Multiple sequence alignment - TraesCS1B01G003400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G003400 chr1B 100.000 3158 0 0 1 3158 2111187 2108030 0.000000e+00 5832.0
1 TraesCS1B01G003400 chr1B 94.323 1286 66 5 1218 2497 2064587 2063303 0.000000e+00 1964.0
2 TraesCS1B01G003400 chr1B 94.163 1285 69 4 1218 2497 2087214 2085931 0.000000e+00 1953.0
3 TraesCS1B01G003400 chr1B 90.887 1229 76 8 1 1203 2088416 2087198 0.000000e+00 1616.0
4 TraesCS1B01G003400 chr1B 90.992 1210 73 9 20 1203 2065770 2064571 0.000000e+00 1598.0
5 TraesCS1B01G003400 chr1B 80.118 679 114 18 1225 1896 2307585 2306921 1.320000e-133 486.0
6 TraesCS1B01G003400 chr1B 94.534 311 16 1 2848 3158 2085935 2085626 2.200000e-131 479.0
7 TraesCS1B01G003400 chr1B 94.212 311 17 1 2848 3158 2063307 2062998 1.030000e-129 473.0
8 TraesCS1B01G003400 chr1A 87.203 1305 132 19 1219 2497 1657308 1658603 0.000000e+00 1452.0
9 TraesCS1B01G003400 chr1A 82.125 1007 103 26 252 1203 1656339 1657323 0.000000e+00 791.0
10 TraesCS1B01G003400 chr1A 84.123 359 55 1 1221 1577 2391690 2392048 2.330000e-91 346.0
11 TraesCS1B01G003400 chr1A 83.713 307 41 8 2847 3148 1658598 1658900 6.670000e-72 281.0
12 TraesCS1B01G003400 chr6D 93.855 358 22 0 2495 2852 25849675 25849318 9.970000e-150 540.0
13 TraesCS1B01G003400 chr3A 79.301 744 134 15 1224 1963 737797208 737797935 1.310000e-138 503.0
14 TraesCS1B01G003400 chr3A 80.335 239 42 4 950 1184 737796964 737797201 3.240000e-40 176.0
15 TraesCS1B01G003400 chr3B 83.204 387 57 5 1224 1604 815476710 815477094 6.480000e-92 348.0
16 TraesCS1B01G003400 chr3B 82.164 342 55 5 1241 1578 801304672 801305011 3.990000e-74 289.0
17 TraesCS1B01G003400 chr3B 79.835 243 43 4 950 1187 815476464 815476705 4.190000e-39 172.0
18 TraesCS1B01G003400 chr3D 82.451 359 59 3 1229 1584 596671567 596671210 8.510000e-81 311.0
19 TraesCS1B01G003400 chr2A 94.578 166 8 1 2692 2856 313773226 313773061 4.040000e-64 255.0
20 TraesCS1B01G003400 chr2A 92.857 126 8 1 2496 2621 313773367 313773243 6.960000e-42 182.0
21 TraesCS1B01G003400 chr5A 85.802 162 16 5 2685 2842 555335198 555335040 7.010000e-37 165.0
22 TraesCS1B01G003400 chr2B 77.844 167 36 1 1732 1898 40908446 40908281 5.570000e-18 102.0
23 TraesCS1B01G003400 chr2B 100.000 29 0 0 2824 2852 439899570 439899542 2.000000e-03 54.7
24 TraesCS1B01G003400 chr2D 77.246 167 37 1 1732 1898 25175622 25175457 2.590000e-16 97.1
25 TraesCS1B01G003400 chr4B 76.374 182 33 7 2058 2237 604001938 604002111 4.340000e-14 89.8
26 TraesCS1B01G003400 chr5B 90.909 44 2 2 2817 2859 605788149 605788107 1.220000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G003400 chr1B 2108030 2111187 3157 True 5832.000000 5832 100.000000 1 3158 1 chr1B.!!$R1 3157
1 TraesCS1B01G003400 chr1B 2085626 2088416 2790 True 1349.333333 1953 93.194667 1 3158 3 chr1B.!!$R4 3157
2 TraesCS1B01G003400 chr1B 2062998 2065770 2772 True 1345.000000 1964 93.175667 20 3158 3 chr1B.!!$R3 3138
3 TraesCS1B01G003400 chr1B 2306921 2307585 664 True 486.000000 486 80.118000 1225 1896 1 chr1B.!!$R2 671
4 TraesCS1B01G003400 chr1A 1656339 1658900 2561 False 841.333333 1452 84.347000 252 3148 3 chr1A.!!$F2 2896
5 TraesCS1B01G003400 chr3A 737796964 737797935 971 False 339.500000 503 79.818000 950 1963 2 chr3A.!!$F1 1013
6 TraesCS1B01G003400 chr3B 815476464 815477094 630 False 260.000000 348 81.519500 950 1604 2 chr3B.!!$F2 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
435 439 0.179171 CACTCGCTACCATTCGTCGT 60.179 55.0 0.0 0.0 0.0 4.34 F
1746 1843 0.396435 TTGCGGACTTCACTGGACAT 59.604 50.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 2096 0.464373 CCCCTGCACAATAGATGCGT 60.464 55.0 0.00 0.00 46.49 5.24 R
2686 2787 0.035247 TACTCATGTGCATGCAGCCA 60.035 50.0 23.41 17.37 44.83 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 4.911053 TGCACGACTAAAATTTCGTTTGT 58.089 34.783 0.26 0.00 46.04 2.83
89 90 7.317177 CACGACTAAAATTTCGTTTGTCAAAC 58.683 34.615 16.99 16.99 46.04 2.93
98 99 8.496872 AATTTCGTTTGTCAAACTAATTACCG 57.503 30.769 22.69 9.84 39.23 4.02
124 125 9.099454 GAGACACACAATTATAAACTAGAAGGG 57.901 37.037 0.00 0.00 0.00 3.95
134 135 4.453177 AAACTAGAAGGGAGTTAGTCGC 57.547 45.455 0.00 0.00 36.10 5.19
141 142 0.971447 GGGAGTTAGTCGCTGTCCCT 60.971 60.000 12.45 0.00 43.28 4.20
142 143 0.456628 GGAGTTAGTCGCTGTCCCTC 59.543 60.000 0.00 0.00 0.00 4.30
180 181 5.328691 CAGTAAGCTCTGAGTAAGAAGTCG 58.671 45.833 6.53 0.00 37.61 4.18
255 256 7.881775 ACTTGTGCTAGGAAATTAATTAGGG 57.118 36.000 0.01 0.00 0.00 3.53
256 257 7.410991 ACTTGTGCTAGGAAATTAATTAGGGT 58.589 34.615 0.01 0.00 0.00 4.34
433 437 2.288969 GCACTCGCTACCATTCGTC 58.711 57.895 0.00 0.00 34.30 4.20
435 439 0.179171 CACTCGCTACCATTCGTCGT 60.179 55.000 0.00 0.00 0.00 4.34
437 441 0.924363 CTCGCTACCATTCGTCGTCG 60.924 60.000 0.00 0.00 38.55 5.12
440 444 1.432251 CTACCATTCGTCGTCGGCT 59.568 57.895 1.55 0.00 37.69 5.52
463 467 1.404843 CCGGGTAGAGGAAGAAGAGG 58.595 60.000 0.00 0.00 0.00 3.69
469 473 3.383505 GGTAGAGGAAGAAGAGGAGAAGC 59.616 52.174 0.00 0.00 0.00 3.86
470 474 3.473113 AGAGGAAGAAGAGGAGAAGCT 57.527 47.619 0.00 0.00 0.00 3.74
487 491 1.801332 CTGAGCAGCAGCAACATCC 59.199 57.895 3.17 0.00 45.49 3.51
540 544 2.411069 GGAAAAGCGAAGTCTTCCGTAC 59.589 50.000 7.01 0.00 0.00 3.67
623 654 8.790718 TCACTAGGTAGGCGTTTCTTAATATAG 58.209 37.037 0.00 0.00 0.00 1.31
694 745 4.074970 ACAGCTTGAGAAATCATCCGTTT 58.925 39.130 0.00 0.00 0.00 3.60
702 753 6.472887 TGAGAAATCATCCGTTTTCCTAGTT 58.527 36.000 0.00 0.00 33.18 2.24
751 802 1.220749 GCCTCGCCAGGTAATCACA 59.779 57.895 0.00 0.00 42.74 3.58
782 833 4.104738 TCCTTGACCCAGAAACTTCTTCAT 59.895 41.667 0.00 0.00 34.74 2.57
783 834 4.829492 CCTTGACCCAGAAACTTCTTCATT 59.171 41.667 0.00 0.00 34.74 2.57
798 849 8.924511 ACTTCTTCATTTCTAATTTGTCCTCA 57.075 30.769 0.00 0.00 0.00 3.86
816 867 0.530650 CATTGCCTACGCTCCGTCAT 60.531 55.000 0.00 0.00 41.54 3.06
821 872 1.066605 GCCTACGCTCCGTCATCTTAA 59.933 52.381 0.00 0.00 41.54 1.85
830 881 4.462133 CTCCGTCATCTTAAGGAGGTAGA 58.538 47.826 1.85 0.00 44.78 2.59
831 882 4.205587 TCCGTCATCTTAAGGAGGTAGAC 58.794 47.826 1.85 2.06 0.00 2.59
846 897 6.099269 AGGAGGTAGACTGTGTGTTTCTTTTA 59.901 38.462 0.00 0.00 0.00 1.52
868 919 5.695851 ACTAATCAAAACTGCAACCAGAG 57.304 39.130 0.00 0.00 41.77 3.35
869 920 5.133221 ACTAATCAAAACTGCAACCAGAGT 58.867 37.500 0.00 0.00 41.77 3.24
932 983 3.165071 AGCAAACAACTTTCCCTATGGG 58.835 45.455 0.00 0.00 46.11 4.00
953 1004 3.565516 GAAATGAAGAAGGGCGACAAAC 58.434 45.455 0.00 0.00 0.00 2.93
1027 1083 3.990092 TGCCGATCTATTATCACACCAC 58.010 45.455 0.00 0.00 0.00 4.16
1110 1166 8.131100 TCACTTCTCAAAGAAATCACAAATGAC 58.869 33.333 0.00 0.00 35.47 3.06
1124 1180 3.582208 ACAAATGACTTCTCTCCTGAGCT 59.418 43.478 0.00 0.00 40.03 4.09
1128 1184 3.439154 TGACTTCTCTCCTGAGCTGAAT 58.561 45.455 0.00 0.00 40.03 2.57
1145 1201 2.976185 TGAATATTGGCTCCGGTGGATA 59.024 45.455 0.00 0.00 0.00 2.59
1192 1254 1.915489 TCTGAGCTGCCTTGGGATTTA 59.085 47.619 0.00 0.00 0.00 1.40
1193 1255 2.308570 TCTGAGCTGCCTTGGGATTTAA 59.691 45.455 0.00 0.00 0.00 1.52
1194 1256 3.053395 TCTGAGCTGCCTTGGGATTTAAT 60.053 43.478 0.00 0.00 0.00 1.40
1195 1257 3.290710 TGAGCTGCCTTGGGATTTAATC 58.709 45.455 0.00 0.00 0.00 1.75
1196 1258 3.290710 GAGCTGCCTTGGGATTTAATCA 58.709 45.455 7.29 0.00 0.00 2.57
1197 1259 3.701040 GAGCTGCCTTGGGATTTAATCAA 59.299 43.478 7.29 0.00 0.00 2.57
1198 1260 4.095946 AGCTGCCTTGGGATTTAATCAAA 58.904 39.130 7.29 0.41 0.00 2.69
1199 1261 4.081476 AGCTGCCTTGGGATTTAATCAAAC 60.081 41.667 7.29 0.00 0.00 2.93
1200 1262 4.081476 GCTGCCTTGGGATTTAATCAAACT 60.081 41.667 7.29 0.00 0.00 2.66
1201 1263 5.569428 GCTGCCTTGGGATTTAATCAAACTT 60.569 40.000 7.29 0.00 0.00 2.66
1202 1264 6.432403 TGCCTTGGGATTTAATCAAACTTT 57.568 33.333 7.29 0.00 0.00 2.66
1203 1265 6.836242 TGCCTTGGGATTTAATCAAACTTTT 58.164 32.000 7.29 0.00 0.00 2.27
1204 1266 7.286313 TGCCTTGGGATTTAATCAAACTTTTT 58.714 30.769 7.29 0.00 0.00 1.94
1270 1337 3.138884 TGTTGCTGACAAGGCATCTTA 57.861 42.857 0.00 0.00 39.54 2.10
1420 1487 4.210331 GGTTTCTGGGATATTGTGCTGAT 58.790 43.478 0.00 0.00 0.00 2.90
1521 1588 2.176889 TCCTAAAGGGAGTCTTCGTGG 58.823 52.381 0.00 0.00 39.58 4.94
1652 1735 9.832445 ATCTTCTTTTACATAATGACCACGTAT 57.168 29.630 0.00 0.00 0.00 3.06
1746 1843 0.396435 TTGCGGACTTCACTGGACAT 59.604 50.000 0.00 0.00 0.00 3.06
1789 1886 4.772100 AGGAATTTGTCAGGGGTTACATTG 59.228 41.667 0.00 0.00 0.00 2.82
1926 2023 3.680458 GCAGAGCCAGACTTTTACTGTAC 59.320 47.826 0.00 0.00 34.04 2.90
2023 2120 3.254166 GCATCTATTGTGCAGGGGTTATG 59.746 47.826 0.00 0.00 42.08 1.90
2040 2137 2.443887 ATGTTGCACCAGAATGTTGC 57.556 45.000 0.00 0.00 0.00 4.17
2073 2170 3.123804 CACACACCGGCTTGATATCTAC 58.876 50.000 0.00 0.00 0.00 2.59
2119 2216 1.638529 ACTGACAGGAGAGAGGTTGG 58.361 55.000 7.51 0.00 0.00 3.77
2216 2315 8.515414 ACCAATACATTACTTGCTTCTCTTTTC 58.485 33.333 0.00 0.00 0.00 2.29
2389 2489 9.511144 CAATAGTTTAAAATACCCGAAATGGTC 57.489 33.333 0.00 0.00 39.91 4.02
2509 2610 5.971763 AGTATATAGTACTACCTCGGTCCG 58.028 45.833 4.39 4.39 0.00 4.79
2510 2611 2.557920 ATAGTACTACCTCGGTCCGG 57.442 55.000 12.29 0.00 0.00 5.14
2511 2612 0.469917 TAGTACTACCTCGGTCCGGG 59.530 60.000 12.29 8.10 0.00 5.73
2512 2613 1.077429 GTACTACCTCGGTCCGGGT 60.077 63.158 22.78 22.78 39.40 5.28
2513 2614 0.681243 GTACTACCTCGGTCCGGGTT 60.681 60.000 23.91 8.10 37.07 4.11
2514 2615 0.039618 TACTACCTCGGTCCGGGTTT 59.960 55.000 23.91 15.92 37.07 3.27
2515 2616 0.039618 ACTACCTCGGTCCGGGTTTA 59.960 55.000 23.91 9.14 37.07 2.01
2516 2617 1.185315 CTACCTCGGTCCGGGTTTAA 58.815 55.000 23.91 10.06 37.07 1.52
2517 2618 1.550072 CTACCTCGGTCCGGGTTTAAA 59.450 52.381 23.91 9.77 37.07 1.52
2518 2619 0.322648 ACCTCGGTCCGGGTTTAAAG 59.677 55.000 10.99 0.00 30.80 1.85
2519 2620 0.392060 CCTCGGTCCGGGTTTAAAGG 60.392 60.000 10.99 4.39 0.00 3.11
2520 2621 1.003476 TCGGTCCGGGTTTAAAGGC 60.003 57.895 12.29 0.00 0.00 4.35
2521 2622 2.042259 CGGTCCGGGTTTAAAGGCC 61.042 63.158 2.34 0.00 0.00 5.19
2522 2623 1.679977 GGTCCGGGTTTAAAGGCCC 60.680 63.158 0.00 4.15 41.45 5.80
2523 2624 1.679977 GTCCGGGTTTAAAGGCCCC 60.680 63.158 0.00 5.49 41.85 5.80
2524 2625 2.363276 CCGGGTTTAAAGGCCCCC 60.363 66.667 0.00 0.00 41.85 5.40
2538 2639 3.361977 CCCCCAGACCAAAACGCG 61.362 66.667 3.53 3.53 0.00 6.01
2539 2640 2.593436 CCCCAGACCAAAACGCGT 60.593 61.111 5.58 5.58 0.00 6.01
2540 2641 2.637025 CCCAGACCAAAACGCGTG 59.363 61.111 14.98 1.65 0.00 5.34
2541 2642 2.184167 CCCAGACCAAAACGCGTGT 61.184 57.895 14.98 3.14 0.00 4.49
2542 2643 0.881159 CCCAGACCAAAACGCGTGTA 60.881 55.000 14.98 0.00 0.00 2.90
2543 2644 0.233848 CCAGACCAAAACGCGTGTAC 59.766 55.000 14.98 0.00 0.00 2.90
2544 2645 0.233848 CAGACCAAAACGCGTGTACC 59.766 55.000 14.98 0.00 0.00 3.34
2545 2646 0.179078 AGACCAAAACGCGTGTACCA 60.179 50.000 14.98 0.00 0.00 3.25
2546 2647 0.656785 GACCAAAACGCGTGTACCAA 59.343 50.000 14.98 0.00 0.00 3.67
2547 2648 0.658897 ACCAAAACGCGTGTACCAAG 59.341 50.000 14.98 0.39 0.00 3.61
2548 2649 0.938713 CCAAAACGCGTGTACCAAGA 59.061 50.000 14.98 0.00 0.00 3.02
2549 2650 1.333435 CCAAAACGCGTGTACCAAGAC 60.333 52.381 14.98 0.00 0.00 3.01
2550 2651 0.578211 AAAACGCGTGTACCAAGACG 59.422 50.000 14.98 0.00 44.68 4.18
2554 2655 4.164252 CGTGTACCAAGACGCCTC 57.836 61.111 0.00 0.00 35.46 4.70
2555 2656 1.287815 CGTGTACCAAGACGCCTCA 59.712 57.895 0.00 0.00 35.46 3.86
2556 2657 0.732880 CGTGTACCAAGACGCCTCAG 60.733 60.000 0.00 0.00 35.46 3.35
2557 2658 0.317479 GTGTACCAAGACGCCTCAGT 59.683 55.000 0.00 0.00 0.00 3.41
2558 2659 0.317160 TGTACCAAGACGCCTCAGTG 59.683 55.000 0.00 0.00 0.00 3.66
2559 2660 1.014564 GTACCAAGACGCCTCAGTGC 61.015 60.000 0.00 0.00 0.00 4.40
2560 2661 1.468506 TACCAAGACGCCTCAGTGCA 61.469 55.000 0.00 0.00 0.00 4.57
2561 2662 1.376424 CCAAGACGCCTCAGTGCAT 60.376 57.895 0.00 0.00 0.00 3.96
2562 2663 0.108186 CCAAGACGCCTCAGTGCATA 60.108 55.000 0.00 0.00 0.00 3.14
2563 2664 1.284657 CAAGACGCCTCAGTGCATAG 58.715 55.000 0.00 0.00 0.00 2.23
2564 2665 0.898320 AAGACGCCTCAGTGCATAGT 59.102 50.000 0.00 0.00 0.00 2.12
2565 2666 1.763968 AGACGCCTCAGTGCATAGTA 58.236 50.000 0.00 0.00 0.00 1.82
2566 2667 2.100197 AGACGCCTCAGTGCATAGTAA 58.900 47.619 0.00 0.00 0.00 2.24
2567 2668 2.695666 AGACGCCTCAGTGCATAGTAAT 59.304 45.455 0.00 0.00 0.00 1.89
2568 2669 3.053455 GACGCCTCAGTGCATAGTAATC 58.947 50.000 0.00 0.00 0.00 1.75
2569 2670 2.695666 ACGCCTCAGTGCATAGTAATCT 59.304 45.455 0.00 0.00 0.00 2.40
2570 2671 3.055591 CGCCTCAGTGCATAGTAATCTG 58.944 50.000 0.00 0.00 0.00 2.90
2571 2672 2.805099 GCCTCAGTGCATAGTAATCTGC 59.195 50.000 0.00 0.00 38.87 4.26
2572 2673 3.742327 GCCTCAGTGCATAGTAATCTGCA 60.742 47.826 0.00 0.00 45.60 4.41
2586 2687 2.533266 TCTGCAAGAGTCTGACCAAC 57.467 50.000 3.76 0.00 38.67 3.77
2587 2688 1.070758 TCTGCAAGAGTCTGACCAACC 59.929 52.381 3.76 0.00 38.67 3.77
2588 2689 0.836606 TGCAAGAGTCTGACCAACCA 59.163 50.000 3.76 0.00 0.00 3.67
2589 2690 1.421268 TGCAAGAGTCTGACCAACCAT 59.579 47.619 3.76 0.00 0.00 3.55
2590 2691 2.637382 TGCAAGAGTCTGACCAACCATA 59.363 45.455 3.76 0.00 0.00 2.74
2591 2692 3.265791 GCAAGAGTCTGACCAACCATAG 58.734 50.000 3.76 0.00 0.00 2.23
2592 2693 3.307059 GCAAGAGTCTGACCAACCATAGT 60.307 47.826 3.76 0.00 0.00 2.12
2593 2694 4.248859 CAAGAGTCTGACCAACCATAGTG 58.751 47.826 3.76 0.00 0.00 2.74
2594 2695 3.511477 AGAGTCTGACCAACCATAGTGT 58.489 45.455 3.76 0.00 0.00 3.55
2595 2696 3.259374 AGAGTCTGACCAACCATAGTGTG 59.741 47.826 3.76 0.00 0.00 3.82
2596 2697 2.972713 AGTCTGACCAACCATAGTGTGT 59.027 45.455 3.76 0.00 0.00 3.72
2597 2698 4.157246 AGTCTGACCAACCATAGTGTGTA 58.843 43.478 3.76 0.00 0.00 2.90
2598 2699 4.591498 AGTCTGACCAACCATAGTGTGTAA 59.409 41.667 3.76 0.00 0.00 2.41
2599 2700 5.071250 AGTCTGACCAACCATAGTGTGTAAA 59.929 40.000 3.76 0.00 0.00 2.01
2600 2701 5.761234 GTCTGACCAACCATAGTGTGTAAAA 59.239 40.000 0.00 0.00 0.00 1.52
2601 2702 6.430000 GTCTGACCAACCATAGTGTGTAAAAT 59.570 38.462 0.00 0.00 0.00 1.82
2602 2703 6.653320 TCTGACCAACCATAGTGTGTAAAATC 59.347 38.462 0.00 0.00 0.00 2.17
2603 2704 5.708230 TGACCAACCATAGTGTGTAAAATCC 59.292 40.000 0.00 0.00 0.00 3.01
2604 2705 5.014202 ACCAACCATAGTGTGTAAAATCCC 58.986 41.667 0.00 0.00 0.00 3.85
2605 2706 5.222254 ACCAACCATAGTGTGTAAAATCCCT 60.222 40.000 0.00 0.00 0.00 4.20
2606 2707 5.357032 CCAACCATAGTGTGTAAAATCCCTC 59.643 44.000 0.00 0.00 0.00 4.30
2607 2708 6.180472 CAACCATAGTGTGTAAAATCCCTCT 58.820 40.000 0.00 0.00 0.00 3.69
2608 2709 5.745227 ACCATAGTGTGTAAAATCCCTCTG 58.255 41.667 0.00 0.00 0.00 3.35
2609 2710 5.250774 ACCATAGTGTGTAAAATCCCTCTGT 59.749 40.000 0.00 0.00 0.00 3.41
2610 2711 5.817816 CCATAGTGTGTAAAATCCCTCTGTC 59.182 44.000 0.00 0.00 0.00 3.51
2611 2712 6.352222 CCATAGTGTGTAAAATCCCTCTGTCT 60.352 42.308 0.00 0.00 0.00 3.41
2612 2713 5.153950 AGTGTGTAAAATCCCTCTGTCTC 57.846 43.478 0.00 0.00 0.00 3.36
2613 2714 4.020128 AGTGTGTAAAATCCCTCTGTCTCC 60.020 45.833 0.00 0.00 0.00 3.71
2614 2715 4.020128 GTGTGTAAAATCCCTCTGTCTCCT 60.020 45.833 0.00 0.00 0.00 3.69
2615 2716 4.597507 TGTGTAAAATCCCTCTGTCTCCTT 59.402 41.667 0.00 0.00 0.00 3.36
2616 2717 4.938226 GTGTAAAATCCCTCTGTCTCCTTG 59.062 45.833 0.00 0.00 0.00 3.61
2617 2718 4.597507 TGTAAAATCCCTCTGTCTCCTTGT 59.402 41.667 0.00 0.00 0.00 3.16
2618 2719 3.990959 AAATCCCTCTGTCTCCTTGTC 57.009 47.619 0.00 0.00 0.00 3.18
2619 2720 1.872773 ATCCCTCTGTCTCCTTGTCC 58.127 55.000 0.00 0.00 0.00 4.02
2620 2721 0.252284 TCCCTCTGTCTCCTTGTCCC 60.252 60.000 0.00 0.00 0.00 4.46
2621 2722 0.545309 CCCTCTGTCTCCTTGTCCCA 60.545 60.000 0.00 0.00 0.00 4.37
2622 2723 1.577736 CCTCTGTCTCCTTGTCCCAT 58.422 55.000 0.00 0.00 0.00 4.00
2623 2724 1.912043 CCTCTGTCTCCTTGTCCCATT 59.088 52.381 0.00 0.00 0.00 3.16
2624 2725 2.355513 CCTCTGTCTCCTTGTCCCATTG 60.356 54.545 0.00 0.00 0.00 2.82
2625 2726 2.568956 CTCTGTCTCCTTGTCCCATTGA 59.431 50.000 0.00 0.00 0.00 2.57
2626 2727 3.184628 TCTGTCTCCTTGTCCCATTGAT 58.815 45.455 0.00 0.00 0.00 2.57
2627 2728 3.588842 TCTGTCTCCTTGTCCCATTGATT 59.411 43.478 0.00 0.00 0.00 2.57
2628 2729 4.782691 TCTGTCTCCTTGTCCCATTGATTA 59.217 41.667 0.00 0.00 0.00 1.75
2629 2730 5.429762 TCTGTCTCCTTGTCCCATTGATTAT 59.570 40.000 0.00 0.00 0.00 1.28
2630 2731 6.069440 TCTGTCTCCTTGTCCCATTGATTATT 60.069 38.462 0.00 0.00 0.00 1.40
2631 2732 6.122277 TGTCTCCTTGTCCCATTGATTATTC 58.878 40.000 0.00 0.00 0.00 1.75
2632 2733 5.237344 GTCTCCTTGTCCCATTGATTATTCG 59.763 44.000 0.00 0.00 0.00 3.34
2633 2734 5.104527 TCTCCTTGTCCCATTGATTATTCGT 60.105 40.000 0.00 0.00 0.00 3.85
2634 2735 5.505780 TCCTTGTCCCATTGATTATTCGTT 58.494 37.500 0.00 0.00 0.00 3.85
2635 2736 5.949354 TCCTTGTCCCATTGATTATTCGTTT 59.051 36.000 0.00 0.00 0.00 3.60
2636 2737 6.035843 CCTTGTCCCATTGATTATTCGTTTG 58.964 40.000 0.00 0.00 0.00 2.93
2637 2738 4.992688 TGTCCCATTGATTATTCGTTTGC 58.007 39.130 0.00 0.00 0.00 3.68
2638 2739 4.704540 TGTCCCATTGATTATTCGTTTGCT 59.295 37.500 0.00 0.00 0.00 3.91
2639 2740 5.163663 TGTCCCATTGATTATTCGTTTGCTC 60.164 40.000 0.00 0.00 0.00 4.26
2640 2741 4.338118 TCCCATTGATTATTCGTTTGCTCC 59.662 41.667 0.00 0.00 0.00 4.70
2641 2742 4.339247 CCCATTGATTATTCGTTTGCTCCT 59.661 41.667 0.00 0.00 0.00 3.69
2642 2743 5.506317 CCCATTGATTATTCGTTTGCTCCTC 60.506 44.000 0.00 0.00 0.00 3.71
2643 2744 5.506317 CCATTGATTATTCGTTTGCTCCTCC 60.506 44.000 0.00 0.00 0.00 4.30
2644 2745 4.487714 TGATTATTCGTTTGCTCCTCCT 57.512 40.909 0.00 0.00 0.00 3.69
2645 2746 4.191544 TGATTATTCGTTTGCTCCTCCTG 58.808 43.478 0.00 0.00 0.00 3.86
2646 2747 3.695830 TTATTCGTTTGCTCCTCCTGT 57.304 42.857 0.00 0.00 0.00 4.00
2647 2748 2.568623 ATTCGTTTGCTCCTCCTGTT 57.431 45.000 0.00 0.00 0.00 3.16
2648 2749 3.695830 ATTCGTTTGCTCCTCCTGTTA 57.304 42.857 0.00 0.00 0.00 2.41
2649 2750 3.478857 TTCGTTTGCTCCTCCTGTTAA 57.521 42.857 0.00 0.00 0.00 2.01
2650 2751 3.695830 TCGTTTGCTCCTCCTGTTAAT 57.304 42.857 0.00 0.00 0.00 1.40
2651 2752 4.015872 TCGTTTGCTCCTCCTGTTAATT 57.984 40.909 0.00 0.00 0.00 1.40
2652 2753 4.394729 TCGTTTGCTCCTCCTGTTAATTT 58.605 39.130 0.00 0.00 0.00 1.82
2653 2754 4.454504 TCGTTTGCTCCTCCTGTTAATTTC 59.545 41.667 0.00 0.00 0.00 2.17
2654 2755 4.379499 CGTTTGCTCCTCCTGTTAATTTCC 60.379 45.833 0.00 0.00 0.00 3.13
2655 2756 4.657814 TTGCTCCTCCTGTTAATTTCCT 57.342 40.909 0.00 0.00 0.00 3.36
2656 2757 3.955471 TGCTCCTCCTGTTAATTTCCTG 58.045 45.455 0.00 0.00 0.00 3.86
2657 2758 2.685388 GCTCCTCCTGTTAATTTCCTGC 59.315 50.000 0.00 0.00 0.00 4.85
2658 2759 2.939103 CTCCTCCTGTTAATTTCCTGCG 59.061 50.000 0.00 0.00 0.00 5.18
2659 2760 2.017049 CCTCCTGTTAATTTCCTGCGG 58.983 52.381 0.00 0.00 0.00 5.69
2660 2761 1.401905 CTCCTGTTAATTTCCTGCGGC 59.598 52.381 0.00 0.00 0.00 6.53
2661 2762 0.455815 CCTGTTAATTTCCTGCGGCC 59.544 55.000 0.00 0.00 0.00 6.13
2662 2763 0.098728 CTGTTAATTTCCTGCGGCCG 59.901 55.000 24.05 24.05 0.00 6.13
2663 2764 1.226575 GTTAATTTCCTGCGGCCGC 60.227 57.895 42.35 42.35 42.35 6.53
2664 2765 1.377987 TTAATTTCCTGCGGCCGCT 60.378 52.632 45.79 28.94 42.51 5.52
2665 2766 1.373590 TTAATTTCCTGCGGCCGCTC 61.374 55.000 45.79 23.37 42.51 5.03
2674 2775 2.103538 CGGCCGCTCGCTAAACTA 59.896 61.111 14.67 0.00 37.74 2.24
2675 2776 1.517694 CGGCCGCTCGCTAAACTAA 60.518 57.895 14.67 0.00 37.74 2.24
2676 2777 1.079875 CGGCCGCTCGCTAAACTAAA 61.080 55.000 14.67 0.00 37.74 1.85
2677 2778 1.081094 GGCCGCTCGCTAAACTAAAA 58.919 50.000 0.00 0.00 37.74 1.52
2678 2779 1.062148 GGCCGCTCGCTAAACTAAAAG 59.938 52.381 0.00 0.00 37.74 2.27
2679 2780 1.997606 GCCGCTCGCTAAACTAAAAGA 59.002 47.619 0.00 0.00 0.00 2.52
2680 2781 2.414138 GCCGCTCGCTAAACTAAAAGAA 59.586 45.455 0.00 0.00 0.00 2.52
2681 2782 3.063588 GCCGCTCGCTAAACTAAAAGAAT 59.936 43.478 0.00 0.00 0.00 2.40
2682 2783 4.578601 CCGCTCGCTAAACTAAAAGAATG 58.421 43.478 0.00 0.00 0.00 2.67
2683 2784 4.022475 CGCTCGCTAAACTAAAAGAATGC 58.978 43.478 0.00 0.00 0.00 3.56
2684 2785 4.435518 CGCTCGCTAAACTAAAAGAATGCA 60.436 41.667 0.00 0.00 0.00 3.96
2685 2786 5.573146 GCTCGCTAAACTAAAAGAATGCAT 58.427 37.500 0.00 0.00 0.00 3.96
2686 2787 6.030228 GCTCGCTAAACTAAAAGAATGCATT 58.970 36.000 12.83 12.83 0.00 3.56
2687 2788 6.021153 GCTCGCTAAACTAAAAGAATGCATTG 60.021 38.462 18.59 3.47 0.00 2.82
2688 2789 6.321717 TCGCTAAACTAAAAGAATGCATTGG 58.678 36.000 18.59 0.00 0.00 3.16
2689 2790 5.004726 CGCTAAACTAAAAGAATGCATTGGC 59.995 40.000 18.59 2.99 41.68 4.52
2690 2791 6.101997 GCTAAACTAAAAGAATGCATTGGCT 58.898 36.000 18.59 5.67 41.91 4.75
2691 2792 6.035327 GCTAAACTAAAAGAATGCATTGGCTG 59.965 38.462 18.59 4.59 41.91 4.85
2701 2802 2.676744 CATTGGCTGCATGCACATG 58.323 52.632 18.46 12.50 45.15 3.21
2702 2803 0.174617 CATTGGCTGCATGCACATGA 59.825 50.000 18.46 3.80 45.15 3.07
2703 2804 0.459899 ATTGGCTGCATGCACATGAG 59.540 50.000 18.46 8.01 45.15 2.90
2704 2805 0.896479 TTGGCTGCATGCACATGAGT 60.896 50.000 18.46 0.00 45.15 3.41
2705 2806 0.035247 TGGCTGCATGCACATGAGTA 60.035 50.000 18.46 0.00 45.15 2.59
2706 2807 1.315690 GGCTGCATGCACATGAGTAT 58.684 50.000 18.46 0.00 45.15 2.12
2707 2808 1.266175 GGCTGCATGCACATGAGTATC 59.734 52.381 18.46 0.00 45.15 2.24
2708 2809 2.219458 GCTGCATGCACATGAGTATCT 58.781 47.619 18.46 0.00 41.20 1.98
2709 2810 2.031944 GCTGCATGCACATGAGTATCTG 60.032 50.000 18.46 3.34 41.20 2.90
2710 2811 1.944709 TGCATGCACATGAGTATCTGC 59.055 47.619 18.46 0.00 41.20 4.26
2711 2812 2.219458 GCATGCACATGAGTATCTGCT 58.781 47.619 14.21 0.00 41.20 4.24
2712 2813 2.223611 GCATGCACATGAGTATCTGCTC 59.776 50.000 14.21 0.00 41.20 4.26
2714 2815 2.897436 TGCACATGAGTATCTGCTCAC 58.103 47.619 0.00 0.00 46.72 3.51
2715 2816 2.208431 GCACATGAGTATCTGCTCACC 58.792 52.381 0.00 0.00 46.72 4.02
2716 2817 2.158986 GCACATGAGTATCTGCTCACCT 60.159 50.000 0.00 0.00 46.72 4.00
2717 2818 3.068732 GCACATGAGTATCTGCTCACCTA 59.931 47.826 0.00 0.00 46.72 3.08
2718 2819 4.795635 GCACATGAGTATCTGCTCACCTAG 60.796 50.000 0.00 0.00 46.72 3.02
2719 2820 4.340666 CACATGAGTATCTGCTCACCTAGT 59.659 45.833 0.00 0.00 46.72 2.57
2720 2821 4.959210 ACATGAGTATCTGCTCACCTAGTT 59.041 41.667 0.00 0.00 46.72 2.24
2721 2822 4.991153 TGAGTATCTGCTCACCTAGTTG 57.009 45.455 0.00 0.00 40.23 3.16
2722 2823 3.131223 TGAGTATCTGCTCACCTAGTTGC 59.869 47.826 0.00 0.00 40.23 4.17
2723 2824 2.099921 AGTATCTGCTCACCTAGTTGCG 59.900 50.000 0.00 0.00 0.00 4.85
2724 2825 0.898320 ATCTGCTCACCTAGTTGCGT 59.102 50.000 0.00 0.00 0.00 5.24
2725 2826 0.038251 TCTGCTCACCTAGTTGCGTG 60.038 55.000 0.00 0.00 0.00 5.34
2726 2827 1.630244 CTGCTCACCTAGTTGCGTGC 61.630 60.000 0.00 0.00 0.00 5.34
2727 2828 2.391389 GCTCACCTAGTTGCGTGCC 61.391 63.158 0.00 0.00 0.00 5.01
2728 2829 1.293498 CTCACCTAGTTGCGTGCCT 59.707 57.895 0.00 0.00 0.00 4.75
2729 2830 0.320771 CTCACCTAGTTGCGTGCCTT 60.321 55.000 0.00 0.00 0.00 4.35
2730 2831 0.320421 TCACCTAGTTGCGTGCCTTC 60.320 55.000 0.00 0.00 0.00 3.46
2731 2832 1.374252 ACCTAGTTGCGTGCCTTCG 60.374 57.895 0.00 0.00 0.00 3.79
2732 2833 1.374252 CCTAGTTGCGTGCCTTCGT 60.374 57.895 0.00 0.00 0.00 3.85
2733 2834 0.108992 CCTAGTTGCGTGCCTTCGTA 60.109 55.000 0.00 0.00 0.00 3.43
2734 2835 1.269166 CTAGTTGCGTGCCTTCGTAG 58.731 55.000 0.00 0.00 0.00 3.51
2735 2836 0.108992 TAGTTGCGTGCCTTCGTAGG 60.109 55.000 3.26 3.26 45.02 3.18
2747 2848 3.378339 CCTTCGTAGGCAATAACTACCG 58.622 50.000 0.00 0.00 38.00 4.02
2748 2849 2.497107 TCGTAGGCAATAACTACCGC 57.503 50.000 0.00 0.00 38.00 5.68
2749 2850 1.126079 CGTAGGCAATAACTACCGCG 58.874 55.000 0.00 0.00 38.00 6.46
2750 2851 1.268692 CGTAGGCAATAACTACCGCGA 60.269 52.381 8.23 0.00 38.00 5.87
2751 2852 2.391879 GTAGGCAATAACTACCGCGAG 58.608 52.381 8.23 0.00 35.83 5.03
2752 2853 1.108776 AGGCAATAACTACCGCGAGA 58.891 50.000 8.23 0.00 0.00 4.04
2753 2854 1.479323 AGGCAATAACTACCGCGAGAA 59.521 47.619 8.23 0.00 0.00 2.87
2754 2855 1.591619 GGCAATAACTACCGCGAGAAC 59.408 52.381 8.23 0.00 0.00 3.01
2755 2856 1.591619 GCAATAACTACCGCGAGAACC 59.408 52.381 8.23 0.00 0.00 3.62
2756 2857 2.883574 CAATAACTACCGCGAGAACCA 58.116 47.619 8.23 0.00 0.00 3.67
2757 2858 2.858344 CAATAACTACCGCGAGAACCAG 59.142 50.000 8.23 0.00 0.00 4.00
2758 2859 0.171903 TAACTACCGCGAGAACCAGC 59.828 55.000 8.23 0.00 0.00 4.85
2759 2860 2.202756 CTACCGCGAGAACCAGCC 60.203 66.667 8.23 0.00 0.00 4.85
2760 2861 2.992689 TACCGCGAGAACCAGCCA 60.993 61.111 8.23 0.00 0.00 4.75
2761 2862 2.501223 CTACCGCGAGAACCAGCCAA 62.501 60.000 8.23 0.00 0.00 4.52
2762 2863 1.895020 TACCGCGAGAACCAGCCAAT 61.895 55.000 8.23 0.00 0.00 3.16
2763 2864 1.153449 CCGCGAGAACCAGCCAATA 60.153 57.895 8.23 0.00 0.00 1.90
2764 2865 1.154205 CCGCGAGAACCAGCCAATAG 61.154 60.000 8.23 0.00 0.00 1.73
2765 2866 0.179111 CGCGAGAACCAGCCAATAGA 60.179 55.000 0.00 0.00 0.00 1.98
2766 2867 1.739035 CGCGAGAACCAGCCAATAGAA 60.739 52.381 0.00 0.00 0.00 2.10
2767 2868 2.356135 GCGAGAACCAGCCAATAGAAA 58.644 47.619 0.00 0.00 0.00 2.52
2768 2869 2.747446 GCGAGAACCAGCCAATAGAAAA 59.253 45.455 0.00 0.00 0.00 2.29
2769 2870 3.181506 GCGAGAACCAGCCAATAGAAAAG 60.182 47.826 0.00 0.00 0.00 2.27
2770 2871 3.375299 CGAGAACCAGCCAATAGAAAAGG 59.625 47.826 0.00 0.00 0.00 3.11
2771 2872 4.336280 GAGAACCAGCCAATAGAAAAGGT 58.664 43.478 0.00 0.00 0.00 3.50
2772 2873 4.336280 AGAACCAGCCAATAGAAAAGGTC 58.664 43.478 0.00 0.00 0.00 3.85
2773 2874 2.711542 ACCAGCCAATAGAAAAGGTCG 58.288 47.619 0.00 0.00 0.00 4.79
2774 2875 2.304761 ACCAGCCAATAGAAAAGGTCGA 59.695 45.455 0.00 0.00 0.00 4.20
2775 2876 2.939103 CCAGCCAATAGAAAAGGTCGAG 59.061 50.000 0.00 0.00 0.00 4.04
2776 2877 2.352960 CAGCCAATAGAAAAGGTCGAGC 59.647 50.000 6.48 6.48 0.00 5.03
2777 2878 1.327764 GCCAATAGAAAAGGTCGAGCG 59.672 52.381 9.28 0.00 0.00 5.03
2778 2879 2.618053 CCAATAGAAAAGGTCGAGCGT 58.382 47.619 9.28 2.41 0.00 5.07
2779 2880 3.000727 CCAATAGAAAAGGTCGAGCGTT 58.999 45.455 10.03 10.03 0.00 4.84
2780 2881 3.435671 CCAATAGAAAAGGTCGAGCGTTT 59.564 43.478 24.80 24.80 36.83 3.60
2781 2882 4.083484 CCAATAGAAAAGGTCGAGCGTTTT 60.083 41.667 25.18 21.36 44.69 2.43
2782 2883 4.663636 ATAGAAAAGGTCGAGCGTTTTG 57.336 40.909 25.18 0.00 42.86 2.44
2783 2884 1.002792 AGAAAAGGTCGAGCGTTTTGC 60.003 47.619 25.18 15.59 42.86 3.68
2793 2894 4.054825 CGTTTTGCATGCGGCCCT 62.055 61.111 14.09 0.00 43.89 5.19
2794 2895 2.125952 GTTTTGCATGCGGCCCTC 60.126 61.111 14.09 0.00 43.89 4.30
2795 2896 2.283101 TTTTGCATGCGGCCCTCT 60.283 55.556 14.09 0.00 43.89 3.69
2796 2897 1.001517 TTTTGCATGCGGCCCTCTA 60.002 52.632 14.09 0.00 43.89 2.43
2797 2898 0.610509 TTTTGCATGCGGCCCTCTAA 60.611 50.000 14.09 0.00 43.89 2.10
2798 2899 0.395586 TTTGCATGCGGCCCTCTAAT 60.396 50.000 14.09 0.00 43.89 1.73
2799 2900 0.395586 TTGCATGCGGCCCTCTAATT 60.396 50.000 14.09 0.00 43.89 1.40
2800 2901 0.819259 TGCATGCGGCCCTCTAATTC 60.819 55.000 14.09 0.00 43.89 2.17
2801 2902 0.819259 GCATGCGGCCCTCTAATTCA 60.819 55.000 0.00 0.00 36.11 2.57
2802 2903 1.233019 CATGCGGCCCTCTAATTCAG 58.767 55.000 0.00 0.00 0.00 3.02
2803 2904 0.109342 ATGCGGCCCTCTAATTCAGG 59.891 55.000 0.00 0.00 0.00 3.86
2804 2905 0.980754 TGCGGCCCTCTAATTCAGGA 60.981 55.000 0.00 0.00 31.91 3.86
2805 2906 0.533085 GCGGCCCTCTAATTCAGGAC 60.533 60.000 0.00 0.00 31.91 3.85
2806 2907 0.249489 CGGCCCTCTAATTCAGGACG 60.249 60.000 0.00 1.47 31.91 4.79
2807 2908 0.533085 GGCCCTCTAATTCAGGACGC 60.533 60.000 5.12 1.72 31.91 5.19
2808 2909 0.533085 GCCCTCTAATTCAGGACGCC 60.533 60.000 5.12 0.00 31.91 5.68
2809 2910 1.123928 CCCTCTAATTCAGGACGCCT 58.876 55.000 5.12 0.00 31.91 5.52
2817 2918 4.598257 CAGGACGCCTGTAACCTG 57.402 61.111 15.27 0.00 45.82 4.00
2818 2919 1.741770 CAGGACGCCTGTAACCTGC 60.742 63.158 15.27 0.00 45.82 4.85
2819 2920 1.913762 AGGACGCCTGTAACCTGCT 60.914 57.895 0.00 0.00 29.57 4.24
2820 2921 1.448013 GGACGCCTGTAACCTGCTC 60.448 63.158 0.00 0.00 0.00 4.26
2821 2922 1.292223 GACGCCTGTAACCTGCTCA 59.708 57.895 0.00 0.00 0.00 4.26
2822 2923 1.004918 ACGCCTGTAACCTGCTCAC 60.005 57.895 0.00 0.00 0.00 3.51
2823 2924 2.094659 CGCCTGTAACCTGCTCACG 61.095 63.158 0.00 0.00 0.00 4.35
2824 2925 1.741770 GCCTGTAACCTGCTCACGG 60.742 63.158 0.00 0.00 0.00 4.94
2826 2927 1.541310 CCTGTAACCTGCTCACGGGA 61.541 60.000 0.00 0.00 46.41 5.14
2827 2928 0.389948 CTGTAACCTGCTCACGGGAC 60.390 60.000 0.00 0.00 46.41 4.46
2828 2929 0.830444 TGTAACCTGCTCACGGGACT 60.830 55.000 0.00 0.00 46.41 3.85
2829 2930 0.320697 GTAACCTGCTCACGGGACTT 59.679 55.000 0.00 0.00 46.41 3.01
2830 2931 1.547372 GTAACCTGCTCACGGGACTTA 59.453 52.381 0.00 0.00 46.41 2.24
2831 2932 1.053424 AACCTGCTCACGGGACTTAA 58.947 50.000 0.00 0.00 46.41 1.85
2832 2933 1.053424 ACCTGCTCACGGGACTTAAA 58.947 50.000 0.00 0.00 46.41 1.52
2833 2934 1.418637 ACCTGCTCACGGGACTTAAAA 59.581 47.619 0.00 0.00 46.41 1.52
2834 2935 2.039879 ACCTGCTCACGGGACTTAAAAT 59.960 45.455 0.00 0.00 46.41 1.82
2835 2936 2.678336 CCTGCTCACGGGACTTAAAATC 59.322 50.000 0.00 0.00 46.41 2.17
2836 2937 2.678336 CTGCTCACGGGACTTAAAATCC 59.322 50.000 0.00 0.00 35.28 3.01
2842 2943 1.660167 GGGACTTAAAATCCCGGACG 58.340 55.000 0.73 0.00 46.51 4.79
2843 2944 1.660167 GGACTTAAAATCCCGGACGG 58.340 55.000 0.73 3.25 0.00 4.79
2844 2945 4.062704 GGGACTTAAAATCCCGGACGGA 62.063 54.545 13.13 0.00 46.51 4.69
2845 2946 2.547826 GACTTAAAATCCCGGACGGAG 58.452 52.381 13.13 2.05 46.60 4.63
2886 2987 8.958175 TTTGTACTGAAAATGGTTAAATAGCG 57.042 30.769 0.00 0.00 0.00 4.26
2891 2992 6.861055 ACTGAAAATGGTTAAATAGCGTTGTG 59.139 34.615 0.00 0.00 33.89 3.33
2960 3061 0.527817 GGTACGGCGGATGACTCAAG 60.528 60.000 13.24 0.00 0.00 3.02
3019 3121 2.107378 TGGGCTTCATTGTGTTCACCTA 59.893 45.455 0.37 0.00 0.00 3.08
3022 3124 3.146066 GCTTCATTGTGTTCACCTACCA 58.854 45.455 0.37 0.00 0.00 3.25
3097 3199 0.611200 TAATGGTGGGACGGTCTGTG 59.389 55.000 8.23 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 7.659290 AGTTTGACAAACGAAATTTTAGTCG 57.341 32.000 22.06 0.00 45.88 4.18
84 85 5.845103 TGTGTGTCTCGGTAATTAGTTTGA 58.155 37.500 0.00 0.00 0.00 2.69
94 95 8.959548 TCTAGTTTATAATTGTGTGTCTCGGTA 58.040 33.333 0.00 0.00 0.00 4.02
98 99 9.099454 CCCTTCTAGTTTATAATTGTGTGTCTC 57.901 37.037 0.00 0.00 0.00 3.36
124 125 1.133407 CTGAGGGACAGCGACTAACTC 59.867 57.143 0.00 0.00 39.86 3.01
133 134 2.509549 TGGCTCTAACTGAGGGACAGC 61.510 57.143 0.00 0.00 39.58 4.40
134 135 1.561643 TGGCTCTAACTGAGGGACAG 58.438 55.000 0.00 0.00 39.58 3.51
141 142 2.310779 ACTGGACTGGCTCTAACTGA 57.689 50.000 0.00 0.00 0.00 3.41
142 143 3.677424 GCTTACTGGACTGGCTCTAACTG 60.677 52.174 0.00 0.00 0.00 3.16
180 181 8.246180 TCAGAACTCAATTAATTGATTGAAGCC 58.754 33.333 26.83 14.57 44.92 4.35
196 197 5.297547 ACGTAGCTTTCATTCAGAACTCAA 58.702 37.500 0.00 0.00 35.56 3.02
212 213 1.134560 GTTGGAGGATCGAACGTAGCT 59.865 52.381 0.00 0.00 43.65 3.32
255 256 4.751098 TGGCAAAGAAGAAAAATGATGCAC 59.249 37.500 0.00 0.00 34.37 4.57
256 257 4.958509 TGGCAAAGAAGAAAAATGATGCA 58.041 34.783 0.00 0.00 34.37 3.96
440 444 0.612732 TTCTTCCTCTACCCGGCGAA 60.613 55.000 9.30 0.00 0.00 4.70
469 473 0.958876 TGGATGTTGCTGCTGCTCAG 60.959 55.000 17.00 2.74 45.62 3.35
470 474 0.323087 ATGGATGTTGCTGCTGCTCA 60.323 50.000 17.00 15.08 40.48 4.26
487 491 1.602851 GTGCTGCAGCTTCCTATGATG 59.397 52.381 36.61 0.00 42.66 3.07
540 544 2.507102 CACCGCTACTGCTCGTGG 60.507 66.667 0.00 0.00 35.11 4.94
608 639 5.539048 TGGGAGAGCTATATTAAGAAACGC 58.461 41.667 0.00 0.00 0.00 4.84
623 654 0.104671 GTGAGAGAGCATGGGAGAGC 59.895 60.000 0.00 0.00 0.00 4.09
694 745 8.704849 TGAAATGATTTCTTCCAAACTAGGAA 57.295 30.769 17.76 0.00 44.72 3.36
702 753 5.279607 CCAGGCTTGAAATGATTTCTTCCAA 60.280 40.000 17.76 4.83 40.32 3.53
782 833 6.093495 CGTAGGCAATGAGGACAAATTAGAAA 59.907 38.462 0.00 0.00 0.00 2.52
783 834 5.584649 CGTAGGCAATGAGGACAAATTAGAA 59.415 40.000 0.00 0.00 0.00 2.10
798 849 0.249489 GATGACGGAGCGTAGGCAAT 60.249 55.000 10.48 0.00 41.37 3.56
816 867 4.737578 ACACACAGTCTACCTCCTTAAGA 58.262 43.478 3.36 0.00 0.00 2.10
821 872 3.577919 AGAAACACACAGTCTACCTCCT 58.422 45.455 0.00 0.00 0.00 3.69
828 879 8.958119 TGATTAGTAAAAGAAACACACAGTCT 57.042 30.769 0.00 0.00 0.00 3.24
846 897 5.133221 ACTCTGGTTGCAGTTTTGATTAGT 58.867 37.500 0.00 0.00 0.00 2.24
868 919 7.723324 TGTCAAATCATAGGCCTACTACTAAC 58.277 38.462 16.61 9.06 33.70 2.34
869 920 7.907841 TGTCAAATCATAGGCCTACTACTAA 57.092 36.000 16.61 0.00 33.70 2.24
932 983 3.004315 TGTTTGTCGCCCTTCTTCATTTC 59.996 43.478 0.00 0.00 0.00 2.17
953 1004 1.717645 GAAACAAGAGCAAGCGCATTG 59.282 47.619 11.47 12.57 42.27 2.82
1069 1125 4.994471 TGACAGTGGCAGCGGCTG 62.994 66.667 25.21 25.21 40.87 4.85
1110 1166 5.299148 CCAATATTCAGCTCAGGAGAGAAG 58.701 45.833 0.00 0.00 44.98 2.85
1124 1180 1.208706 TCCACCGGAGCCAATATTCA 58.791 50.000 9.46 0.00 0.00 2.57
1128 1184 1.003118 GCATATCCACCGGAGCCAATA 59.997 52.381 9.46 0.00 34.05 1.90
1145 1201 4.407945 ACTGTACCTTATAAACCTCCGCAT 59.592 41.667 0.00 0.00 0.00 4.73
1205 1267 7.713073 AGTTTGATTAAATCCTTTCCGCAAAAA 59.287 29.630 0.00 0.00 0.00 1.94
1206 1268 7.213678 AGTTTGATTAAATCCTTTCCGCAAAA 58.786 30.769 0.00 0.00 0.00 2.44
1207 1269 6.754193 AGTTTGATTAAATCCTTTCCGCAAA 58.246 32.000 0.00 0.00 0.00 3.68
1208 1270 6.339587 AGTTTGATTAAATCCTTTCCGCAA 57.660 33.333 0.00 0.00 0.00 4.85
1209 1271 5.975693 AGTTTGATTAAATCCTTTCCGCA 57.024 34.783 0.00 0.00 0.00 5.69
1210 1272 8.926715 ATAAAGTTTGATTAAATCCTTTCCGC 57.073 30.769 0.00 0.00 29.91 5.54
1270 1337 6.485830 TTCTCAAGAATTCCCTACATCGAT 57.514 37.500 0.65 0.00 0.00 3.59
1354 1421 5.413523 CACCATCATGAGACATTCAACTTCA 59.586 40.000 0.09 0.00 39.77 3.02
1420 1487 4.571919 ACTTTAACATACTGCCTTGCGTA 58.428 39.130 0.00 0.00 0.00 4.42
1521 1588 6.015350 CCATATGATCCTACCCGTGATATACC 60.015 46.154 3.65 0.00 0.00 2.73
1589 1664 5.702670 GTGATATGTGGGATACTGAACCATG 59.297 44.000 0.00 0.00 36.54 3.66
1999 2096 0.464373 CCCCTGCACAATAGATGCGT 60.464 55.000 0.00 0.00 46.49 5.24
2003 2100 4.796110 ACATAACCCCTGCACAATAGAT 57.204 40.909 0.00 0.00 0.00 1.98
2010 2107 2.652313 TGCAACATAACCCCTGCAC 58.348 52.632 0.00 0.00 39.77 4.57
2040 2137 2.399396 GGTGTGTGATTTCACCGTTG 57.601 50.000 8.16 0.00 45.88 4.10
2073 2170 5.466819 TCCGCGATTATTATACCAAGACTG 58.533 41.667 8.23 0.00 0.00 3.51
2092 2189 0.680280 TCTCCTGTCAGTACCTCCGC 60.680 60.000 0.00 0.00 0.00 5.54
2137 2234 4.648651 ACCTAAATCGTGCTTACCTTGTT 58.351 39.130 0.00 0.00 0.00 2.83
2216 2315 6.236409 AGGGAGTGATATTATGTTGCATCTG 58.764 40.000 0.00 0.00 0.00 2.90
2333 2433 6.322712 AGGTGACTTCCATCTACTAGATGTTC 59.677 42.308 20.21 12.93 44.26 3.18
2376 2476 0.975135 TTCGGTGACCATTTCGGGTA 59.025 50.000 1.11 0.00 42.53 3.69
2490 2591 2.303022 CCCGGACCGAGGTAGTACTATA 59.697 54.545 17.49 0.00 0.00 1.31
2492 2593 0.469917 CCCGGACCGAGGTAGTACTA 59.530 60.000 17.49 0.00 0.00 1.82
2493 2594 1.225704 CCCGGACCGAGGTAGTACT 59.774 63.158 17.49 0.00 0.00 2.73
2494 2595 0.681243 AACCCGGACCGAGGTAGTAC 60.681 60.000 22.40 0.00 34.45 2.73
2495 2596 0.039618 AAACCCGGACCGAGGTAGTA 59.960 55.000 22.40 0.00 34.45 1.82
2496 2597 0.039618 TAAACCCGGACCGAGGTAGT 59.960 55.000 22.40 16.82 34.45 2.73
2497 2598 1.185315 TTAAACCCGGACCGAGGTAG 58.815 55.000 22.40 4.05 34.45 3.18
2498 2599 1.550072 CTTTAAACCCGGACCGAGGTA 59.450 52.381 22.40 9.41 34.45 3.08
2499 2600 0.322648 CTTTAAACCCGGACCGAGGT 59.677 55.000 17.49 17.88 38.27 3.85
2500 2601 0.392060 CCTTTAAACCCGGACCGAGG 60.392 60.000 17.49 17.18 0.00 4.63
2501 2602 1.022982 GCCTTTAAACCCGGACCGAG 61.023 60.000 17.49 4.05 0.00 4.63
2502 2603 1.003476 GCCTTTAAACCCGGACCGA 60.003 57.895 17.49 0.00 0.00 4.69
2503 2604 2.042259 GGCCTTTAAACCCGGACCG 61.042 63.158 6.99 6.99 0.00 4.79
2504 2605 1.679977 GGGCCTTTAAACCCGGACC 60.680 63.158 0.73 1.24 39.20 4.46
2505 2606 4.007457 GGGCCTTTAAACCCGGAC 57.993 61.111 0.73 0.00 36.07 4.79
2521 2622 3.361977 CGCGTTTTGGTCTGGGGG 61.362 66.667 0.00 0.00 0.00 5.40
2522 2623 2.593436 ACGCGTTTTGGTCTGGGG 60.593 61.111 5.58 0.00 0.00 4.96
2523 2624 0.881159 TACACGCGTTTTGGTCTGGG 60.881 55.000 10.22 0.00 0.00 4.45
2524 2625 0.233848 GTACACGCGTTTTGGTCTGG 59.766 55.000 10.22 0.00 0.00 3.86
2525 2626 0.233848 GGTACACGCGTTTTGGTCTG 59.766 55.000 10.22 0.00 0.00 3.51
2526 2627 0.179078 TGGTACACGCGTTTTGGTCT 60.179 50.000 10.22 0.00 0.00 3.85
2527 2628 0.656785 TTGGTACACGCGTTTTGGTC 59.343 50.000 10.22 0.00 39.29 4.02
2528 2629 0.658897 CTTGGTACACGCGTTTTGGT 59.341 50.000 10.22 7.18 39.29 3.67
2529 2630 0.938713 TCTTGGTACACGCGTTTTGG 59.061 50.000 10.22 0.00 39.29 3.28
2530 2631 1.655325 CGTCTTGGTACACGCGTTTTG 60.655 52.381 10.22 0.00 39.29 2.44
2531 2632 0.578211 CGTCTTGGTACACGCGTTTT 59.422 50.000 10.22 1.15 39.29 2.43
2532 2633 2.218934 CGTCTTGGTACACGCGTTT 58.781 52.632 10.22 5.90 39.29 3.60
2533 2634 3.926497 CGTCTTGGTACACGCGTT 58.074 55.556 10.22 3.81 39.29 4.84
2537 2638 0.732880 CTGAGGCGTCTTGGTACACG 60.733 60.000 8.06 0.00 39.29 4.49
2538 2639 0.317479 ACTGAGGCGTCTTGGTACAC 59.683 55.000 8.06 0.00 39.29 2.90
2539 2640 0.317160 CACTGAGGCGTCTTGGTACA 59.683 55.000 8.06 0.00 0.00 2.90
2540 2641 1.014564 GCACTGAGGCGTCTTGGTAC 61.015 60.000 8.06 0.00 0.00 3.34
2541 2642 1.292223 GCACTGAGGCGTCTTGGTA 59.708 57.895 8.06 0.00 0.00 3.25
2542 2643 2.031163 GCACTGAGGCGTCTTGGT 59.969 61.111 8.06 1.66 0.00 3.67
2543 2644 0.108186 TATGCACTGAGGCGTCTTGG 60.108 55.000 8.06 1.06 36.28 3.61
2544 2645 1.284657 CTATGCACTGAGGCGTCTTG 58.715 55.000 8.06 6.14 36.28 3.02
2545 2646 0.898320 ACTATGCACTGAGGCGTCTT 59.102 50.000 8.06 0.00 36.28 3.01
2546 2647 1.763968 TACTATGCACTGAGGCGTCT 58.236 50.000 8.06 0.00 36.28 4.18
2547 2648 2.579207 TTACTATGCACTGAGGCGTC 57.421 50.000 0.00 0.00 36.28 5.19
2548 2649 2.695666 AGATTACTATGCACTGAGGCGT 59.304 45.455 0.00 0.00 36.28 5.68
2549 2650 3.055591 CAGATTACTATGCACTGAGGCG 58.944 50.000 0.00 0.00 36.28 5.52
2550 2651 2.805099 GCAGATTACTATGCACTGAGGC 59.195 50.000 2.66 0.00 42.11 4.70
2551 2652 4.063998 TGCAGATTACTATGCACTGAGG 57.936 45.455 0.00 0.00 46.97 3.86
2558 2659 5.461737 GTCAGACTCTTGCAGATTACTATGC 59.538 44.000 0.00 0.00 42.86 3.14
2559 2660 5.982516 GGTCAGACTCTTGCAGATTACTATG 59.017 44.000 0.00 0.00 0.00 2.23
2560 2661 5.658634 TGGTCAGACTCTTGCAGATTACTAT 59.341 40.000 0.00 0.00 0.00 2.12
2561 2662 5.016831 TGGTCAGACTCTTGCAGATTACTA 58.983 41.667 0.00 0.00 0.00 1.82
2562 2663 3.834813 TGGTCAGACTCTTGCAGATTACT 59.165 43.478 0.00 0.00 0.00 2.24
2563 2664 4.193826 TGGTCAGACTCTTGCAGATTAC 57.806 45.455 0.00 0.00 0.00 1.89
2564 2665 4.563580 GGTTGGTCAGACTCTTGCAGATTA 60.564 45.833 0.00 0.00 0.00 1.75
2565 2666 3.406764 GTTGGTCAGACTCTTGCAGATT 58.593 45.455 0.00 0.00 0.00 2.40
2566 2667 2.289945 GGTTGGTCAGACTCTTGCAGAT 60.290 50.000 0.00 0.00 0.00 2.90
2567 2668 1.070758 GGTTGGTCAGACTCTTGCAGA 59.929 52.381 0.00 0.00 0.00 4.26
2568 2669 1.202687 TGGTTGGTCAGACTCTTGCAG 60.203 52.381 0.00 0.00 0.00 4.41
2569 2670 0.836606 TGGTTGGTCAGACTCTTGCA 59.163 50.000 0.00 0.00 0.00 4.08
2570 2671 2.191128 ATGGTTGGTCAGACTCTTGC 57.809 50.000 0.00 0.00 0.00 4.01
2571 2672 4.248859 CACTATGGTTGGTCAGACTCTTG 58.751 47.826 0.00 0.00 0.00 3.02
2572 2673 3.904339 ACACTATGGTTGGTCAGACTCTT 59.096 43.478 0.00 0.00 0.00 2.85
2573 2674 3.259374 CACACTATGGTTGGTCAGACTCT 59.741 47.826 0.00 0.00 0.00 3.24
2574 2675 3.006967 ACACACTATGGTTGGTCAGACTC 59.993 47.826 0.00 0.00 0.00 3.36
2575 2676 2.972713 ACACACTATGGTTGGTCAGACT 59.027 45.455 0.00 0.00 0.00 3.24
2576 2677 3.402628 ACACACTATGGTTGGTCAGAC 57.597 47.619 0.00 0.00 0.00 3.51
2577 2678 5.554437 TTTACACACTATGGTTGGTCAGA 57.446 39.130 0.00 0.00 0.00 3.27
2578 2679 6.128007 GGATTTTACACACTATGGTTGGTCAG 60.128 42.308 0.00 0.00 0.00 3.51
2579 2680 5.708230 GGATTTTACACACTATGGTTGGTCA 59.292 40.000 0.00 0.00 0.00 4.02
2580 2681 5.124936 GGGATTTTACACACTATGGTTGGTC 59.875 44.000 0.00 0.00 0.00 4.02
2581 2682 5.014202 GGGATTTTACACACTATGGTTGGT 58.986 41.667 0.00 0.00 0.00 3.67
2582 2683 5.261216 AGGGATTTTACACACTATGGTTGG 58.739 41.667 0.00 0.00 0.00 3.77
2583 2684 6.094048 CAGAGGGATTTTACACACTATGGTTG 59.906 42.308 0.00 0.00 0.00 3.77
2584 2685 6.180472 CAGAGGGATTTTACACACTATGGTT 58.820 40.000 0.00 0.00 0.00 3.67
2585 2686 5.250774 ACAGAGGGATTTTACACACTATGGT 59.749 40.000 0.00 0.00 0.00 3.55
2586 2687 5.745227 ACAGAGGGATTTTACACACTATGG 58.255 41.667 0.00 0.00 0.00 2.74
2587 2688 6.644347 AGACAGAGGGATTTTACACACTATG 58.356 40.000 0.00 0.00 0.00 2.23
2588 2689 6.127026 GGAGACAGAGGGATTTTACACACTAT 60.127 42.308 0.00 0.00 0.00 2.12
2589 2690 5.187186 GGAGACAGAGGGATTTTACACACTA 59.813 44.000 0.00 0.00 0.00 2.74
2590 2691 4.020128 GGAGACAGAGGGATTTTACACACT 60.020 45.833 0.00 0.00 0.00 3.55
2591 2692 4.020128 AGGAGACAGAGGGATTTTACACAC 60.020 45.833 0.00 0.00 0.00 3.82
2592 2693 4.168101 AGGAGACAGAGGGATTTTACACA 58.832 43.478 0.00 0.00 0.00 3.72
2593 2694 4.828072 AGGAGACAGAGGGATTTTACAC 57.172 45.455 0.00 0.00 0.00 2.90
2594 2695 4.597507 ACAAGGAGACAGAGGGATTTTACA 59.402 41.667 0.00 0.00 0.00 2.41
2595 2696 5.167303 ACAAGGAGACAGAGGGATTTTAC 57.833 43.478 0.00 0.00 0.00 2.01
2596 2697 4.225267 GGACAAGGAGACAGAGGGATTTTA 59.775 45.833 0.00 0.00 0.00 1.52
2597 2698 3.009584 GGACAAGGAGACAGAGGGATTTT 59.990 47.826 0.00 0.00 0.00 1.82
2598 2699 2.573915 GGACAAGGAGACAGAGGGATTT 59.426 50.000 0.00 0.00 0.00 2.17
2599 2700 2.192263 GGACAAGGAGACAGAGGGATT 58.808 52.381 0.00 0.00 0.00 3.01
2600 2701 1.623834 GGGACAAGGAGACAGAGGGAT 60.624 57.143 0.00 0.00 0.00 3.85
2601 2702 0.252284 GGGACAAGGAGACAGAGGGA 60.252 60.000 0.00 0.00 0.00 4.20
2602 2703 0.545309 TGGGACAAGGAGACAGAGGG 60.545 60.000 0.00 0.00 31.92 4.30
2603 2704 3.073228 TGGGACAAGGAGACAGAGG 57.927 57.895 0.00 0.00 31.92 3.69
2616 2717 5.248870 AGCAAACGAATAATCAATGGGAC 57.751 39.130 0.00 0.00 0.00 4.46
2617 2718 4.338118 GGAGCAAACGAATAATCAATGGGA 59.662 41.667 0.00 0.00 0.00 4.37
2618 2719 4.339247 AGGAGCAAACGAATAATCAATGGG 59.661 41.667 0.00 0.00 0.00 4.00
2619 2720 5.505173 AGGAGCAAACGAATAATCAATGG 57.495 39.130 0.00 0.00 0.00 3.16
2620 2721 5.297776 AGGAGGAGCAAACGAATAATCAATG 59.702 40.000 0.00 0.00 0.00 2.82
2621 2722 5.297776 CAGGAGGAGCAAACGAATAATCAAT 59.702 40.000 0.00 0.00 0.00 2.57
2622 2723 4.635765 CAGGAGGAGCAAACGAATAATCAA 59.364 41.667 0.00 0.00 0.00 2.57
2623 2724 4.191544 CAGGAGGAGCAAACGAATAATCA 58.808 43.478 0.00 0.00 0.00 2.57
2624 2725 4.192317 ACAGGAGGAGCAAACGAATAATC 58.808 43.478 0.00 0.00 0.00 1.75
2625 2726 4.222124 ACAGGAGGAGCAAACGAATAAT 57.778 40.909 0.00 0.00 0.00 1.28
2626 2727 3.695830 ACAGGAGGAGCAAACGAATAA 57.304 42.857 0.00 0.00 0.00 1.40
2627 2728 3.695830 AACAGGAGGAGCAAACGAATA 57.304 42.857 0.00 0.00 0.00 1.75
2628 2729 2.568623 AACAGGAGGAGCAAACGAAT 57.431 45.000 0.00 0.00 0.00 3.34
2629 2730 3.478857 TTAACAGGAGGAGCAAACGAA 57.521 42.857 0.00 0.00 0.00 3.85
2630 2731 3.695830 ATTAACAGGAGGAGCAAACGA 57.304 42.857 0.00 0.00 0.00 3.85
2631 2732 4.379499 GGAAATTAACAGGAGGAGCAAACG 60.379 45.833 0.00 0.00 0.00 3.60
2632 2733 4.767409 AGGAAATTAACAGGAGGAGCAAAC 59.233 41.667 0.00 0.00 0.00 2.93
2633 2734 4.766891 CAGGAAATTAACAGGAGGAGCAAA 59.233 41.667 0.00 0.00 0.00 3.68
2634 2735 4.335416 CAGGAAATTAACAGGAGGAGCAA 58.665 43.478 0.00 0.00 0.00 3.91
2635 2736 3.873801 GCAGGAAATTAACAGGAGGAGCA 60.874 47.826 0.00 0.00 0.00 4.26
2636 2737 2.685388 GCAGGAAATTAACAGGAGGAGC 59.315 50.000 0.00 0.00 0.00 4.70
2637 2738 2.939103 CGCAGGAAATTAACAGGAGGAG 59.061 50.000 0.00 0.00 0.00 3.69
2638 2739 2.985896 CGCAGGAAATTAACAGGAGGA 58.014 47.619 0.00 0.00 0.00 3.71
2657 2758 1.079875 TTTAGTTTAGCGAGCGGCCG 61.080 55.000 24.05 24.05 45.17 6.13
2658 2759 1.062148 CTTTTAGTTTAGCGAGCGGCC 59.938 52.381 0.00 0.00 45.17 6.13
2659 2760 1.997606 TCTTTTAGTTTAGCGAGCGGC 59.002 47.619 0.00 0.00 44.05 6.53
2660 2761 4.578601 CATTCTTTTAGTTTAGCGAGCGG 58.421 43.478 0.00 0.00 0.00 5.52
2661 2762 4.022475 GCATTCTTTTAGTTTAGCGAGCG 58.978 43.478 0.00 0.00 0.00 5.03
2662 2763 4.969816 TGCATTCTTTTAGTTTAGCGAGC 58.030 39.130 0.00 0.00 0.00 5.03
2663 2764 6.470235 CCAATGCATTCTTTTAGTTTAGCGAG 59.530 38.462 9.53 0.00 0.00 5.03
2664 2765 6.321717 CCAATGCATTCTTTTAGTTTAGCGA 58.678 36.000 9.53 0.00 0.00 4.93
2665 2766 5.004726 GCCAATGCATTCTTTTAGTTTAGCG 59.995 40.000 9.53 0.00 37.47 4.26
2666 2767 6.035327 CAGCCAATGCATTCTTTTAGTTTAGC 59.965 38.462 9.53 0.00 41.13 3.09
2667 2768 7.515957 CAGCCAATGCATTCTTTTAGTTTAG 57.484 36.000 9.53 0.00 41.13 1.85
2683 2784 0.174617 TCATGTGCATGCAGCCAATG 59.825 50.000 23.41 20.73 44.83 2.82
2684 2785 0.459899 CTCATGTGCATGCAGCCAAT 59.540 50.000 23.41 9.89 44.83 3.16
2685 2786 0.896479 ACTCATGTGCATGCAGCCAA 60.896 50.000 23.41 7.74 44.83 4.52
2686 2787 0.035247 TACTCATGTGCATGCAGCCA 60.035 50.000 23.41 17.37 44.83 4.75
2687 2788 1.266175 GATACTCATGTGCATGCAGCC 59.734 52.381 23.41 11.34 44.83 4.85
2688 2789 2.031944 CAGATACTCATGTGCATGCAGC 60.032 50.000 23.41 16.34 45.96 5.25
2689 2790 3.879932 CAGATACTCATGTGCATGCAG 57.120 47.619 23.41 11.76 38.65 4.41
2700 2801 3.131223 GCAACTAGGTGAGCAGATACTCA 59.869 47.826 13.29 0.00 44.32 3.41
2701 2802 3.712187 GCAACTAGGTGAGCAGATACTC 58.288 50.000 13.29 0.00 37.19 2.59
2702 2803 2.099921 CGCAACTAGGTGAGCAGATACT 59.900 50.000 13.29 0.00 0.00 2.12
2703 2804 2.159226 ACGCAACTAGGTGAGCAGATAC 60.159 50.000 13.29 0.00 0.00 2.24
2704 2805 2.100197 ACGCAACTAGGTGAGCAGATA 58.900 47.619 13.29 0.00 0.00 1.98
2705 2806 0.898320 ACGCAACTAGGTGAGCAGAT 59.102 50.000 13.29 0.00 0.00 2.90
2706 2807 0.038251 CACGCAACTAGGTGAGCAGA 60.038 55.000 13.29 0.00 36.25 4.26
2707 2808 1.630244 GCACGCAACTAGGTGAGCAG 61.630 60.000 13.29 6.07 36.25 4.24
2708 2809 1.667830 GCACGCAACTAGGTGAGCA 60.668 57.895 13.29 0.00 36.25 4.26
2709 2810 2.391389 GGCACGCAACTAGGTGAGC 61.391 63.158 13.29 11.70 36.25 4.26
2710 2811 0.320771 AAGGCACGCAACTAGGTGAG 60.321 55.000 13.29 11.67 36.25 3.51
2711 2812 0.320421 GAAGGCACGCAACTAGGTGA 60.320 55.000 13.29 0.00 36.25 4.02
2712 2813 1.626654 CGAAGGCACGCAACTAGGTG 61.627 60.000 2.45 2.45 37.22 4.00
2713 2814 1.374252 CGAAGGCACGCAACTAGGT 60.374 57.895 0.00 0.00 0.00 3.08
2714 2815 0.108992 TACGAAGGCACGCAACTAGG 60.109 55.000 0.00 0.00 36.70 3.02
2715 2816 1.269166 CTACGAAGGCACGCAACTAG 58.731 55.000 0.00 0.00 36.70 2.57
2716 2817 0.108992 CCTACGAAGGCACGCAACTA 60.109 55.000 0.00 0.00 35.64 2.24
2717 2818 1.374252 CCTACGAAGGCACGCAACT 60.374 57.895 0.00 0.00 35.64 3.16
2718 2819 3.165498 CCTACGAAGGCACGCAAC 58.835 61.111 0.00 0.00 35.64 4.17
2726 2827 3.378339 CGGTAGTTATTGCCTACGAAGG 58.622 50.000 0.00 0.00 46.76 3.46
2727 2828 2.793232 GCGGTAGTTATTGCCTACGAAG 59.207 50.000 0.00 0.00 36.48 3.79
2728 2829 2.795681 CGCGGTAGTTATTGCCTACGAA 60.796 50.000 0.00 0.00 36.48 3.85
2729 2830 1.268692 CGCGGTAGTTATTGCCTACGA 60.269 52.381 0.00 0.00 36.48 3.43
2730 2831 1.126079 CGCGGTAGTTATTGCCTACG 58.874 55.000 0.00 0.00 36.48 3.51
2731 2832 2.033801 TCTCGCGGTAGTTATTGCCTAC 59.966 50.000 6.13 0.00 35.18 3.18
2732 2833 2.300433 TCTCGCGGTAGTTATTGCCTA 58.700 47.619 6.13 0.00 0.00 3.93
2733 2834 1.108776 TCTCGCGGTAGTTATTGCCT 58.891 50.000 6.13 0.00 0.00 4.75
2734 2835 1.591619 GTTCTCGCGGTAGTTATTGCC 59.408 52.381 6.13 0.00 0.00 4.52
2735 2836 1.591619 GGTTCTCGCGGTAGTTATTGC 59.408 52.381 6.13 0.00 0.00 3.56
2736 2837 2.858344 CTGGTTCTCGCGGTAGTTATTG 59.142 50.000 6.13 0.00 0.00 1.90
2737 2838 2.737679 GCTGGTTCTCGCGGTAGTTATT 60.738 50.000 6.13 0.00 0.00 1.40
2738 2839 1.202382 GCTGGTTCTCGCGGTAGTTAT 60.202 52.381 6.13 0.00 0.00 1.89
2739 2840 0.171903 GCTGGTTCTCGCGGTAGTTA 59.828 55.000 6.13 0.00 0.00 2.24
2740 2841 1.080025 GCTGGTTCTCGCGGTAGTT 60.080 57.895 6.13 0.00 0.00 2.24
2741 2842 2.572284 GCTGGTTCTCGCGGTAGT 59.428 61.111 6.13 0.00 0.00 2.73
2742 2843 2.202756 GGCTGGTTCTCGCGGTAG 60.203 66.667 6.13 0.00 0.00 3.18
2743 2844 1.895020 ATTGGCTGGTTCTCGCGGTA 61.895 55.000 6.13 0.00 0.00 4.02
2744 2845 1.895020 TATTGGCTGGTTCTCGCGGT 61.895 55.000 6.13 0.00 0.00 5.68
2745 2846 1.153449 TATTGGCTGGTTCTCGCGG 60.153 57.895 6.13 0.00 0.00 6.46
2746 2847 0.179111 TCTATTGGCTGGTTCTCGCG 60.179 55.000 0.00 0.00 0.00 5.87
2747 2848 2.024176 TTCTATTGGCTGGTTCTCGC 57.976 50.000 0.00 0.00 0.00 5.03
2748 2849 3.375299 CCTTTTCTATTGGCTGGTTCTCG 59.625 47.826 0.00 0.00 0.00 4.04
2749 2850 4.336280 ACCTTTTCTATTGGCTGGTTCTC 58.664 43.478 0.00 0.00 0.00 2.87
2750 2851 4.336280 GACCTTTTCTATTGGCTGGTTCT 58.664 43.478 0.00 0.00 0.00 3.01
2751 2852 3.127030 CGACCTTTTCTATTGGCTGGTTC 59.873 47.826 0.00 0.00 0.00 3.62
2752 2853 3.081804 CGACCTTTTCTATTGGCTGGTT 58.918 45.455 0.00 0.00 0.00 3.67
2753 2854 2.304761 TCGACCTTTTCTATTGGCTGGT 59.695 45.455 0.00 0.00 0.00 4.00
2754 2855 2.939103 CTCGACCTTTTCTATTGGCTGG 59.061 50.000 0.00 0.00 0.00 4.85
2755 2856 2.352960 GCTCGACCTTTTCTATTGGCTG 59.647 50.000 0.00 0.00 0.00 4.85
2756 2857 2.633488 GCTCGACCTTTTCTATTGGCT 58.367 47.619 0.00 0.00 0.00 4.75
2757 2858 1.327764 CGCTCGACCTTTTCTATTGGC 59.672 52.381 0.00 0.00 0.00 4.52
2758 2859 2.618053 ACGCTCGACCTTTTCTATTGG 58.382 47.619 0.00 0.00 0.00 3.16
2759 2860 4.663636 AAACGCTCGACCTTTTCTATTG 57.336 40.909 0.00 0.00 0.00 1.90
2760 2861 4.612939 GCAAAACGCTCGACCTTTTCTATT 60.613 41.667 0.00 0.00 37.77 1.73
2761 2862 3.120304 GCAAAACGCTCGACCTTTTCTAT 60.120 43.478 0.00 0.00 37.77 1.98
2762 2863 2.222445 GCAAAACGCTCGACCTTTTCTA 59.778 45.455 0.00 0.00 37.77 2.10
2763 2864 1.002792 GCAAAACGCTCGACCTTTTCT 60.003 47.619 0.00 0.00 37.77 2.52
2764 2865 1.268335 TGCAAAACGCTCGACCTTTTC 60.268 47.619 0.00 0.00 43.06 2.29
2765 2866 0.736053 TGCAAAACGCTCGACCTTTT 59.264 45.000 0.00 0.00 43.06 2.27
2766 2867 0.951558 ATGCAAAACGCTCGACCTTT 59.048 45.000 0.00 0.00 43.06 3.11
2767 2868 0.238289 CATGCAAAACGCTCGACCTT 59.762 50.000 0.00 0.00 43.06 3.50
2768 2869 1.868997 CATGCAAAACGCTCGACCT 59.131 52.632 0.00 0.00 43.06 3.85
2769 2870 1.797537 GCATGCAAAACGCTCGACC 60.798 57.895 14.21 0.00 43.06 4.79
2770 2871 2.139811 CGCATGCAAAACGCTCGAC 61.140 57.895 19.57 0.00 43.06 4.20
2771 2872 2.173141 CGCATGCAAAACGCTCGA 59.827 55.556 19.57 0.00 43.06 4.04
2772 2873 2.871080 CCGCATGCAAAACGCTCG 60.871 61.111 19.57 0.00 43.06 5.03
2773 2874 3.174573 GCCGCATGCAAAACGCTC 61.175 61.111 19.57 0.00 43.06 5.03
2774 2875 4.722855 GGCCGCATGCAAAACGCT 62.723 61.111 19.57 0.00 43.89 5.07
2776 2877 3.969642 GAGGGCCGCATGCAAAACG 62.970 63.158 19.57 0.00 43.89 3.60
2777 2878 1.312371 TAGAGGGCCGCATGCAAAAC 61.312 55.000 19.57 4.88 43.89 2.43
2778 2879 0.610509 TTAGAGGGCCGCATGCAAAA 60.611 50.000 19.57 0.00 43.89 2.44
2779 2880 0.395586 ATTAGAGGGCCGCATGCAAA 60.396 50.000 19.57 0.00 43.89 3.68
2780 2881 0.395586 AATTAGAGGGCCGCATGCAA 60.396 50.000 19.57 1.51 43.89 4.08
2781 2882 0.819259 GAATTAGAGGGCCGCATGCA 60.819 55.000 19.57 0.00 43.89 3.96
2782 2883 0.819259 TGAATTAGAGGGCCGCATGC 60.819 55.000 10.70 7.91 40.16 4.06
2783 2884 1.233019 CTGAATTAGAGGGCCGCATG 58.767 55.000 10.70 0.00 0.00 4.06
2784 2885 0.109342 CCTGAATTAGAGGGCCGCAT 59.891 55.000 10.70 0.00 0.00 4.73
2785 2886 0.980754 TCCTGAATTAGAGGGCCGCA 60.981 55.000 10.70 0.00 0.00 5.69
2786 2887 0.533085 GTCCTGAATTAGAGGGCCGC 60.533 60.000 0.00 0.00 0.00 6.53
2787 2888 0.249489 CGTCCTGAATTAGAGGGCCG 60.249 60.000 0.00 3.03 30.76 6.13
2788 2889 0.533085 GCGTCCTGAATTAGAGGGCC 60.533 60.000 0.00 0.00 30.76 5.80
2789 2890 0.533085 GGCGTCCTGAATTAGAGGGC 60.533 60.000 3.65 1.09 36.50 5.19
2790 2891 1.123928 AGGCGTCCTGAATTAGAGGG 58.876 55.000 3.65 0.00 29.57 4.30
2801 2902 1.889530 GAGCAGGTTACAGGCGTCCT 61.890 60.000 0.00 0.00 0.00 3.85
2802 2903 1.448013 GAGCAGGTTACAGGCGTCC 60.448 63.158 0.00 0.00 0.00 4.79
2803 2904 1.014564 GTGAGCAGGTTACAGGCGTC 61.015 60.000 0.00 0.00 0.00 5.19
2804 2905 1.004918 GTGAGCAGGTTACAGGCGT 60.005 57.895 0.00 0.00 0.00 5.68
2805 2906 2.094659 CGTGAGCAGGTTACAGGCG 61.095 63.158 0.00 0.00 0.00 5.52
2806 2907 1.741770 CCGTGAGCAGGTTACAGGC 60.742 63.158 0.00 0.00 0.00 4.85
2807 2908 1.079127 CCCGTGAGCAGGTTACAGG 60.079 63.158 0.00 0.00 0.00 4.00
2808 2909 0.389948 GTCCCGTGAGCAGGTTACAG 60.390 60.000 0.00 0.00 0.00 2.74
2809 2910 0.830444 AGTCCCGTGAGCAGGTTACA 60.830 55.000 0.00 0.00 0.00 2.41
2810 2911 0.320697 AAGTCCCGTGAGCAGGTTAC 59.679 55.000 0.00 0.00 0.00 2.50
2811 2912 1.927487 TAAGTCCCGTGAGCAGGTTA 58.073 50.000 0.00 0.00 0.00 2.85
2812 2913 1.053424 TTAAGTCCCGTGAGCAGGTT 58.947 50.000 0.00 0.00 0.00 3.50
2813 2914 1.053424 TTTAAGTCCCGTGAGCAGGT 58.947 50.000 0.00 0.00 0.00 4.00
2814 2915 2.178912 TTTTAAGTCCCGTGAGCAGG 57.821 50.000 0.00 0.00 0.00 4.85
2815 2916 2.678336 GGATTTTAAGTCCCGTGAGCAG 59.322 50.000 0.00 0.00 0.00 4.24
2816 2917 2.617021 GGGATTTTAAGTCCCGTGAGCA 60.617 50.000 9.79 0.00 45.47 4.26
2817 2918 2.014857 GGGATTTTAAGTCCCGTGAGC 58.985 52.381 9.79 0.00 45.47 4.26
2824 2925 1.207811 TCCGTCCGGGATTTTAAGTCC 59.792 52.381 0.00 0.00 40.94 3.85
2825 2926 2.547826 CTCCGTCCGGGATTTTAAGTC 58.452 52.381 0.00 0.00 46.04 3.01
2826 2927 1.208776 CCTCCGTCCGGGATTTTAAGT 59.791 52.381 0.00 0.00 46.04 2.24
2827 2928 1.208776 ACCTCCGTCCGGGATTTTAAG 59.791 52.381 0.00 0.00 46.04 1.85
2828 2929 1.278537 ACCTCCGTCCGGGATTTTAA 58.721 50.000 0.00 0.00 46.04 1.52
2829 2930 2.034124 CTACCTCCGTCCGGGATTTTA 58.966 52.381 0.00 0.00 46.04 1.52
2830 2931 0.828677 CTACCTCCGTCCGGGATTTT 59.171 55.000 0.00 0.00 46.04 1.82
2831 2932 0.325016 ACTACCTCCGTCCGGGATTT 60.325 55.000 0.00 0.00 46.04 2.17
2832 2933 0.552848 TACTACCTCCGTCCGGGATT 59.447 55.000 0.00 0.00 46.04 3.01
2833 2934 0.776176 ATACTACCTCCGTCCGGGAT 59.224 55.000 0.00 0.00 46.04 3.85
2834 2935 1.434188 TATACTACCTCCGTCCGGGA 58.566 55.000 0.00 0.00 44.68 5.14
2835 2936 2.089980 CATATACTACCTCCGTCCGGG 58.910 57.143 0.00 0.00 35.59 5.73
2836 2937 1.471684 GCATATACTACCTCCGTCCGG 59.528 57.143 0.00 0.00 0.00 5.14
2837 2938 2.434428 AGCATATACTACCTCCGTCCG 58.566 52.381 0.00 0.00 0.00 4.79
2838 2939 6.527057 AATTAGCATATACTACCTCCGTCC 57.473 41.667 0.00 0.00 0.00 4.79
2839 2940 7.871463 ACAAAATTAGCATATACTACCTCCGTC 59.129 37.037 0.00 0.00 0.00 4.79
2840 2941 7.732996 ACAAAATTAGCATATACTACCTCCGT 58.267 34.615 0.00 0.00 0.00 4.69
2841 2942 9.136952 GTACAAAATTAGCATATACTACCTCCG 57.863 37.037 0.00 0.00 0.00 4.63
2886 2987 8.492673 TTTGATGTCTATTATGAGGACACAAC 57.507 34.615 0.00 0.00 41.75 3.32
2891 2992 8.778358 GGTCATTTTGATGTCTATTATGAGGAC 58.222 37.037 0.00 0.00 0.00 3.85
2998 3099 1.133513 AGGTGAACACAATGAAGCCCA 60.134 47.619 7.25 0.00 0.00 5.36
3019 3121 6.825721 TGCAAAATTGGTCAATAAACTTTGGT 59.174 30.769 14.85 0.00 30.97 3.67
3022 3124 8.729805 TTCTGCAAAATTGGTCAATAAACTTT 57.270 26.923 0.00 0.00 0.00 2.66
3053 3155 1.239347 GTGAAACCAGCTGAACCTCC 58.761 55.000 17.39 0.00 0.00 4.30
3097 3199 3.181500 GGCCCGTCTGTTCATTATGTTTC 60.181 47.826 0.00 0.00 0.00 2.78
3123 3227 6.141685 CGTTTGAATGGAAAAGACTAAAACCG 59.858 38.462 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.