5.667626 TGGAATAAGCTGGAGTAGAGGAAAT 59.332 40.000 0.00 0.00 0.00 2.17
3306 3483 5.030147 TGGAATAAGCTGGAGTAGAGGAAA 58.970 41.667 0.00 0.00 0.00 3.13
3307 3484 4.620723 TGGAATAAGCTGGAGTAGAGGAA 58.379 43.478 0.00 0.00 0.00 3.36
3308 3485 4.265856 TGGAATAAGCTGGAGTAGAGGA 57.734 45.455 0.00 0.00 0.00 3.71
3309 3486 5.359194 TTTGGAATAAGCTGGAGTAGAGG 57.641 43.478 0.00 0.00 0.00 3.69
3319 3496 6.830324 TGATGCACTTAGATTTGGAATAAGCT 59.170 34.615 0.00 0.00 31.12 3.74
3320 3497 7.031226 TGATGCACTTAGATTTGGAATAAGC 57.969 36.000 0.00 0.00 31.12 3.09
3321 3498 7.013083 AGCTGATGCACTTAGATTTGGAATAAG 59.987 37.037 0.00 0.00 42.74 1.73
3323 3500 6.359804 AGCTGATGCACTTAGATTTGGAATA 58.640 36.000 0.00 0.00 42.74 1.75
3324 3501 5.198965 AGCTGATGCACTTAGATTTGGAAT 58.801 37.500 0.00 0.00 42.74 3.01
3337 3514 1.945394 CCTGACCAATAGCTGATGCAC 59.055 52.381 0.00 0.00 42.74 4.57
3352 3531 1.029681 AGGAAAAACGTTGGCCTGAC 58.970 50.000 13.98 1.48 0.00 3.51
3387 3566 0.107017 CCTTCTCCATGCACCCGATT 60.107 55.000 0.00 0.00 0.00 3.34
3447 3626 0.539438 AGATGTTGCCCTTGCCGAAA 60.539 50.000 0.00 0.00 36.33 3.46
3456 3635 1.817099 CAGCTCGGAGATGTTGCCC 60.817 63.158 14.85 0.00 33.89 5.36
3463 3642 1.205893 GGACTTGAACAGCTCGGAGAT 59.794 52.381 9.69 0.00 33.89 2.75
3525 3704 7.984859 TCATATATATGATCCCTGAACTGCT 57.015 36.000 19.44 0.00 37.76 4.24
3543 3722 7.646884 TCTCCATCTCCAGCTTCTATCATATA 58.353 38.462 0.00 0.00 0.00 0.86
3544 3723 6.501237 TCTCCATCTCCAGCTTCTATCATAT 58.499 40.000 0.00 0.00 0.00 1.78
3545 3724 5.896963 TCTCCATCTCCAGCTTCTATCATA 58.103 41.667 0.00 0.00 0.00 2.15
3546 3725 4.749820 TCTCCATCTCCAGCTTCTATCAT 58.250 43.478 0.00 0.00 0.00 2.45
3547 3726 4.190370 TCTCCATCTCCAGCTTCTATCA 57.810 45.455 0.00 0.00 0.00 2.15
3562 3747 3.652055 AGTACTGGATCAGCTTCTCCAT 58.348 45.455 13.19 7.59 40.66 3.41
3619 3804 3.623060 GTGTGTCGCATCCTACAATGAAT 59.377 43.478 0.00 0.00 0.00 2.57
3629 3814 4.143115 CGGATATAATTGTGTGTCGCATCC 60.143 45.833 0.00 0.00 0.00 3.51
3667 3852 5.395103 GGATACATCTGTCTTCAGCTTCACT 60.395 44.000 0.00 0.00 41.10 3.41
3695 3880 9.126151 CTCTACCATCTATTACACCGATCATAT 57.874 37.037 0.00 0.00 0.00 1.78
3702 3890 3.510360 CCCCTCTACCATCTATTACACCG 59.490 52.174 0.00 0.00 0.00 4.94
3740 3933 7.492524 TCATACAACAATGCCAACAGTAAAAA 58.507 30.769 0.00 0.00 0.00 1.94
3741 3934 7.043961 TCATACAACAATGCCAACAGTAAAA 57.956 32.000 0.00 0.00 0.00 1.52
3742 3935 6.641169 TCATACAACAATGCCAACAGTAAA 57.359 33.333 0.00 0.00 0.00 2.01
3774 3968 8.947115 AGATCGGTTCTTCTTTATTTTACTTGG 58.053 33.333 0.00 0.00 0.00 3.61
3799 3993 6.791887 ACACAATGTGATGTAGAACTCAAG 57.208 37.500 21.34 0.00 36.96 3.02
3838 4291 3.853671 CACGCATGGCATAAAAAGAGTTC 59.146 43.478 0.00 0.00 0.00 3.01
3858 4333 4.504461 ACGATCTTCATAAAGACGCATCAC 59.496 41.667 0.00 0.00 44.13 3.06
3865 4340 6.952935 AGTTGTCACGATCTTCATAAAGAC 57.047 37.500 0.00 0.00 44.13 3.01
3894 4369 3.756082 ATGCAAGGACCTTTATTCCCA 57.244 42.857 3.21 0.00 33.01 4.37
3922 4398 2.107378 TGTGAAGTTGGATACCTTGGCA 59.893 45.455 0.00 0.00 0.00 4.92
4236 10423 1.207089 TGGTGGACATGATCTCGGTTC 59.793 52.381 0.00 0.00 0.00 3.62
4342 10545 1.022735 GCGATCCGAGAGAGTTGGTA 58.977 55.000 0.00 0.00 0.00 3.25
4347 10550 2.122167 GGTGGCGATCCGAGAGAGT 61.122 63.158 0.00 0.00 34.14 3.24
4349 10552 2.833582 GGGTGGCGATCCGAGAGA 60.834 66.667 0.00 0.00 34.14 3.10
4350 10553 3.917760 GGGGTGGCGATCCGAGAG 61.918 72.222 0.00 0.00 34.14 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.