Multiple sequence alignment - TraesCS1B01G003000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G003000 chr1B 100.000 5795 0 0 1 5795 1968181 1973975 0.000000e+00 10702.0
1 TraesCS1B01G003000 chr1B 90.424 1911 134 27 3107 4996 2303541 2301659 0.000000e+00 2470.0
2 TraesCS1B01G003000 chr1B 91.926 1511 108 10 1456 2961 2305040 2303539 0.000000e+00 2102.0
3 TraesCS1B01G003000 chr1B 98.148 972 18 0 1 972 217715328 217716299 0.000000e+00 1696.0
4 TraesCS1B01G003000 chr1B 79.468 1505 288 11 3120 4613 2054887 2053393 0.000000e+00 1048.0
5 TraesCS1B01G003000 chr1B 78.340 1482 269 31 3162 4629 1781945 1783388 0.000000e+00 911.0
6 TraesCS1B01G003000 chr1B 78.469 1398 274 14 3227 4613 2077491 2076110 0.000000e+00 889.0
7 TraesCS1B01G003000 chr1B 77.695 1484 290 28 3162 4629 723361 721903 0.000000e+00 869.0
8 TraesCS1B01G003000 chr1B 77.665 1482 285 27 3162 4629 1845884 1844435 0.000000e+00 861.0
9 TraesCS1B01G003000 chr1B 94.061 522 29 2 976 1496 2305595 2305075 0.000000e+00 791.0
10 TraesCS1B01G003000 chr1B 76.361 1506 271 49 3162 4629 2754334 2752876 0.000000e+00 730.0
11 TraesCS1B01G003000 chr1B 86.901 313 15 10 5140 5452 2301623 2301337 1.560000e-85 327.0
12 TraesCS1B01G003000 chr1B 77.465 426 69 17 973 1383 2056569 2056156 4.520000e-56 230.0
13 TraesCS1B01G003000 chr1B 77.412 425 71 12 973 1383 2103809 2103396 4.520000e-56 230.0
14 TraesCS1B01G003000 chr1B 88.991 109 10 2 4375 4482 861554 861447 3.640000e-27 134.0
15 TraesCS1B01G003000 chrUn 90.752 2541 172 27 3264 5772 21792 24301 0.000000e+00 3332.0
16 TraesCS1B01G003000 chr6B 98.161 979 18 0 1 979 426459381 426458403 0.000000e+00 1709.0
17 TraesCS1B01G003000 chr6B 98.356 973 16 0 1 973 709203302 709202330 0.000000e+00 1709.0
18 TraesCS1B01G003000 chr6B 100.000 37 0 0 5442 5478 716890063 716890027 1.040000e-07 69.4
19 TraesCS1B01G003000 chr5B 98.253 973 15 2 1 972 240989747 240988776 0.000000e+00 1701.0
20 TraesCS1B01G003000 chr5B 98.251 972 17 0 1 972 656209652 656210623 0.000000e+00 1701.0
21 TraesCS1B01G003000 chr5B 96.599 147 5 0 2967 3113 366060815 366060669 1.610000e-60 244.0
22 TraesCS1B01G003000 chr5B 94.771 153 6 2 2967 3119 677574564 677574714 2.700000e-58 237.0
23 TraesCS1B01G003000 chr2B 98.253 973 16 1 1 972 45708519 45707547 0.000000e+00 1701.0
24 TraesCS1B01G003000 chr2B 98.251 972 17 0 1 972 762831941 762832912 0.000000e+00 1701.0
25 TraesCS1B01G003000 chr2B 94.737 38 2 0 5441 5478 296296519 296296556 6.270000e-05 60.2
26 TraesCS1B01G003000 chr4A 98.152 974 17 1 1 973 731430487 731429514 0.000000e+00 1698.0
27 TraesCS1B01G003000 chr4A 97.222 144 4 0 2967 3110 721738587 721738444 1.610000e-60 244.0
28 TraesCS1B01G003000 chr4A 96.575 146 4 1 2967 3112 724382870 724382726 2.090000e-59 241.0
29 TraesCS1B01G003000 chr4A 92.169 166 10 3 2967 3131 688847402 688847565 1.260000e-56 231.0
30 TraesCS1B01G003000 chr3B 98.154 975 14 2 1 971 777930609 777931583 0.000000e+00 1698.0
31 TraesCS1B01G003000 chr3B 97.887 142 3 0 2967 3108 43242954 43242813 4.480000e-61 246.0
32 TraesCS1B01G003000 chr3B 97.857 140 3 0 2967 3106 24599099 24599238 5.800000e-60 243.0
33 TraesCS1B01G003000 chr3B 94.805 154 6 2 2967 3118 25406826 25406979 7.500000e-59 239.0
34 TraesCS1B01G003000 chr3B 89.474 57 4 2 5419 5475 698423888 698423942 2.900000e-08 71.3
35 TraesCS1B01G003000 chr3B 100.000 37 0 0 5442 5478 362056597 362056561 1.040000e-07 69.4
36 TraesCS1B01G003000 chr3B 95.000 40 0 2 5434 5472 548044127 548044165 1.740000e-05 62.1
37 TraesCS1B01G003000 chr1A 79.482 1506 281 16 3120 4613 1668619 1670108 0.000000e+00 1044.0
38 TraesCS1B01G003000 chr1A 78.659 328 54 11 1017 1332 1666936 1667259 2.740000e-48 204.0
39 TraesCS1B01G003000 chr4B 75.104 1446 294 46 3202 4629 604003686 604005083 2.970000e-172 616.0
40 TraesCS1B01G003000 chr4B 93.210 162 7 4 2967 3125 629046533 629046693 9.710000e-58 235.0
41 TraesCS1B01G003000 chr4D 74.538 1300 266 46 3202 4482 477866573 477867826 1.860000e-139 507.0
42 TraesCS1B01G003000 chr7D 72.181 1499 345 55 3162 4633 18918545 18917092 5.440000e-105 392.0
43 TraesCS1B01G003000 chr6D 75.123 611 130 16 4031 4629 3163031 3163631 3.440000e-67 267.0
44 TraesCS1B01G003000 chr3D 75.616 406 81 13 4199 4597 555302292 555302686 9.920000e-43 185.0
45 TraesCS1B01G003000 chr7B 79.130 115 24 0 4430 4544 693319732 693319618 4.810000e-11 80.5
46 TraesCS1B01G003000 chr7B 79.130 115 24 0 4430 4544 695913617 695913503 4.810000e-11 80.5
47 TraesCS1B01G003000 chr7B 88.889 54 6 0 4429 4482 695913486 695913433 3.750000e-07 67.6
48 TraesCS1B01G003000 chr7B 94.737 38 2 0 5441 5478 637906436 637906399 6.270000e-05 60.2
49 TraesCS1B01G003000 chr7B 100.000 31 0 0 5442 5472 509577840 509577870 2.260000e-04 58.4
50 TraesCS1B01G003000 chr5D 91.304 46 4 0 5427 5472 426489202 426489247 4.850000e-06 63.9
51 TraesCS1B01G003000 chr7A 73.057 193 44 7 4445 4633 700107904 700107716 1.740000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G003000 chr1B 1968181 1973975 5794 False 10702.0 10702 100.0000 1 5795 1 chr1B.!!$F2 5794
1 TraesCS1B01G003000 chr1B 217715328 217716299 971 False 1696.0 1696 98.1480 1 972 1 chr1B.!!$F3 971
2 TraesCS1B01G003000 chr1B 2301337 2305595 4258 True 1422.5 2470 90.8280 976 5452 4 chr1B.!!$R8 4476
3 TraesCS1B01G003000 chr1B 1781945 1783388 1443 False 911.0 911 78.3400 3162 4629 1 chr1B.!!$F1 1467
4 TraesCS1B01G003000 chr1B 2076110 2077491 1381 True 889.0 889 78.4690 3227 4613 1 chr1B.!!$R4 1386
5 TraesCS1B01G003000 chr1B 721903 723361 1458 True 869.0 869 77.6950 3162 4629 1 chr1B.!!$R1 1467
6 TraesCS1B01G003000 chr1B 1844435 1845884 1449 True 861.0 861 77.6650 3162 4629 1 chr1B.!!$R3 1467
7 TraesCS1B01G003000 chr1B 2752876 2754334 1458 True 730.0 730 76.3610 3162 4629 1 chr1B.!!$R6 1467
8 TraesCS1B01G003000 chr1B 2053393 2056569 3176 True 639.0 1048 78.4665 973 4613 2 chr1B.!!$R7 3640
9 TraesCS1B01G003000 chrUn 21792 24301 2509 False 3332.0 3332 90.7520 3264 5772 1 chrUn.!!$F1 2508
10 TraesCS1B01G003000 chr6B 426458403 426459381 978 True 1709.0 1709 98.1610 1 979 1 chr6B.!!$R1 978
11 TraesCS1B01G003000 chr6B 709202330 709203302 972 True 1709.0 1709 98.3560 1 973 1 chr6B.!!$R2 972
12 TraesCS1B01G003000 chr5B 240988776 240989747 971 True 1701.0 1701 98.2530 1 972 1 chr5B.!!$R1 971
13 TraesCS1B01G003000 chr5B 656209652 656210623 971 False 1701.0 1701 98.2510 1 972 1 chr5B.!!$F1 971
14 TraesCS1B01G003000 chr2B 45707547 45708519 972 True 1701.0 1701 98.2530 1 972 1 chr2B.!!$R1 971
15 TraesCS1B01G003000 chr2B 762831941 762832912 971 False 1701.0 1701 98.2510 1 972 1 chr2B.!!$F2 971
16 TraesCS1B01G003000 chr4A 731429514 731430487 973 True 1698.0 1698 98.1520 1 973 1 chr4A.!!$R3 972
17 TraesCS1B01G003000 chr3B 777930609 777931583 974 False 1698.0 1698 98.1540 1 971 1 chr3B.!!$F5 970
18 TraesCS1B01G003000 chr1A 1666936 1670108 3172 False 624.0 1044 79.0705 1017 4613 2 chr1A.!!$F1 3596
19 TraesCS1B01G003000 chr4B 604003686 604005083 1397 False 616.0 616 75.1040 3202 4629 1 chr4B.!!$F1 1427
20 TraesCS1B01G003000 chr4D 477866573 477867826 1253 False 507.0 507 74.5380 3202 4482 1 chr4D.!!$F1 1280
21 TraesCS1B01G003000 chr7D 18917092 18918545 1453 True 392.0 392 72.1810 3162 4633 1 chr7D.!!$R1 1471
22 TraesCS1B01G003000 chr6D 3163031 3163631 600 False 267.0 267 75.1230 4031 4629 1 chr6D.!!$F1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 884 0.466739 TACTAATGAGAGCGGCCCGA 60.467 55.000 7.68 0.00 0.00 5.14 F
1389 1411 1.005630 GCGACAAGCTCTGAGGTGT 60.006 57.895 10.52 10.39 44.04 4.16 F
2986 3276 0.182537 TGGAGGCACATTAATCCCGG 59.817 55.000 0.00 0.00 0.00 5.73 F
3015 3305 0.107361 GAACCGGGACTAATGGGTGG 60.107 60.000 6.32 0.00 31.96 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1994 2275 0.102663 TTTCGGAAAAACAACCCGGC 59.897 50.0 0.00 0.0 43.16 6.13 R
2996 3286 0.107361 CCACCCATTAGTCCCGGTTC 60.107 60.0 0.00 0.0 0.00 3.62 R
4597 4950 0.322098 TCGACAATTTGGATGCCCGT 60.322 50.0 0.78 0.0 34.29 5.28 R
4870 5229 0.599991 CACGAATGCAGCGGGCTATA 60.600 55.0 15.00 0.0 45.15 1.31 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 0.774908 AGGGTCGGTTGGAATTTCCA 59.225 50.000 14.24 14.24 46.61 3.53
100 101 5.577945 GTCAACTTGATGGGCATAATTTGTG 59.422 40.000 0.00 0.00 0.00 3.33
404 405 8.199449 GCACTAAGTAAACCACACCTACATATA 58.801 37.037 0.00 0.00 0.00 0.86
578 585 4.756642 TGCTAACCTTTGTGATCACTTGAG 59.243 41.667 25.55 18.53 0.00 3.02
705 714 2.676822 AGCGAGCTGGACGAAGGA 60.677 61.111 0.00 0.00 0.00 3.36
875 884 0.466739 TACTAATGAGAGCGGCCCGA 60.467 55.000 7.68 0.00 0.00 5.14
900 909 1.405797 CCGTTGGAACCGGCACTAATA 60.406 52.381 0.00 0.00 38.85 0.98
905 914 6.103997 CGTTGGAACCGGCACTAATATATAT 58.896 40.000 0.00 0.00 0.00 0.86
1175 1184 8.942338 TGTATCGAAACTAGCATGATTACTTT 57.058 30.769 0.00 0.00 0.00 2.66
1201 1210 2.657143 AGGTAAGATCTCTCCCGTGTC 58.343 52.381 11.13 0.00 0.00 3.67
1227 1236 1.496857 TGACATCCCTCCCACAAAACA 59.503 47.619 0.00 0.00 0.00 2.83
1235 1244 6.395780 TCCCTCCCACAAAACATAATCTTA 57.604 37.500 0.00 0.00 0.00 2.10
1259 1276 7.385894 AGGAGCTTGTCTATATCTCCATTTT 57.614 36.000 8.99 0.00 44.29 1.82
1389 1411 1.005630 GCGACAAGCTCTGAGGTGT 60.006 57.895 10.52 10.39 44.04 4.16
1565 1745 4.159135 CACTGCTTCCTTTGGCAAATAGAT 59.841 41.667 13.89 0.00 38.02 1.98
1597 1777 4.578105 AGAAAACTTGCTCTGAAACCTCTG 59.422 41.667 0.00 0.00 0.00 3.35
1605 1785 4.098654 TGCTCTGAAACCTCTGTAGCTATC 59.901 45.833 0.00 0.00 31.33 2.08
1609 1789 7.187824 TCTGAAACCTCTGTAGCTATCAATT 57.812 36.000 0.00 0.00 0.00 2.32
1610 1790 7.268586 TCTGAAACCTCTGTAGCTATCAATTC 58.731 38.462 0.00 0.00 0.00 2.17
1611 1791 7.124901 TCTGAAACCTCTGTAGCTATCAATTCT 59.875 37.037 0.00 0.00 0.00 2.40
1644 1831 7.361713 GGTTTCACGATTCATTTGAACCTATGA 60.362 37.037 0.00 0.00 36.80 2.15
1653 1840 9.696917 ATTCATTTGAACCTATGAGTTTTTCAC 57.303 29.630 0.00 0.00 36.28 3.18
1669 1858 8.166422 AGTTTTTCACGGAGATATTTGAAACT 57.834 30.769 0.00 0.00 37.62 2.66
1751 1944 6.423182 ACCATAACATATTTAGTGCACTGGT 58.577 36.000 29.57 19.71 0.00 4.00
1824 2017 6.011122 AGAAGTGATGGCCAAGATCTATTT 57.989 37.500 10.96 0.00 0.00 1.40
1899 2092 4.053295 CACTTCAGCTTGTTGGGATTTTG 58.947 43.478 0.00 0.00 0.00 2.44
1912 2105 3.768757 TGGGATTTTGCTATGGAACCAAG 59.231 43.478 0.00 0.00 0.00 3.61
1916 2109 6.071051 GGGATTTTGCTATGGAACCAAGTTTA 60.071 38.462 0.00 0.00 0.00 2.01
1939 2133 9.757227 TTTAGGATACAAAACAAAGTTTCATGG 57.243 29.630 0.00 0.00 41.41 3.66
2026 2307 3.630204 CGAAATGAGATCGGCCGG 58.370 61.111 27.83 6.80 36.68 6.13
2091 2375 0.752658 GCAGCCAAAGACCAAAAGGT 59.247 50.000 0.00 0.00 0.00 3.50
2118 2402 7.781324 AGAGTGTGGGTTGATTTCAATAAAT 57.219 32.000 0.00 0.00 38.24 1.40
2233 2517 1.358759 CGGTGCATAAATTCGGCCC 59.641 57.895 0.00 0.00 0.00 5.80
2234 2518 1.101049 CGGTGCATAAATTCGGCCCT 61.101 55.000 0.00 0.00 0.00 5.19
2246 2530 1.675310 CGGCCCTTGCACTTGATGA 60.675 57.895 0.00 0.00 40.13 2.92
2320 2605 4.454161 TGATCAAGGGTACATTTGACAACG 59.546 41.667 11.92 0.00 36.56 4.10
2327 2612 5.007921 AGGGTACATTTGACAACGTAAACAC 59.992 40.000 0.00 0.00 0.00 3.32
2401 2686 5.949354 TGTTTCTTGGTTTCTCTCTTTTCCA 59.051 36.000 0.00 0.00 0.00 3.53
2426 2711 2.815503 CACACATTCACAAGATGGCTCA 59.184 45.455 0.00 0.00 0.00 4.26
2430 2715 4.082408 CACATTCACAAGATGGCTCACATT 60.082 41.667 0.00 0.00 40.72 2.71
2527 2812 4.226761 GGTTAATTTGAAGTTGCACCTCG 58.773 43.478 0.00 0.00 0.00 4.63
2568 2853 8.449397 TGGTGAAATGAAACAACTTTTCAAATG 58.551 29.630 3.69 0.00 41.74 2.32
2599 2884 4.537135 ATTCTTGTCTTTCGTGAGCCTA 57.463 40.909 0.00 0.00 0.00 3.93
2770 3057 4.666176 CGAGCGCAAATTTGTACATATGTC 59.334 41.667 19.03 5.06 0.00 3.06
2969 3259 9.965824 GTATTGTTCATCTAAATTAATGGGTGG 57.034 33.333 0.00 0.00 0.00 4.61
2970 3260 8.837099 ATTGTTCATCTAAATTAATGGGTGGA 57.163 30.769 0.00 0.00 0.00 4.02
2971 3261 7.880160 TGTTCATCTAAATTAATGGGTGGAG 57.120 36.000 0.00 0.00 0.00 3.86
2972 3262 6.833416 TGTTCATCTAAATTAATGGGTGGAGG 59.167 38.462 0.00 0.00 0.00 4.30
2973 3263 5.385198 TCATCTAAATTAATGGGTGGAGGC 58.615 41.667 0.00 0.00 0.00 4.70
2974 3264 4.871871 TCTAAATTAATGGGTGGAGGCA 57.128 40.909 0.00 0.00 0.00 4.75
2975 3265 4.532834 TCTAAATTAATGGGTGGAGGCAC 58.467 43.478 0.00 0.00 0.00 5.01
2976 3266 2.917713 AATTAATGGGTGGAGGCACA 57.082 45.000 0.00 0.00 0.00 4.57
2977 3267 3.403228 AATTAATGGGTGGAGGCACAT 57.597 42.857 0.00 0.00 33.22 3.21
2978 3268 2.917713 TTAATGGGTGGAGGCACATT 57.082 45.000 0.00 0.00 43.94 2.71
2979 3269 4.534647 ATTAATGGGTGGAGGCACATTA 57.465 40.909 0.00 0.00 40.35 1.90
2980 3270 2.917713 AATGGGTGGAGGCACATTAA 57.082 45.000 0.00 0.00 40.35 1.40
2981 3271 3.403228 AATGGGTGGAGGCACATTAAT 57.597 42.857 0.00 0.00 40.35 1.40
2982 3272 2.435372 TGGGTGGAGGCACATTAATC 57.565 50.000 0.00 0.00 0.00 1.75
2983 3273 1.064017 TGGGTGGAGGCACATTAATCC 60.064 52.381 0.00 0.00 0.00 3.01
2984 3274 1.692411 GGTGGAGGCACATTAATCCC 58.308 55.000 0.00 0.00 0.00 3.85
2985 3275 1.308998 GTGGAGGCACATTAATCCCG 58.691 55.000 0.00 0.00 0.00 5.14
2986 3276 0.182537 TGGAGGCACATTAATCCCGG 59.817 55.000 0.00 0.00 0.00 5.73
2987 3277 0.182775 GGAGGCACATTAATCCCGGT 59.817 55.000 0.00 0.00 0.00 5.28
2988 3278 1.409661 GGAGGCACATTAATCCCGGTT 60.410 52.381 0.00 0.00 0.00 4.44
2989 3279 1.947456 GAGGCACATTAATCCCGGTTC 59.053 52.381 0.00 0.00 0.00 3.62
2990 3280 1.564348 AGGCACATTAATCCCGGTTCT 59.436 47.619 0.00 0.00 0.00 3.01
2991 3281 2.025321 AGGCACATTAATCCCGGTTCTT 60.025 45.455 0.00 0.00 0.00 2.52
2992 3282 2.099098 GGCACATTAATCCCGGTTCTTG 59.901 50.000 0.00 0.00 0.00 3.02
2993 3283 2.752903 GCACATTAATCCCGGTTCTTGT 59.247 45.455 0.00 0.00 0.00 3.16
2994 3284 3.192633 GCACATTAATCCCGGTTCTTGTT 59.807 43.478 0.00 0.00 0.00 2.83
2995 3285 4.321675 GCACATTAATCCCGGTTCTTGTTT 60.322 41.667 0.00 0.00 0.00 2.83
2996 3286 5.160641 CACATTAATCCCGGTTCTTGTTTG 58.839 41.667 0.00 0.00 0.00 2.93
2997 3287 5.048364 CACATTAATCCCGGTTCTTGTTTGA 60.048 40.000 0.00 0.00 0.00 2.69
2998 3288 5.536916 ACATTAATCCCGGTTCTTGTTTGAA 59.463 36.000 0.00 0.00 0.00 2.69
2999 3289 5.441709 TTAATCCCGGTTCTTGTTTGAAC 57.558 39.130 0.00 0.00 43.88 3.18
3005 3295 2.768833 GTTCTTGTTTGAACCGGGAC 57.231 50.000 6.32 0.00 40.10 4.46
3006 3296 2.294979 GTTCTTGTTTGAACCGGGACT 58.705 47.619 6.32 0.00 40.10 3.85
3007 3297 3.469739 GTTCTTGTTTGAACCGGGACTA 58.530 45.455 6.32 0.00 40.10 2.59
3008 3298 3.842007 TCTTGTTTGAACCGGGACTAA 57.158 42.857 6.32 0.00 0.00 2.24
3009 3299 4.360951 TCTTGTTTGAACCGGGACTAAT 57.639 40.909 6.32 0.00 0.00 1.73
3010 3300 4.069304 TCTTGTTTGAACCGGGACTAATG 58.931 43.478 6.32 0.00 0.00 1.90
3011 3301 2.785562 TGTTTGAACCGGGACTAATGG 58.214 47.619 6.32 0.00 0.00 3.16
3012 3302 2.089201 GTTTGAACCGGGACTAATGGG 58.911 52.381 6.32 0.00 0.00 4.00
3013 3303 1.364269 TTGAACCGGGACTAATGGGT 58.636 50.000 6.32 0.00 0.00 4.51
3014 3304 0.616371 TGAACCGGGACTAATGGGTG 59.384 55.000 6.32 0.00 31.96 4.61
3015 3305 0.107361 GAACCGGGACTAATGGGTGG 60.107 60.000 6.32 0.00 31.96 4.61
3016 3306 0.548197 AACCGGGACTAATGGGTGGA 60.548 55.000 6.32 0.00 31.96 4.02
3017 3307 0.981277 ACCGGGACTAATGGGTGGAG 60.981 60.000 6.32 0.00 0.00 3.86
3018 3308 1.696097 CCGGGACTAATGGGTGGAGG 61.696 65.000 0.00 0.00 0.00 4.30
3019 3309 0.981277 CGGGACTAATGGGTGGAGGT 60.981 60.000 0.00 0.00 0.00 3.85
3020 3310 1.690209 CGGGACTAATGGGTGGAGGTA 60.690 57.143 0.00 0.00 0.00 3.08
3021 3311 2.702748 GGGACTAATGGGTGGAGGTAT 58.297 52.381 0.00 0.00 0.00 2.73
3022 3312 3.053826 GGGACTAATGGGTGGAGGTATT 58.946 50.000 0.00 0.00 0.00 1.89
3023 3313 4.237018 GGGACTAATGGGTGGAGGTATTA 58.763 47.826 0.00 0.00 0.00 0.98
3024 3314 4.286291 GGGACTAATGGGTGGAGGTATTAG 59.714 50.000 0.00 0.00 38.46 1.73
3025 3315 4.906060 GGACTAATGGGTGGAGGTATTAGT 59.094 45.833 7.88 7.88 44.56 2.24
3026 3316 6.080009 GGACTAATGGGTGGAGGTATTAGTA 58.920 44.000 0.00 0.00 42.94 1.82
3027 3317 6.556116 GGACTAATGGGTGGAGGTATTAGTAA 59.444 42.308 0.00 0.00 42.94 2.24
3028 3318 7.370905 ACTAATGGGTGGAGGTATTAGTAAC 57.629 40.000 0.00 0.00 41.81 2.50
3029 3319 4.950205 ATGGGTGGAGGTATTAGTAACG 57.050 45.455 0.00 0.00 0.00 3.18
3030 3320 3.979911 TGGGTGGAGGTATTAGTAACGA 58.020 45.455 0.00 0.00 0.00 3.85
3031 3321 3.701040 TGGGTGGAGGTATTAGTAACGAC 59.299 47.826 0.00 0.00 0.00 4.34
3032 3322 3.068732 GGGTGGAGGTATTAGTAACGACC 59.931 52.174 7.47 7.47 0.00 4.79
3033 3323 3.068732 GGTGGAGGTATTAGTAACGACCC 59.931 52.174 10.80 4.78 31.93 4.46
3034 3324 3.701040 GTGGAGGTATTAGTAACGACCCA 59.299 47.826 10.80 2.82 31.93 4.51
3035 3325 4.343239 GTGGAGGTATTAGTAACGACCCAT 59.657 45.833 10.80 0.00 31.93 4.00
3036 3326 4.964262 TGGAGGTATTAGTAACGACCCATT 59.036 41.667 10.80 0.00 31.93 3.16
3037 3327 6.040842 GTGGAGGTATTAGTAACGACCCATTA 59.959 42.308 10.80 0.00 31.93 1.90
3038 3328 6.266103 TGGAGGTATTAGTAACGACCCATTAG 59.734 42.308 10.80 0.00 31.93 1.73
3039 3329 6.266330 GGAGGTATTAGTAACGACCCATTAGT 59.734 42.308 10.80 0.00 31.93 2.24
3040 3330 7.282332 AGGTATTAGTAACGACCCATTAGTC 57.718 40.000 10.80 0.00 31.93 2.59
3041 3331 6.266330 AGGTATTAGTAACGACCCATTAGTCC 59.734 42.308 10.80 0.00 32.91 3.85
3042 3332 5.541953 ATTAGTAACGACCCATTAGTCCC 57.458 43.478 0.00 0.00 32.91 4.46
3043 3333 1.753073 AGTAACGACCCATTAGTCCCG 59.247 52.381 0.00 0.00 32.91 5.14
3044 3334 1.113788 TAACGACCCATTAGTCCCGG 58.886 55.000 0.00 0.00 32.91 5.73
3045 3335 0.906282 AACGACCCATTAGTCCCGGT 60.906 55.000 0.00 0.00 32.91 5.28
3046 3336 0.906282 ACGACCCATTAGTCCCGGTT 60.906 55.000 0.00 0.00 32.91 4.44
3047 3337 0.179092 CGACCCATTAGTCCCGGTTC 60.179 60.000 0.00 0.00 32.91 3.62
3048 3338 0.906775 GACCCATTAGTCCCGGTTCA 59.093 55.000 0.00 0.00 0.00 3.18
3049 3339 1.489230 GACCCATTAGTCCCGGTTCAT 59.511 52.381 0.00 0.00 0.00 2.57
3050 3340 1.211949 ACCCATTAGTCCCGGTTCATG 59.788 52.381 0.00 0.00 0.00 3.07
3051 3341 1.488812 CCCATTAGTCCCGGTTCATGA 59.511 52.381 0.00 0.00 0.00 3.07
3052 3342 2.092646 CCCATTAGTCCCGGTTCATGAA 60.093 50.000 3.38 3.38 0.00 2.57
3053 3343 2.943033 CCATTAGTCCCGGTTCATGAAC 59.057 50.000 27.16 27.16 40.45 3.18
3065 3355 3.007635 GTTCATGAACCGGGACTAAAGG 58.992 50.000 25.26 0.00 35.36 3.11
3066 3356 1.065709 TCATGAACCGGGACTAAAGGC 60.066 52.381 6.32 0.00 0.00 4.35
3067 3357 0.255033 ATGAACCGGGACTAAAGGCC 59.745 55.000 6.32 0.00 0.00 5.19
3068 3358 1.077930 GAACCGGGACTAAAGGCCC 60.078 63.158 11.29 11.29 41.11 5.80
3069 3359 1.540617 AACCGGGACTAAAGGCCCT 60.541 57.895 18.97 0.00 42.40 5.19
3070 3360 1.559965 AACCGGGACTAAAGGCCCTC 61.560 60.000 18.97 0.00 42.40 4.30
3071 3361 1.993391 CCGGGACTAAAGGCCCTCA 60.993 63.158 18.97 0.00 42.40 3.86
3072 3362 1.221021 CGGGACTAAAGGCCCTCAC 59.779 63.158 18.97 0.00 42.40 3.51
3073 3363 1.221021 GGGACTAAAGGCCCTCACG 59.779 63.158 14.19 0.00 41.31 4.35
3074 3364 1.262640 GGGACTAAAGGCCCTCACGA 61.263 60.000 14.19 0.00 41.31 4.35
3075 3365 0.611714 GGACTAAAGGCCCTCACGAA 59.388 55.000 0.00 0.00 0.00 3.85
3076 3366 1.675116 GGACTAAAGGCCCTCACGAAC 60.675 57.143 0.00 0.00 0.00 3.95
3077 3367 0.323957 ACTAAAGGCCCTCACGAACC 59.676 55.000 0.00 0.00 0.00 3.62
3078 3368 0.739813 CTAAAGGCCCTCACGAACCG 60.740 60.000 0.00 0.00 0.00 4.44
3079 3369 2.175035 TAAAGGCCCTCACGAACCGG 62.175 60.000 0.00 0.00 0.00 5.28
3082 3372 4.754667 GCCCTCACGAACCGGGAC 62.755 72.222 6.32 0.00 40.55 4.46
3083 3373 2.995574 CCCTCACGAACCGGGACT 60.996 66.667 6.32 0.00 40.55 3.85
3084 3374 1.679977 CCCTCACGAACCGGGACTA 60.680 63.158 6.32 0.00 40.55 2.59
3085 3375 1.041447 CCCTCACGAACCGGGACTAT 61.041 60.000 6.32 0.00 40.55 2.12
3086 3376 0.822164 CCTCACGAACCGGGACTATT 59.178 55.000 6.32 0.00 32.99 1.73
3087 3377 2.026641 CCTCACGAACCGGGACTATTA 58.973 52.381 6.32 0.00 32.99 0.98
3088 3378 2.626743 CCTCACGAACCGGGACTATTAT 59.373 50.000 6.32 0.00 32.99 1.28
3089 3379 3.552273 CCTCACGAACCGGGACTATTATG 60.552 52.174 6.32 0.00 32.99 1.90
3090 3380 3.025978 TCACGAACCGGGACTATTATGT 58.974 45.455 6.32 0.00 32.99 2.29
3091 3381 3.120792 CACGAACCGGGACTATTATGTG 58.879 50.000 6.32 0.00 28.17 3.21
3092 3382 2.762327 ACGAACCGGGACTATTATGTGT 59.238 45.455 6.32 0.00 0.00 3.72
3093 3383 3.196254 ACGAACCGGGACTATTATGTGTT 59.804 43.478 6.32 0.00 0.00 3.32
3094 3384 4.186159 CGAACCGGGACTATTATGTGTTT 58.814 43.478 6.32 0.00 0.00 2.83
3095 3385 4.632688 CGAACCGGGACTATTATGTGTTTT 59.367 41.667 6.32 0.00 0.00 2.43
3096 3386 5.122711 CGAACCGGGACTATTATGTGTTTTT 59.877 40.000 6.32 0.00 0.00 1.94
3236 3526 2.010145 AGCGATGCGTCAAATACTGT 57.990 45.000 6.75 0.00 0.00 3.55
3384 3674 6.148315 TCAAGAGTTAGTGTCATGCTCATTTG 59.852 38.462 0.00 0.00 0.00 2.32
3386 3676 6.701340 AGAGTTAGTGTCATGCTCATTTGTA 58.299 36.000 0.00 0.00 0.00 2.41
3456 3770 5.912360 TCTGCTGCATGATTTATTAGACG 57.088 39.130 1.31 0.00 0.00 4.18
3499 3813 4.206477 TCAGAATCGAGAATGCAAGGAA 57.794 40.909 0.00 0.00 0.00 3.36
3675 3989 5.049129 GTGGAGGAAAAAGTCATTGAGAGTG 60.049 44.000 0.00 0.00 0.00 3.51
3719 4033 1.328279 GGGTACTGGCTGTTGCTTTT 58.672 50.000 1.31 0.00 39.59 2.27
4092 4439 2.424601 CGTGGCAATCTGGTGATCAATT 59.575 45.455 0.00 0.00 31.51 2.32
4221 4574 1.949525 GCAGTCCAGAAGTTGAAGCAA 59.050 47.619 0.00 0.00 0.00 3.91
4360 4713 7.042725 GGACCTGCAAAATCTTGAGTTAAAAAC 60.043 37.037 0.00 0.00 34.14 2.43
4441 4794 2.687418 CTTGTGGACTGCAGCTGGGT 62.687 60.000 17.12 0.00 0.00 4.51
4482 4835 0.671781 ACACCTCACATCGCTCAAGC 60.672 55.000 0.00 0.00 37.78 4.01
4485 4838 1.339438 ACCTCACATCGCTCAAGCATT 60.339 47.619 2.50 0.00 42.21 3.56
4498 4851 5.008415 CGCTCAAGCATTTGGATATCTCTTT 59.992 40.000 2.05 0.00 42.21 2.52
4620 4973 2.231235 GGGCATCCAAATTGTCGAAAGT 59.769 45.455 0.00 0.00 0.00 2.66
4636 4989 2.254546 AAGTTGGAGCACGTTCATCA 57.745 45.000 0.00 0.00 0.00 3.07
4742 5097 6.017934 TCCGTAATATTTTTGATCTGCTGCTC 60.018 38.462 0.00 0.00 0.00 4.26
4744 5099 6.017605 CGTAATATTTTTGATCTGCTGCTCCT 60.018 38.462 0.00 0.00 0.00 3.69
4745 5100 6.388435 AATATTTTTGATCTGCTGCTCCTC 57.612 37.500 0.00 0.00 0.00 3.71
4746 5101 3.430042 TTTTTGATCTGCTGCTCCTCT 57.570 42.857 0.00 0.00 0.00 3.69
4747 5102 2.398252 TTTGATCTGCTGCTCCTCTG 57.602 50.000 0.00 0.00 0.00 3.35
4748 5103 0.107800 TTGATCTGCTGCTCCTCTGC 60.108 55.000 0.00 0.00 39.73 4.26
4749 5104 0.976590 TGATCTGCTGCTCCTCTGCT 60.977 55.000 0.00 0.00 39.95 4.24
4750 5105 0.178533 GATCTGCTGCTCCTCTGCTT 59.821 55.000 0.00 0.00 39.95 3.91
4751 5106 1.411977 GATCTGCTGCTCCTCTGCTTA 59.588 52.381 0.00 0.00 39.95 3.09
4752 5107 1.269958 TCTGCTGCTCCTCTGCTTAA 58.730 50.000 0.00 0.00 39.95 1.85
4756 5111 3.535561 TGCTGCTCCTCTGCTTAATTAC 58.464 45.455 0.00 0.00 39.95 1.89
4759 5114 3.782046 TGCTCCTCTGCTTAATTACGTC 58.218 45.455 0.00 0.00 0.00 4.34
4860 5215 2.097629 TCACGAGAGGCATCTTAAGACG 59.902 50.000 7.48 7.55 35.30 4.18
4864 5219 3.449632 GAGAGGCATCTTAAGACGGTTC 58.550 50.000 7.48 4.26 35.30 3.62
4870 5229 5.476945 AGGCATCTTAAGACGGTTCAAAAAT 59.523 36.000 7.48 0.00 0.00 1.82
4893 5258 2.511373 CCGCTGCATTCGTGGCTA 60.511 61.111 0.00 0.00 0.00 3.93
4923 5288 1.269998 CTACTATCTGGTGGGCGCTAC 59.730 57.143 7.64 7.11 0.00 3.58
5020 5385 8.356533 ACTTGTGATGTTCAATTTGATTTGTC 57.643 30.769 0.00 0.00 0.00 3.18
5025 5390 9.121517 GTGATGTTCAATTTGATTTGTCAGTAG 57.878 33.333 0.00 0.00 0.00 2.57
5038 5403 9.201989 TGATTTGTCAGTAGAATAGTATGGAGT 57.798 33.333 0.00 0.00 0.00 3.85
5068 5433 8.043710 AGTACTATTCAGTTTCAAGATCTTGGG 58.956 37.037 30.33 16.90 37.40 4.12
5075 5440 8.089625 TCAGTTTCAAGATCTTGGGTATATGA 57.910 34.615 30.33 22.74 40.78 2.15
5099 5464 3.257393 CTCCAATTCTGTTGAGGAGTCG 58.743 50.000 0.00 0.00 40.71 4.18
5101 5466 2.738846 CCAATTCTGTTGAGGAGTCGTG 59.261 50.000 0.00 0.00 0.00 4.35
5106 5471 2.034685 TCTGTTGAGGAGTCGTGTCTTG 59.965 50.000 0.00 0.00 0.00 3.02
5109 5474 2.989840 GTTGAGGAGTCGTGTCTTGATG 59.010 50.000 0.00 0.00 0.00 3.07
5110 5475 1.546029 TGAGGAGTCGTGTCTTGATGG 59.454 52.381 0.00 0.00 0.00 3.51
5111 5476 1.819288 GAGGAGTCGTGTCTTGATGGA 59.181 52.381 0.00 0.00 0.00 3.41
5236 5602 5.237561 TCCTTGAACGAACGAATGATTTTCA 59.762 36.000 0.14 0.00 0.00 2.69
5322 5688 4.258543 TGAATGGACGGACAGAAATAACC 58.741 43.478 0.00 0.00 0.00 2.85
5348 5714 3.185246 CCAGCGAGGTCATATCAAAGT 57.815 47.619 0.00 0.00 0.00 2.66
5351 5717 3.801050 CAGCGAGGTCATATCAAAGTCAG 59.199 47.826 0.00 0.00 0.00 3.51
5377 5743 6.045955 TGCACGTTCTAACAATATATGCTGA 58.954 36.000 0.00 0.00 0.00 4.26
5396 5762 3.981211 TGAGCTCAAGGAATTTTGCAAC 58.019 40.909 15.67 0.00 0.00 4.17
5403 5769 4.588106 TCAAGGAATTTTGCAACTGATCCA 59.412 37.500 17.30 0.00 0.00 3.41
5417 5783 3.822735 ACTGATCCAGTGAACACATTTGG 59.177 43.478 7.68 6.56 43.63 3.28
5419 5785 4.074259 TGATCCAGTGAACACATTTGGAG 58.926 43.478 15.74 0.00 0.00 3.86
5429 5795 6.092259 GTGAACACATTTGGAGATGTAGTACC 59.908 42.308 0.00 0.00 38.15 3.34
5529 5910 5.888161 AGAAGCTGATACACTTATTTTGGGG 59.112 40.000 0.00 0.00 0.00 4.96
5534 5915 6.086011 TGATACACTTATTTTGGGGTGGAT 57.914 37.500 0.00 0.00 36.13 3.41
5536 5917 3.440127 ACACTTATTTTGGGGTGGATGG 58.560 45.455 0.00 0.00 34.42 3.51
5562 5943 5.946942 ATAATTTGACAGCTCTCTCTCCA 57.053 39.130 0.00 0.00 0.00 3.86
5563 5944 3.891422 ATTTGACAGCTCTCTCTCCAG 57.109 47.619 0.00 0.00 0.00 3.86
5591 5972 3.384146 TGTTCTTGTGTGCATCCATTTGT 59.616 39.130 0.00 0.00 0.00 2.83
5611 5992 0.390340 GCAAGAGTGCGACAGATGGA 60.390 55.000 0.00 0.00 41.93 3.41
5642 6023 3.668447 TCTTCAGTGATTTGACAGCTCC 58.332 45.455 0.00 0.00 0.00 4.70
5643 6024 3.326006 TCTTCAGTGATTTGACAGCTCCT 59.674 43.478 0.00 0.00 0.00 3.69
5645 6026 2.634453 TCAGTGATTTGACAGCTCCTCA 59.366 45.455 0.00 0.00 0.00 3.86
5646 6027 3.262660 TCAGTGATTTGACAGCTCCTCAT 59.737 43.478 0.00 0.00 0.00 2.90
5647 6028 3.622163 CAGTGATTTGACAGCTCCTCATC 59.378 47.826 0.00 0.00 0.00 2.92
5648 6029 3.262660 AGTGATTTGACAGCTCCTCATCA 59.737 43.478 0.00 0.00 0.00 3.07
5650 6031 2.775911 TTTGACAGCTCCTCATCAGG 57.224 50.000 0.00 0.00 42.01 3.86
5651 6032 0.251354 TTGACAGCTCCTCATCAGGC 59.749 55.000 0.00 0.00 40.12 4.85
5652 6033 0.616964 TGACAGCTCCTCATCAGGCT 60.617 55.000 0.00 0.00 40.12 4.58
5654 6035 1.759445 GACAGCTCCTCATCAGGCTTA 59.241 52.381 0.00 0.00 40.12 3.09
5656 6037 2.104451 ACAGCTCCTCATCAGGCTTATG 59.896 50.000 2.16 2.16 40.12 1.90
5657 6038 2.367894 CAGCTCCTCATCAGGCTTATGA 59.632 50.000 10.73 10.73 40.12 2.15
5659 6040 3.071312 AGCTCCTCATCAGGCTTATGAAG 59.929 47.826 12.15 8.90 40.12 3.02
5660 6041 3.181456 GCTCCTCATCAGGCTTATGAAGT 60.181 47.826 12.15 0.00 40.12 3.01
5661 6042 4.039730 GCTCCTCATCAGGCTTATGAAGTA 59.960 45.833 12.15 1.18 40.12 2.24
5662 6043 5.537188 CTCCTCATCAGGCTTATGAAGTAC 58.463 45.833 12.15 0.00 40.12 2.73
5663 6044 5.211973 TCCTCATCAGGCTTATGAAGTACT 58.788 41.667 12.15 0.00 40.12 2.73
5664 6045 6.373759 TCCTCATCAGGCTTATGAAGTACTA 58.626 40.000 12.15 0.00 40.12 1.82
5665 6046 6.265649 TCCTCATCAGGCTTATGAAGTACTAC 59.734 42.308 12.15 0.00 40.12 2.73
5666 6047 6.040955 CCTCATCAGGCTTATGAAGTACTACA 59.959 42.308 12.15 0.00 33.13 2.74
5667 6048 7.043961 TCATCAGGCTTATGAAGTACTACAG 57.956 40.000 8.88 0.00 30.52 2.74
5668 6049 5.263968 TCAGGCTTATGAAGTACTACAGC 57.736 43.478 0.00 0.00 0.00 4.40
5669 6050 4.709886 TCAGGCTTATGAAGTACTACAGCA 59.290 41.667 0.00 0.00 0.00 4.41
5670 6051 4.806247 CAGGCTTATGAAGTACTACAGCAC 59.194 45.833 0.00 0.00 0.00 4.40
5671 6052 4.466370 AGGCTTATGAAGTACTACAGCACA 59.534 41.667 0.00 0.00 0.00 4.57
5673 6054 6.323996 AGGCTTATGAAGTACTACAGCACATA 59.676 38.462 0.00 0.00 0.00 2.29
5674 6055 6.421202 GGCTTATGAAGTACTACAGCACATAC 59.579 42.308 0.00 0.00 0.00 2.39
5675 6056 7.203910 GCTTATGAAGTACTACAGCACATACT 58.796 38.462 0.00 0.00 0.00 2.12
5676 6057 7.380065 GCTTATGAAGTACTACAGCACATACTC 59.620 40.741 0.00 0.00 0.00 2.59
5677 6058 8.521170 TTATGAAGTACTACAGCACATACTCT 57.479 34.615 0.00 0.00 0.00 3.24
5678 6059 6.835819 TGAAGTACTACAGCACATACTCTT 57.164 37.500 0.00 0.00 0.00 2.85
5679 6060 6.853720 TGAAGTACTACAGCACATACTCTTC 58.146 40.000 0.00 0.00 0.00 2.87
5681 6062 6.443934 AGTACTACAGCACATACTCTTCAG 57.556 41.667 0.00 0.00 0.00 3.02
5682 6063 6.181190 AGTACTACAGCACATACTCTTCAGA 58.819 40.000 0.00 0.00 0.00 3.27
5683 6064 6.831353 AGTACTACAGCACATACTCTTCAGAT 59.169 38.462 0.00 0.00 0.00 2.90
5685 6066 6.336566 ACTACAGCACATACTCTTCAGATTG 58.663 40.000 0.00 0.00 0.00 2.67
5686 6067 3.937706 ACAGCACATACTCTTCAGATTGC 59.062 43.478 0.00 0.00 0.00 3.56
5688 6069 4.034163 CAGCACATACTCTTCAGATTGCAG 59.966 45.833 0.00 0.00 0.00 4.41
5696 6086 4.202253 ACTCTTCAGATTGCAGTACACACA 60.202 41.667 0.00 0.00 0.00 3.72
5698 6088 5.122519 TCTTCAGATTGCAGTACACACAAA 58.877 37.500 0.00 0.00 0.00 2.83
5716 6106 5.049680 ACACAAACACATAATCGTCTTCACC 60.050 40.000 0.00 0.00 0.00 4.02
5722 6112 6.173339 ACACATAATCGTCTTCACCAATCTT 58.827 36.000 0.00 0.00 0.00 2.40
5728 6118 4.307432 TCGTCTTCACCAATCTTCACTTC 58.693 43.478 0.00 0.00 0.00 3.01
5729 6119 3.433615 CGTCTTCACCAATCTTCACTTCC 59.566 47.826 0.00 0.00 0.00 3.46
5773 6163 4.090057 GCCGCCGCAGTCTTGAAC 62.090 66.667 0.00 0.00 34.03 3.18
5774 6164 2.357517 CCGCCGCAGTCTTGAACT 60.358 61.111 0.00 0.00 39.44 3.01
5775 6165 1.961277 CCGCCGCAGTCTTGAACTT 60.961 57.895 0.00 0.00 35.45 2.66
5776 6166 1.205064 CGCCGCAGTCTTGAACTTG 59.795 57.895 0.00 0.00 35.45 3.16
5777 6167 1.576421 GCCGCAGTCTTGAACTTGG 59.424 57.895 0.00 0.00 35.45 3.61
5778 6168 1.576421 CCGCAGTCTTGAACTTGGC 59.424 57.895 0.00 0.00 35.45 4.52
5779 6169 1.165907 CCGCAGTCTTGAACTTGGCA 61.166 55.000 0.00 0.00 35.45 4.92
5780 6170 0.662619 CGCAGTCTTGAACTTGGCAA 59.337 50.000 0.00 0.00 35.45 4.52
5781 6171 1.597937 CGCAGTCTTGAACTTGGCAAC 60.598 52.381 0.00 0.00 35.45 4.17
5782 6172 1.678101 GCAGTCTTGAACTTGGCAACT 59.322 47.619 0.00 0.00 35.45 3.16
5783 6173 2.099756 GCAGTCTTGAACTTGGCAACTT 59.900 45.455 0.00 0.00 35.45 2.66
5784 6174 3.699067 CAGTCTTGAACTTGGCAACTTG 58.301 45.455 0.00 0.00 35.45 3.16
5785 6175 2.099756 AGTCTTGAACTTGGCAACTTGC 59.900 45.455 5.08 5.08 37.56 4.01
5786 6176 4.436006 AGTCTTGAACTTGGCAACTTGCA 61.436 43.478 15.61 0.00 39.38 4.08
5787 6177 6.225926 AGTCTTGAACTTGGCAACTTGCAG 62.226 45.833 15.61 7.70 39.38 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 8.447787 ACTATTTGTTGCATTTCGTGTTTATC 57.552 30.769 0.00 0.00 0.00 1.75
404 405 8.514330 TGAGGTCAAAATAACACTTAGTTTGT 57.486 30.769 12.24 0.00 45.91 2.83
578 585 0.325577 ATTTGAAGGCCCCCATCCAC 60.326 55.000 0.00 0.00 0.00 4.02
705 714 9.203163 GTACTATAGGTCCTCCTGCATATAAAT 57.797 37.037 4.43 0.00 44.81 1.40
875 884 2.660802 CCGGTTCCAACGGCTAGT 59.339 61.111 0.00 0.00 45.34 2.57
900 909 8.482943 TGTATTAGAGCCGGCACAAATATATAT 58.517 33.333 31.54 1.71 0.00 0.86
905 914 4.409718 TGTATTAGAGCCGGCACAAATA 57.590 40.909 31.54 23.26 0.00 1.40
1175 1184 6.183361 ACACGGGAGAGATCTTACCTTCTATA 60.183 42.308 15.43 0.00 0.00 1.31
1177 1186 4.079901 ACACGGGAGAGATCTTACCTTCTA 60.080 45.833 15.43 0.00 0.00 2.10
1201 1210 1.142936 TGGGAGGGATGTCATGGATG 58.857 55.000 0.00 0.00 0.00 3.51
1235 1244 7.071698 TGAAAATGGAGATATAGACAAGCTCCT 59.928 37.037 8.66 0.00 44.23 3.69
1248 1265 7.039152 TGGAGCAACAAATTGAAAATGGAGATA 60.039 33.333 0.00 0.00 38.15 1.98
1259 1276 3.057315 GCTAGCTTGGAGCAACAAATTGA 60.057 43.478 7.70 0.00 45.56 2.57
1309 1330 6.822676 TGAAGCATTTTTCACCTGTTCAAATT 59.177 30.769 0.00 0.00 32.39 1.82
1372 1393 0.032678 ACACACCTCAGAGCTTGTCG 59.967 55.000 0.00 0.00 0.00 4.35
1389 1411 4.503910 ACTGATATGTTTAGCTGCGAACA 58.496 39.130 20.88 20.88 39.78 3.18
1440 1462 8.952278 TCAAATGTTAACTATTTCCGTAAGCAT 58.048 29.630 7.22 0.00 0.00 3.79
1496 1613 8.912787 AACAATCGTGTAAATTTAACAACACA 57.087 26.923 17.68 4.41 41.79 3.72
1565 1745 5.012046 TCAGAGCAAGTTTTCTAGGATGTCA 59.988 40.000 0.00 0.00 0.00 3.58
1597 1777 8.494016 AAACCAACACTAGAATTGATAGCTAC 57.506 34.615 0.00 0.00 0.00 3.58
1605 1785 5.666969 TCGTGAAACCAACACTAGAATTG 57.333 39.130 0.00 0.00 36.29 2.32
1609 1789 4.951254 TGAATCGTGAAACCAACACTAGA 58.049 39.130 0.00 0.00 36.29 2.43
1610 1790 5.862924 ATGAATCGTGAAACCAACACTAG 57.137 39.130 0.00 0.00 36.29 2.57
1611 1791 6.261158 TCAAATGAATCGTGAAACCAACACTA 59.739 34.615 0.00 0.00 36.29 2.74
1644 1831 8.166422 AGTTTCAAATATCTCCGTGAAAAACT 57.834 30.769 0.00 0.00 40.58 2.66
1700 1889 6.225981 AGCAAAGTTGGAGTCTTCAAAAAT 57.774 33.333 0.00 0.00 0.00 1.82
1751 1944 6.259167 GGTGCATATCCGTTACACAGATTTAA 59.741 38.462 0.00 0.00 32.89 1.52
1874 2067 1.064758 TCCCAACAAGCTGAAGTGTGT 60.065 47.619 0.00 0.00 0.00 3.72
1899 2092 6.354130 TGTATCCTAAACTTGGTTCCATAGC 58.646 40.000 0.00 0.00 0.00 2.97
1916 2109 7.595819 TCCATGAAACTTTGTTTTGTATCCT 57.404 32.000 0.00 0.00 0.00 3.24
1975 2169 5.475719 CCGGCGGTTTAATTATCTCATCTA 58.524 41.667 19.97 0.00 0.00 1.98
1977 2171 3.435671 CCCGGCGGTTTAATTATCTCATC 59.564 47.826 26.32 0.00 0.00 2.92
1994 2275 0.102663 TTTCGGAAAAACAACCCGGC 59.897 50.000 0.00 0.00 43.16 6.13
2022 2303 0.988832 TATCAATATCCACCCCCGGC 59.011 55.000 0.00 0.00 0.00 6.13
2024 2305 4.890581 TGTTTTTATCAATATCCACCCCCG 59.109 41.667 0.00 0.00 0.00 5.73
2026 2307 8.079809 CGTTATGTTTTTATCAATATCCACCCC 58.920 37.037 0.00 0.00 0.00 4.95
2056 2337 4.465886 TGGCTGCTACTAGTTTTGGAAAA 58.534 39.130 0.00 0.00 0.00 2.29
2064 2348 2.637872 TGGTCTTTGGCTGCTACTAGTT 59.362 45.455 0.00 0.00 0.00 2.24
2066 2350 3.334583 TTGGTCTTTGGCTGCTACTAG 57.665 47.619 0.00 0.00 0.00 2.57
2091 2375 5.560722 TTGAAATCAACCCACACTCTAGA 57.439 39.130 0.00 0.00 0.00 2.43
2118 2402 2.054232 TTGCCGAAACAACCCTGTAA 57.946 45.000 0.00 0.00 33.45 2.41
2233 2517 4.629200 GGTAGAGAACTCATCAAGTGCAAG 59.371 45.833 4.64 0.00 38.58 4.01
2234 2518 4.284490 AGGTAGAGAACTCATCAAGTGCAA 59.716 41.667 4.64 0.00 38.58 4.08
2276 2561 7.488792 TGATCAATGAACGGCTCAAATTAAATG 59.511 33.333 0.00 0.00 37.67 2.32
2378 2663 6.451064 TGGAAAAGAGAGAAACCAAGAAAC 57.549 37.500 0.00 0.00 0.00 2.78
2401 2686 3.696051 GCCATCTTGTGAATGTGTGGTAT 59.304 43.478 0.00 0.00 0.00 2.73
2543 2828 8.663911 TCATTTGAAAAGTTGTTTCATTTCACC 58.336 29.630 2.58 0.00 40.40 4.02
2571 2856 8.398665 GGCTCACGAAAGACAAGAATTATTATT 58.601 33.333 0.00 0.00 0.00 1.40
2573 2858 7.103641 AGGCTCACGAAAGACAAGAATTATTA 58.896 34.615 0.00 0.00 0.00 0.98
2582 2867 7.681939 AAATTTATAGGCTCACGAAAGACAA 57.318 32.000 0.00 0.00 0.00 3.18
2586 2871 7.645340 CCATGAAAATTTATAGGCTCACGAAAG 59.355 37.037 0.00 0.00 0.00 2.62
2590 2875 6.618287 TCCATGAAAATTTATAGGCTCACG 57.382 37.500 0.00 0.00 0.00 4.35
2680 2966 7.132213 GCACCTAAAAGAAAAAGAAAAATGCC 58.868 34.615 0.00 0.00 0.00 4.40
2923 3213 2.551887 ACAGTGTCATTTGTAATGCGCA 59.448 40.909 14.96 14.96 0.00 6.09
2961 3251 2.917713 TTAATGTGCCTCCACCCATT 57.082 45.000 0.00 0.00 41.35 3.16
2962 3252 2.424812 GGATTAATGTGCCTCCACCCAT 60.425 50.000 0.00 0.00 41.35 4.00
2963 3253 1.064017 GGATTAATGTGCCTCCACCCA 60.064 52.381 0.00 0.00 41.35 4.51
2964 3254 1.692411 GGATTAATGTGCCTCCACCC 58.308 55.000 0.00 0.00 41.35 4.61
2965 3255 1.692411 GGGATTAATGTGCCTCCACC 58.308 55.000 0.00 0.00 41.35 4.61
2966 3256 1.308998 CGGGATTAATGTGCCTCCAC 58.691 55.000 0.00 0.00 42.40 4.02
2967 3257 0.182537 CCGGGATTAATGTGCCTCCA 59.817 55.000 0.00 0.00 0.00 3.86
2968 3258 0.182775 ACCGGGATTAATGTGCCTCC 59.817 55.000 6.32 0.00 0.00 4.30
2969 3259 1.947456 GAACCGGGATTAATGTGCCTC 59.053 52.381 6.32 0.00 0.00 4.70
2970 3260 1.564348 AGAACCGGGATTAATGTGCCT 59.436 47.619 6.32 0.00 0.00 4.75
2971 3261 2.052782 AGAACCGGGATTAATGTGCC 57.947 50.000 6.32 0.00 0.00 5.01
2972 3262 2.752903 ACAAGAACCGGGATTAATGTGC 59.247 45.455 6.32 0.00 0.00 4.57
2973 3263 5.048364 TCAAACAAGAACCGGGATTAATGTG 60.048 40.000 6.32 0.00 0.00 3.21
2974 3264 5.074115 TCAAACAAGAACCGGGATTAATGT 58.926 37.500 6.32 0.00 0.00 2.71
2975 3265 5.637006 TCAAACAAGAACCGGGATTAATG 57.363 39.130 6.32 0.00 0.00 1.90
2976 3266 6.020971 GTTCAAACAAGAACCGGGATTAAT 57.979 37.500 6.32 0.00 41.52 1.40
2977 3267 5.441709 GTTCAAACAAGAACCGGGATTAA 57.558 39.130 6.32 0.00 41.52 1.40
2986 3276 2.294979 AGTCCCGGTTCAAACAAGAAC 58.705 47.619 0.00 0.00 45.50 3.01
2987 3277 2.721425 AGTCCCGGTTCAAACAAGAA 57.279 45.000 0.00 0.00 0.00 2.52
2988 3278 3.842007 TTAGTCCCGGTTCAAACAAGA 57.158 42.857 0.00 0.00 0.00 3.02
2989 3279 3.190535 CCATTAGTCCCGGTTCAAACAAG 59.809 47.826 0.00 0.00 0.00 3.16
2990 3280 3.150767 CCATTAGTCCCGGTTCAAACAA 58.849 45.455 0.00 0.00 0.00 2.83
2991 3281 2.553466 CCCATTAGTCCCGGTTCAAACA 60.553 50.000 0.00 0.00 0.00 2.83
2992 3282 2.089201 CCCATTAGTCCCGGTTCAAAC 58.911 52.381 0.00 0.00 0.00 2.93
2993 3283 1.706305 ACCCATTAGTCCCGGTTCAAA 59.294 47.619 0.00 0.00 0.00 2.69
2994 3284 1.003812 CACCCATTAGTCCCGGTTCAA 59.996 52.381 0.00 0.00 0.00 2.69
2995 3285 0.616371 CACCCATTAGTCCCGGTTCA 59.384 55.000 0.00 0.00 0.00 3.18
2996 3286 0.107361 CCACCCATTAGTCCCGGTTC 60.107 60.000 0.00 0.00 0.00 3.62
2997 3287 0.548197 TCCACCCATTAGTCCCGGTT 60.548 55.000 0.00 0.00 0.00 4.44
2998 3288 0.981277 CTCCACCCATTAGTCCCGGT 60.981 60.000 0.00 0.00 0.00 5.28
2999 3289 1.696097 CCTCCACCCATTAGTCCCGG 61.696 65.000 0.00 0.00 0.00 5.73
3000 3290 0.981277 ACCTCCACCCATTAGTCCCG 60.981 60.000 0.00 0.00 0.00 5.14
3001 3291 2.185663 TACCTCCACCCATTAGTCCC 57.814 55.000 0.00 0.00 0.00 4.46
3002 3292 4.906060 ACTAATACCTCCACCCATTAGTCC 59.094 45.833 0.00 0.00 39.01 3.85
3003 3293 7.440198 GTTACTAATACCTCCACCCATTAGTC 58.560 42.308 8.63 0.00 41.17 2.59
3004 3294 6.041296 CGTTACTAATACCTCCACCCATTAGT 59.959 42.308 9.89 9.89 43.28 2.24
3005 3295 6.266103 TCGTTACTAATACCTCCACCCATTAG 59.734 42.308 0.00 0.00 37.13 1.73
3006 3296 6.040842 GTCGTTACTAATACCTCCACCCATTA 59.959 42.308 0.00 0.00 0.00 1.90
3007 3297 4.964262 TCGTTACTAATACCTCCACCCATT 59.036 41.667 0.00 0.00 0.00 3.16
3008 3298 4.343239 GTCGTTACTAATACCTCCACCCAT 59.657 45.833 0.00 0.00 0.00 4.00
3009 3299 3.701040 GTCGTTACTAATACCTCCACCCA 59.299 47.826 0.00 0.00 0.00 4.51
3010 3300 3.068732 GGTCGTTACTAATACCTCCACCC 59.931 52.174 0.00 0.00 0.00 4.61
3011 3301 3.068732 GGGTCGTTACTAATACCTCCACC 59.931 52.174 0.00 0.00 32.38 4.61
3012 3302 3.701040 TGGGTCGTTACTAATACCTCCAC 59.299 47.826 0.00 0.00 32.38 4.02
3013 3303 3.979911 TGGGTCGTTACTAATACCTCCA 58.020 45.455 0.00 0.00 32.38 3.86
3014 3304 5.541953 AATGGGTCGTTACTAATACCTCC 57.458 43.478 0.00 0.00 32.38 4.30
3015 3305 7.282332 ACTAATGGGTCGTTACTAATACCTC 57.718 40.000 0.00 0.00 32.38 3.85
3016 3306 6.266330 GGACTAATGGGTCGTTACTAATACCT 59.734 42.308 0.00 0.00 37.12 3.08
3017 3307 6.450545 GGACTAATGGGTCGTTACTAATACC 58.549 44.000 0.00 0.00 37.12 2.73
3018 3308 6.450545 GGGACTAATGGGTCGTTACTAATAC 58.549 44.000 0.00 0.00 37.12 1.89
3019 3309 5.241506 CGGGACTAATGGGTCGTTACTAATA 59.758 44.000 0.00 0.00 37.12 0.98
3020 3310 4.038402 CGGGACTAATGGGTCGTTACTAAT 59.962 45.833 0.00 0.00 37.12 1.73
3021 3311 3.381272 CGGGACTAATGGGTCGTTACTAA 59.619 47.826 0.00 0.00 37.12 2.24
3022 3312 2.951642 CGGGACTAATGGGTCGTTACTA 59.048 50.000 0.00 0.00 37.12 1.82
3023 3313 1.753073 CGGGACTAATGGGTCGTTACT 59.247 52.381 0.00 0.00 37.12 2.24
3024 3314 1.202452 CCGGGACTAATGGGTCGTTAC 60.202 57.143 0.00 0.00 37.12 2.50
3025 3315 1.113788 CCGGGACTAATGGGTCGTTA 58.886 55.000 0.00 0.00 37.12 3.18
3026 3316 0.906282 ACCGGGACTAATGGGTCGTT 60.906 55.000 6.32 0.00 37.12 3.85
3027 3317 0.906282 AACCGGGACTAATGGGTCGT 60.906 55.000 6.32 0.00 37.12 4.34
3028 3318 0.179092 GAACCGGGACTAATGGGTCG 60.179 60.000 6.32 0.00 37.12 4.79
3029 3319 0.906775 TGAACCGGGACTAATGGGTC 59.093 55.000 6.32 0.00 40.01 4.46
3030 3320 1.211949 CATGAACCGGGACTAATGGGT 59.788 52.381 6.32 0.00 0.00 4.51
3031 3321 1.488812 TCATGAACCGGGACTAATGGG 59.511 52.381 6.32 0.00 0.00 4.00
3032 3322 2.943033 GTTCATGAACCGGGACTAATGG 59.057 50.000 25.26 0.00 35.36 3.16
3044 3334 3.007635 CCTTTAGTCCCGGTTCATGAAC 58.992 50.000 27.16 27.16 40.45 3.18
3045 3335 2.617021 GCCTTTAGTCCCGGTTCATGAA 60.617 50.000 3.38 3.38 0.00 2.57
3046 3336 1.065709 GCCTTTAGTCCCGGTTCATGA 60.066 52.381 0.00 0.00 0.00 3.07
3047 3337 1.379527 GCCTTTAGTCCCGGTTCATG 58.620 55.000 0.00 0.00 0.00 3.07
3048 3338 0.255033 GGCCTTTAGTCCCGGTTCAT 59.745 55.000 0.00 0.00 0.00 2.57
3049 3339 1.681076 GGCCTTTAGTCCCGGTTCA 59.319 57.895 0.00 0.00 0.00 3.18
3050 3340 1.077930 GGGCCTTTAGTCCCGGTTC 60.078 63.158 0.84 0.00 32.00 3.62
3051 3341 3.084304 GGGCCTTTAGTCCCGGTT 58.916 61.111 0.84 0.00 32.00 4.44
3055 3345 1.221021 CGTGAGGGCCTTTAGTCCC 59.779 63.158 7.89 0.00 42.94 4.46
3056 3346 0.611714 TTCGTGAGGGCCTTTAGTCC 59.388 55.000 7.89 0.00 0.00 3.85
3057 3347 1.675116 GGTTCGTGAGGGCCTTTAGTC 60.675 57.143 7.89 0.00 0.00 2.59
3058 3348 0.323957 GGTTCGTGAGGGCCTTTAGT 59.676 55.000 7.89 0.00 0.00 2.24
3059 3349 0.739813 CGGTTCGTGAGGGCCTTTAG 60.740 60.000 7.89 1.63 0.00 1.85
3060 3350 1.294138 CGGTTCGTGAGGGCCTTTA 59.706 57.895 7.89 0.00 0.00 1.85
3061 3351 2.032071 CGGTTCGTGAGGGCCTTT 59.968 61.111 7.89 0.00 0.00 3.11
3062 3352 4.016706 CCGGTTCGTGAGGGCCTT 62.017 66.667 7.89 0.00 0.00 4.35
3065 3355 4.754667 GTCCCGGTTCGTGAGGGC 62.755 72.222 0.00 0.00 44.70 5.19
3066 3356 1.041447 ATAGTCCCGGTTCGTGAGGG 61.041 60.000 0.00 0.00 46.40 4.30
3067 3357 0.822164 AATAGTCCCGGTTCGTGAGG 59.178 55.000 0.00 0.00 0.00 3.86
3068 3358 3.067742 ACATAATAGTCCCGGTTCGTGAG 59.932 47.826 0.00 0.00 0.00 3.51
3069 3359 3.025978 ACATAATAGTCCCGGTTCGTGA 58.974 45.455 0.00 0.00 0.00 4.35
3070 3360 3.120792 CACATAATAGTCCCGGTTCGTG 58.879 50.000 0.00 0.00 0.00 4.35
3071 3361 2.762327 ACACATAATAGTCCCGGTTCGT 59.238 45.455 0.00 0.00 0.00 3.85
3072 3362 3.447918 ACACATAATAGTCCCGGTTCG 57.552 47.619 0.00 0.00 0.00 3.95
3073 3363 6.505044 AAAAACACATAATAGTCCCGGTTC 57.495 37.500 0.00 0.00 0.00 3.62
3102 3392 9.109393 ACACGAATTATTATGTTAGCAATCACT 57.891 29.630 0.00 0.00 0.00 3.41
3125 3415 5.389516 CGGATTAAGCCGCTGATAATTACAC 60.390 44.000 20.48 0.00 45.38 2.90
3236 3526 8.028652 ACTTGGATCTTTTGGGAAAAACATTA 57.971 30.769 0.00 0.00 0.00 1.90
3384 3674 8.254508 AGAGTAATCATCTTCTTCTGGTTGTAC 58.745 37.037 0.00 0.00 0.00 2.90
3386 3676 7.251321 AGAGTAATCATCTTCTTCTGGTTGT 57.749 36.000 0.00 0.00 0.00 3.32
3456 3770 6.106673 TGAAGTAATCCCTTTCAACGATCTC 58.893 40.000 0.00 0.00 0.00 2.75
3466 3780 6.546428 TCTCGATTCTGAAGTAATCCCTTT 57.454 37.500 0.00 0.00 30.98 3.11
3499 3813 5.602145 CCTTTCCAGACTATTCCTCTCTGAT 59.398 44.000 0.00 0.00 34.46 2.90
3675 3989 1.593196 TTCGGCAGGCTATTGCATAC 58.407 50.000 0.66 0.00 45.86 2.39
3719 4033 1.053835 TTGGATGATGCTCCCGGCTA 61.054 55.000 0.00 0.00 42.39 3.93
4092 4439 2.429971 TGCTTGTGACATTTTCAAGGCA 59.570 40.909 5.87 0.00 38.93 4.75
4221 4574 1.614317 GCACATGCCCTCAAGTACCTT 60.614 52.381 0.00 0.00 34.31 3.50
4360 4713 1.003718 GGTCCCGGTTGACTCCAAG 60.004 63.158 10.22 0.00 35.54 3.61
4441 4794 3.119319 TCCATATTGCCTGGTAAGGTGA 58.881 45.455 3.10 0.00 46.43 4.02
4498 4851 6.601613 AGGAAGCAAACGAATATTCCAACATA 59.398 34.615 9.87 0.00 41.56 2.29
4511 4864 1.810151 GGCAATGTAGGAAGCAAACGA 59.190 47.619 0.00 0.00 0.00 3.85
4574 4927 6.018262 CGTCTGTTCCACAAGACTTTATGAAA 60.018 38.462 0.00 0.00 29.88 2.69
4597 4950 0.322098 TCGACAATTTGGATGCCCGT 60.322 50.000 0.78 0.00 34.29 5.28
4620 4973 2.293122 CCTTTTGATGAACGTGCTCCAA 59.707 45.455 0.00 0.00 0.00 3.53
4636 4989 5.590530 TGCCATGCGTATAATTTCCTTTT 57.409 34.783 0.00 0.00 0.00 2.27
4742 5097 5.651530 TGAAGAGACGTAATTAAGCAGAGG 58.348 41.667 0.00 0.00 0.00 3.69
4744 5099 6.127451 TGGATGAAGAGACGTAATTAAGCAGA 60.127 38.462 0.00 0.00 0.00 4.26
4745 5100 6.042777 TGGATGAAGAGACGTAATTAAGCAG 58.957 40.000 0.00 0.00 0.00 4.24
4746 5101 5.972935 TGGATGAAGAGACGTAATTAAGCA 58.027 37.500 0.00 0.00 0.00 3.91
4747 5102 7.484035 AATGGATGAAGAGACGTAATTAAGC 57.516 36.000 0.00 0.00 0.00 3.09
4748 5103 7.852945 GCAAATGGATGAAGAGACGTAATTAAG 59.147 37.037 0.00 0.00 0.00 1.85
4749 5104 7.552687 AGCAAATGGATGAAGAGACGTAATTAA 59.447 33.333 0.00 0.00 0.00 1.40
4750 5105 7.047891 AGCAAATGGATGAAGAGACGTAATTA 58.952 34.615 0.00 0.00 0.00 1.40
4751 5106 5.882557 AGCAAATGGATGAAGAGACGTAATT 59.117 36.000 0.00 0.00 0.00 1.40
4752 5107 5.431765 AGCAAATGGATGAAGAGACGTAAT 58.568 37.500 0.00 0.00 0.00 1.89
4756 5111 4.437239 AGTAGCAAATGGATGAAGAGACG 58.563 43.478 0.00 0.00 0.00 4.18
4759 5114 6.541278 TCAATGAGTAGCAAATGGATGAAGAG 59.459 38.462 0.00 0.00 0.00 2.85
4860 5215 3.795488 GCAGCGGGCTATATTTTTGAACC 60.795 47.826 0.00 0.00 40.25 3.62
4864 5219 3.648339 ATGCAGCGGGCTATATTTTTG 57.352 42.857 5.05 0.00 45.15 2.44
4870 5229 0.599991 CACGAATGCAGCGGGCTATA 60.600 55.000 15.00 0.00 45.15 1.31
4893 5258 3.039011 ACCAGATAGTAGCACGGGAATT 58.961 45.455 0.00 0.00 0.00 2.17
4923 5288 5.003160 TCACACCTTACCAAATCATGAGTG 58.997 41.667 0.09 3.03 0.00 3.51
4970 5335 4.351874 TTTGCTGCTACTAGGTTCAAGT 57.648 40.909 0.00 0.00 0.00 3.16
5032 5397 9.696572 TGAAACTGAATAGTACTAGTACTCCAT 57.303 33.333 33.47 21.84 44.58 3.41
5033 5398 9.524496 TTGAAACTGAATAGTACTAGTACTCCA 57.476 33.333 33.47 26.29 44.58 3.86
5051 5416 8.737168 TTCATATACCCAAGATCTTGAAACTG 57.263 34.615 32.49 20.82 42.93 3.16
5057 5422 5.936956 GGAGCTTCATATACCCAAGATCTTG 59.063 44.000 25.75 25.75 40.13 3.02
5068 5433 7.041508 CCTCAACAGAATTGGAGCTTCATATAC 60.042 40.741 0.00 0.00 0.00 1.47
5075 5440 3.073650 ACTCCTCAACAGAATTGGAGCTT 59.926 43.478 7.19 0.00 45.86 3.74
5099 5464 3.540314 AGCAGAGATCCATCAAGACAC 57.460 47.619 0.00 0.00 0.00 3.67
5101 5466 5.609423 ACATAAGCAGAGATCCATCAAGAC 58.391 41.667 0.00 0.00 0.00 3.01
5106 5471 5.533482 ACGTTACATAAGCAGAGATCCATC 58.467 41.667 0.00 0.00 0.00 3.51
5109 5474 5.810587 TGAAACGTTACATAAGCAGAGATCC 59.189 40.000 0.00 0.00 0.00 3.36
5110 5475 6.508721 GCTGAAACGTTACATAAGCAGAGATC 60.509 42.308 0.00 0.00 0.00 2.75
5111 5476 5.292101 GCTGAAACGTTACATAAGCAGAGAT 59.708 40.000 0.00 0.00 0.00 2.75
5236 5602 8.011844 AGGAAAAAGAAATAGCAAAGTCACTT 57.988 30.769 0.00 0.00 0.00 3.16
5348 5714 7.465379 GCATATATTGTTAGAACGTGCAACTGA 60.465 37.037 0.00 0.00 31.75 3.41
5351 5717 6.628856 CAGCATATATTGTTAGAACGTGCAAC 59.371 38.462 0.00 0.00 32.82 4.17
5377 5743 3.638160 TCAGTTGCAAAATTCCTTGAGCT 59.362 39.130 0.00 0.00 0.00 4.09
5396 5762 4.074259 TCCAAATGTGTTCACTGGATCAG 58.926 43.478 7.88 0.00 35.37 2.90
5403 5769 5.869579 ACTACATCTCCAAATGTGTTCACT 58.130 37.500 4.59 0.00 40.08 3.41
5417 5783 3.579151 GGATGAAGGGGGTACTACATCTC 59.421 52.174 0.00 0.00 35.80 2.75
5419 5785 3.588569 AGGATGAAGGGGGTACTACATC 58.411 50.000 0.00 0.00 35.07 3.06
5429 5795 6.663734 AGACACTTATTTTAGGATGAAGGGG 58.336 40.000 0.00 0.00 0.00 4.79
5506 5887 5.652452 ACCCCAAAATAAGTGTATCAGCTTC 59.348 40.000 0.00 0.00 0.00 3.86
5510 5891 5.505780 TCCACCCCAAAATAAGTGTATCAG 58.494 41.667 0.00 0.00 0.00 2.90
5519 5900 5.742562 ATACTCCATCCACCCCAAAATAA 57.257 39.130 0.00 0.00 0.00 1.40
5529 5910 6.058183 AGCTGTCAAATTATACTCCATCCAC 58.942 40.000 0.00 0.00 0.00 4.02
5534 5915 6.609212 AGAGAGAGCTGTCAAATTATACTCCA 59.391 38.462 14.08 0.00 0.00 3.86
5536 5917 7.145323 GGAGAGAGAGCTGTCAAATTATACTC 58.855 42.308 14.08 7.84 36.20 2.59
5562 5943 1.156736 GCACACAAGAACATACGCCT 58.843 50.000 0.00 0.00 0.00 5.52
5563 5944 0.871722 TGCACACAAGAACATACGCC 59.128 50.000 0.00 0.00 0.00 5.68
5605 5986 4.226846 ACTGAAGAATGTCACCATCCATCT 59.773 41.667 0.00 0.00 0.00 2.90
5611 5992 6.005823 TCAAATCACTGAAGAATGTCACCAT 58.994 36.000 0.00 0.00 0.00 3.55
5623 6004 3.071457 TGAGGAGCTGTCAAATCACTGAA 59.929 43.478 0.00 0.00 0.00 3.02
5625 6006 3.049708 TGAGGAGCTGTCAAATCACTG 57.950 47.619 0.00 0.00 0.00 3.66
5628 6009 3.370209 CCTGATGAGGAGCTGTCAAATCA 60.370 47.826 0.00 0.00 42.93 2.57
5632 6013 0.251354 GCCTGATGAGGAGCTGTCAA 59.749 55.000 0.77 0.00 42.93 3.18
5642 6023 7.043961 TGTAGTACTTCATAAGCCTGATGAG 57.956 40.000 0.00 0.00 34.85 2.90
5643 6024 6.461648 GCTGTAGTACTTCATAAGCCTGATGA 60.462 42.308 0.00 0.00 0.00 2.92
5645 6026 5.363868 TGCTGTAGTACTTCATAAGCCTGAT 59.636 40.000 0.00 0.00 0.00 2.90
5646 6027 4.709886 TGCTGTAGTACTTCATAAGCCTGA 59.290 41.667 0.00 0.00 0.00 3.86
5647 6028 4.806247 GTGCTGTAGTACTTCATAAGCCTG 59.194 45.833 0.00 0.00 0.00 4.85
5648 6029 4.466370 TGTGCTGTAGTACTTCATAAGCCT 59.534 41.667 0.00 0.00 0.00 4.58
5650 6031 7.203910 AGTATGTGCTGTAGTACTTCATAAGC 58.796 38.462 0.00 2.93 0.00 3.09
5651 6032 8.625651 AGAGTATGTGCTGTAGTACTTCATAAG 58.374 37.037 0.00 0.00 0.00 1.73
5652 6033 8.521170 AGAGTATGTGCTGTAGTACTTCATAA 57.479 34.615 0.00 0.00 0.00 1.90
5654 6035 7.122799 TGAAGAGTATGTGCTGTAGTACTTCAT 59.877 37.037 0.00 4.17 36.31 2.57
5656 6037 6.853720 TGAAGAGTATGTGCTGTAGTACTTC 58.146 40.000 0.00 0.00 0.00 3.01
5657 6038 6.659668 TCTGAAGAGTATGTGCTGTAGTACTT 59.340 38.462 0.00 0.00 0.00 2.24
5659 6040 6.438259 TCTGAAGAGTATGTGCTGTAGTAC 57.562 41.667 0.00 0.00 0.00 2.73
5660 6041 7.484140 CAATCTGAAGAGTATGTGCTGTAGTA 58.516 38.462 0.00 0.00 0.00 1.82
5661 6042 6.336566 CAATCTGAAGAGTATGTGCTGTAGT 58.663 40.000 0.00 0.00 0.00 2.73
5662 6043 5.233902 GCAATCTGAAGAGTATGTGCTGTAG 59.766 44.000 0.00 0.00 0.00 2.74
5663 6044 5.111989 GCAATCTGAAGAGTATGTGCTGTA 58.888 41.667 0.00 0.00 0.00 2.74
5664 6045 3.937706 GCAATCTGAAGAGTATGTGCTGT 59.062 43.478 0.00 0.00 0.00 4.40
5665 6046 3.937079 TGCAATCTGAAGAGTATGTGCTG 59.063 43.478 0.00 0.00 0.00 4.41
5666 6047 4.190001 CTGCAATCTGAAGAGTATGTGCT 58.810 43.478 0.00 0.00 0.00 4.40
5667 6048 3.937706 ACTGCAATCTGAAGAGTATGTGC 59.062 43.478 0.00 0.00 0.00 4.57
5668 6049 6.035435 GTGTACTGCAATCTGAAGAGTATGTG 59.965 42.308 0.00 0.00 0.00 3.21
5669 6050 6.102663 GTGTACTGCAATCTGAAGAGTATGT 58.897 40.000 0.00 0.00 0.00 2.29
5670 6051 6.035435 GTGTGTACTGCAATCTGAAGAGTATG 59.965 42.308 0.00 0.00 0.00 2.39
5671 6052 6.102663 GTGTGTACTGCAATCTGAAGAGTAT 58.897 40.000 0.00 0.00 0.00 2.12
5673 6054 4.202253 TGTGTGTACTGCAATCTGAAGAGT 60.202 41.667 0.00 0.00 0.00 3.24
5674 6055 4.309933 TGTGTGTACTGCAATCTGAAGAG 58.690 43.478 0.00 0.00 0.00 2.85
5675 6056 4.335400 TGTGTGTACTGCAATCTGAAGA 57.665 40.909 0.00 0.00 0.00 2.87
5676 6057 5.207768 GTTTGTGTGTACTGCAATCTGAAG 58.792 41.667 0.00 0.00 0.00 3.02
5677 6058 4.637977 TGTTTGTGTGTACTGCAATCTGAA 59.362 37.500 0.00 0.00 0.00 3.02
5678 6059 4.035091 GTGTTTGTGTGTACTGCAATCTGA 59.965 41.667 0.00 0.00 0.00 3.27
5679 6060 4.201901 TGTGTTTGTGTGTACTGCAATCTG 60.202 41.667 0.00 0.00 0.00 2.90
5681 6062 4.285807 TGTGTTTGTGTGTACTGCAATC 57.714 40.909 0.00 0.00 0.00 2.67
5682 6063 4.916983 ATGTGTTTGTGTGTACTGCAAT 57.083 36.364 0.00 0.00 0.00 3.56
5683 6064 5.819825 TTATGTGTTTGTGTGTACTGCAA 57.180 34.783 0.00 0.00 0.00 4.08
5685 6066 5.079406 CGATTATGTGTTTGTGTGTACTGC 58.921 41.667 0.00 0.00 0.00 4.40
5686 6067 6.145534 AGACGATTATGTGTTTGTGTGTACTG 59.854 38.462 0.00 0.00 0.00 2.74
5688 6069 6.462073 AGACGATTATGTGTTTGTGTGTAC 57.538 37.500 0.00 0.00 0.00 2.90
5696 6086 6.655003 AGATTGGTGAAGACGATTATGTGTTT 59.345 34.615 0.00 0.00 0.00 2.83
5698 6088 5.734720 AGATTGGTGAAGACGATTATGTGT 58.265 37.500 0.00 0.00 0.00 3.72
5716 6106 2.005451 CTGGCTCGGAAGTGAAGATTG 58.995 52.381 0.00 0.00 0.00 2.67
5722 6112 1.881903 CTCTGCTGGCTCGGAAGTGA 61.882 60.000 0.00 0.00 0.00 3.41
5772 6162 1.456331 AGCCTGCAAGTTGCCAAGT 60.456 52.632 24.59 4.79 44.23 3.16
5773 6163 1.006571 CAGCCTGCAAGTTGCCAAG 60.007 57.895 24.59 15.77 44.23 3.61
5774 6164 1.757731 ACAGCCTGCAAGTTGCCAA 60.758 52.632 24.59 6.55 44.23 4.52
5775 6165 2.123769 ACAGCCTGCAAGTTGCCA 60.124 55.556 24.59 11.89 44.23 4.92
5776 6166 2.337532 CACAGCCTGCAAGTTGCC 59.662 61.111 24.59 9.80 44.23 4.52
5777 6167 2.355481 GCACAGCCTGCAAGTTGC 60.355 61.111 21.17 21.17 46.29 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.