Multiple sequence alignment - TraesCS1B01G002300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G002300 chr1B 100.000 5703 0 0 1 5703 1733758 1728056 0.000000e+00 10532.0
1 TraesCS1B01G002300 chr1B 89.214 2457 219 24 2488 4932 1846605 1844183 0.000000e+00 3027.0
2 TraesCS1B01G002300 chr1B 89.084 2455 218 25 2487 4932 1781227 1783640 0.000000e+00 3003.0
3 TraesCS1B01G002300 chr1B 89.224 2422 224 24 2488 4896 724082 721685 0.000000e+00 2992.0
4 TraesCS1B01G002300 chr1B 79.501 2283 386 54 2448 4698 2755089 2752857 0.000000e+00 1548.0
5 TraesCS1B01G002300 chr1B 77.168 2352 444 62 2444 4752 2006329 2004028 0.000000e+00 1282.0
6 TraesCS1B01G002300 chr1B 77.399 2230 405 61 2487 4686 171004 168844 0.000000e+00 1234.0
7 TraesCS1B01G002300 chr1B 78.923 1485 261 31 3212 4678 2303486 2302036 0.000000e+00 961.0
8 TraesCS1B01G002300 chr1B 91.523 637 34 9 832 1451 725748 725115 0.000000e+00 859.0
9 TraesCS1B01G002300 chr1B 84.439 437 59 5 1049 1479 1848354 1847921 6.830000e-114 422.0
10 TraesCS1B01G002300 chr1B 87.222 360 40 4 2094 2452 1846965 1846611 6.880000e-109 405.0
11 TraesCS1B01G002300 chr1B 94.000 250 14 1 3 251 726457 726208 1.500000e-100 377.0
12 TraesCS1B01G002300 chr1B 79.956 454 78 9 999 1441 1779161 1779612 7.130000e-84 322.0
13 TraesCS1B01G002300 chr1B 83.041 342 46 7 1497 1833 3165064 3165398 3.340000e-77 300.0
14 TraesCS1B01G002300 chr1B 80.890 382 48 17 1514 1888 724884 724521 1.560000e-70 278.0
15 TraesCS1B01G002300 chr1B 92.308 169 5 3 679 840 725963 725796 3.440000e-57 233.0
16 TraesCS1B01G002300 chr1B 84.348 230 21 8 1497 1723 1847705 1847488 1.610000e-50 211.0
17 TraesCS1B01G002300 chr1B 97.297 111 3 0 550 660 726209 726099 7.540000e-44 189.0
18 TraesCS1B01G002300 chr1A 79.445 2486 432 44 2444 4915 3617122 3614702 0.000000e+00 1687.0
19 TraesCS1B01G002300 chr1A 82.134 403 47 12 3697 4085 2182965 2183356 7.130000e-84 322.0
20 TraesCS1B01G002300 chr3B 80.391 2249 387 33 2455 4685 801315033 801317245 0.000000e+00 1661.0
21 TraesCS1B01G002300 chr3B 98.708 619 7 1 5085 5703 729697175 729697792 0.000000e+00 1098.0
22 TraesCS1B01G002300 chr3B 97.886 615 13 0 5089 5703 555149528 555150142 0.000000e+00 1064.0
23 TraesCS1B01G002300 chr3B 76.324 1605 314 42 3194 4757 815478491 815480070 0.000000e+00 798.0
24 TraesCS1B01G002300 chr3B 80.000 275 55 0 1043 1317 801313559 801313833 2.690000e-48 204.0
25 TraesCS1B01G002300 chr3B 80.545 257 19 18 4680 4932 738284494 738284723 9.830000e-38 169.0
26 TraesCS1B01G002300 chr3B 76.733 202 34 8 1117 1317 802604353 802604542 3.640000e-17 100.0
27 TraesCS1B01G002300 chr3B 79.355 155 13 11 329 469 428109793 428109942 2.190000e-14 91.6
28 TraesCS1B01G002300 chr3B 78.571 140 19 8 329 463 506195986 506196119 1.320000e-11 82.4
29 TraesCS1B01G002300 chr1D 81.459 1947 290 45 2148 4078 2498367 2496476 0.000000e+00 1530.0
30 TraesCS1B01G002300 chr1D 78.168 513 103 9 4179 4685 2496461 2495952 9.220000e-83 318.0
31 TraesCS1B01G002300 chr1D 82.292 288 47 4 1038 1323 2499415 2499130 4.410000e-61 246.0
32 TraesCS1B01G002300 chr3A 83.296 1323 203 15 2444 3757 52198660 52197347 0.000000e+00 1203.0
33 TraesCS1B01G002300 chr3A 99.347 613 4 0 5091 5703 177871108 177871720 0.000000e+00 1110.0
34 TraesCS1B01G002300 chr3A 84.205 1013 155 4 2988 3999 692412554 692413562 0.000000e+00 979.0
35 TraesCS1B01G002300 chr3A 84.468 940 116 18 3950 4878 692468350 692469270 0.000000e+00 900.0
36 TraesCS1B01G002300 chr3A 87.031 640 76 5 3677 4314 692054188 692054822 0.000000e+00 715.0
37 TraesCS1B01G002300 chr3A 88.972 535 56 1 3219 3753 692467814 692468345 0.000000e+00 658.0
38 TraesCS1B01G002300 chr3A 76.109 1172 231 40 3783 4931 52196912 52195767 8.290000e-158 568.0
39 TraesCS1B01G002300 chr3A 84.291 522 68 9 4238 4755 692413562 692414073 1.100000e-136 497.0
40 TraesCS1B01G002300 chr3D 82.980 1322 210 11 2562 3879 555238960 555240270 0.000000e+00 1181.0
41 TraesCS1B01G002300 chr3D 77.818 275 61 0 1043 1317 596664853 596664579 2.730000e-38 171.0
42 TraesCS1B01G002300 chr5A 99.677 619 2 0 5085 5703 42130627 42131245 0.000000e+00 1133.0
43 TraesCS1B01G002300 chr5A 85.235 447 38 9 5285 5703 623378011 623378457 8.780000e-118 435.0
44 TraesCS1B01G002300 chr2A 98.708 619 7 1 5086 5703 55892865 55892247 0.000000e+00 1098.0
45 TraesCS1B01G002300 chr2A 77.376 442 92 8 4241 4676 778025004 778025443 7.330000e-64 255.0
46 TraesCS1B01G002300 chr2A 79.605 152 14 10 329 469 690522322 690522467 6.080000e-15 93.5
47 TraesCS1B01G002300 chr2B 97.731 617 13 1 5087 5703 52634802 52634187 0.000000e+00 1061.0
48 TraesCS1B01G002300 chr2B 79.333 150 21 8 325 469 150986387 150986243 4.700000e-16 97.1
49 TraesCS1B01G002300 chr5B 97.390 613 13 1 5091 5703 461884737 461884128 0.000000e+00 1040.0
50 TraesCS1B01G002300 chr4B 83.216 566 61 15 5089 5630 583136790 583136235 6.640000e-134 488.0
51 TraesCS1B01G002300 chr2D 85.249 461 58 6 5087 5545 324386825 324387277 3.110000e-127 466.0
52 TraesCS1B01G002300 chr6D 77.001 687 129 27 4081 4753 3163031 3163702 3.250000e-97 366.0
53 TraesCS1B01G002300 chr7A 82.963 135 13 3 340 470 422830838 422830966 4.670000e-21 113.0
54 TraesCS1B01G002300 chr6A 80.952 147 20 2 327 469 243958288 243958430 6.040000e-20 110.0
55 TraesCS1B01G002300 chr5D 85.870 92 13 0 329 420 277243003 277243094 1.310000e-16 99.0
56 TraesCS1B01G002300 chr4A 77.852 149 14 14 334 467 117255764 117255620 2.200000e-09 75.0
57 TraesCS1B01G002300 chrUn 77.612 134 17 9 325 449 22163649 22163778 1.030000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G002300 chr1B 1728056 1733758 5702 True 10532.000000 10532 100.000000 1 5703 1 chr1B.!!$R2 5702
1 TraesCS1B01G002300 chr1B 1779161 1783640 4479 False 1662.500000 3003 84.520000 999 4932 2 chr1B.!!$F2 3933
2 TraesCS1B01G002300 chr1B 2752857 2755089 2232 True 1548.000000 1548 79.501000 2448 4698 1 chr1B.!!$R5 2250
3 TraesCS1B01G002300 chr1B 2004028 2006329 2301 True 1282.000000 1282 77.168000 2444 4752 1 chr1B.!!$R3 2308
4 TraesCS1B01G002300 chr1B 168844 171004 2160 True 1234.000000 1234 77.399000 2487 4686 1 chr1B.!!$R1 2199
5 TraesCS1B01G002300 chr1B 1844183 1848354 4171 True 1016.250000 3027 86.305750 1049 4932 4 chr1B.!!$R7 3883
6 TraesCS1B01G002300 chr1B 2302036 2303486 1450 True 961.000000 961 78.923000 3212 4678 1 chr1B.!!$R4 1466
7 TraesCS1B01G002300 chr1B 721685 726457 4772 True 821.333333 2992 90.873667 3 4896 6 chr1B.!!$R6 4893
8 TraesCS1B01G002300 chr1A 3614702 3617122 2420 True 1687.000000 1687 79.445000 2444 4915 1 chr1A.!!$R1 2471
9 TraesCS1B01G002300 chr3B 729697175 729697792 617 False 1098.000000 1098 98.708000 5085 5703 1 chr3B.!!$F4 618
10 TraesCS1B01G002300 chr3B 555149528 555150142 614 False 1064.000000 1064 97.886000 5089 5703 1 chr3B.!!$F3 614
11 TraesCS1B01G002300 chr3B 801313559 801317245 3686 False 932.500000 1661 80.195500 1043 4685 2 chr3B.!!$F8 3642
12 TraesCS1B01G002300 chr3B 815478491 815480070 1579 False 798.000000 798 76.324000 3194 4757 1 chr3B.!!$F7 1563
13 TraesCS1B01G002300 chr1D 2495952 2499415 3463 True 698.000000 1530 80.639667 1038 4685 3 chr1D.!!$R1 3647
14 TraesCS1B01G002300 chr3A 177871108 177871720 612 False 1110.000000 1110 99.347000 5091 5703 1 chr3A.!!$F1 612
15 TraesCS1B01G002300 chr3A 52195767 52198660 2893 True 885.500000 1203 79.702500 2444 4931 2 chr3A.!!$R1 2487
16 TraesCS1B01G002300 chr3A 692467814 692469270 1456 False 779.000000 900 86.720000 3219 4878 2 chr3A.!!$F4 1659
17 TraesCS1B01G002300 chr3A 692412554 692414073 1519 False 738.000000 979 84.248000 2988 4755 2 chr3A.!!$F3 1767
18 TraesCS1B01G002300 chr3A 692054188 692054822 634 False 715.000000 715 87.031000 3677 4314 1 chr3A.!!$F2 637
19 TraesCS1B01G002300 chr3D 555238960 555240270 1310 False 1181.000000 1181 82.980000 2562 3879 1 chr3D.!!$F1 1317
20 TraesCS1B01G002300 chr5A 42130627 42131245 618 False 1133.000000 1133 99.677000 5085 5703 1 chr5A.!!$F1 618
21 TraesCS1B01G002300 chr2A 55892247 55892865 618 True 1098.000000 1098 98.708000 5086 5703 1 chr2A.!!$R1 617
22 TraesCS1B01G002300 chr2B 52634187 52634802 615 True 1061.000000 1061 97.731000 5087 5703 1 chr2B.!!$R1 616
23 TraesCS1B01G002300 chr5B 461884128 461884737 609 True 1040.000000 1040 97.390000 5091 5703 1 chr5B.!!$R1 612
24 TraesCS1B01G002300 chr4B 583136235 583136790 555 True 488.000000 488 83.216000 5089 5630 1 chr4B.!!$R1 541
25 TraesCS1B01G002300 chr6D 3163031 3163702 671 False 366.000000 366 77.001000 4081 4753 1 chr6D.!!$F1 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
482 484 0.034089 GGGAGTGGTAGCCTGCATTT 60.034 55.0 0.00 0.00 0.00 2.32 F
664 666 0.034896 CAACGCCACCACCTAAGACT 59.965 55.0 0.00 0.00 0.00 3.24 F
1430 1715 0.035056 GCTTGGATACTGCAGTGGGT 60.035 55.0 29.57 14.84 36.88 4.51 F
1442 1727 0.107508 CAGTGGGTGCGGAAGATCAT 60.108 55.0 0.00 0.00 0.00 2.45 F
1863 2624 0.165727 TGCGCGTTCAAATAGCACTG 59.834 50.0 8.43 0.00 32.43 3.66 F
2392 4076 0.258774 AACTCTTGGGTGTGGCAAGT 59.741 50.0 0.00 0.00 0.00 3.16 F
4155 6337 0.251073 ATCAAGGGCCTGCAAAATGC 59.749 50.0 6.92 0.00 45.29 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1467 1752 0.034670 GAAGTGCATCCTCTGGCCTT 60.035 55.000 3.32 0.0 0.00 4.35 R
1809 2526 0.411452 ATGTTTGCCCCCACACCATA 59.589 50.000 0.00 0.0 0.00 2.74 R
3367 5063 0.877071 CCATGTCCTCTGTTGCACAC 59.123 55.000 0.00 0.0 0.00 3.82 R
3419 5115 4.278919 TGCTTGAAGAAATGAGCATGACAA 59.721 37.500 0.00 0.0 39.97 3.18 R
3552 5284 1.079490 TCCATCCTTCTCCTCTGTGGT 59.921 52.381 0.00 0.0 37.07 4.16 R
4159 6341 2.540383 TCAAGAGCTTCCTCCTTGCTA 58.460 47.619 7.13 0.0 38.96 3.49 R
5058 7304 0.172803 CAGGCAGTGGTACTACCGAC 59.827 60.000 5.65 0.0 42.58 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.483714 CCTAGCTACATGCCGAACACAT 60.484 50.000 0.00 0.00 44.23 3.21
140 141 0.674534 GGATACGGTGGCTAGGTCAG 59.325 60.000 0.00 0.00 0.00 3.51
148 149 1.064314 GTGGCTAGGTCAGAGGAGAGA 60.064 57.143 0.00 0.00 0.00 3.10
191 193 6.490566 TTTTTAAGCGTGGATAACTCTTCC 57.509 37.500 0.00 0.00 35.47 3.46
196 198 3.008049 AGCGTGGATAACTCTTCCTGTTT 59.992 43.478 0.00 0.00 34.17 2.83
207 209 4.043435 ACTCTTCCTGTTTGCTCCCTAAAT 59.957 41.667 0.00 0.00 0.00 1.40
208 210 4.998051 TCTTCCTGTTTGCTCCCTAAATT 58.002 39.130 0.00 0.00 0.00 1.82
236 238 9.191995 GTTTTGTTACCAATCCAATCTACAAAG 57.808 33.333 0.00 0.00 36.15 2.77
243 245 7.886338 ACCAATCCAATCTACAAAGAAGAAAC 58.114 34.615 0.00 0.00 34.73 2.78
249 251 9.219603 TCCAATCTACAAAGAAGAAACACTATG 57.780 33.333 0.00 0.00 34.73 2.23
250 252 7.965107 CCAATCTACAAAGAAGAAACACTATGC 59.035 37.037 0.00 0.00 34.73 3.14
251 253 8.506437 CAATCTACAAAGAAGAAACACTATGCA 58.494 33.333 0.00 0.00 34.73 3.96
252 254 7.421530 TCTACAAAGAAGAAACACTATGCAC 57.578 36.000 0.00 0.00 0.00 4.57
253 255 5.438761 ACAAAGAAGAAACACTATGCACC 57.561 39.130 0.00 0.00 0.00 5.01
254 256 4.887071 ACAAAGAAGAAACACTATGCACCA 59.113 37.500 0.00 0.00 0.00 4.17
255 257 5.009010 ACAAAGAAGAAACACTATGCACCAG 59.991 40.000 0.00 0.00 0.00 4.00
256 258 4.357918 AGAAGAAACACTATGCACCAGT 57.642 40.909 0.00 0.00 0.00 4.00
257 259 4.718961 AGAAGAAACACTATGCACCAGTT 58.281 39.130 0.03 0.00 0.00 3.16
258 260 5.133221 AGAAGAAACACTATGCACCAGTTT 58.867 37.500 7.77 7.77 35.33 2.66
259 261 6.296026 AGAAGAAACACTATGCACCAGTTTA 58.704 36.000 7.96 0.00 33.04 2.01
260 262 6.770785 AGAAGAAACACTATGCACCAGTTTAA 59.229 34.615 7.96 0.00 33.04 1.52
261 263 7.448469 AGAAGAAACACTATGCACCAGTTTAAT 59.552 33.333 7.96 2.24 33.04 1.40
262 264 7.524717 AGAAACACTATGCACCAGTTTAATT 57.475 32.000 7.96 0.00 33.04 1.40
263 265 8.630054 AGAAACACTATGCACCAGTTTAATTA 57.370 30.769 7.96 0.00 33.04 1.40
264 266 9.243105 AGAAACACTATGCACCAGTTTAATTAT 57.757 29.630 7.96 0.00 33.04 1.28
265 267 9.289303 GAAACACTATGCACCAGTTTAATTATG 57.711 33.333 7.96 0.00 33.04 1.90
266 268 7.938140 ACACTATGCACCAGTTTAATTATGT 57.062 32.000 0.03 0.00 0.00 2.29
267 269 7.985476 ACACTATGCACCAGTTTAATTATGTC 58.015 34.615 0.03 0.00 0.00 3.06
268 270 7.609918 ACACTATGCACCAGTTTAATTATGTCA 59.390 33.333 0.03 0.00 0.00 3.58
269 271 8.623903 CACTATGCACCAGTTTAATTATGTCAT 58.376 33.333 0.03 0.00 0.00 3.06
270 272 9.189156 ACTATGCACCAGTTTAATTATGTCATT 57.811 29.630 0.00 0.00 0.00 2.57
271 273 9.669353 CTATGCACCAGTTTAATTATGTCATTC 57.331 33.333 0.00 0.00 0.00 2.67
272 274 6.550843 TGCACCAGTTTAATTATGTCATTCG 58.449 36.000 0.00 0.00 0.00 3.34
273 275 5.971202 GCACCAGTTTAATTATGTCATTCGG 59.029 40.000 0.00 0.00 0.00 4.30
274 276 6.183360 GCACCAGTTTAATTATGTCATTCGGA 60.183 38.462 0.00 0.00 0.00 4.55
275 277 7.627513 GCACCAGTTTAATTATGTCATTCGGAA 60.628 37.037 0.00 0.00 0.00 4.30
276 278 8.240682 CACCAGTTTAATTATGTCATTCGGAAA 58.759 33.333 0.00 0.00 0.00 3.13
277 279 8.966868 ACCAGTTTAATTATGTCATTCGGAAAT 58.033 29.630 0.00 0.00 0.00 2.17
278 280 9.450807 CCAGTTTAATTATGTCATTCGGAAATC 57.549 33.333 0.00 0.00 0.00 2.17
279 281 9.158364 CAGTTTAATTATGTCATTCGGAAATCG 57.842 33.333 0.00 0.00 40.90 3.34
280 282 7.855904 AGTTTAATTATGTCATTCGGAAATCGC 59.144 33.333 0.00 0.00 39.05 4.58
281 283 7.490962 TTAATTATGTCATTCGGAAATCGCT 57.509 32.000 0.00 0.00 39.05 4.93
282 284 4.794248 TTATGTCATTCGGAAATCGCTG 57.206 40.909 0.00 0.00 39.05 5.18
283 285 1.368641 TGTCATTCGGAAATCGCTGG 58.631 50.000 0.00 0.00 39.05 4.85
284 286 1.066502 TGTCATTCGGAAATCGCTGGA 60.067 47.619 0.00 0.00 39.05 3.86
285 287 2.006888 GTCATTCGGAAATCGCTGGAA 58.993 47.619 0.00 0.00 39.05 3.53
286 288 2.418628 GTCATTCGGAAATCGCTGGAAA 59.581 45.455 0.00 0.00 39.05 3.13
287 289 3.065371 GTCATTCGGAAATCGCTGGAAAT 59.935 43.478 0.00 0.00 39.05 2.17
288 290 3.065233 TCATTCGGAAATCGCTGGAAATG 59.935 43.478 0.00 0.00 39.05 2.32
289 291 0.732571 TCGGAAATCGCTGGAAATGC 59.267 50.000 0.00 0.00 39.05 3.56
290 292 0.451383 CGGAAATCGCTGGAAATGCA 59.549 50.000 0.00 0.00 0.00 3.96
291 293 1.066002 CGGAAATCGCTGGAAATGCAT 59.934 47.619 0.00 0.00 0.00 3.96
292 294 2.735823 GGAAATCGCTGGAAATGCATC 58.264 47.619 0.00 0.00 0.00 3.91
293 295 2.360165 GGAAATCGCTGGAAATGCATCT 59.640 45.455 0.00 0.00 0.00 2.90
294 296 3.565482 GGAAATCGCTGGAAATGCATCTA 59.435 43.478 0.00 0.00 0.00 1.98
295 297 4.217118 GGAAATCGCTGGAAATGCATCTAT 59.783 41.667 0.00 0.00 0.00 1.98
296 298 5.368256 AAATCGCTGGAAATGCATCTATC 57.632 39.130 0.00 0.00 0.00 2.08
297 299 3.758755 TCGCTGGAAATGCATCTATCT 57.241 42.857 0.00 0.00 0.00 1.98
298 300 3.657634 TCGCTGGAAATGCATCTATCTC 58.342 45.455 0.00 0.00 0.00 2.75
299 301 2.740981 CGCTGGAAATGCATCTATCTCC 59.259 50.000 0.00 2.34 0.00 3.71
300 302 3.080319 GCTGGAAATGCATCTATCTCCC 58.920 50.000 0.00 0.00 0.00 4.30
301 303 3.244840 GCTGGAAATGCATCTATCTCCCT 60.245 47.826 0.00 0.00 0.00 4.20
302 304 4.749166 GCTGGAAATGCATCTATCTCCCTT 60.749 45.833 0.00 0.00 0.00 3.95
303 305 5.383476 CTGGAAATGCATCTATCTCCCTTT 58.617 41.667 0.00 0.00 0.00 3.11
304 306 5.769835 TGGAAATGCATCTATCTCCCTTTT 58.230 37.500 0.00 0.00 0.00 2.27
305 307 6.197168 TGGAAATGCATCTATCTCCCTTTTT 58.803 36.000 0.00 0.00 0.00 1.94
331 333 8.752766 TTTTGAAATCGATCGAGTAAACTACT 57.247 30.769 23.84 3.49 42.86 2.57
344 346 6.681729 AGTAAACTACTCCCTTCATTCACA 57.318 37.500 0.00 0.00 32.47 3.58
345 347 7.074653 AGTAAACTACTCCCTTCATTCACAA 57.925 36.000 0.00 0.00 32.47 3.33
346 348 7.514721 AGTAAACTACTCCCTTCATTCACAAA 58.485 34.615 0.00 0.00 32.47 2.83
347 349 8.164070 AGTAAACTACTCCCTTCATTCACAAAT 58.836 33.333 0.00 0.00 32.47 2.32
348 350 9.444600 GTAAACTACTCCCTTCATTCACAAATA 57.555 33.333 0.00 0.00 0.00 1.40
352 354 9.838339 ACTACTCCCTTCATTCACAAATATAAG 57.162 33.333 0.00 0.00 0.00 1.73
355 357 9.347240 ACTCCCTTCATTCACAAATATAAGATG 57.653 33.333 0.00 0.00 0.00 2.90
356 358 9.347240 CTCCCTTCATTCACAAATATAAGATGT 57.653 33.333 0.00 0.00 0.00 3.06
357 359 9.699410 TCCCTTCATTCACAAATATAAGATGTT 57.301 29.630 0.00 0.00 0.00 2.71
398 400 9.787532 ATGAACTAAAATGGATGAATAAACACG 57.212 29.630 0.00 0.00 0.00 4.49
399 401 7.753132 TGAACTAAAATGGATGAATAAACACGC 59.247 33.333 0.00 0.00 0.00 5.34
400 402 7.391148 ACTAAAATGGATGAATAAACACGCT 57.609 32.000 0.00 0.00 0.00 5.07
401 403 8.500753 ACTAAAATGGATGAATAAACACGCTA 57.499 30.769 0.00 0.00 0.00 4.26
402 404 8.952278 ACTAAAATGGATGAATAAACACGCTAA 58.048 29.630 0.00 0.00 0.00 3.09
403 405 9.781834 CTAAAATGGATGAATAAACACGCTAAA 57.218 29.630 0.00 0.00 0.00 1.85
405 407 9.651913 AAAATGGATGAATAAACACGCTAAAAT 57.348 25.926 0.00 0.00 0.00 1.82
406 408 8.633075 AATGGATGAATAAACACGCTAAAATG 57.367 30.769 0.00 0.00 0.00 2.32
407 409 6.033341 TGGATGAATAAACACGCTAAAATGC 58.967 36.000 0.00 0.00 0.00 3.56
421 423 5.266242 GCTAAAATGCGCCTATATACATGC 58.734 41.667 4.18 0.00 0.00 4.06
422 424 5.163764 GCTAAAATGCGCCTATATACATGCA 60.164 40.000 4.18 0.00 36.69 3.96
423 425 5.902613 AAAATGCGCCTATATACATGCAT 57.097 34.783 4.18 0.00 44.25 3.96
424 426 4.888038 AATGCGCCTATATACATGCATG 57.112 40.909 25.09 25.09 41.78 4.06
425 427 3.333029 TGCGCCTATATACATGCATGT 57.667 42.857 33.20 33.20 44.48 3.21
426 428 3.002102 TGCGCCTATATACATGCATGTG 58.998 45.455 36.72 22.21 41.89 3.21
427 429 3.261580 GCGCCTATATACATGCATGTGA 58.738 45.455 36.72 25.97 41.89 3.58
428 430 3.684305 GCGCCTATATACATGCATGTGAA 59.316 43.478 36.72 25.71 41.89 3.18
429 431 4.333649 GCGCCTATATACATGCATGTGAAT 59.666 41.667 36.72 29.36 41.89 2.57
430 432 5.503031 GCGCCTATATACATGCATGTGAATC 60.503 44.000 36.72 19.30 41.89 2.52
431 433 5.581874 CGCCTATATACATGCATGTGAATCA 59.418 40.000 36.72 20.52 41.89 2.57
432 434 6.238022 CGCCTATATACATGCATGTGAATCAG 60.238 42.308 36.72 25.25 41.89 2.90
433 435 6.820152 GCCTATATACATGCATGTGAATCAGA 59.180 38.462 36.72 19.10 41.89 3.27
434 436 7.335171 GCCTATATACATGCATGTGAATCAGAA 59.665 37.037 36.72 18.39 41.89 3.02
435 437 9.223099 CCTATATACATGCATGTGAATCAGAAA 57.777 33.333 36.72 17.69 41.89 2.52
460 462 9.458374 AAAAAGTTAGGACATTATTTGTGAACG 57.542 29.630 0.00 0.00 39.18 3.95
461 463 6.737254 AGTTAGGACATTATTTGTGAACGG 57.263 37.500 0.00 0.00 39.18 4.44
462 464 6.469410 AGTTAGGACATTATTTGTGAACGGA 58.531 36.000 0.00 0.00 39.18 4.69
463 465 6.594159 AGTTAGGACATTATTTGTGAACGGAG 59.406 38.462 0.00 0.00 39.18 4.63
464 466 4.261801 AGGACATTATTTGTGAACGGAGG 58.738 43.478 0.00 0.00 39.18 4.30
465 467 3.377172 GGACATTATTTGTGAACGGAGGG 59.623 47.826 0.00 0.00 39.18 4.30
466 468 4.258543 GACATTATTTGTGAACGGAGGGA 58.741 43.478 0.00 0.00 39.18 4.20
467 469 4.261801 ACATTATTTGTGAACGGAGGGAG 58.738 43.478 0.00 0.00 37.11 4.30
468 470 4.261801 CATTATTTGTGAACGGAGGGAGT 58.738 43.478 0.00 0.00 0.00 3.85
469 471 2.185004 ATTTGTGAACGGAGGGAGTG 57.815 50.000 0.00 0.00 0.00 3.51
470 472 0.107831 TTTGTGAACGGAGGGAGTGG 59.892 55.000 0.00 0.00 0.00 4.00
471 473 1.052124 TTGTGAACGGAGGGAGTGGT 61.052 55.000 0.00 0.00 0.00 4.16
472 474 0.178955 TGTGAACGGAGGGAGTGGTA 60.179 55.000 0.00 0.00 0.00 3.25
473 475 0.531200 GTGAACGGAGGGAGTGGTAG 59.469 60.000 0.00 0.00 0.00 3.18
474 476 1.255667 TGAACGGAGGGAGTGGTAGC 61.256 60.000 0.00 0.00 0.00 3.58
475 477 1.957765 GAACGGAGGGAGTGGTAGCC 61.958 65.000 0.00 0.00 0.00 3.93
476 478 2.042843 CGGAGGGAGTGGTAGCCT 60.043 66.667 0.00 0.00 0.00 4.58
477 479 2.427245 CGGAGGGAGTGGTAGCCTG 61.427 68.421 0.00 0.00 0.00 4.85
478 480 2.736826 GGAGGGAGTGGTAGCCTGC 61.737 68.421 0.00 0.00 0.00 4.85
479 481 1.990060 GAGGGAGTGGTAGCCTGCA 60.990 63.158 0.00 0.00 0.00 4.41
480 482 1.307343 AGGGAGTGGTAGCCTGCAT 60.307 57.895 0.00 0.00 0.00 3.96
481 483 0.916358 AGGGAGTGGTAGCCTGCATT 60.916 55.000 0.00 0.00 0.00 3.56
482 484 0.034089 GGGAGTGGTAGCCTGCATTT 60.034 55.000 0.00 0.00 0.00 2.32
483 485 1.211949 GGGAGTGGTAGCCTGCATTTA 59.788 52.381 0.00 0.00 0.00 1.40
484 486 2.158608 GGGAGTGGTAGCCTGCATTTAT 60.159 50.000 0.00 0.00 0.00 1.40
485 487 2.880890 GGAGTGGTAGCCTGCATTTATG 59.119 50.000 0.00 0.00 0.00 1.90
486 488 3.545703 GAGTGGTAGCCTGCATTTATGT 58.454 45.455 0.00 0.00 0.00 2.29
487 489 3.282021 AGTGGTAGCCTGCATTTATGTG 58.718 45.455 0.00 0.00 0.00 3.21
488 490 3.054434 AGTGGTAGCCTGCATTTATGTGA 60.054 43.478 0.00 0.00 0.00 3.58
489 491 3.313526 GTGGTAGCCTGCATTTATGTGAG 59.686 47.826 0.00 0.00 0.00 3.51
490 492 2.291741 GGTAGCCTGCATTTATGTGAGC 59.708 50.000 0.00 0.00 0.00 4.26
491 493 2.431954 AGCCTGCATTTATGTGAGCT 57.568 45.000 0.00 0.00 0.00 4.09
492 494 3.565764 AGCCTGCATTTATGTGAGCTA 57.434 42.857 0.00 0.00 0.00 3.32
493 495 3.889815 AGCCTGCATTTATGTGAGCTAA 58.110 40.909 0.00 0.00 0.00 3.09
494 496 4.272489 AGCCTGCATTTATGTGAGCTAAA 58.728 39.130 0.00 0.00 0.00 1.85
495 497 4.891756 AGCCTGCATTTATGTGAGCTAAAT 59.108 37.500 0.00 0.00 30.73 1.40
496 498 6.064060 AGCCTGCATTTATGTGAGCTAAATA 58.936 36.000 0.00 0.00 29.82 1.40
497 499 6.718454 AGCCTGCATTTATGTGAGCTAAATAT 59.282 34.615 0.00 0.00 29.82 1.28
498 500 7.025963 GCCTGCATTTATGTGAGCTAAATATC 58.974 38.462 0.00 0.00 29.82 1.63
499 501 7.094463 GCCTGCATTTATGTGAGCTAAATATCT 60.094 37.037 0.00 0.00 29.82 1.98
500 502 9.440773 CCTGCATTTATGTGAGCTAAATATCTA 57.559 33.333 0.00 0.00 29.82 1.98
534 536 3.486285 GCTGAAGAGCAAAACAGCC 57.514 52.632 12.57 0.00 46.46 4.85
535 537 0.957362 GCTGAAGAGCAAAACAGCCT 59.043 50.000 12.57 0.00 46.46 4.58
536 538 1.068679 GCTGAAGAGCAAAACAGCCTC 60.069 52.381 12.57 0.00 46.46 4.70
537 539 1.538950 CTGAAGAGCAAAACAGCCTCC 59.461 52.381 0.00 0.00 34.23 4.30
538 540 0.519077 GAAGAGCAAAACAGCCTCCG 59.481 55.000 0.00 0.00 34.23 4.63
539 541 0.179018 AAGAGCAAAACAGCCTCCGT 60.179 50.000 0.00 0.00 34.23 4.69
540 542 0.603975 AGAGCAAAACAGCCTCCGTC 60.604 55.000 0.00 0.00 34.23 4.79
541 543 1.578206 GAGCAAAACAGCCTCCGTCC 61.578 60.000 0.00 0.00 34.23 4.79
542 544 1.896660 GCAAAACAGCCTCCGTCCA 60.897 57.895 0.00 0.00 0.00 4.02
543 545 1.856265 GCAAAACAGCCTCCGTCCAG 61.856 60.000 0.00 0.00 0.00 3.86
544 546 1.073199 AAAACAGCCTCCGTCCAGG 59.927 57.895 0.00 0.00 42.97 4.45
545 547 1.705997 AAAACAGCCTCCGTCCAGGT 61.706 55.000 0.00 0.00 41.99 4.00
546 548 2.113243 AAACAGCCTCCGTCCAGGTC 62.113 60.000 0.00 0.00 41.99 3.85
547 549 3.775654 CAGCCTCCGTCCAGGTCC 61.776 72.222 0.00 0.00 41.99 4.46
548 550 4.316823 AGCCTCCGTCCAGGTCCA 62.317 66.667 0.00 0.00 41.99 4.02
582 584 4.379243 AGAGCAACTCCCCACGCG 62.379 66.667 3.53 3.53 0.00 6.01
661 663 3.263941 GCAACGCCACCACCTAAG 58.736 61.111 0.00 0.00 0.00 2.18
664 666 0.034896 CAACGCCACCACCTAAGACT 59.965 55.000 0.00 0.00 0.00 3.24
665 667 1.274167 CAACGCCACCACCTAAGACTA 59.726 52.381 0.00 0.00 0.00 2.59
667 669 1.549170 ACGCCACCACCTAAGACTAAG 59.451 52.381 0.00 0.00 0.00 2.18
668 670 1.822990 CGCCACCACCTAAGACTAAGA 59.177 52.381 0.00 0.00 0.00 2.10
672 674 3.100671 CACCACCTAAGACTAAGAGGCT 58.899 50.000 0.00 0.00 32.54 4.58
673 675 4.279145 CACCACCTAAGACTAAGAGGCTA 58.721 47.826 0.00 0.00 27.04 3.93
674 676 4.098196 CACCACCTAAGACTAAGAGGCTAC 59.902 50.000 0.00 0.00 27.04 3.58
675 677 3.637694 CCACCTAAGACTAAGAGGCTACC 59.362 52.174 0.00 0.00 27.04 3.18
678 680 3.637694 CCTAAGACTAAGAGGCTACCACC 59.362 52.174 0.00 0.00 27.04 4.61
680 682 1.361543 AGACTAAGAGGCTACCACCCA 59.638 52.381 0.00 0.00 26.27 4.51
681 683 1.481363 GACTAAGAGGCTACCACCCAC 59.519 57.143 0.00 0.00 0.00 4.61
712 830 1.854227 GGCGACAATGGCTACTACTC 58.146 55.000 0.00 0.00 0.00 2.59
713 831 1.136305 GGCGACAATGGCTACTACTCA 59.864 52.381 0.00 0.00 0.00 3.41
737 858 0.610687 CGCCTTCTTCCTCCTCAACT 59.389 55.000 0.00 0.00 0.00 3.16
834 1015 3.488090 CGGCCGACGCTTTCTTCC 61.488 66.667 24.07 0.00 34.82 3.46
924 1111 2.162809 CGGACGGTAAAAATTTCCCCAG 59.837 50.000 0.00 0.00 0.00 4.45
1078 1265 2.047274 CGCCCGTCATCACCTTGT 60.047 61.111 0.00 0.00 0.00 3.16
1111 1298 1.246737 CCTTGTCTGCCTTGGCTTCC 61.247 60.000 13.18 1.21 0.00 3.46
1302 1489 0.240145 AAGACATCTTCGACGACGCA 59.760 50.000 1.48 0.00 39.58 5.24
1336 1524 3.610619 CTCGGGTGCTGGCATCACA 62.611 63.158 21.56 2.43 36.22 3.58
1354 1542 2.034879 ATCTGTGGTGCTTTCGCCG 61.035 57.895 0.00 0.00 45.79 6.46
1363 1551 3.049674 CTTTCGCCGCCTGCAGAA 61.050 61.111 17.39 0.00 41.33 3.02
1414 1699 3.126001 TCGTCCAGACAAAATCAGCTT 57.874 42.857 0.00 0.00 0.00 3.74
1417 1702 3.149196 GTCCAGACAAAATCAGCTTGGA 58.851 45.455 0.00 0.00 0.00 3.53
1430 1715 0.035056 GCTTGGATACTGCAGTGGGT 60.035 55.000 29.57 14.84 36.88 4.51
1441 1726 1.296392 CAGTGGGTGCGGAAGATCA 59.704 57.895 0.00 0.00 0.00 2.92
1442 1727 0.107508 CAGTGGGTGCGGAAGATCAT 60.108 55.000 0.00 0.00 0.00 2.45
1451 1736 1.270041 GCGGAAGATCATCTCCTGGTC 60.270 57.143 0.00 0.00 34.99 4.02
1454 1739 2.295909 GGAAGATCATCTCCTGGTCTCG 59.704 54.545 0.00 0.00 44.90 4.04
1467 1752 0.818445 GGTCTCGATGGCTCCTACGA 60.818 60.000 0.00 0.00 0.00 3.43
1509 2031 4.406972 CCTGTGATAACCTCAGAATCCTCA 59.593 45.833 0.00 0.00 38.34 3.86
1516 2038 1.418334 CTCAGAATCCTCATCGGGGT 58.582 55.000 0.00 0.00 0.00 4.95
1560 2082 3.000925 GCTCGTTCGACTTGTTCAAGAAA 59.999 43.478 17.75 7.37 0.00 2.52
1564 2086 4.666176 CGTTCGACTTGTTCAAGAAATGTG 59.334 41.667 17.75 2.12 0.00 3.21
1565 2087 4.209452 TCGACTTGTTCAAGAAATGTGC 57.791 40.909 17.75 0.00 0.00 4.57
1567 2089 4.335315 TCGACTTGTTCAAGAAATGTGCTT 59.665 37.500 17.75 0.00 0.00 3.91
1580 2102 7.783090 AGAAATGTGCTTCATCACTATACAG 57.217 36.000 0.00 0.00 37.81 2.74
1650 2175 5.068198 GTCATATCAAGTGGTTGGCATCAAT 59.932 40.000 0.00 0.00 35.10 2.57
1711 2424 4.577693 TGGCTCTTCATTTCATATGCACTC 59.422 41.667 0.00 0.00 0.00 3.51
1713 2426 5.277876 GGCTCTTCATTTCATATGCACTCTG 60.278 44.000 0.00 0.00 0.00 3.35
1723 2436 5.733676 TCATATGCACTCTGTGTACATGTT 58.266 37.500 2.30 0.00 33.89 2.71
1729 2442 4.666655 GCACTCTGTGTACATGTTAAAGCG 60.667 45.833 2.30 0.00 35.75 4.68
1734 2447 3.678072 TGTGTACATGTTAAAGCGCTCTC 59.322 43.478 12.06 1.99 0.00 3.20
1737 2450 5.230306 GTGTACATGTTAAAGCGCTCTCTAG 59.770 44.000 12.06 0.02 0.00 2.43
1740 2453 5.665459 ACATGTTAAAGCGCTCTCTAGATT 58.335 37.500 12.06 1.03 0.00 2.40
1781 2498 9.878599 CGTTATTTGAATTTTCTGTTAGTCTGT 57.121 29.630 0.00 0.00 0.00 3.41
1821 2539 4.601857 ACTCCTATATTTATGGTGTGGGGG 59.398 45.833 0.00 0.00 0.00 5.40
1833 2594 1.112315 TGTGGGGGCAAACATGTCAC 61.112 55.000 0.00 1.41 0.00 3.67
1835 2596 2.282783 GGGGGCAAACATGTCACCC 61.283 63.158 18.24 18.24 40.05 4.61
1863 2624 0.165727 TGCGCGTTCAAATAGCACTG 59.834 50.000 8.43 0.00 32.43 3.66
1924 2685 9.350357 TGTAATACTAATTCTCTCGTTTCACAC 57.650 33.333 0.00 0.00 0.00 3.82
1925 2686 7.829378 AATACTAATTCTCTCGTTTCACACC 57.171 36.000 0.00 0.00 0.00 4.16
1926 2687 5.209818 ACTAATTCTCTCGTTTCACACCA 57.790 39.130 0.00 0.00 0.00 4.17
1944 3220 6.204688 TCACACCATCAGACTTGTATTTGAAC 59.795 38.462 0.00 0.00 0.00 3.18
1945 3221 5.473504 ACACCATCAGACTTGTATTTGAACC 59.526 40.000 0.00 0.00 0.00 3.62
2003 3311 1.183676 ACTAGTTCCGCGGTTGGTCT 61.184 55.000 27.15 18.01 0.00 3.85
2004 3312 0.813184 CTAGTTCCGCGGTTGGTCTA 59.187 55.000 27.15 18.15 0.00 2.59
2006 3314 1.005867 GTTCCGCGGTTGGTCTACA 60.006 57.895 27.15 0.00 0.00 2.74
2093 3738 4.630505 TGTTGATTTGCGCCGTAATACTAA 59.369 37.500 4.18 0.00 0.00 2.24
2097 3742 5.352016 TGATTTGCGCCGTAATACTAAGTTT 59.648 36.000 4.18 0.00 0.00 2.66
2101 3746 4.451774 TGCGCCGTAATACTAAGTTTTGTT 59.548 37.500 4.18 0.00 0.00 2.83
2104 3749 6.238508 CGCCGTAATACTAAGTTTTGTTCTG 58.761 40.000 0.00 0.00 0.00 3.02
2120 3798 9.173939 GTTTTGTTCTGTCAATGATCTTTGTAG 57.826 33.333 17.97 16.57 0.00 2.74
2122 3800 9.554395 TTTGTTCTGTCAATGATCTTTGTAGTA 57.446 29.630 17.97 10.53 0.00 1.82
2125 3803 9.979270 GTTCTGTCAATGATCTTTGTAGTATTG 57.021 33.333 17.97 6.53 0.00 1.90
2141 3819 5.824904 AGTATTGTTTCTGCATGTCCATC 57.175 39.130 0.00 0.00 0.00 3.51
2161 3842 3.037549 TCTGCCAATTTTTGTTCCACCT 58.962 40.909 0.00 0.00 0.00 4.00
2166 3847 4.119136 CCAATTTTTGTTCCACCTGTGAC 58.881 43.478 0.00 0.00 0.00 3.67
2180 3861 3.748048 ACCTGTGACATCTCATTTGTTCG 59.252 43.478 0.00 0.00 0.00 3.95
2392 4076 0.258774 AACTCTTGGGTGTGGCAAGT 59.741 50.000 0.00 0.00 0.00 3.16
2439 4123 5.241506 CCAACAAGAACAGGAGCAGAATTAA 59.758 40.000 0.00 0.00 0.00 1.40
2472 4156 7.054491 ACAAACACAGGAGCAAAATTAGAAT 57.946 32.000 0.00 0.00 0.00 2.40
2475 4159 6.029346 ACACAGGAGCAAAATTAGAATTGG 57.971 37.500 0.00 0.00 0.00 3.16
2479 4163 6.948309 ACAGGAGCAAAATTAGAATTGGTAGT 59.052 34.615 0.00 0.00 37.38 2.73
2480 4164 7.121315 ACAGGAGCAAAATTAGAATTGGTAGTC 59.879 37.037 0.00 0.00 37.38 2.59
2482 4166 6.183360 GGAGCAAAATTAGAATTGGTAGTCCC 60.183 42.308 0.00 0.00 37.38 4.46
2483 4167 6.494059 AGCAAAATTAGAATTGGTAGTCCCT 58.506 36.000 0.00 0.00 35.66 4.20
2504 4188 5.578005 CTGTAAGGTATTTGGTCGAGAGA 57.422 43.478 0.00 0.00 38.16 3.10
2526 4210 7.928167 AGAGAAGTTGCGTGATGATATAATGAA 59.072 33.333 0.00 0.00 0.00 2.57
2609 4293 6.128486 TCTGTGATTGGCATATATGGTGTTT 58.872 36.000 14.51 0.00 0.00 2.83
2620 4304 1.131303 ATGGTGTTTCAGGGTCCGGA 61.131 55.000 0.00 0.00 0.00 5.14
2629 4313 1.203087 TCAGGGTCCGGAAAGACTACA 60.203 52.381 5.23 0.00 36.95 2.74
2671 4355 7.173907 CGAGATTACATAAAGGAGGAATGCAAT 59.826 37.037 0.00 0.00 0.00 3.56
2686 4376 7.447594 AGGAATGCAATGAGAAACTTTTTGAT 58.552 30.769 0.00 0.00 0.00 2.57
2715 4405 3.742385 TGTGCATTCATGTGTCTGAGAA 58.258 40.909 0.00 0.00 0.00 2.87
2761 4451 7.425577 TCATGAAATGCTGAAGGATATTACG 57.574 36.000 0.00 0.00 46.21 3.18
2830 4520 5.246981 AGTTGAAGGAATCATTGAGTGGA 57.753 39.130 0.00 0.00 38.03 4.02
2891 4581 1.208535 ACAAGAACGACCCACAACTGA 59.791 47.619 0.00 0.00 0.00 3.41
3049 4739 7.948357 ACATGAAGATGTTTATGCATTATGCT 58.052 30.769 18.44 6.57 41.22 3.79
3082 4778 8.856247 GGTAAAAGTATTGCCGTTAAAGAATTG 58.144 33.333 0.00 0.00 0.00 2.32
3271 4967 2.805657 GCTTAATCCGGACATAAGGCGT 60.806 50.000 27.57 2.32 0.00 5.68
3278 4974 1.202031 CGGACATAAGGCGTTGCTTTC 60.202 52.381 0.97 0.00 0.00 2.62
3305 5001 5.013547 TCTGCAATATTTTTCCCCGAAGAA 58.986 37.500 0.00 0.00 0.00 2.52
3367 5063 2.029918 GCAAGGGTTTGTAAAGAGCAGG 60.030 50.000 0.00 0.00 36.65 4.85
3391 5087 2.079925 GCAACAGAGGACATGGAAGAC 58.920 52.381 0.00 0.00 0.00 3.01
3419 5115 5.686124 GCTGAGGGCTACATTCAAGAGTTAT 60.686 44.000 0.00 0.00 38.06 1.89
3459 5164 8.351495 CTTCAAGCAGAAGTAGATGATTACTC 57.649 38.462 9.94 0.00 46.97 2.59
3461 5166 7.487484 TCAAGCAGAAGTAGATGATTACTCTG 58.513 38.462 0.00 0.00 32.84 3.35
3462 5167 7.340487 TCAAGCAGAAGTAGATGATTACTCTGA 59.660 37.037 12.53 0.00 34.41 3.27
3463 5168 7.652524 AGCAGAAGTAGATGATTACTCTGAA 57.347 36.000 12.53 0.00 34.41 3.02
3464 5169 7.715657 AGCAGAAGTAGATGATTACTCTGAAG 58.284 38.462 12.53 0.00 34.41 3.02
3465 5170 7.341769 AGCAGAAGTAGATGATTACTCTGAAGT 59.658 37.037 12.53 0.00 39.66 3.01
3552 5284 6.942005 TGCTTCAGAATTGAGAATACAAGGAA 59.058 34.615 0.00 0.00 34.15 3.36
3709 5447 5.044476 TGTTAATGGGGATACACCAGTTGAT 60.044 40.000 0.00 0.00 42.17 2.57
3907 6066 3.868619 ACTTTACCAAGGGCACTAACA 57.131 42.857 0.00 0.00 33.82 2.41
3916 6075 4.039124 CCAAGGGCACTAACAAAACTTCAT 59.961 41.667 0.00 0.00 0.00 2.57
3945 6104 4.439289 CCAGCTGCTAGATTTTTACTTGGC 60.439 45.833 8.66 0.00 0.00 4.52
3946 6105 4.156556 CAGCTGCTAGATTTTTACTTGGCA 59.843 41.667 0.00 0.00 0.00 4.92
4155 6337 0.251073 ATCAAGGGCCTGCAAAATGC 59.749 50.000 6.92 0.00 45.29 3.56
4159 6341 1.870064 AGGGCCTGCAAAATGCTAAT 58.130 45.000 4.50 0.00 45.31 1.73
4479 6692 1.133513 TGGTGTGCTCCAGATTTGGTT 60.134 47.619 1.59 0.00 45.26 3.67
4691 6914 0.038166 TGAGCACATCCCCAGGAAAC 59.962 55.000 0.00 0.00 34.34 2.78
4693 6916 0.038744 AGCACATCCCCAGGAAACAG 59.961 55.000 0.00 0.00 34.34 3.16
4865 7105 2.276732 TTCAGAAAGGCAGTGAAGGG 57.723 50.000 0.00 0.00 0.00 3.95
4915 7161 3.887716 GAGATTTAGGCATGGCAAGACAT 59.112 43.478 22.64 5.64 0.00 3.06
4932 7178 6.506147 CAAGACATGTGAAGGACATTTGAAA 58.494 36.000 1.15 0.00 43.20 2.69
4933 7179 6.906157 AGACATGTGAAGGACATTTGAAAT 57.094 33.333 1.15 0.00 43.20 2.17
4934 7180 6.684686 AGACATGTGAAGGACATTTGAAATG 58.315 36.000 15.82 15.82 43.20 2.32
4935 7181 5.232463 ACATGTGAAGGACATTTGAAATGC 58.768 37.500 17.19 10.12 43.20 3.56
4936 7182 4.255833 TGTGAAGGACATTTGAAATGCC 57.744 40.909 17.19 17.52 0.00 4.40
4937 7183 3.006752 TGTGAAGGACATTTGAAATGCCC 59.993 43.478 17.19 15.79 0.00 5.36
4938 7184 3.006752 GTGAAGGACATTTGAAATGCCCA 59.993 43.478 22.39 13.25 0.00 5.36
4939 7185 3.258872 TGAAGGACATTTGAAATGCCCAG 59.741 43.478 22.39 0.00 0.00 4.45
4940 7186 1.551883 AGGACATTTGAAATGCCCAGC 59.448 47.619 22.39 6.44 0.00 4.85
4941 7187 1.632422 GACATTTGAAATGCCCAGCG 58.368 50.000 17.19 0.00 0.00 5.18
4942 7188 1.202114 GACATTTGAAATGCCCAGCGA 59.798 47.619 17.19 0.00 0.00 4.93
4943 7189 1.617850 ACATTTGAAATGCCCAGCGAA 59.382 42.857 17.19 0.00 0.00 4.70
4944 7190 2.036992 ACATTTGAAATGCCCAGCGAAA 59.963 40.909 17.19 0.00 0.00 3.46
4945 7191 2.147436 TTTGAAATGCCCAGCGAAAC 57.853 45.000 0.00 0.00 0.00 2.78
4946 7192 1.327303 TTGAAATGCCCAGCGAAACT 58.673 45.000 0.00 0.00 0.00 2.66
4947 7193 0.597568 TGAAATGCCCAGCGAAACTG 59.402 50.000 0.00 0.00 46.77 3.16
4948 7194 0.733909 GAAATGCCCAGCGAAACTGC 60.734 55.000 0.00 0.00 45.78 4.40
4949 7195 1.462731 AAATGCCCAGCGAAACTGCA 61.463 50.000 0.00 0.00 45.78 4.41
4950 7196 1.870055 AATGCCCAGCGAAACTGCAG 61.870 55.000 13.48 13.48 45.78 4.41
4951 7197 3.741476 GCCCAGCGAAACTGCAGG 61.741 66.667 19.93 0.31 45.78 4.85
4952 7198 2.032528 CCCAGCGAAACTGCAGGA 59.967 61.111 19.93 0.00 43.67 3.86
4953 7199 1.377725 CCCAGCGAAACTGCAGGAT 60.378 57.895 19.93 5.87 43.67 3.24
4954 7200 1.372087 CCCAGCGAAACTGCAGGATC 61.372 60.000 19.93 14.30 43.67 3.36
4955 7201 1.699656 CCAGCGAAACTGCAGGATCG 61.700 60.000 28.52 28.52 43.67 3.69
4956 7202 1.448540 AGCGAAACTGCAGGATCGG 60.449 57.895 31.33 19.51 37.31 4.18
4957 7203 1.447838 GCGAAACTGCAGGATCGGA 60.448 57.895 31.33 0.00 35.91 4.55
4958 7204 1.424493 GCGAAACTGCAGGATCGGAG 61.424 60.000 31.33 14.29 35.91 4.63
4959 7205 0.108615 CGAAACTGCAGGATCGGAGT 60.109 55.000 26.46 0.71 39.53 3.85
4961 7207 2.003301 GAAACTGCAGGATCGGAGTTC 58.997 52.381 19.93 4.58 45.55 3.01
4962 7208 0.250513 AACTGCAGGATCGGAGTTCC 59.749 55.000 19.93 0.00 43.17 3.62
4963 7209 1.144936 CTGCAGGATCGGAGTTCCC 59.855 63.158 5.57 0.00 33.45 3.97
4964 7210 1.612146 TGCAGGATCGGAGTTCCCA 60.612 57.895 0.00 0.00 33.45 4.37
4965 7211 1.144936 GCAGGATCGGAGTTCCCAG 59.855 63.158 0.00 0.00 33.45 4.45
4966 7212 1.330655 GCAGGATCGGAGTTCCCAGA 61.331 60.000 0.00 0.00 33.45 3.86
4967 7213 1.418334 CAGGATCGGAGTTCCCAGAT 58.582 55.000 0.00 0.00 33.45 2.90
4968 7214 1.069823 CAGGATCGGAGTTCCCAGATG 59.930 57.143 0.00 0.00 33.45 2.90
4969 7215 0.394565 GGATCGGAGTTCCCAGATGG 59.605 60.000 0.00 0.00 31.53 3.51
4970 7216 1.123928 GATCGGAGTTCCCAGATGGT 58.876 55.000 0.00 0.00 34.77 3.55
4971 7217 0.833287 ATCGGAGTTCCCAGATGGTG 59.167 55.000 0.00 0.00 34.77 4.17
4972 7218 0.252057 TCGGAGTTCCCAGATGGTGA 60.252 55.000 0.00 0.00 34.77 4.02
4973 7219 0.833287 CGGAGTTCCCAGATGGTGAT 59.167 55.000 0.00 0.00 34.77 3.06
4974 7220 1.473965 CGGAGTTCCCAGATGGTGATG 60.474 57.143 0.00 0.00 34.77 3.07
4975 7221 1.839994 GGAGTTCCCAGATGGTGATGA 59.160 52.381 0.00 0.00 34.77 2.92
4976 7222 2.441001 GGAGTTCCCAGATGGTGATGAT 59.559 50.000 0.00 0.00 34.77 2.45
4977 7223 3.474600 GAGTTCCCAGATGGTGATGATG 58.525 50.000 0.00 0.00 34.77 3.07
4978 7224 2.174210 AGTTCCCAGATGGTGATGATGG 59.826 50.000 0.00 0.00 34.77 3.51
4979 7225 3.739703 CCCAGATGGTGATGATGGG 57.260 57.895 0.00 0.00 44.42 4.00
4980 7226 0.848735 CCCAGATGGTGATGATGGGT 59.151 55.000 0.21 0.00 44.71 4.51
4981 7227 1.478105 CCCAGATGGTGATGATGGGTG 60.478 57.143 0.21 0.00 44.71 4.61
4982 7228 1.213678 CCAGATGGTGATGATGGGTGT 59.786 52.381 0.00 0.00 0.00 4.16
4983 7229 2.357465 CCAGATGGTGATGATGGGTGTT 60.357 50.000 0.00 0.00 0.00 3.32
4984 7230 3.117926 CCAGATGGTGATGATGGGTGTTA 60.118 47.826 0.00 0.00 0.00 2.41
4985 7231 4.525996 CAGATGGTGATGATGGGTGTTAA 58.474 43.478 0.00 0.00 0.00 2.01
4986 7232 4.949238 CAGATGGTGATGATGGGTGTTAAA 59.051 41.667 0.00 0.00 0.00 1.52
4987 7233 5.418524 CAGATGGTGATGATGGGTGTTAAAA 59.581 40.000 0.00 0.00 0.00 1.52
4988 7234 5.418840 AGATGGTGATGATGGGTGTTAAAAC 59.581 40.000 0.00 0.00 0.00 2.43
4989 7235 4.735369 TGGTGATGATGGGTGTTAAAACT 58.265 39.130 0.00 0.00 0.00 2.66
4990 7236 4.764823 TGGTGATGATGGGTGTTAAAACTC 59.235 41.667 0.00 0.00 0.00 3.01
4991 7237 5.010282 GGTGATGATGGGTGTTAAAACTCT 58.990 41.667 0.00 0.00 0.00 3.24
4992 7238 5.476945 GGTGATGATGGGTGTTAAAACTCTT 59.523 40.000 0.00 0.00 0.00 2.85
4993 7239 6.657541 GGTGATGATGGGTGTTAAAACTCTTA 59.342 38.462 0.00 0.00 0.00 2.10
4994 7240 7.361799 GGTGATGATGGGTGTTAAAACTCTTAC 60.362 40.741 0.00 0.00 0.00 2.34
4995 7241 7.390718 GTGATGATGGGTGTTAAAACTCTTACT 59.609 37.037 0.00 0.00 0.00 2.24
4996 7242 8.598916 TGATGATGGGTGTTAAAACTCTTACTA 58.401 33.333 0.00 0.00 0.00 1.82
4997 7243 9.099454 GATGATGGGTGTTAAAACTCTTACTAG 57.901 37.037 0.00 0.00 0.00 2.57
4998 7244 6.877322 TGATGGGTGTTAAAACTCTTACTAGC 59.123 38.462 0.00 0.00 0.00 3.42
4999 7245 6.177310 TGGGTGTTAAAACTCTTACTAGCA 57.823 37.500 0.00 0.00 0.00 3.49
5000 7246 6.228258 TGGGTGTTAAAACTCTTACTAGCAG 58.772 40.000 0.00 0.00 0.00 4.24
5001 7247 6.183361 TGGGTGTTAAAACTCTTACTAGCAGT 60.183 38.462 0.00 0.00 0.00 4.40
5002 7248 6.709397 GGGTGTTAAAACTCTTACTAGCAGTT 59.291 38.462 0.00 0.00 31.48 3.16
5003 7249 7.228108 GGGTGTTAAAACTCTTACTAGCAGTTT 59.772 37.037 0.00 0.00 41.18 2.66
5004 7250 8.068380 GGTGTTAAAACTCTTACTAGCAGTTTG 58.932 37.037 9.33 0.00 39.70 2.93
5005 7251 7.586664 GTGTTAAAACTCTTACTAGCAGTTTGC 59.413 37.037 9.33 0.00 45.46 3.68
5015 7261 2.419057 GCAGTTTGCTTCCTGTGGT 58.581 52.632 0.00 0.00 40.96 4.16
5016 7262 0.746659 GCAGTTTGCTTCCTGTGGTT 59.253 50.000 0.00 0.00 40.96 3.67
5017 7263 1.136891 GCAGTTTGCTTCCTGTGGTTT 59.863 47.619 0.00 0.00 40.96 3.27
5018 7264 2.813061 CAGTTTGCTTCCTGTGGTTTG 58.187 47.619 0.00 0.00 0.00 2.93
5019 7265 2.166254 CAGTTTGCTTCCTGTGGTTTGT 59.834 45.455 0.00 0.00 0.00 2.83
5020 7266 2.166254 AGTTTGCTTCCTGTGGTTTGTG 59.834 45.455 0.00 0.00 0.00 3.33
5021 7267 2.136298 TTGCTTCCTGTGGTTTGTGA 57.864 45.000 0.00 0.00 0.00 3.58
5022 7268 2.363306 TGCTTCCTGTGGTTTGTGAT 57.637 45.000 0.00 0.00 0.00 3.06
5023 7269 1.955778 TGCTTCCTGTGGTTTGTGATG 59.044 47.619 0.00 0.00 0.00 3.07
5024 7270 2.229792 GCTTCCTGTGGTTTGTGATGA 58.770 47.619 0.00 0.00 0.00 2.92
5025 7271 2.821969 GCTTCCTGTGGTTTGTGATGAT 59.178 45.455 0.00 0.00 0.00 2.45
5026 7272 4.009675 GCTTCCTGTGGTTTGTGATGATA 58.990 43.478 0.00 0.00 0.00 2.15
5027 7273 4.142600 GCTTCCTGTGGTTTGTGATGATAC 60.143 45.833 0.00 0.00 0.00 2.24
5028 7274 3.950397 TCCTGTGGTTTGTGATGATACC 58.050 45.455 0.00 0.00 0.00 2.73
5029 7275 3.329225 TCCTGTGGTTTGTGATGATACCA 59.671 43.478 0.00 0.00 38.29 3.25
5030 7276 4.078537 CCTGTGGTTTGTGATGATACCAA 58.921 43.478 0.00 0.00 41.95 3.67
5031 7277 4.156556 CCTGTGGTTTGTGATGATACCAAG 59.843 45.833 0.00 0.00 41.95 3.61
5032 7278 4.078537 TGTGGTTTGTGATGATACCAAGG 58.921 43.478 0.00 0.00 41.95 3.61
5033 7279 4.202514 TGTGGTTTGTGATGATACCAAGGA 60.203 41.667 0.00 0.00 41.95 3.36
5034 7280 4.949856 GTGGTTTGTGATGATACCAAGGAT 59.050 41.667 0.00 0.00 41.95 3.24
5035 7281 6.119536 GTGGTTTGTGATGATACCAAGGATA 58.880 40.000 0.00 0.00 41.95 2.59
5036 7282 6.772716 GTGGTTTGTGATGATACCAAGGATAT 59.227 38.462 0.00 0.00 41.95 1.63
5037 7283 6.998074 TGGTTTGTGATGATACCAAGGATATC 59.002 38.462 0.00 0.00 37.71 1.63
5038 7284 6.147821 GGTTTGTGATGATACCAAGGATATCG 59.852 42.308 0.00 0.00 32.58 2.92
5039 7285 6.419484 TTGTGATGATACCAAGGATATCGT 57.581 37.500 0.00 0.00 32.58 3.73
5040 7286 6.025749 TGTGATGATACCAAGGATATCGTC 57.974 41.667 16.03 16.03 42.07 4.20
5041 7287 5.775195 TGTGATGATACCAAGGATATCGTCT 59.225 40.000 19.74 0.00 42.16 4.18
5042 7288 6.096036 GTGATGATACCAAGGATATCGTCTG 58.904 44.000 19.74 0.50 42.16 3.51
5043 7289 5.775195 TGATGATACCAAGGATATCGTCTGT 59.225 40.000 19.74 2.26 42.16 3.41
5044 7290 6.267699 TGATGATACCAAGGATATCGTCTGTT 59.732 38.462 19.74 0.00 42.16 3.16
5045 7291 6.479972 TGATACCAAGGATATCGTCTGTTT 57.520 37.500 0.00 0.00 32.58 2.83
5046 7292 6.884832 TGATACCAAGGATATCGTCTGTTTT 58.115 36.000 0.00 0.00 32.58 2.43
5047 7293 8.014070 TGATACCAAGGATATCGTCTGTTTTA 57.986 34.615 0.00 0.00 32.58 1.52
5048 7294 8.647796 TGATACCAAGGATATCGTCTGTTTTAT 58.352 33.333 0.00 0.00 32.58 1.40
5051 7297 8.019656 ACCAAGGATATCGTCTGTTTTATAGT 57.980 34.615 0.00 0.00 0.00 2.12
5052 7298 9.139734 ACCAAGGATATCGTCTGTTTTATAGTA 57.860 33.333 0.00 0.00 0.00 1.82
5053 7299 9.976511 CCAAGGATATCGTCTGTTTTATAGTAA 57.023 33.333 0.00 0.00 0.00 2.24
5062 7308 9.454585 TCGTCTGTTTTATAGTAATAATGTCGG 57.545 33.333 0.00 0.00 0.00 4.79
5063 7309 9.241317 CGTCTGTTTTATAGTAATAATGTCGGT 57.759 33.333 0.00 0.00 0.00 4.69
5072 7318 8.930846 ATAGTAATAATGTCGGTAGTACCACT 57.069 34.615 19.41 12.94 38.47 4.00
5073 7319 7.035840 AGTAATAATGTCGGTAGTACCACTG 57.964 40.000 19.41 3.35 38.47 3.66
5074 7320 2.667473 AATGTCGGTAGTACCACTGC 57.333 50.000 19.41 6.35 38.47 4.40
5075 7321 0.822164 ATGTCGGTAGTACCACTGCC 59.178 55.000 19.41 3.58 45.96 4.85
5079 7325 2.986492 GGTAGTACCACTGCCTGGA 58.014 57.895 14.82 0.00 45.95 3.86
5080 7326 1.497161 GGTAGTACCACTGCCTGGAT 58.503 55.000 14.82 0.00 45.95 3.41
5081 7327 1.838077 GGTAGTACCACTGCCTGGATT 59.162 52.381 14.82 0.00 45.95 3.01
5082 7328 2.420129 GGTAGTACCACTGCCTGGATTG 60.420 54.545 14.82 0.00 45.95 2.67
5083 7329 0.620556 AGTACCACTGCCTGGATTGG 59.379 55.000 0.00 2.23 43.95 3.16
5237 7483 4.096382 CCTAAGGCTGCGAAACATGTAATT 59.904 41.667 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.047830 GGCATGTAGCTAGGGTTAGGT 58.952 52.381 0.00 0.00 44.79 3.08
29 30 1.202915 GGTGGGGGAACTTCGGTTTTA 60.203 52.381 0.00 0.00 38.41 1.52
111 112 1.704641 CACCGTATCCCAGATCTCCA 58.295 55.000 0.00 0.00 0.00 3.86
140 141 1.965643 AGCTGCTCATGATCTCTCCTC 59.034 52.381 0.00 0.00 0.00 3.71
180 181 3.942115 GGGAGCAAACAGGAAGAGTTATC 59.058 47.826 0.00 0.00 0.00 1.75
182 183 2.979678 AGGGAGCAAACAGGAAGAGTTA 59.020 45.455 0.00 0.00 0.00 2.24
187 188 4.082026 CCAATTTAGGGAGCAAACAGGAAG 60.082 45.833 0.00 0.00 0.00 3.46
191 193 4.871933 AACCAATTTAGGGAGCAAACAG 57.128 40.909 0.00 0.00 0.00 3.16
196 198 5.011227 GGTAACAAAACCAATTTAGGGAGCA 59.989 40.000 0.00 0.00 39.50 4.26
227 229 7.119846 GGTGCATAGTGTTTCTTCTTTGTAGAT 59.880 37.037 0.00 0.00 0.00 1.98
236 238 5.438761 AAACTGGTGCATAGTGTTTCTTC 57.561 39.130 7.27 0.00 0.00 2.87
243 245 7.984391 TGACATAATTAAACTGGTGCATAGTG 58.016 34.615 7.27 0.00 0.00 2.74
249 251 5.971202 CCGAATGACATAATTAAACTGGTGC 59.029 40.000 0.00 0.00 0.00 5.01
250 252 7.315247 TCCGAATGACATAATTAAACTGGTG 57.685 36.000 0.00 0.00 0.00 4.17
251 253 7.931578 TTCCGAATGACATAATTAAACTGGT 57.068 32.000 0.00 0.00 0.00 4.00
252 254 9.450807 GATTTCCGAATGACATAATTAAACTGG 57.549 33.333 0.00 0.00 0.00 4.00
253 255 9.158364 CGATTTCCGAATGACATAATTAAACTG 57.842 33.333 0.00 0.00 41.76 3.16
254 256 7.855904 GCGATTTCCGAATGACATAATTAAACT 59.144 33.333 0.00 0.00 41.76 2.66
255 257 7.855904 AGCGATTTCCGAATGACATAATTAAAC 59.144 33.333 0.00 0.00 41.76 2.01
256 258 7.855409 CAGCGATTTCCGAATGACATAATTAAA 59.145 33.333 0.00 0.00 41.76 1.52
257 259 7.351981 CAGCGATTTCCGAATGACATAATTAA 58.648 34.615 0.00 0.00 41.76 1.40
258 260 6.073276 CCAGCGATTTCCGAATGACATAATTA 60.073 38.462 0.00 0.00 41.76 1.40
259 261 5.277974 CCAGCGATTTCCGAATGACATAATT 60.278 40.000 0.00 0.00 41.76 1.40
260 262 4.214119 CCAGCGATTTCCGAATGACATAAT 59.786 41.667 0.00 0.00 41.76 1.28
261 263 3.559655 CCAGCGATTTCCGAATGACATAA 59.440 43.478 0.00 0.00 41.76 1.90
262 264 3.130633 CCAGCGATTTCCGAATGACATA 58.869 45.455 0.00 0.00 41.76 2.29
263 265 1.942657 CCAGCGATTTCCGAATGACAT 59.057 47.619 0.00 0.00 41.76 3.06
264 266 1.066502 TCCAGCGATTTCCGAATGACA 60.067 47.619 0.00 0.00 41.76 3.58
265 267 1.651987 TCCAGCGATTTCCGAATGAC 58.348 50.000 0.00 0.00 41.76 3.06
266 268 2.394930 TTCCAGCGATTTCCGAATGA 57.605 45.000 0.00 0.00 41.76 2.57
267 269 3.365832 CATTTCCAGCGATTTCCGAATG 58.634 45.455 0.00 0.00 41.76 2.67
268 270 2.223572 GCATTTCCAGCGATTTCCGAAT 60.224 45.455 0.00 0.00 41.76 3.34
269 271 1.132262 GCATTTCCAGCGATTTCCGAA 59.868 47.619 0.00 0.00 41.76 4.30
270 272 0.732571 GCATTTCCAGCGATTTCCGA 59.267 50.000 0.00 0.00 41.76 4.55
271 273 0.451383 TGCATTTCCAGCGATTTCCG 59.549 50.000 0.00 0.00 42.21 4.30
272 274 2.360165 AGATGCATTTCCAGCGATTTCC 59.640 45.455 0.00 0.00 33.85 3.13
273 275 3.705043 AGATGCATTTCCAGCGATTTC 57.295 42.857 0.00 0.00 33.85 2.17
274 276 5.068636 AGATAGATGCATTTCCAGCGATTT 58.931 37.500 0.00 0.00 33.85 2.17
275 277 4.649692 AGATAGATGCATTTCCAGCGATT 58.350 39.130 0.00 0.00 33.85 3.34
276 278 4.252073 GAGATAGATGCATTTCCAGCGAT 58.748 43.478 0.00 0.00 33.85 4.58
277 279 3.555795 GGAGATAGATGCATTTCCAGCGA 60.556 47.826 0.00 0.00 31.09 4.93
278 280 2.740981 GGAGATAGATGCATTTCCAGCG 59.259 50.000 0.00 0.00 31.09 5.18
279 281 3.080319 GGGAGATAGATGCATTTCCAGC 58.920 50.000 0.00 0.00 32.10 4.85
280 282 4.637387 AGGGAGATAGATGCATTTCCAG 57.363 45.455 0.00 0.00 32.10 3.86
281 283 5.393068 AAAGGGAGATAGATGCATTTCCA 57.607 39.130 0.00 0.00 32.10 3.53
282 284 6.721704 AAAAAGGGAGATAGATGCATTTCC 57.278 37.500 0.00 3.79 0.00 3.13
305 307 9.199982 AGTAGTTTACTCGATCGATTTCAAAAA 57.800 29.630 19.78 7.59 32.47 1.94
306 308 8.752766 AGTAGTTTACTCGATCGATTTCAAAA 57.247 30.769 19.78 7.94 32.47 2.44
307 309 8.390854 GAGTAGTTTACTCGATCGATTTCAAA 57.609 34.615 19.78 12.79 44.90 2.69
308 310 7.966157 GAGTAGTTTACTCGATCGATTTCAA 57.034 36.000 19.78 6.95 44.90 2.69
321 323 6.681729 TGTGAATGAAGGGAGTAGTTTACT 57.318 37.500 0.00 0.00 42.86 2.24
322 324 7.739498 TTTGTGAATGAAGGGAGTAGTTTAC 57.261 36.000 0.00 0.00 0.00 2.01
326 328 9.838339 CTTATATTTGTGAATGAAGGGAGTAGT 57.162 33.333 0.00 0.00 0.00 2.73
329 331 9.347240 CATCTTATATTTGTGAATGAAGGGAGT 57.653 33.333 0.00 0.00 0.00 3.85
330 332 9.347240 ACATCTTATATTTGTGAATGAAGGGAG 57.653 33.333 0.00 0.00 0.00 4.30
331 333 9.699410 AACATCTTATATTTGTGAATGAAGGGA 57.301 29.630 0.00 0.00 0.00 4.20
372 374 9.787532 CGTGTTTATTCATCCATTTTAGTTCAT 57.212 29.630 0.00 0.00 0.00 2.57
373 375 7.753132 GCGTGTTTATTCATCCATTTTAGTTCA 59.247 33.333 0.00 0.00 0.00 3.18
374 376 7.968405 AGCGTGTTTATTCATCCATTTTAGTTC 59.032 33.333 0.00 0.00 0.00 3.01
375 377 7.826690 AGCGTGTTTATTCATCCATTTTAGTT 58.173 30.769 0.00 0.00 0.00 2.24
376 378 7.391148 AGCGTGTTTATTCATCCATTTTAGT 57.609 32.000 0.00 0.00 0.00 2.24
377 379 9.781834 TTTAGCGTGTTTATTCATCCATTTTAG 57.218 29.630 0.00 0.00 0.00 1.85
379 381 9.651913 ATTTTAGCGTGTTTATTCATCCATTTT 57.348 25.926 0.00 0.00 0.00 1.82
380 382 9.086336 CATTTTAGCGTGTTTATTCATCCATTT 57.914 29.630 0.00 0.00 0.00 2.32
381 383 7.222611 GCATTTTAGCGTGTTTATTCATCCATT 59.777 33.333 0.00 0.00 0.00 3.16
382 384 6.697019 GCATTTTAGCGTGTTTATTCATCCAT 59.303 34.615 0.00 0.00 0.00 3.41
383 385 6.033341 GCATTTTAGCGTGTTTATTCATCCA 58.967 36.000 0.00 0.00 0.00 3.41
384 386 6.496524 GCATTTTAGCGTGTTTATTCATCC 57.503 37.500 0.00 0.00 0.00 3.51
398 400 5.163764 TGCATGTATATAGGCGCATTTTAGC 60.164 40.000 10.83 0.64 0.00 3.09
399 401 6.421377 TGCATGTATATAGGCGCATTTTAG 57.579 37.500 10.83 0.00 0.00 1.85
400 402 6.374053 ACATGCATGTATATAGGCGCATTTTA 59.626 34.615 30.50 0.00 39.68 1.52
401 403 5.183713 ACATGCATGTATATAGGCGCATTTT 59.816 36.000 30.50 0.00 39.68 1.82
402 404 4.701651 ACATGCATGTATATAGGCGCATTT 59.298 37.500 30.50 0.00 39.68 2.32
403 405 4.095334 CACATGCATGTATATAGGCGCATT 59.905 41.667 30.92 1.21 39.39 3.56
404 406 3.624410 CACATGCATGTATATAGGCGCAT 59.376 43.478 30.92 3.98 39.39 4.73
405 407 3.002102 CACATGCATGTATATAGGCGCA 58.998 45.455 30.92 3.19 39.39 6.09
406 408 3.261580 TCACATGCATGTATATAGGCGC 58.738 45.455 30.92 0.00 39.39 6.53
407 409 5.581874 TGATTCACATGCATGTATATAGGCG 59.418 40.000 30.92 16.41 39.39 5.52
408 410 6.820152 TCTGATTCACATGCATGTATATAGGC 59.180 38.462 30.92 16.51 39.39 3.93
409 411 8.782339 TTCTGATTCACATGCATGTATATAGG 57.218 34.615 30.92 17.82 39.39 2.57
434 436 9.458374 CGTTCACAAATAATGTCCTAACTTTTT 57.542 29.630 0.00 0.00 41.46 1.94
435 437 8.079809 CCGTTCACAAATAATGTCCTAACTTTT 58.920 33.333 0.00 0.00 41.46 2.27
436 438 7.446013 TCCGTTCACAAATAATGTCCTAACTTT 59.554 33.333 0.00 0.00 41.46 2.66
437 439 6.938030 TCCGTTCACAAATAATGTCCTAACTT 59.062 34.615 0.00 0.00 41.46 2.66
438 440 6.469410 TCCGTTCACAAATAATGTCCTAACT 58.531 36.000 0.00 0.00 41.46 2.24
439 441 6.183360 CCTCCGTTCACAAATAATGTCCTAAC 60.183 42.308 0.00 0.00 41.46 2.34
440 442 5.878116 CCTCCGTTCACAAATAATGTCCTAA 59.122 40.000 0.00 0.00 41.46 2.69
441 443 5.424757 CCTCCGTTCACAAATAATGTCCTA 58.575 41.667 0.00 0.00 41.46 2.94
442 444 4.261801 CCTCCGTTCACAAATAATGTCCT 58.738 43.478 0.00 0.00 41.46 3.85
443 445 3.377172 CCCTCCGTTCACAAATAATGTCC 59.623 47.826 0.00 0.00 41.46 4.02
444 446 4.258543 TCCCTCCGTTCACAAATAATGTC 58.741 43.478 0.00 0.00 41.46 3.06
445 447 4.261801 CTCCCTCCGTTCACAAATAATGT 58.738 43.478 0.00 0.00 45.34 2.71
446 448 4.094887 CACTCCCTCCGTTCACAAATAATG 59.905 45.833 0.00 0.00 0.00 1.90
447 449 4.261801 CACTCCCTCCGTTCACAAATAAT 58.738 43.478 0.00 0.00 0.00 1.28
448 450 3.558321 CCACTCCCTCCGTTCACAAATAA 60.558 47.826 0.00 0.00 0.00 1.40
449 451 2.027561 CCACTCCCTCCGTTCACAAATA 60.028 50.000 0.00 0.00 0.00 1.40
450 452 1.271379 CCACTCCCTCCGTTCACAAAT 60.271 52.381 0.00 0.00 0.00 2.32
451 453 0.107831 CCACTCCCTCCGTTCACAAA 59.892 55.000 0.00 0.00 0.00 2.83
452 454 1.052124 ACCACTCCCTCCGTTCACAA 61.052 55.000 0.00 0.00 0.00 3.33
453 455 0.178955 TACCACTCCCTCCGTTCACA 60.179 55.000 0.00 0.00 0.00 3.58
454 456 0.531200 CTACCACTCCCTCCGTTCAC 59.469 60.000 0.00 0.00 0.00 3.18
455 457 1.255667 GCTACCACTCCCTCCGTTCA 61.256 60.000 0.00 0.00 0.00 3.18
456 458 1.516423 GCTACCACTCCCTCCGTTC 59.484 63.158 0.00 0.00 0.00 3.95
457 459 1.988406 GGCTACCACTCCCTCCGTT 60.988 63.158 0.00 0.00 0.00 4.44
458 460 2.363925 GGCTACCACTCCCTCCGT 60.364 66.667 0.00 0.00 0.00 4.69
459 461 2.042843 AGGCTACCACTCCCTCCG 60.043 66.667 0.00 0.00 0.00 4.63
460 462 2.736826 GCAGGCTACCACTCCCTCC 61.737 68.421 0.00 0.00 0.00 4.30
461 463 1.341156 ATGCAGGCTACCACTCCCTC 61.341 60.000 0.00 0.00 0.00 4.30
462 464 0.916358 AATGCAGGCTACCACTCCCT 60.916 55.000 0.00 0.00 0.00 4.20
463 465 0.034089 AAATGCAGGCTACCACTCCC 60.034 55.000 0.00 0.00 0.00 4.30
464 466 2.710096 TAAATGCAGGCTACCACTCC 57.290 50.000 0.00 0.00 0.00 3.85
465 467 3.313526 CACATAAATGCAGGCTACCACTC 59.686 47.826 0.00 0.00 0.00 3.51
466 468 3.054434 TCACATAAATGCAGGCTACCACT 60.054 43.478 0.00 0.00 0.00 4.00
467 469 3.278574 TCACATAAATGCAGGCTACCAC 58.721 45.455 0.00 0.00 0.00 4.16
468 470 3.544684 CTCACATAAATGCAGGCTACCA 58.455 45.455 0.00 0.00 0.00 3.25
469 471 2.291741 GCTCACATAAATGCAGGCTACC 59.708 50.000 0.00 0.00 0.00 3.18
470 472 3.209410 AGCTCACATAAATGCAGGCTAC 58.791 45.455 0.00 0.00 31.04 3.58
471 473 3.565764 AGCTCACATAAATGCAGGCTA 57.434 42.857 0.00 0.00 31.04 3.93
472 474 2.431954 AGCTCACATAAATGCAGGCT 57.568 45.000 0.00 0.00 0.00 4.58
473 475 4.637483 TTTAGCTCACATAAATGCAGGC 57.363 40.909 0.00 0.00 0.00 4.85
474 476 8.332996 AGATATTTAGCTCACATAAATGCAGG 57.667 34.615 0.00 0.00 35.17 4.85
517 519 1.538950 GGAGGCTGTTTTGCTCTTCAG 59.461 52.381 0.00 0.00 0.00 3.02
518 520 1.609208 GGAGGCTGTTTTGCTCTTCA 58.391 50.000 0.00 0.00 0.00 3.02
519 521 0.519077 CGGAGGCTGTTTTGCTCTTC 59.481 55.000 0.00 0.00 0.00 2.87
520 522 0.179018 ACGGAGGCTGTTTTGCTCTT 60.179 50.000 0.00 0.00 0.00 2.85
521 523 0.603975 GACGGAGGCTGTTTTGCTCT 60.604 55.000 0.00 0.00 0.00 4.09
522 524 1.578206 GGACGGAGGCTGTTTTGCTC 61.578 60.000 0.00 0.00 0.00 4.26
523 525 1.600916 GGACGGAGGCTGTTTTGCT 60.601 57.895 0.00 0.00 0.00 3.91
524 526 1.856265 CTGGACGGAGGCTGTTTTGC 61.856 60.000 0.00 0.00 0.00 3.68
525 527 1.237285 CCTGGACGGAGGCTGTTTTG 61.237 60.000 0.00 0.00 33.16 2.44
526 528 1.073199 CCTGGACGGAGGCTGTTTT 59.927 57.895 0.00 0.00 33.16 2.43
527 529 2.113243 GACCTGGACGGAGGCTGTTT 62.113 60.000 0.00 0.00 36.46 2.83
528 530 2.526873 ACCTGGACGGAGGCTGTT 60.527 61.111 0.00 0.00 36.46 3.16
529 531 2.997897 GACCTGGACGGAGGCTGT 60.998 66.667 0.00 0.00 36.46 4.40
530 532 3.775654 GGACCTGGACGGAGGCTG 61.776 72.222 0.00 0.00 36.46 4.85
531 533 4.316823 TGGACCTGGACGGAGGCT 62.317 66.667 0.00 0.00 36.46 4.58
532 534 3.775654 CTGGACCTGGACGGAGGC 61.776 72.222 0.00 0.00 36.46 4.70
533 535 3.775654 GCTGGACCTGGACGGAGG 61.776 72.222 0.00 0.00 39.28 4.30
534 536 3.775654 GGCTGGACCTGGACGGAG 61.776 72.222 0.00 0.00 36.31 4.63
582 584 2.236382 CGGCGCTGAGAGAGAATGC 61.236 63.158 11.90 0.00 0.00 3.56
621 623 0.684153 CGGCTGGATGGGATTTTGGT 60.684 55.000 0.00 0.00 0.00 3.67
647 649 1.549170 CTTAGTCTTAGGTGGTGGCGT 59.451 52.381 0.00 0.00 0.00 5.68
660 662 1.361543 TGGGTGGTAGCCTCTTAGTCT 59.638 52.381 0.00 0.00 36.53 3.24
661 663 1.481363 GTGGGTGGTAGCCTCTTAGTC 59.519 57.143 0.00 0.00 36.53 2.59
664 666 0.974010 CGGTGGGTGGTAGCCTCTTA 60.974 60.000 0.00 0.00 36.53 2.10
665 667 2.291043 CGGTGGGTGGTAGCCTCTT 61.291 63.158 0.00 0.00 36.53 2.85
667 669 3.782443 CCGGTGGGTGGTAGCCTC 61.782 72.222 0.00 0.00 36.53 4.70
691 809 1.227147 TAGTAGCCATTGTCGCCGC 60.227 57.895 0.00 0.00 0.00 6.53
712 830 0.742635 GGAGGAAGAAGGCGCTCTTG 60.743 60.000 15.80 0.00 35.76 3.02
713 831 0.907230 AGGAGGAAGAAGGCGCTCTT 60.907 55.000 11.33 11.33 38.39 2.85
737 858 1.290324 GAGTCGAGGCAGCTTCACA 59.710 57.895 5.23 0.00 0.00 3.58
820 945 0.458716 GAGGAGGAAGAAAGCGTCGG 60.459 60.000 0.00 0.00 0.00 4.79
924 1111 7.254151 GCGGAAGAAGAGTGAATAGTATGAAAC 60.254 40.741 0.00 0.00 0.00 2.78
1078 1265 1.004745 GACAAGGATCTTGGGCAGGAA 59.995 52.381 11.65 0.00 0.00 3.36
1111 1298 0.674581 TGGAGCTTCTTGGATGCGTG 60.675 55.000 0.00 0.00 37.70 5.34
1299 1486 1.416813 GCACGATCTTCTCCTGTGCG 61.417 60.000 4.28 0.00 45.26 5.34
1302 1489 0.453793 CGAGCACGATCTTCTCCTGT 59.546 55.000 0.00 0.00 42.66 4.00
1367 1561 0.959372 AATCCAGACACAGCTGCTGC 60.959 55.000 28.39 13.16 34.37 5.25
1414 1699 1.299648 GCACCCACTGCAGTATCCA 59.700 57.895 21.20 0.00 46.29 3.41
1430 1715 0.755079 CCAGGAGATGATCTTCCGCA 59.245 55.000 0.00 0.00 0.00 5.69
1441 1726 0.105760 AGCCATCGAGACCAGGAGAT 60.106 55.000 0.00 0.00 0.00 2.75
1442 1727 0.753479 GAGCCATCGAGACCAGGAGA 60.753 60.000 0.00 0.00 0.00 3.71
1451 1736 0.312416 CCTTCGTAGGAGCCATCGAG 59.688 60.000 0.98 0.00 45.05 4.04
1454 1739 1.069935 GGCCTTCGTAGGAGCCATC 59.930 63.158 12.94 0.00 45.05 3.51
1467 1752 0.034670 GAAGTGCATCCTCTGGCCTT 60.035 55.000 3.32 0.00 0.00 4.35
1495 2017 1.418334 CCCGATGAGGATTCTGAGGT 58.582 55.000 0.00 0.00 45.00 3.85
1503 2025 2.072487 CCACCACCCCGATGAGGAT 61.072 63.158 0.00 0.00 45.00 3.24
1509 2031 3.083997 GAGAGCCACCACCCCGAT 61.084 66.667 0.00 0.00 0.00 4.18
1516 2038 0.535780 CACAAGCAAGAGAGCCACCA 60.536 55.000 0.00 0.00 34.23 4.17
1560 2082 5.055144 CAGCTGTATAGTGATGAAGCACAT 58.945 41.667 5.25 0.00 41.19 3.21
1564 2086 4.065321 ACCAGCTGTATAGTGATGAAGC 57.935 45.455 13.81 0.00 0.00 3.86
1565 2087 5.694006 GCTAACCAGCTGTATAGTGATGAAG 59.306 44.000 13.81 0.00 44.93 3.02
1567 2089 5.201713 GCTAACCAGCTGTATAGTGATGA 57.798 43.478 13.81 0.00 44.93 2.92
1589 2114 0.524862 GGCAGCCTCAAACACATGAG 59.475 55.000 3.29 0.00 45.19 2.90
1650 2175 6.307776 TGAAATTGGGTGTACCTGACATTTA 58.692 36.000 0.44 0.00 41.14 1.40
1690 2215 5.296283 ACAGAGTGCATATGAAATGAAGAGC 59.704 40.000 6.97 0.00 0.00 4.09
1711 2424 3.679980 AGAGCGCTTTAACATGTACACAG 59.320 43.478 13.26 0.00 0.00 3.66
1713 2426 3.927142 AGAGAGCGCTTTAACATGTACAC 59.073 43.478 13.26 0.00 0.00 2.90
1723 2436 8.542497 TTTTTACAAATCTAGAGAGCGCTTTA 57.458 30.769 13.26 4.12 0.00 1.85
1799 2516 4.567747 GCCCCCACACCATAAATATAGGAG 60.568 50.000 0.00 0.00 0.00 3.69
1800 2517 3.332485 GCCCCCACACCATAAATATAGGA 59.668 47.826 0.00 0.00 0.00 2.94
1801 2518 3.075283 TGCCCCCACACCATAAATATAGG 59.925 47.826 0.00 0.00 0.00 2.57
1803 2520 4.816048 TTGCCCCCACACCATAAATATA 57.184 40.909 0.00 0.00 0.00 0.86
1806 2523 1.905894 GTTTGCCCCCACACCATAAAT 59.094 47.619 0.00 0.00 0.00 1.40
1809 2526 0.411452 ATGTTTGCCCCCACACCATA 59.589 50.000 0.00 0.00 0.00 2.74
1810 2527 1.158227 ATGTTTGCCCCCACACCAT 59.842 52.632 0.00 0.00 0.00 3.55
1811 2528 1.836158 CATGTTTGCCCCCACACCA 60.836 57.895 0.00 0.00 0.00 4.17
1814 2531 1.112315 GTGACATGTTTGCCCCCACA 61.112 55.000 0.00 0.00 0.00 4.17
1815 2532 1.665442 GTGACATGTTTGCCCCCAC 59.335 57.895 0.00 0.00 0.00 4.61
1821 2539 2.760092 ACATATGGGGTGACATGTTTGC 59.240 45.455 7.80 0.00 32.39 3.68
1833 2594 0.796312 GAACGCGCATACATATGGGG 59.204 55.000 5.73 9.35 44.11 4.96
1835 2596 3.600717 TTTGAACGCGCATACATATGG 57.399 42.857 5.73 0.00 34.32 2.74
1898 2659 9.350357 GTGTGAAACGAGAGAATTAGTATTACA 57.650 33.333 0.00 0.00 42.39 2.41
1899 2660 8.805688 GGTGTGAAACGAGAGAATTAGTATTAC 58.194 37.037 0.00 0.00 42.39 1.89
1900 2661 8.525316 TGGTGTGAAACGAGAGAATTAGTATTA 58.475 33.333 0.00 0.00 42.39 0.98
1901 2662 7.383687 TGGTGTGAAACGAGAGAATTAGTATT 58.616 34.615 0.00 0.00 42.39 1.89
1908 2669 4.021104 TCTGATGGTGTGAAACGAGAGAAT 60.021 41.667 0.00 0.00 42.39 2.40
1910 2671 2.890945 TCTGATGGTGTGAAACGAGAGA 59.109 45.455 0.00 0.00 42.39 3.10
1912 2673 2.628178 AGTCTGATGGTGTGAAACGAGA 59.372 45.455 0.00 0.00 42.39 4.04
1913 2674 3.032017 AGTCTGATGGTGTGAAACGAG 57.968 47.619 0.00 0.00 42.39 4.18
1914 2675 3.130633 CAAGTCTGATGGTGTGAAACGA 58.869 45.455 0.00 0.00 42.39 3.85
1918 2679 6.295249 TCAAATACAAGTCTGATGGTGTGAA 58.705 36.000 2.31 0.00 0.00 3.18
1922 2683 5.473162 TGGTTCAAATACAAGTCTGATGGTG 59.527 40.000 0.00 0.00 0.00 4.17
1924 2685 6.573664 TTGGTTCAAATACAAGTCTGATGG 57.426 37.500 0.00 0.00 0.00 3.51
1925 2686 8.918658 CATTTTGGTTCAAATACAAGTCTGATG 58.081 33.333 0.00 0.00 33.19 3.07
1926 2687 8.090214 CCATTTTGGTTCAAATACAAGTCTGAT 58.910 33.333 0.00 0.00 33.19 2.90
1961 3237 5.733226 AATCGTGCATGTTCATTTATCGA 57.267 34.783 5.68 0.00 0.00 3.59
2003 3311 2.930950 GCCATGGCCTTGTAGAATGTA 58.069 47.619 27.24 0.00 34.56 2.29
2004 3312 1.767759 GCCATGGCCTTGTAGAATGT 58.232 50.000 27.24 0.00 34.56 2.71
2093 3738 7.775120 ACAAAGATCATTGACAGAACAAAACT 58.225 30.769 17.08 0.00 34.38 2.66
2097 3742 9.725019 ATACTACAAAGATCATTGACAGAACAA 57.275 29.630 17.08 0.00 34.38 2.83
2101 3746 9.725019 AACAATACTACAAAGATCATTGACAGA 57.275 29.630 17.08 0.99 34.38 3.41
2113 3791 7.023575 GGACATGCAGAAACAATACTACAAAG 58.976 38.462 0.00 0.00 0.00 2.77
2120 3798 5.575957 CAGATGGACATGCAGAAACAATAC 58.424 41.667 0.00 0.00 0.00 1.89
2122 3800 3.119245 GCAGATGGACATGCAGAAACAAT 60.119 43.478 0.00 0.00 42.11 2.71
2125 3803 1.133790 GGCAGATGGACATGCAGAAAC 59.866 52.381 0.00 0.00 44.37 2.78
2141 3819 3.132925 CAGGTGGAACAAAAATTGGCAG 58.867 45.455 0.00 0.00 44.16 4.85
2161 3842 2.483877 GCCGAACAAATGAGATGTCACA 59.516 45.455 0.00 0.00 34.75 3.58
2166 3847 7.041848 TGACTATAATGCCGAACAAATGAGATG 60.042 37.037 0.00 0.00 0.00 2.90
2232 3916 7.067859 CCTGGAAGAAGCAAAATATCAGATGAA 59.932 37.037 0.00 0.00 34.07 2.57
2392 4076 4.576053 GCAATATCATCTGGTGTGCTGTTA 59.424 41.667 0.00 0.00 0.00 2.41
2439 4123 2.880890 CTCCTGTGTTTGTTAGCAGCTT 59.119 45.455 0.00 0.00 0.00 3.74
2453 4137 6.029346 ACCAATTCTAATTTTGCTCCTGTG 57.971 37.500 0.00 0.00 0.00 3.66
2472 4156 5.045432 CCAAATACCTTACAGGGACTACCAA 60.045 44.000 0.00 0.00 40.58 3.67
2475 4159 5.668471 GACCAAATACCTTACAGGGACTAC 58.332 45.833 0.00 0.00 40.58 2.73
2479 4163 3.443052 TCGACCAAATACCTTACAGGGA 58.557 45.455 0.00 0.00 40.58 4.20
2480 4164 3.449737 TCTCGACCAAATACCTTACAGGG 59.550 47.826 0.00 0.00 40.58 4.45
2482 4166 5.578005 TCTCTCGACCAAATACCTTACAG 57.422 43.478 0.00 0.00 0.00 2.74
2483 4167 5.479375 ACTTCTCTCGACCAAATACCTTACA 59.521 40.000 0.00 0.00 0.00 2.41
2504 4188 9.507280 CTTTTTCATTATATCATCACGCAACTT 57.493 29.630 0.00 0.00 0.00 2.66
2526 4210 2.301870 TGTGGTATCTCACGGAGCTTTT 59.698 45.455 0.00 0.00 40.31 2.27
2609 4293 1.203087 TGTAGTCTTTCCGGACCCTGA 60.203 52.381 1.83 0.00 36.95 3.86
2620 4304 9.935682 CGAATATATTGTGCAAATGTAGTCTTT 57.064 29.630 1.78 4.50 0.00 2.52
2671 4355 8.298854 CACATGATGGTATCAAAAAGTTTCTCA 58.701 33.333 0.00 0.00 43.50 3.27
2761 4451 7.926555 TCCGAAATATTGGAGTGTCTATCTTTC 59.073 37.037 0.00 0.00 33.90 2.62
2806 4496 6.778821 TCCACTCAATGATTCCTTCAACTTA 58.221 36.000 0.00 0.00 38.03 2.24
2845 4535 7.018769 TCTTCACCCAGAGATCATCCAATATA 58.981 38.462 0.00 0.00 0.00 0.86
2891 4581 6.157645 ACATTGAGTGGAGAGATTAGTTCCAT 59.842 38.462 0.00 0.00 42.54 3.41
3049 4739 4.822896 ACGGCAATACTTTTACCACTCAAA 59.177 37.500 0.00 0.00 0.00 2.69
3082 4778 3.990959 ATCTCTCTCCCAACTTGTTCC 57.009 47.619 0.00 0.00 0.00 3.62
3278 4974 5.659463 TCGGGGAAAAATATTGCAGAATTG 58.341 37.500 0.00 0.00 0.00 2.32
3305 5001 4.608948 ACTCATCCTTTCTCAACTTCGT 57.391 40.909 0.00 0.00 0.00 3.85
3367 5063 0.877071 CCATGTCCTCTGTTGCACAC 59.123 55.000 0.00 0.00 0.00 3.82
3419 5115 4.278919 TGCTTGAAGAAATGAGCATGACAA 59.721 37.500 0.00 0.00 39.97 3.18
3552 5284 1.079490 TCCATCCTTCTCCTCTGTGGT 59.921 52.381 0.00 0.00 37.07 4.16
3709 5447 8.846943 TGCATATACTCTCAAAGACTTTTTCA 57.153 30.769 0.00 0.00 0.00 2.69
3801 5957 2.721425 TGGGACCGAGAACTTTTTGT 57.279 45.000 0.00 0.00 0.00 2.83
3907 6066 5.198965 AGCAGCTGGATATGATGAAGTTTT 58.801 37.500 17.12 0.00 0.00 2.43
3916 6075 7.739825 AGTAAAAATCTAGCAGCTGGATATGA 58.260 34.615 20.75 4.78 30.53 2.15
3945 6104 5.278414 GCAAAGGGGAATTCCAACATTTTTG 60.278 40.000 25.67 21.63 37.91 2.44
3946 6105 4.826733 GCAAAGGGGAATTCCAACATTTTT 59.173 37.500 25.67 12.46 37.91 1.94
4155 6337 4.953940 AGAGCTTCCTCCTTGCTATTAG 57.046 45.455 0.00 0.00 38.96 1.73
4159 6341 2.540383 TCAAGAGCTTCCTCCTTGCTA 58.460 47.619 7.13 0.00 38.96 3.49
4460 6673 1.541588 GAACCAAATCTGGAGCACACC 59.458 52.381 0.00 0.00 46.92 4.16
4479 6692 0.252239 TAAGGAGTCCCAGCTGCAGA 60.252 55.000 20.43 4.16 33.88 4.26
4691 6914 1.466167 CTTGCTGGATCACCGAAACTG 59.534 52.381 0.00 0.00 39.42 3.16
4693 6916 1.523758 ACTTGCTGGATCACCGAAAC 58.476 50.000 0.00 0.00 39.42 2.78
4865 7105 2.621338 TGATTCAAGACCATCAGACGC 58.379 47.619 0.00 0.00 0.00 5.19
4915 7161 3.006752 GGGCATTTCAAATGTCCTTCACA 59.993 43.478 24.24 0.00 40.49 3.58
4932 7178 2.282391 TGCAGTTTCGCTGGGCAT 60.282 55.556 0.00 0.00 45.14 4.40
4933 7179 2.979676 CTGCAGTTTCGCTGGGCA 60.980 61.111 5.25 0.00 45.14 5.36
4934 7180 3.741476 CCTGCAGTTTCGCTGGGC 61.741 66.667 13.81 0.00 44.78 5.36
4938 7184 1.448540 CCGATCCTGCAGTTTCGCT 60.449 57.895 23.01 0.00 0.00 4.93
4939 7185 1.424493 CTCCGATCCTGCAGTTTCGC 61.424 60.000 23.01 5.02 0.00 4.70
4940 7186 0.108615 ACTCCGATCCTGCAGTTTCG 60.109 55.000 21.99 21.99 0.00 3.46
4941 7187 2.003301 GAACTCCGATCCTGCAGTTTC 58.997 52.381 13.81 7.97 0.00 2.78
4942 7188 1.339151 GGAACTCCGATCCTGCAGTTT 60.339 52.381 13.81 0.00 33.98 2.66
4943 7189 0.250513 GGAACTCCGATCCTGCAGTT 59.749 55.000 13.81 0.00 33.98 3.16
4944 7190 1.617947 GGGAACTCCGATCCTGCAGT 61.618 60.000 13.81 0.00 37.14 4.40
4945 7191 1.144936 GGGAACTCCGATCCTGCAG 59.855 63.158 6.78 6.78 37.14 4.41
4946 7192 1.612146 TGGGAACTCCGATCCTGCA 60.612 57.895 0.00 0.00 38.76 4.41
4947 7193 1.144936 CTGGGAACTCCGATCCTGC 59.855 63.158 0.00 0.00 38.76 4.85
4948 7194 1.069823 CATCTGGGAACTCCGATCCTG 59.930 57.143 0.00 0.00 38.76 3.86
4949 7195 1.418334 CATCTGGGAACTCCGATCCT 58.582 55.000 0.00 0.00 38.76 3.24
4950 7196 0.394565 CCATCTGGGAACTCCGATCC 59.605 60.000 0.00 0.00 40.01 3.36
4951 7197 1.123928 ACCATCTGGGAACTCCGATC 58.876 55.000 0.54 0.00 41.15 3.69
4952 7198 0.833287 CACCATCTGGGAACTCCGAT 59.167 55.000 0.54 0.00 41.15 4.18
4953 7199 0.252057 TCACCATCTGGGAACTCCGA 60.252 55.000 0.54 0.00 41.15 4.55
4954 7200 0.833287 ATCACCATCTGGGAACTCCG 59.167 55.000 0.54 0.00 41.15 4.63
4955 7201 1.839994 TCATCACCATCTGGGAACTCC 59.160 52.381 0.54 0.00 41.15 3.85
4956 7202 3.474600 CATCATCACCATCTGGGAACTC 58.525 50.000 0.54 0.00 41.15 3.01
4957 7203 2.174210 CCATCATCACCATCTGGGAACT 59.826 50.000 0.54 0.00 41.15 3.01
4958 7204 2.579873 CCATCATCACCATCTGGGAAC 58.420 52.381 0.54 0.00 41.15 3.62
4961 7207 3.739703 CCCATCATCACCATCTGGG 57.260 57.895 0.54 0.00 40.59 4.45
4962 7208 1.213678 ACACCCATCATCACCATCTGG 59.786 52.381 0.00 0.00 42.17 3.86
4963 7209 2.723322 ACACCCATCATCACCATCTG 57.277 50.000 0.00 0.00 0.00 2.90
4964 7210 4.860802 TTAACACCCATCATCACCATCT 57.139 40.909 0.00 0.00 0.00 2.90
4965 7211 5.418840 AGTTTTAACACCCATCATCACCATC 59.581 40.000 0.00 0.00 0.00 3.51
4966 7212 5.332743 AGTTTTAACACCCATCATCACCAT 58.667 37.500 0.00 0.00 0.00 3.55
4967 7213 4.735369 AGTTTTAACACCCATCATCACCA 58.265 39.130 0.00 0.00 0.00 4.17
4968 7214 5.010282 AGAGTTTTAACACCCATCATCACC 58.990 41.667 0.00 0.00 0.00 4.02
4969 7215 6.575162 AAGAGTTTTAACACCCATCATCAC 57.425 37.500 0.00 0.00 0.00 3.06
4970 7216 7.458397 AGTAAGAGTTTTAACACCCATCATCA 58.542 34.615 0.00 0.00 0.00 3.07
4971 7217 7.923414 AGTAAGAGTTTTAACACCCATCATC 57.077 36.000 0.00 0.00 0.00 2.92
4972 7218 7.553044 GCTAGTAAGAGTTTTAACACCCATCAT 59.447 37.037 0.00 0.00 0.00 2.45
4973 7219 6.877322 GCTAGTAAGAGTTTTAACACCCATCA 59.123 38.462 0.00 0.00 0.00 3.07
4974 7220 6.877322 TGCTAGTAAGAGTTTTAACACCCATC 59.123 38.462 0.00 0.00 0.00 3.51
4975 7221 6.775708 TGCTAGTAAGAGTTTTAACACCCAT 58.224 36.000 0.00 0.00 0.00 4.00
4976 7222 6.177310 TGCTAGTAAGAGTTTTAACACCCA 57.823 37.500 0.00 0.00 0.00 4.51
4977 7223 6.228995 ACTGCTAGTAAGAGTTTTAACACCC 58.771 40.000 2.05 0.00 0.00 4.61
4978 7224 7.725818 AACTGCTAGTAAGAGTTTTAACACC 57.274 36.000 2.05 0.00 0.00 4.16
4979 7225 7.586664 GCAAACTGCTAGTAAGAGTTTTAACAC 59.413 37.037 0.00 0.00 40.96 3.32
4980 7226 7.636326 GCAAACTGCTAGTAAGAGTTTTAACA 58.364 34.615 0.00 0.00 40.96 2.41
4997 7243 0.746659 AACCACAGGAAGCAAACTGC 59.253 50.000 2.03 0.00 45.46 4.40
4998 7244 2.166254 ACAAACCACAGGAAGCAAACTG 59.834 45.455 0.00 0.00 40.48 3.16
4999 7245 2.166254 CACAAACCACAGGAAGCAAACT 59.834 45.455 0.00 0.00 0.00 2.66
5000 7246 2.165437 TCACAAACCACAGGAAGCAAAC 59.835 45.455 0.00 0.00 0.00 2.93
5001 7247 2.451490 TCACAAACCACAGGAAGCAAA 58.549 42.857 0.00 0.00 0.00 3.68
5002 7248 2.136298 TCACAAACCACAGGAAGCAA 57.864 45.000 0.00 0.00 0.00 3.91
5003 7249 1.955778 CATCACAAACCACAGGAAGCA 59.044 47.619 0.00 0.00 0.00 3.91
5004 7250 2.229792 TCATCACAAACCACAGGAAGC 58.770 47.619 0.00 0.00 0.00 3.86
5005 7251 4.396166 GGTATCATCACAAACCACAGGAAG 59.604 45.833 0.00 0.00 32.04 3.46
5006 7252 4.202514 TGGTATCATCACAAACCACAGGAA 60.203 41.667 0.00 0.00 37.09 3.36
5007 7253 3.329225 TGGTATCATCACAAACCACAGGA 59.671 43.478 0.00 0.00 37.09 3.86
5008 7254 3.684908 TGGTATCATCACAAACCACAGG 58.315 45.455 0.00 0.00 37.09 4.00
5009 7255 4.156556 CCTTGGTATCATCACAAACCACAG 59.843 45.833 0.00 0.00 41.58 3.66
5010 7256 4.078537 CCTTGGTATCATCACAAACCACA 58.921 43.478 0.00 0.00 41.58 4.17
5011 7257 4.331968 TCCTTGGTATCATCACAAACCAC 58.668 43.478 0.00 0.00 41.58 4.16
5012 7258 4.649267 TCCTTGGTATCATCACAAACCA 57.351 40.909 0.00 0.00 40.19 3.67
5013 7259 6.147821 CGATATCCTTGGTATCATCACAAACC 59.852 42.308 0.00 0.00 0.00 3.27
5014 7260 6.706270 ACGATATCCTTGGTATCATCACAAAC 59.294 38.462 0.00 0.00 0.00 2.93
5015 7261 6.826668 ACGATATCCTTGGTATCATCACAAA 58.173 36.000 0.00 0.00 0.00 2.83
5016 7262 6.267699 AGACGATATCCTTGGTATCATCACAA 59.732 38.462 0.00 0.00 0.00 3.33
5017 7263 5.775195 AGACGATATCCTTGGTATCATCACA 59.225 40.000 0.00 0.00 0.00 3.58
5018 7264 6.096036 CAGACGATATCCTTGGTATCATCAC 58.904 44.000 0.00 0.00 0.00 3.06
5019 7265 5.775195 ACAGACGATATCCTTGGTATCATCA 59.225 40.000 0.00 0.00 0.00 3.07
5020 7266 6.274157 ACAGACGATATCCTTGGTATCATC 57.726 41.667 0.00 0.00 0.00 2.92
5021 7267 6.672266 AACAGACGATATCCTTGGTATCAT 57.328 37.500 0.00 0.00 0.00 2.45
5022 7268 6.479972 AAACAGACGATATCCTTGGTATCA 57.520 37.500 0.00 0.00 0.00 2.15
5025 7271 9.139734 ACTATAAAACAGACGATATCCTTGGTA 57.860 33.333 0.00 0.00 0.00 3.25
5026 7272 8.019656 ACTATAAAACAGACGATATCCTTGGT 57.980 34.615 0.00 0.00 0.00 3.67
5027 7273 9.976511 TTACTATAAAACAGACGATATCCTTGG 57.023 33.333 0.00 0.00 0.00 3.61
5036 7282 9.454585 CCGACATTATTACTATAAAACAGACGA 57.545 33.333 0.00 0.00 30.38 4.20
5037 7283 9.241317 ACCGACATTATTACTATAAAACAGACG 57.759 33.333 0.00 0.00 30.38 4.18
5047 7293 8.790718 CAGTGGTACTACCGACATTATTACTAT 58.209 37.037 5.65 0.00 42.58 2.12
5048 7294 7.255242 GCAGTGGTACTACCGACATTATTACTA 60.255 40.741 5.65 0.00 42.58 1.82
5049 7295 6.460676 GCAGTGGTACTACCGACATTATTACT 60.461 42.308 5.65 0.00 42.58 2.24
5050 7296 5.689068 GCAGTGGTACTACCGACATTATTAC 59.311 44.000 5.65 0.00 42.58 1.89
5051 7297 5.221303 GGCAGTGGTACTACCGACATTATTA 60.221 44.000 5.65 0.00 42.58 0.98
5052 7298 4.442472 GGCAGTGGTACTACCGACATTATT 60.442 45.833 5.65 0.00 42.58 1.40
5053 7299 3.069158 GGCAGTGGTACTACCGACATTAT 59.931 47.826 5.65 0.00 42.58 1.28
5054 7300 2.428171 GGCAGTGGTACTACCGACATTA 59.572 50.000 5.65 0.00 42.58 1.90
5055 7301 1.206371 GGCAGTGGTACTACCGACATT 59.794 52.381 5.65 0.00 42.58 2.71
5056 7302 0.822164 GGCAGTGGTACTACCGACAT 59.178 55.000 5.65 0.00 42.58 3.06
5057 7303 0.251474 AGGCAGTGGTACTACCGACA 60.251 55.000 5.65 0.00 42.58 4.35
5058 7304 0.172803 CAGGCAGTGGTACTACCGAC 59.827 60.000 5.65 0.00 42.58 4.79
5059 7305 0.968901 CCAGGCAGTGGTACTACCGA 60.969 60.000 5.65 0.00 42.58 4.69
5060 7306 1.515954 CCAGGCAGTGGTACTACCG 59.484 63.158 5.65 0.00 42.58 4.02
5069 7315 3.624777 AGTAAATCCAATCCAGGCAGTG 58.375 45.455 0.00 0.00 0.00 3.66
5070 7316 4.475016 ACTAGTAAATCCAATCCAGGCAGT 59.525 41.667 0.00 0.00 0.00 4.40
5071 7317 5.041191 ACTAGTAAATCCAATCCAGGCAG 57.959 43.478 0.00 0.00 0.00 4.85
5072 7318 6.569127 TTACTAGTAAATCCAATCCAGGCA 57.431 37.500 12.99 0.00 0.00 4.75
5073 7319 9.740710 ATATTTACTAGTAAATCCAATCCAGGC 57.259 33.333 33.68 0.00 42.75 4.85
5076 7322 9.515226 GGCATATTTACTAGTAAATCCAATCCA 57.485 33.333 33.68 20.30 42.75 3.41
5077 7323 8.957466 GGGCATATTTACTAGTAAATCCAATCC 58.043 37.037 33.68 26.59 42.75 3.01
5078 7324 8.665685 CGGGCATATTTACTAGTAAATCCAATC 58.334 37.037 33.68 22.71 42.75 2.67
5079 7325 8.161425 ACGGGCATATTTACTAGTAAATCCAAT 58.839 33.333 33.68 22.99 42.75 3.16
5080 7326 7.442969 CACGGGCATATTTACTAGTAAATCCAA 59.557 37.037 33.68 22.04 42.75 3.53
5081 7327 6.932400 CACGGGCATATTTACTAGTAAATCCA 59.068 38.462 33.68 22.62 42.75 3.41
5082 7328 6.128363 GCACGGGCATATTTACTAGTAAATCC 60.128 42.308 33.68 28.30 40.86 3.01
5083 7329 6.400727 CGCACGGGCATATTTACTAGTAAATC 60.401 42.308 33.68 23.06 41.03 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.