Multiple sequence alignment - TraesCS1B01G001600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G001600 chr1B 100.000 4650 0 0 1 4650 1423382 1418733 0.000000e+00 8588.0
1 TraesCS1B01G001600 chr1B 78.105 306 30 15 123 401 1478222 1478517 4.820000e-35 159.0
2 TraesCS1B01G001600 chr1D 87.418 1828 141 52 2805 4597 2114286 2112513 0.000000e+00 2019.0
3 TraesCS1B01G001600 chr1D 86.900 1229 99 33 1576 2767 2115607 2114404 0.000000e+00 1321.0
4 TraesCS1B01G001600 chr1D 83.231 650 51 22 1 623 2117110 2116492 1.140000e-150 544.0
5 TraesCS1B01G001600 chr1D 89.362 94 6 2 994 1087 2116313 2116224 1.060000e-21 115.0
6 TraesCS1B01G001600 chr1A 89.539 1453 90 27 2805 4204 1211062 1209619 0.000000e+00 1784.0
7 TraesCS1B01G001600 chr1A 86.659 862 71 25 1571 2428 1212372 1211551 0.000000e+00 915.0
8 TraesCS1B01G001600 chr1A 92.138 407 21 6 4246 4650 1209514 1209117 8.730000e-157 564.0
9 TraesCS1B01G001600 chr1A 93.069 303 17 2 2508 2809 1211416 1211117 1.540000e-119 440.0
10 TraesCS1B01G001600 chr1A 87.582 306 15 8 1234 1521 1212760 1212460 2.680000e-87 333.0
11 TraesCS1B01G001600 chr1A 86.432 199 21 4 745 943 49289970 49290162 3.640000e-51 213.0
12 TraesCS1B01G001600 chr1A 91.111 90 6 2 994 1081 1213049 1212960 2.270000e-23 121.0
13 TraesCS1B01G001600 chr1A 95.556 45 1 1 2449 2493 1211506 1211463 2.320000e-08 71.3
14 TraesCS1B01G001600 chr7D 93.258 178 12 0 751 928 121948555 121948732 3.570000e-66 263.0
15 TraesCS1B01G001600 chr3D 90.769 195 18 0 745 939 606311946 606312140 1.280000e-65 261.0
16 TraesCS1B01G001600 chr2D 87.440 207 24 2 738 944 595206100 595206304 2.160000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G001600 chr1B 1418733 1423382 4649 True 8588.000000 8588 100.000000 1 4650 1 chr1B.!!$R1 4649
1 TraesCS1B01G001600 chr1D 2112513 2117110 4597 True 999.750000 2019 86.727750 1 4597 4 chr1D.!!$R1 4596
2 TraesCS1B01G001600 chr1A 1209117 1213049 3932 True 604.042857 1784 90.807714 994 4650 7 chr1A.!!$R1 3656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 677 0.034089 AGTTAGGCACCATCCCTTGC 60.034 55.0 0.00 0.0 38.06 4.01 F
1214 1319 0.035881 CAGAGAAGCAGGCAAGTGGA 59.964 55.0 0.00 0.0 0.00 4.02 F
1216 1321 0.036022 GAGAAGCAGGCAAGTGGAGT 59.964 55.0 0.00 0.0 0.00 3.85 F
1217 1322 0.036022 AGAAGCAGGCAAGTGGAGTC 59.964 55.0 0.00 0.0 0.00 3.36 F
1788 2041 0.164002 GAACAAAGTCTTCGGCGCTC 59.836 55.0 7.64 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 2041 0.032678 AGCCGATATGCAGGAAGTCG 59.967 55.0 0.00 0.0 0.00 4.18 R
2186 2447 0.100861 GCAGTAGTAGCCCTGTCGTC 59.899 60.0 0.00 0.0 0.00 4.20 R
2845 3248 0.662619 TCAACTCTGCAAGCAAACCG 59.337 50.0 0.00 0.0 0.00 4.44 R
3178 3581 1.702182 TTTGCCTGCAGAATGTTGGA 58.298 45.0 17.39 0.0 39.31 3.53 R
3651 4062 0.034337 TAGGAACGTGAGGCCACAAC 59.966 55.0 3.76 0.0 43.34 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 5.895216 CAAACTTGCCACTCATTTCTTTC 57.105 39.130 0.00 0.00 0.00 2.62
139 144 9.868277 TGACAAACCTAATAAAATTGCAATAGG 57.132 29.630 18.18 18.18 36.75 2.57
155 160 1.154197 TAGGTACGAGATCCGCGATG 58.846 55.000 8.23 0.00 43.32 3.84
175 180 7.182361 CGATGAATATACACAGTTCATTGCT 57.818 36.000 1.88 0.00 41.30 3.91
186 191 7.362662 ACACAGTTCATTGCTAGTACAAAATG 58.637 34.615 0.00 0.00 32.27 2.32
189 194 8.721478 ACAGTTCATTGCTAGTACAAAATGTAG 58.279 33.333 0.00 0.00 32.84 2.74
191 196 9.672673 AGTTCATTGCTAGTACAAAATGTAGAT 57.327 29.630 0.00 0.00 32.84 1.98
253 263 8.877864 AGATCTTATCTATGACTAGTGGAAGG 57.122 38.462 0.00 0.00 38.00 3.46
258 268 6.926630 ATCTATGACTAGTGGAAGGGAATC 57.073 41.667 0.00 0.00 0.00 2.52
264 274 3.713764 ACTAGTGGAAGGGAATCTCATGG 59.286 47.826 0.00 0.00 0.00 3.66
273 283 6.466326 GGAAGGGAATCTCATGGATAATCACA 60.466 42.308 0.00 0.00 33.71 3.58
277 287 6.093219 GGGAATCTCATGGATAATCACATTCG 59.907 42.308 0.00 0.00 33.71 3.34
323 339 7.149973 GCATATGCATGAATTGACCAATACTT 58.850 34.615 22.84 0.00 41.59 2.24
324 340 8.298854 GCATATGCATGAATTGACCAATACTTA 58.701 33.333 22.84 0.00 41.59 2.24
342 363 3.378742 ACTTAGCTGACTGGTCGACTATG 59.621 47.826 16.46 8.34 0.00 2.23
344 365 1.103803 GCTGACTGGTCGACTATGGA 58.896 55.000 16.46 0.00 0.00 3.41
349 370 0.752658 CTGGTCGACTATGGATGGCA 59.247 55.000 16.46 0.21 0.00 4.92
350 371 0.464036 TGGTCGACTATGGATGGCAC 59.536 55.000 16.46 0.00 0.00 5.01
351 372 0.753262 GGTCGACTATGGATGGCACT 59.247 55.000 16.46 0.00 0.00 4.40
352 373 1.539065 GGTCGACTATGGATGGCACTG 60.539 57.143 16.46 0.00 0.00 3.66
354 375 0.105593 CGACTATGGATGGCACTGCT 59.894 55.000 0.00 0.00 0.00 4.24
356 377 2.224042 CGACTATGGATGGCACTGCTAA 60.224 50.000 0.00 0.00 0.00 3.09
357 378 3.134458 GACTATGGATGGCACTGCTAAC 58.866 50.000 0.00 0.00 0.00 2.34
358 379 2.505407 ACTATGGATGGCACTGCTAACA 59.495 45.455 0.00 0.00 0.00 2.41
359 380 2.742428 ATGGATGGCACTGCTAACAT 57.258 45.000 0.00 1.89 0.00 2.71
360 381 2.512692 TGGATGGCACTGCTAACATT 57.487 45.000 0.00 0.00 0.00 2.71
361 382 2.093890 TGGATGGCACTGCTAACATTG 58.906 47.619 0.00 0.00 0.00 2.82
362 383 2.290832 TGGATGGCACTGCTAACATTGA 60.291 45.455 0.00 0.00 0.00 2.57
363 384 2.098117 GGATGGCACTGCTAACATTGAC 59.902 50.000 0.00 0.00 35.09 3.18
364 385 2.268762 TGGCACTGCTAACATTGACA 57.731 45.000 0.00 0.00 41.81 3.58
365 386 2.153645 TGGCACTGCTAACATTGACAG 58.846 47.619 0.00 0.00 39.39 3.51
366 387 1.135575 GGCACTGCTAACATTGACAGC 60.136 52.381 0.00 7.13 34.66 4.40
368 389 2.030893 GCACTGCTAACATTGACAGCAA 60.031 45.455 14.64 0.00 44.21 3.91
369 390 3.818387 CACTGCTAACATTGACAGCAAG 58.182 45.455 14.64 11.84 44.21 4.01
370 391 3.251729 CACTGCTAACATTGACAGCAAGT 59.748 43.478 14.64 12.27 44.21 3.16
371 392 3.251729 ACTGCTAACATTGACAGCAAGTG 59.748 43.478 14.64 8.45 44.21 3.16
372 393 2.553602 TGCTAACATTGACAGCAAGTGG 59.446 45.455 12.40 0.00 42.09 4.00
378 399 1.388547 TTGACAGCAAGTGGTGGAAC 58.611 50.000 14.48 6.56 46.90 3.62
381 402 1.334869 GACAGCAAGTGGTGGAACAAG 59.665 52.381 14.48 0.00 46.90 3.16
393 414 2.032924 GTGGAACAAGGAAACGGTCAAG 59.967 50.000 0.00 0.00 44.16 3.02
403 424 4.019591 AGGAAACGGTCAAGTTATTAGCCT 60.020 41.667 0.00 0.00 33.41 4.58
453 474 0.172578 TGAAAGTGACGCCGATCGAT 59.827 50.000 18.66 0.00 41.67 3.59
454 475 0.847035 GAAAGTGACGCCGATCGATC 59.153 55.000 18.66 15.68 41.67 3.69
472 493 4.497473 GATCGATCGAGGAAGAAGATGT 57.503 45.455 23.84 1.18 0.00 3.06
473 494 4.865776 GATCGATCGAGGAAGAAGATGTT 58.134 43.478 23.84 0.96 0.00 2.71
474 495 4.720649 TCGATCGAGGAAGAAGATGTTT 57.279 40.909 15.15 0.00 0.00 2.83
513 534 2.019249 CTGCCATGGGTTACACATGAG 58.981 52.381 27.10 17.83 46.60 2.90
555 576 4.272489 CCCTTTCAATGGTCTATGCTTCA 58.728 43.478 0.00 0.00 0.00 3.02
556 577 4.891756 CCCTTTCAATGGTCTATGCTTCAT 59.108 41.667 0.00 0.00 0.00 2.57
557 578 5.361857 CCCTTTCAATGGTCTATGCTTCATT 59.638 40.000 0.00 0.00 0.00 2.57
558 579 6.270815 CCTTTCAATGGTCTATGCTTCATTG 58.729 40.000 8.16 8.16 44.41 2.82
559 580 4.906065 TCAATGGTCTATGCTTCATTGC 57.094 40.909 9.27 0.00 43.40 3.56
561 582 4.951715 TCAATGGTCTATGCTTCATTGCTT 59.048 37.500 9.27 0.00 43.40 3.91
562 583 5.066893 TCAATGGTCTATGCTTCATTGCTTC 59.933 40.000 9.27 0.00 43.40 3.86
564 585 3.943381 TGGTCTATGCTTCATTGCTTCTG 59.057 43.478 0.00 0.00 0.00 3.02
565 586 3.314635 GGTCTATGCTTCATTGCTTCTGG 59.685 47.826 0.00 0.00 0.00 3.86
566 587 4.194640 GTCTATGCTTCATTGCTTCTGGA 58.805 43.478 0.00 0.00 0.00 3.86
567 588 4.637534 GTCTATGCTTCATTGCTTCTGGAA 59.362 41.667 0.00 0.00 0.00 3.53
568 589 4.880120 TCTATGCTTCATTGCTTCTGGAAG 59.120 41.667 6.02 6.02 39.70 3.46
569 590 3.144657 TGCTTCATTGCTTCTGGAAGA 57.855 42.857 13.74 0.00 44.68 2.87
595 617 0.179048 TGCACGCCATATTGGAGGAG 60.179 55.000 0.00 0.00 41.96 3.69
602 624 2.224719 GCCATATTGGAGGAGCATGAGT 60.225 50.000 0.00 0.00 40.96 3.41
603 625 3.409570 CCATATTGGAGGAGCATGAGTG 58.590 50.000 0.00 0.00 40.96 3.51
606 628 1.059098 TTGGAGGAGCATGAGTGTGT 58.941 50.000 0.00 0.00 0.00 3.72
609 631 1.674221 GGAGGAGCATGAGTGTGTCAC 60.674 57.143 0.00 0.00 38.28 3.67
612 634 1.436600 GAGCATGAGTGTGTCACCAG 58.563 55.000 0.00 0.00 38.28 4.00
637 659 2.872028 GCACACAGCGAAAACCAAG 58.128 52.632 0.00 0.00 0.00 3.61
638 660 0.100503 GCACACAGCGAAAACCAAGT 59.899 50.000 0.00 0.00 0.00 3.16
639 661 1.469079 GCACACAGCGAAAACCAAGTT 60.469 47.619 0.00 0.00 0.00 2.66
640 662 2.223386 GCACACAGCGAAAACCAAGTTA 60.223 45.455 0.00 0.00 0.00 2.24
641 663 3.617669 CACACAGCGAAAACCAAGTTAG 58.382 45.455 0.00 0.00 0.00 2.34
642 664 2.616842 ACACAGCGAAAACCAAGTTAGG 59.383 45.455 0.00 0.00 0.00 2.69
643 665 1.607148 ACAGCGAAAACCAAGTTAGGC 59.393 47.619 0.00 0.00 0.00 3.93
644 666 1.606668 CAGCGAAAACCAAGTTAGGCA 59.393 47.619 0.00 0.00 0.00 4.75
645 667 1.607148 AGCGAAAACCAAGTTAGGCAC 59.393 47.619 0.00 0.00 0.00 5.01
646 668 1.335597 GCGAAAACCAAGTTAGGCACC 60.336 52.381 0.00 0.00 0.00 5.01
647 669 1.950909 CGAAAACCAAGTTAGGCACCA 59.049 47.619 0.00 0.00 0.00 4.17
648 670 2.556622 CGAAAACCAAGTTAGGCACCAT 59.443 45.455 0.00 0.00 0.00 3.55
649 671 3.365969 CGAAAACCAAGTTAGGCACCATC 60.366 47.826 0.00 0.00 0.00 3.51
650 672 2.215942 AACCAAGTTAGGCACCATCC 57.784 50.000 0.00 0.00 0.00 3.51
651 673 0.331616 ACCAAGTTAGGCACCATCCC 59.668 55.000 0.00 0.00 0.00 3.85
652 674 0.625849 CCAAGTTAGGCACCATCCCT 59.374 55.000 0.00 0.00 36.47 4.20
653 675 1.005924 CCAAGTTAGGCACCATCCCTT 59.994 52.381 0.00 0.00 33.88 3.95
654 676 2.094675 CAAGTTAGGCACCATCCCTTG 58.905 52.381 0.00 0.00 33.88 3.61
655 677 0.034089 AGTTAGGCACCATCCCTTGC 60.034 55.000 0.00 0.00 38.06 4.01
656 678 0.034089 GTTAGGCACCATCCCTTGCT 60.034 55.000 0.00 0.00 38.85 3.91
657 679 1.211949 GTTAGGCACCATCCCTTGCTA 59.788 52.381 0.00 0.00 38.85 3.49
658 680 1.131638 TAGGCACCATCCCTTGCTAG 58.868 55.000 0.00 0.00 38.85 3.42
659 681 0.916358 AGGCACCATCCCTTGCTAGT 60.916 55.000 0.00 0.00 38.85 2.57
660 682 0.837272 GGCACCATCCCTTGCTAGTA 59.163 55.000 0.00 0.00 38.85 1.82
661 683 1.421646 GGCACCATCCCTTGCTAGTAT 59.578 52.381 0.00 0.00 38.85 2.12
662 684 2.158608 GGCACCATCCCTTGCTAGTATT 60.159 50.000 0.00 0.00 38.85 1.89
663 685 3.555966 GCACCATCCCTTGCTAGTATTT 58.444 45.455 0.00 0.00 35.74 1.40
664 686 3.954258 GCACCATCCCTTGCTAGTATTTT 59.046 43.478 0.00 0.00 35.74 1.82
665 687 4.202050 GCACCATCCCTTGCTAGTATTTTG 60.202 45.833 0.00 0.00 35.74 2.44
666 688 4.949856 CACCATCCCTTGCTAGTATTTTGT 59.050 41.667 0.00 0.00 0.00 2.83
667 689 5.418840 CACCATCCCTTGCTAGTATTTTGTT 59.581 40.000 0.00 0.00 0.00 2.83
668 690 5.652452 ACCATCCCTTGCTAGTATTTTGTTC 59.348 40.000 0.00 0.00 0.00 3.18
669 691 5.888161 CCATCCCTTGCTAGTATTTTGTTCT 59.112 40.000 0.00 0.00 0.00 3.01
670 692 7.054124 CCATCCCTTGCTAGTATTTTGTTCTA 58.946 38.462 0.00 0.00 0.00 2.10
671 693 7.012421 CCATCCCTTGCTAGTATTTTGTTCTAC 59.988 40.741 0.00 0.00 0.00 2.59
672 694 7.253905 TCCCTTGCTAGTATTTTGTTCTACT 57.746 36.000 0.00 0.00 33.02 2.57
673 695 7.686434 TCCCTTGCTAGTATTTTGTTCTACTT 58.314 34.615 0.00 0.00 30.98 2.24
674 696 7.606456 TCCCTTGCTAGTATTTTGTTCTACTTG 59.394 37.037 0.00 0.00 30.98 3.16
675 697 7.390718 CCCTTGCTAGTATTTTGTTCTACTTGT 59.609 37.037 0.00 0.00 30.98 3.16
676 698 8.784043 CCTTGCTAGTATTTTGTTCTACTTGTT 58.216 33.333 0.00 0.00 30.98 2.83
678 700 9.944663 TTGCTAGTATTTTGTTCTACTTGTTTG 57.055 29.630 0.00 0.00 30.98 2.93
679 701 9.116067 TGCTAGTATTTTGTTCTACTTGTTTGT 57.884 29.630 0.00 0.00 30.98 2.83
718 740 6.917217 ACTTTTACTGCTGATGAATAGAGC 57.083 37.500 0.00 0.00 0.00 4.09
720 742 6.881065 ACTTTTACTGCTGATGAATAGAGCAA 59.119 34.615 0.00 0.00 42.03 3.91
721 743 7.555554 ACTTTTACTGCTGATGAATAGAGCAAT 59.444 33.333 0.00 0.00 42.03 3.56
722 744 7.488187 TTTACTGCTGATGAATAGAGCAATC 57.512 36.000 0.00 0.00 42.03 2.67
723 745 5.032327 ACTGCTGATGAATAGAGCAATCA 57.968 39.130 0.00 0.00 42.03 2.57
724 746 5.434408 ACTGCTGATGAATAGAGCAATCAA 58.566 37.500 0.00 0.00 42.03 2.57
726 748 6.376299 ACTGCTGATGAATAGAGCAATCAAAA 59.624 34.615 0.00 0.00 42.03 2.44
727 749 7.094075 ACTGCTGATGAATAGAGCAATCAAAAA 60.094 33.333 0.00 0.00 42.03 1.94
729 751 8.255206 TGCTGATGAATAGAGCAATCAAAAATT 58.745 29.630 0.00 0.00 39.75 1.82
730 752 9.740239 GCTGATGAATAGAGCAATCAAAAATTA 57.260 29.630 0.00 0.00 32.70 1.40
753 775 8.740123 TTACTACAACAAAGAATTCTGGAACA 57.260 30.769 9.17 0.00 0.00 3.18
755 777 7.875971 ACTACAACAAAGAATTCTGGAACATC 58.124 34.615 9.17 0.00 38.20 3.06
756 778 6.713762 ACAACAAAGAATTCTGGAACATCA 57.286 33.333 9.17 0.00 38.20 3.07
757 779 6.507023 ACAACAAAGAATTCTGGAACATCAC 58.493 36.000 9.17 0.00 38.20 3.06
758 780 5.712152 ACAAAGAATTCTGGAACATCACC 57.288 39.130 9.17 0.00 38.20 4.02
759 781 5.388654 ACAAAGAATTCTGGAACATCACCT 58.611 37.500 9.17 0.00 38.20 4.00
760 782 5.474876 ACAAAGAATTCTGGAACATCACCTC 59.525 40.000 9.17 0.00 38.20 3.85
761 783 5.511386 AAGAATTCTGGAACATCACCTCT 57.489 39.130 9.17 0.00 38.20 3.69
762 784 4.841422 AGAATTCTGGAACATCACCTCTG 58.159 43.478 7.30 0.00 38.20 3.35
763 785 4.288105 AGAATTCTGGAACATCACCTCTGT 59.712 41.667 7.30 0.00 38.20 3.41
765 787 3.407424 TCTGGAACATCACCTCTGTTG 57.593 47.619 0.00 0.00 36.98 3.33
766 788 2.705658 TCTGGAACATCACCTCTGTTGT 59.294 45.455 0.00 0.00 36.98 3.32
771 793 4.455877 GGAACATCACCTCTGTTGTAAAGG 59.544 45.833 0.00 0.00 36.98 3.11
773 795 5.048846 ACATCACCTCTGTTGTAAAGGTT 57.951 39.130 0.00 0.00 41.48 3.50
774 796 5.445964 ACATCACCTCTGTTGTAAAGGTTT 58.554 37.500 0.00 0.00 41.48 3.27
775 797 5.891551 ACATCACCTCTGTTGTAAAGGTTTT 59.108 36.000 0.00 0.00 41.48 2.43
778 800 7.324354 TCACCTCTGTTGTAAAGGTTTTTAC 57.676 36.000 3.80 3.80 45.71 2.01
788 810 4.683501 AAAGGTTTTTACAACACGACGT 57.316 36.364 0.00 0.00 0.00 4.34
790 812 5.989551 AAGGTTTTTACAACACGACGTAT 57.010 34.783 0.00 0.00 0.00 3.06
792 814 4.810491 AGGTTTTTACAACACGACGTATGT 59.190 37.500 18.77 18.77 0.00 2.29
793 815 5.294060 AGGTTTTTACAACACGACGTATGTT 59.706 36.000 19.64 11.00 40.95 2.71
794 816 6.478344 AGGTTTTTACAACACGACGTATGTTA 59.522 34.615 19.64 10.98 38.22 2.41
795 817 6.787043 GGTTTTTACAACACGACGTATGTTAG 59.213 38.462 19.64 12.45 38.22 2.34
796 818 7.306515 GGTTTTTACAACACGACGTATGTTAGA 60.307 37.037 19.64 7.34 38.22 2.10
797 819 7.691430 TTTTACAACACGACGTATGTTAGAA 57.309 32.000 19.64 10.49 38.22 2.10
798 820 7.691430 TTTACAACACGACGTATGTTAGAAA 57.309 32.000 19.64 14.46 38.22 2.52
799 821 7.872163 TTACAACACGACGTATGTTAGAAAT 57.128 32.000 19.64 4.65 38.22 2.17
800 822 6.148270 ACAACACGACGTATGTTAGAAATG 57.852 37.500 15.25 7.42 38.22 2.32
801 823 5.693104 ACAACACGACGTATGTTAGAAATGT 59.307 36.000 15.25 7.94 38.22 2.71
802 824 6.201425 ACAACACGACGTATGTTAGAAATGTT 59.799 34.615 15.25 0.55 38.22 2.71
803 825 6.774354 ACACGACGTATGTTAGAAATGTTT 57.226 33.333 0.00 0.00 0.00 2.83
804 826 6.814343 ACACGACGTATGTTAGAAATGTTTC 58.186 36.000 0.00 0.00 37.45 2.78
806 828 6.948228 CACGACGTATGTTAGAAATGTTTCTG 59.052 38.462 16.20 2.68 46.34 3.02
807 829 5.952064 CGACGTATGTTAGAAATGTTTCTGC 59.048 40.000 16.20 10.26 46.34 4.26
808 830 6.400621 CGACGTATGTTAGAAATGTTTCTGCA 60.401 38.462 16.20 14.44 46.34 4.41
809 831 7.197071 ACGTATGTTAGAAATGTTTCTGCAA 57.803 32.000 16.20 3.12 46.34 4.08
810 832 7.075741 ACGTATGTTAGAAATGTTTCTGCAAC 58.924 34.615 16.20 13.57 46.34 4.17
816 838 4.234019 TGTTTCTGCAACACCGCT 57.766 50.000 0.00 0.00 40.71 5.52
817 839 2.021722 TGTTTCTGCAACACCGCTC 58.978 52.632 0.00 0.00 40.71 5.03
818 840 1.282875 GTTTCTGCAACACCGCTCC 59.717 57.895 0.00 0.00 35.18 4.70
819 841 1.148273 TTTCTGCAACACCGCTCCT 59.852 52.632 0.00 0.00 0.00 3.69
820 842 1.165907 TTTCTGCAACACCGCTCCTG 61.166 55.000 0.00 0.00 0.00 3.86
821 843 2.281070 CTGCAACACCGCTCCTGT 60.281 61.111 0.00 0.00 0.00 4.00
822 844 1.893808 CTGCAACACCGCTCCTGTT 60.894 57.895 0.00 0.00 31.80 3.16
824 846 2.639286 CAACACCGCTCCTGTTGC 59.361 61.111 5.42 0.00 41.45 4.17
825 847 2.186160 CAACACCGCTCCTGTTGCA 61.186 57.895 5.42 0.00 41.45 4.08
826 848 1.453015 AACACCGCTCCTGTTGCAA 60.453 52.632 0.00 0.00 30.46 4.08
827 849 1.447317 AACACCGCTCCTGTTGCAAG 61.447 55.000 0.00 0.00 30.46 4.01
828 850 1.597854 CACCGCTCCTGTTGCAAGA 60.598 57.895 0.00 0.00 0.00 3.02
829 851 1.302033 ACCGCTCCTGTTGCAAGAG 60.302 57.895 16.41 16.41 0.00 2.85
830 852 1.004560 CCGCTCCTGTTGCAAGAGA 60.005 57.895 24.21 8.81 0.00 3.10
831 853 1.018226 CCGCTCCTGTTGCAAGAGAG 61.018 60.000 24.21 18.15 0.00 3.20
832 854 1.018226 CGCTCCTGTTGCAAGAGAGG 61.018 60.000 24.21 17.16 0.00 3.69
833 855 0.036022 GCTCCTGTTGCAAGAGAGGT 59.964 55.000 24.21 0.00 32.18 3.85
834 856 1.805869 CTCCTGTTGCAAGAGAGGTG 58.194 55.000 24.21 14.22 32.18 4.00
835 857 1.345741 CTCCTGTTGCAAGAGAGGTGA 59.654 52.381 24.21 11.84 32.18 4.02
836 858 1.070758 TCCTGTTGCAAGAGAGGTGAC 59.929 52.381 24.21 0.00 32.18 3.67
837 859 1.143305 CTGTTGCAAGAGAGGTGACG 58.857 55.000 18.37 0.00 0.00 4.35
838 860 0.880278 TGTTGCAAGAGAGGTGACGC 60.880 55.000 0.00 0.00 0.00 5.19
839 861 0.880278 GTTGCAAGAGAGGTGACGCA 60.880 55.000 0.00 0.00 0.00 5.24
840 862 0.880278 TTGCAAGAGAGGTGACGCAC 60.880 55.000 0.00 1.92 0.00 5.34
841 863 1.300931 GCAAGAGAGGTGACGCACA 60.301 57.895 11.20 0.00 35.86 4.57
842 864 0.671781 GCAAGAGAGGTGACGCACAT 60.672 55.000 11.20 4.81 35.86 3.21
843 865 1.073964 CAAGAGAGGTGACGCACATG 58.926 55.000 11.20 0.00 35.86 3.21
844 866 0.036952 AAGAGAGGTGACGCACATGG 60.037 55.000 11.20 0.00 35.86 3.66
845 867 0.900182 AGAGAGGTGACGCACATGGA 60.900 55.000 11.20 0.00 35.86 3.41
846 868 0.176680 GAGAGGTGACGCACATGGAT 59.823 55.000 11.20 0.00 35.86 3.41
847 869 0.107993 AGAGGTGACGCACATGGATG 60.108 55.000 11.20 0.00 35.86 3.51
848 870 1.078214 AGGTGACGCACATGGATGG 60.078 57.895 11.20 0.00 35.86 3.51
849 871 2.114670 GGTGACGCACATGGATGGG 61.115 63.158 11.20 0.00 35.86 4.00
851 873 0.107897 GTGACGCACATGGATGGGTA 60.108 55.000 6.07 0.00 44.98 3.69
852 874 0.177836 TGACGCACATGGATGGGTAG 59.822 55.000 6.07 0.00 44.98 3.18
853 875 0.464036 GACGCACATGGATGGGTAGA 59.536 55.000 6.07 0.00 44.98 2.59
854 876 1.070758 GACGCACATGGATGGGTAGAT 59.929 52.381 6.07 0.00 44.98 1.98
855 877 1.070758 ACGCACATGGATGGGTAGATC 59.929 52.381 4.45 0.00 43.34 2.75
856 878 1.800805 GCACATGGATGGGTAGATCG 58.199 55.000 0.00 0.00 32.57 3.69
857 879 1.609061 GCACATGGATGGGTAGATCGG 60.609 57.143 0.00 0.00 32.57 4.18
858 880 1.970640 CACATGGATGGGTAGATCGGA 59.029 52.381 0.00 0.00 0.00 4.55
859 881 1.971357 ACATGGATGGGTAGATCGGAC 59.029 52.381 0.00 0.00 0.00 4.79
860 882 2.251818 CATGGATGGGTAGATCGGACT 58.748 52.381 1.51 0.00 0.00 3.85
861 883 1.704641 TGGATGGGTAGATCGGACTG 58.295 55.000 1.51 0.00 0.00 3.51
862 884 0.318762 GGATGGGTAGATCGGACTGC 59.681 60.000 1.51 0.00 0.00 4.40
863 885 1.333177 GATGGGTAGATCGGACTGCT 58.667 55.000 1.51 0.00 0.00 4.24
864 886 1.271102 GATGGGTAGATCGGACTGCTC 59.729 57.143 1.51 0.00 0.00 4.26
865 887 0.755698 TGGGTAGATCGGACTGCTCC 60.756 60.000 1.51 0.00 0.00 4.70
866 888 1.465200 GGGTAGATCGGACTGCTCCC 61.465 65.000 1.51 0.00 31.93 4.30
867 889 1.465200 GGTAGATCGGACTGCTCCCC 61.465 65.000 1.51 0.00 31.93 4.81
868 890 1.528542 TAGATCGGACTGCTCCCCG 60.529 63.158 0.00 0.00 46.57 5.73
869 891 4.593864 GATCGGACTGCTCCCCGC 62.594 72.222 0.00 0.00 44.96 6.13
877 899 2.192979 TGCTCCCCGCATCAATCC 59.807 61.111 0.00 0.00 45.47 3.01
878 900 2.192979 GCTCCCCGCATCAATCCA 59.807 61.111 0.00 0.00 38.92 3.41
879 901 1.453745 GCTCCCCGCATCAATCCAA 60.454 57.895 0.00 0.00 38.92 3.53
880 902 1.728490 GCTCCCCGCATCAATCCAAC 61.728 60.000 0.00 0.00 38.92 3.77
881 903 1.439353 CTCCCCGCATCAATCCAACG 61.439 60.000 0.00 0.00 0.00 4.10
882 904 2.480610 CCCCGCATCAATCCAACGG 61.481 63.158 0.00 0.00 43.44 4.44
883 905 2.408835 CCGCATCAATCCAACGGC 59.591 61.111 0.00 0.00 37.05 5.68
884 906 2.114670 CCGCATCAATCCAACGGCT 61.115 57.895 0.00 0.00 37.05 5.52
885 907 1.063006 CGCATCAATCCAACGGCTG 59.937 57.895 0.00 0.00 0.00 4.85
887 909 1.434696 CATCAATCCAACGGCTGGC 59.565 57.895 0.00 0.00 45.98 4.85
888 910 1.754234 ATCAATCCAACGGCTGGCC 60.754 57.895 0.00 0.00 45.98 5.36
889 911 2.497792 ATCAATCCAACGGCTGGCCA 62.498 55.000 4.71 4.71 45.98 5.36
890 912 2.361610 AATCCAACGGCTGGCCAG 60.362 61.111 29.34 29.34 45.98 4.85
891 913 3.944250 AATCCAACGGCTGGCCAGG 62.944 63.158 33.46 20.34 45.98 4.45
904 926 3.061848 CCAGGCGGCGGATGTTTT 61.062 61.111 11.43 0.00 0.00 2.43
905 927 2.485122 CAGGCGGCGGATGTTTTC 59.515 61.111 9.78 0.00 0.00 2.29
906 928 2.040544 CAGGCGGCGGATGTTTTCT 61.041 57.895 9.78 0.00 0.00 2.52
907 929 0.742990 CAGGCGGCGGATGTTTTCTA 60.743 55.000 9.78 0.00 0.00 2.10
908 930 0.462047 AGGCGGCGGATGTTTTCTAG 60.462 55.000 9.78 0.00 0.00 2.43
909 931 0.743345 GGCGGCGGATGTTTTCTAGT 60.743 55.000 9.78 0.00 0.00 2.57
910 932 1.084289 GCGGCGGATGTTTTCTAGTT 58.916 50.000 9.78 0.00 0.00 2.24
911 933 2.273557 GCGGCGGATGTTTTCTAGTTA 58.726 47.619 9.78 0.00 0.00 2.24
912 934 2.870411 GCGGCGGATGTTTTCTAGTTAT 59.130 45.455 9.78 0.00 0.00 1.89
913 935 3.059800 GCGGCGGATGTTTTCTAGTTATC 60.060 47.826 9.78 0.00 0.00 1.75
914 936 3.493503 CGGCGGATGTTTTCTAGTTATCC 59.506 47.826 0.00 0.00 35.16 2.59
915 937 4.448210 GGCGGATGTTTTCTAGTTATCCA 58.552 43.478 0.00 0.00 37.70 3.41
916 938 4.272748 GGCGGATGTTTTCTAGTTATCCAC 59.727 45.833 0.00 0.00 37.70 4.02
917 939 4.272748 GCGGATGTTTTCTAGTTATCCACC 59.727 45.833 0.00 0.00 37.70 4.61
918 940 4.506654 CGGATGTTTTCTAGTTATCCACCG 59.493 45.833 0.00 0.00 37.70 4.94
919 941 4.814771 GGATGTTTTCTAGTTATCCACCGG 59.185 45.833 0.00 0.00 37.75 5.28
920 942 3.602483 TGTTTTCTAGTTATCCACCGGC 58.398 45.455 0.00 0.00 0.00 6.13
921 943 3.262405 TGTTTTCTAGTTATCCACCGGCT 59.738 43.478 0.00 0.00 0.00 5.52
922 944 3.536956 TTTCTAGTTATCCACCGGCTG 57.463 47.619 0.00 0.00 0.00 4.85
923 945 2.447408 TCTAGTTATCCACCGGCTGA 57.553 50.000 0.00 0.00 0.00 4.26
924 946 2.029623 TCTAGTTATCCACCGGCTGAC 58.970 52.381 0.00 0.00 0.00 3.51
925 947 0.742505 TAGTTATCCACCGGCTGACG 59.257 55.000 0.00 0.00 43.80 4.35
926 948 2.171725 GTTATCCACCGGCTGACGC 61.172 63.158 0.00 0.00 42.52 5.19
927 949 3.709880 TTATCCACCGGCTGACGCG 62.710 63.158 3.53 3.53 42.52 6.01
945 967 2.702592 CGTAGCAACCCCCTAATGAA 57.297 50.000 0.00 0.00 0.00 2.57
950 972 2.513738 AGCAACCCCCTAATGAATAGCA 59.486 45.455 0.00 0.00 0.00 3.49
951 973 2.623416 GCAACCCCCTAATGAATAGCAC 59.377 50.000 0.00 0.00 0.00 4.40
952 974 3.897239 CAACCCCCTAATGAATAGCACA 58.103 45.455 0.00 0.00 0.00 4.57
957 979 5.139727 CCCCCTAATGAATAGCACAATCAA 58.860 41.667 0.00 0.00 0.00 2.57
1008 1049 6.250344 TGATATCGTACCCTAAGATTCGTG 57.750 41.667 0.00 0.00 0.00 4.35
1110 1213 8.388656 TGAAGTAGGTAAAATAGGATTGGAGT 57.611 34.615 0.00 0.00 0.00 3.85
1139 1242 0.469144 GCCCCCAGTGGACAGAAAAA 60.469 55.000 11.95 0.00 35.39 1.94
1156 1259 3.391506 AAAAACAAGAGGCATTGAGGC 57.608 42.857 9.15 0.00 44.61 4.70
1185 1290 0.036590 CCATTGGGCCTTTTTGGGTG 59.963 55.000 4.53 0.00 36.00 4.61
1186 1291 0.036590 CATTGGGCCTTTTTGGGTGG 59.963 55.000 4.53 0.00 36.00 4.61
1188 1293 2.122592 GGGCCTTTTTGGGTGGGT 60.123 61.111 0.84 0.00 36.00 4.51
1189 1294 2.515979 GGGCCTTTTTGGGTGGGTG 61.516 63.158 0.84 0.00 36.00 4.61
1203 1308 3.426568 GGTGTGCGGCAGAGAAGC 61.427 66.667 1.18 0.00 0.00 3.86
1204 1309 2.666190 GTGTGCGGCAGAGAAGCA 60.666 61.111 1.18 0.00 38.71 3.91
1205 1310 2.357881 TGTGCGGCAGAGAAGCAG 60.358 61.111 1.18 0.00 41.93 4.24
1206 1311 3.123620 GTGCGGCAGAGAAGCAGG 61.124 66.667 1.18 0.00 41.93 4.85
1209 1314 2.359107 CGGCAGAGAAGCAGGCAA 60.359 61.111 0.00 0.00 35.83 4.52
1210 1315 2.396955 CGGCAGAGAAGCAGGCAAG 61.397 63.158 0.00 0.00 35.83 4.01
1211 1316 1.303155 GGCAGAGAAGCAGGCAAGT 60.303 57.895 0.00 0.00 35.83 3.16
1212 1317 1.584380 GGCAGAGAAGCAGGCAAGTG 61.584 60.000 0.00 0.00 35.83 3.16
1214 1319 0.035881 CAGAGAAGCAGGCAAGTGGA 59.964 55.000 0.00 0.00 0.00 4.02
1216 1321 0.036022 GAGAAGCAGGCAAGTGGAGT 59.964 55.000 0.00 0.00 0.00 3.85
1217 1322 0.036022 AGAAGCAGGCAAGTGGAGTC 59.964 55.000 0.00 0.00 0.00 3.36
1219 1324 2.738213 AAGCAGGCAAGTGGAGTCCG 62.738 60.000 4.30 0.00 0.00 4.79
1220 1325 2.743718 CAGGCAAGTGGAGTCCGT 59.256 61.111 4.30 0.00 0.00 4.69
1221 1326 1.669115 CAGGCAAGTGGAGTCCGTG 60.669 63.158 4.30 3.84 0.00 4.94
1223 1328 2.358737 GCAAGTGGAGTCCGTGGG 60.359 66.667 4.30 0.00 0.00 4.61
1224 1329 2.879233 GCAAGTGGAGTCCGTGGGA 61.879 63.158 4.30 0.00 0.00 4.37
1226 1331 1.913762 AAGTGGAGTCCGTGGGAGG 60.914 63.158 4.30 0.00 29.39 4.30
1227 1332 3.391382 GTGGAGTCCGTGGGAGGG 61.391 72.222 4.30 0.00 29.39 4.30
1228 1333 3.596799 TGGAGTCCGTGGGAGGGA 61.597 66.667 4.30 0.00 29.39 4.20
1243 1361 0.543174 AGGGACACTCAGACCAGACC 60.543 60.000 0.00 0.00 33.38 3.85
1248 1408 0.319728 CACTCAGACCAGACCACCAG 59.680 60.000 0.00 0.00 0.00 4.00
1264 1424 1.153489 CAGCATGACTCCCGACCAG 60.153 63.158 0.00 0.00 39.69 4.00
1473 1663 4.286032 GCCTATCCACCTATACATGGTTGA 59.714 45.833 0.00 0.00 37.27 3.18
1567 1801 9.487790 GATATATAATCTCCAGAATTAGCAGGC 57.512 37.037 0.00 0.00 0.00 4.85
1568 1802 2.947127 ATCTCCAGAATTAGCAGGCC 57.053 50.000 0.00 0.00 0.00 5.19
1625 1874 5.382618 ACTGTTTCCTGAAATTCTGATGC 57.617 39.130 1.26 0.00 32.36 3.91
1645 1894 3.255642 TGCCCACTTGTTCAGAATTTAGC 59.744 43.478 0.00 0.00 0.00 3.09
1656 1905 7.332557 TGTTCAGAATTTAGCGGGTTATAAGA 58.667 34.615 0.00 0.00 0.00 2.10
1659 1908 7.506114 TCAGAATTTAGCGGGTTATAAGATGT 58.494 34.615 0.00 0.00 0.00 3.06
1678 1927 3.961849 TGTTTATCTGGTTATGGCTGCA 58.038 40.909 0.50 0.00 0.00 4.41
1681 1930 0.549950 ATCTGGTTATGGCTGCAGCT 59.450 50.000 35.82 21.35 41.70 4.24
1682 1931 0.393402 TCTGGTTATGGCTGCAGCTG 60.393 55.000 35.82 10.11 41.70 4.24
1708 1960 2.293399 CCTTTTGTCCCCTCTCAAAACG 59.707 50.000 0.00 0.00 38.20 3.60
1732 1985 5.348164 GCAAAAGGCTAAAACTTTGTCTGA 58.652 37.500 9.60 0.00 38.13 3.27
1733 1986 5.232202 GCAAAAGGCTAAAACTTTGTCTGAC 59.768 40.000 9.60 0.00 38.13 3.51
1734 1987 6.564328 CAAAAGGCTAAAACTTTGTCTGACT 58.436 36.000 9.51 0.00 38.13 3.41
1735 1988 5.757850 AAGGCTAAAACTTTGTCTGACTG 57.242 39.130 9.51 2.35 0.00 3.51
1752 2005 4.991776 TGACTGTAAATTGACCCAATCCA 58.008 39.130 0.00 0.00 32.43 3.41
1758 2011 6.498538 TGTAAATTGACCCAATCCAACCTAT 58.501 36.000 0.00 0.00 32.43 2.57
1759 2012 5.937975 AAATTGACCCAATCCAACCTATG 57.062 39.130 0.00 0.00 32.43 2.23
1768 2021 0.390603 TCCAACCTATGCCGTGTTCG 60.391 55.000 0.00 0.00 0.00 3.95
1783 2036 2.033151 GTGTTCGGAACAAAGTCTTCGG 60.033 50.000 23.93 0.00 44.16 4.30
1788 2041 0.164002 GAACAAAGTCTTCGGCGCTC 59.836 55.000 7.64 0.00 0.00 5.03
1804 2057 1.413382 GCTCGACTTCCTGCATATCG 58.587 55.000 0.00 0.00 0.00 2.92
1834 2087 2.126618 CGCACGCTAGTCGGTTGA 60.127 61.111 10.53 0.00 43.86 3.18
1859 2115 3.606846 GCGGAACCTAAAACGTAAACCAC 60.607 47.826 0.00 0.00 0.00 4.16
1894 2151 1.929169 CTGTCTGGTCATATGTGTGCG 59.071 52.381 1.90 0.00 0.00 5.34
1928 2185 2.563179 TGTGTCCCTCTTGAGCTACTTC 59.437 50.000 0.00 0.00 0.00 3.01
1933 2190 3.766591 TCCCTCTTGAGCTACTTCTGAAG 59.233 47.826 15.59 15.59 0.00 3.02
1947 2204 7.148557 GCTACTTCTGAAGAATTACAACACCTC 60.149 40.741 23.36 0.00 33.01 3.85
1948 2205 6.831976 ACTTCTGAAGAATTACAACACCTCT 58.168 36.000 23.36 0.00 33.01 3.69
1949 2206 7.283329 ACTTCTGAAGAATTACAACACCTCTT 58.717 34.615 23.36 0.00 33.01 2.85
1968 2229 7.334921 CACCTCTTTTTATGGAACGGTAACATA 59.665 37.037 0.00 1.85 0.00 2.29
1969 2230 8.050930 ACCTCTTTTTATGGAACGGTAACATAT 58.949 33.333 5.78 0.00 0.00 1.78
1974 2235 9.887629 TTTTTATGGAACGGTAACATATCTACA 57.112 29.630 5.78 0.00 0.00 2.74
2003 2264 2.676839 CTCATCTCAGGACAACACATGC 59.323 50.000 0.00 0.00 0.00 4.06
2086 2347 1.082117 CAGTGCCCGACGATTACACC 61.082 60.000 0.00 0.00 31.58 4.16
2090 2351 1.065273 CCCGACGATTACACCGAGG 59.935 63.158 0.00 0.00 0.00 4.63
2150 2411 2.380410 ACCGCTTCATCGCACGAAC 61.380 57.895 0.00 0.00 0.00 3.95
2203 2464 0.747283 CGGACGACAGGGCTACTACT 60.747 60.000 0.00 0.00 0.00 2.57
2217 2478 0.756903 ACTACTGCCAACGTCAACCT 59.243 50.000 0.00 0.00 0.00 3.50
2251 2512 5.627182 AGATATCTGACAAGCTGATTGGT 57.373 39.130 10.68 0.00 43.68 3.67
2353 2614 0.819259 ACTTCTTCAAGCGCTGCCAA 60.819 50.000 12.58 2.85 32.09 4.52
2428 2689 5.794894 CTGGCTAGAAAACTGAAAGAGGTA 58.205 41.667 0.00 0.00 37.43 3.08
2429 2690 5.548406 TGGCTAGAAAACTGAAAGAGGTAC 58.452 41.667 0.00 0.00 37.43 3.34
2430 2691 5.071250 TGGCTAGAAAACTGAAAGAGGTACA 59.929 40.000 0.00 0.00 37.43 2.90
2432 2693 5.639931 GCTAGAAAACTGAAAGAGGTACAGG 59.360 44.000 0.00 0.00 37.43 4.00
2433 2694 5.888982 AGAAAACTGAAAGAGGTACAGGA 57.111 39.130 0.00 0.00 37.43 3.86
2434 2695 6.441088 AGAAAACTGAAAGAGGTACAGGAT 57.559 37.500 0.00 0.00 37.43 3.24
2441 2723 4.164796 TGAAAGAGGTACAGGATGCATGAT 59.835 41.667 2.46 0.00 42.53 2.45
2443 2725 2.149578 GAGGTACAGGATGCATGATGC 58.850 52.381 11.12 11.12 42.53 3.91
2451 2736 4.202121 ACAGGATGCATGATGCTTCATTTC 60.202 41.667 27.41 14.50 45.84 2.17
2558 2879 9.722056 GTACAAAGGCATAATGAACTATTTGAG 57.278 33.333 0.00 0.00 32.28 3.02
2581 2902 2.163818 GTGAAATCCACACCGTCTGA 57.836 50.000 0.00 0.00 45.03 3.27
2582 2903 2.699954 GTGAAATCCACACCGTCTGAT 58.300 47.619 0.00 0.00 45.03 2.90
2594 2915 4.695455 ACACCGTCTGATAAAATTGGTGAG 59.305 41.667 14.76 0.00 46.36 3.51
2715 3036 5.163913 GGTGAGACACTTGAGAATTTGATCG 60.164 44.000 0.00 0.00 34.40 3.69
2719 3040 5.406780 AGACACTTGAGAATTTGATCGTCAC 59.593 40.000 0.00 0.00 0.00 3.67
2737 3058 4.797868 CGTCACTTTTCTGCAAATTTGACA 59.202 37.500 22.31 16.61 37.24 3.58
2760 3083 9.399403 GACATTTTTCCTCTTTCATGTCTTAAC 57.601 33.333 0.00 0.00 38.22 2.01
2762 3085 6.554334 TTTTCCTCTTTCATGTCTTAACGG 57.446 37.500 0.00 0.00 0.00 4.44
2845 3248 6.611381 TGGTTCATCATTTTTCTCGTTCATC 58.389 36.000 0.00 0.00 0.00 2.92
2864 3267 0.662619 CGGTTTGCTTGCAGAGTTGA 59.337 50.000 0.00 0.00 0.00 3.18
3028 3431 0.610687 ACTTGGCCGAGAAGAAGGAG 59.389 55.000 27.65 0.00 0.00 3.69
3114 3517 4.032900 CACAAAATCGGACGTAAGGATCTG 59.967 45.833 0.00 0.00 46.39 2.90
3120 3523 0.595310 GACGTAAGGATCTGGCGCTC 60.595 60.000 7.64 0.00 46.39 5.03
3121 3524 1.038130 ACGTAAGGATCTGGCGCTCT 61.038 55.000 7.64 0.00 46.39 4.09
3122 3525 0.596083 CGTAAGGATCTGGCGCTCTG 60.596 60.000 7.64 1.60 0.00 3.35
3123 3526 0.878086 GTAAGGATCTGGCGCTCTGC 60.878 60.000 7.64 0.00 45.38 4.26
3134 3537 1.839598 GCGCTCTGCATACTGGCATC 61.840 60.000 0.00 0.00 43.97 3.91
3153 3556 4.221482 GCATCCTTCTTTCCCATCTTTGTT 59.779 41.667 0.00 0.00 0.00 2.83
3157 3560 5.301805 TCCTTCTTTCCCATCTTTGTTTCAC 59.698 40.000 0.00 0.00 0.00 3.18
3159 3562 5.772825 TCTTTCCCATCTTTGTTTCACTG 57.227 39.130 0.00 0.00 0.00 3.66
3160 3563 5.200483 TCTTTCCCATCTTTGTTTCACTGT 58.800 37.500 0.00 0.00 0.00 3.55
3161 3564 6.361433 TCTTTCCCATCTTTGTTTCACTGTA 58.639 36.000 0.00 0.00 0.00 2.74
3162 3565 6.262273 TCTTTCCCATCTTTGTTTCACTGTAC 59.738 38.462 0.00 0.00 0.00 2.90
3163 3566 5.042463 TCCCATCTTTGTTTCACTGTACA 57.958 39.130 0.00 0.00 0.00 2.90
3167 3570 7.069331 TCCCATCTTTGTTTCACTGTACAATTT 59.931 33.333 0.00 0.00 34.52 1.82
3168 3571 7.382218 CCCATCTTTGTTTCACTGTACAATTTC 59.618 37.037 0.00 0.00 34.52 2.17
3169 3572 7.920151 CCATCTTTGTTTCACTGTACAATTTCA 59.080 33.333 0.00 0.00 34.52 2.69
3170 3573 9.467258 CATCTTTGTTTCACTGTACAATTTCAT 57.533 29.630 0.00 0.00 34.52 2.57
3171 3574 9.683069 ATCTTTGTTTCACTGTACAATTTCATC 57.317 29.630 0.00 0.00 34.52 2.92
3172 3575 8.681806 TCTTTGTTTCACTGTACAATTTCATCA 58.318 29.630 0.00 0.00 34.52 3.07
3173 3576 8.627487 TTTGTTTCACTGTACAATTTCATCAC 57.373 30.769 0.00 0.00 34.52 3.06
3174 3577 7.326968 TGTTTCACTGTACAATTTCATCACA 57.673 32.000 0.00 0.00 0.00 3.58
3175 3578 7.766283 TGTTTCACTGTACAATTTCATCACAA 58.234 30.769 0.00 0.00 0.00 3.33
3178 3581 9.814899 TTTCACTGTACAATTTCATCACAAAAT 57.185 25.926 0.00 0.00 0.00 1.82
3309 3720 0.391661 TTGAGGATCCAGCAGAACGC 60.392 55.000 15.82 0.00 42.91 4.84
3404 3815 7.919313 CGTAAGTACTGTTAGTCTTTCACAA 57.081 36.000 0.00 0.00 0.00 3.33
3405 3816 8.343974 CGTAAGTACTGTTAGTCTTTCACAAA 57.656 34.615 0.00 0.00 0.00 2.83
3406 3817 8.810427 CGTAAGTACTGTTAGTCTTTCACAAAA 58.190 33.333 0.00 0.00 0.00 2.44
3472 3883 1.450312 GGTGGATTGCAGGAGTCCG 60.450 63.158 2.76 0.00 34.72 4.79
3557 3968 4.299796 TTGGGCAGGCAAGGGACC 62.300 66.667 0.00 0.00 0.00 4.46
3595 4006 8.512966 AAATTATAAAGAGGGTTGAAGAGCTC 57.487 34.615 5.27 5.27 0.00 4.09
3596 4007 6.875972 TTATAAAGAGGGTTGAAGAGCTCT 57.124 37.500 11.45 11.45 0.00 4.09
3637 4048 6.190587 TCAATACCTCTGACTCTGAATCTCA 58.809 40.000 0.00 0.00 0.00 3.27
3651 4062 6.404708 TCTGAATCTCAGTCATCAAGAAAGG 58.595 40.000 3.71 0.00 44.58 3.11
3658 4069 2.887152 AGTCATCAAGAAAGGTTGTGGC 59.113 45.455 0.00 0.00 0.00 5.01
3665 4076 0.818040 GAAAGGTTGTGGCCTCACGT 60.818 55.000 7.09 2.22 46.42 4.49
3673 4084 1.180029 GTGGCCTCACGTTCCTAGTA 58.820 55.000 3.32 0.00 33.87 1.82
3675 4086 1.547372 TGGCCTCACGTTCCTAGTAAC 59.453 52.381 3.32 0.00 0.00 2.50
3679 4090 2.230508 CCTCACGTTCCTAGTAACTGCA 59.769 50.000 0.00 0.00 0.00 4.41
3750 4180 2.673200 GGAGCTCCTGTCCATGGCA 61.673 63.158 26.25 7.80 33.84 4.92
3759 4189 2.048603 GTCCATGGCAGCTGGGAAC 61.049 63.158 17.12 4.96 34.36 3.62
3760 4190 2.036098 CCATGGCAGCTGGGAACA 59.964 61.111 17.12 0.00 39.59 3.18
3780 4210 6.583806 GGAACAAAGAATGCAATACTTCACAG 59.416 38.462 0.00 0.00 0.00 3.66
3781 4211 6.882610 ACAAAGAATGCAATACTTCACAGA 57.117 33.333 0.00 0.00 0.00 3.41
3782 4212 6.672147 ACAAAGAATGCAATACTTCACAGAC 58.328 36.000 0.00 0.00 0.00 3.51
3783 4213 6.488006 ACAAAGAATGCAATACTTCACAGACT 59.512 34.615 0.00 0.00 0.00 3.24
3784 4214 7.661437 ACAAAGAATGCAATACTTCACAGACTA 59.339 33.333 0.00 0.00 0.00 2.59
3785 4215 8.506437 CAAAGAATGCAATACTTCACAGACTAA 58.494 33.333 0.00 0.00 0.00 2.24
3787 4217 8.798859 AGAATGCAATACTTCACAGACTAAAT 57.201 30.769 0.00 0.00 0.00 1.40
3790 4226 9.448438 AATGCAATACTTCACAGACTAAATACA 57.552 29.630 0.00 0.00 0.00 2.29
3797 4233 4.990257 TCACAGACTAAATACAGTACGGC 58.010 43.478 0.00 0.00 0.00 5.68
3814 4250 1.070577 CGGCGCATAAGTGATTGTAGC 60.071 52.381 10.83 0.00 0.00 3.58
3815 4251 1.939934 GGCGCATAAGTGATTGTAGCA 59.060 47.619 10.83 0.00 0.00 3.49
3845 4281 6.884832 TGTATGGATGTAGGTTTCACTTAGG 58.115 40.000 0.00 0.00 0.00 2.69
3858 4295 6.592994 GGTTTCACTTAGGTGTATGTCTTACC 59.407 42.308 4.75 0.00 43.41 2.85
3881 4319 3.328050 CCCTCAACCTCCCCATAGATAAC 59.672 52.174 0.00 0.00 0.00 1.89
3956 4394 6.820656 ACTGAGAGAATAGCACTTTATTGTGG 59.179 38.462 0.00 0.00 38.31 4.17
4044 4482 5.163301 ACTGGTGACTGACATAAAAGTGAGT 60.163 40.000 0.00 0.00 38.69 3.41
4091 4529 3.996363 TGCTGCTAGTTATCAACAGTGTG 59.004 43.478 0.00 0.00 0.00 3.82
4114 4552 5.221481 TGTCATTTACGTGAAGGTGGAGTTA 60.221 40.000 4.61 0.00 0.00 2.24
4123 4561 4.037565 GTGAAGGTGGAGTTAAAGTTTGGG 59.962 45.833 0.00 0.00 0.00 4.12
4222 4764 6.703165 TGTTAGTCATATGTTAGCTGCTGATG 59.297 38.462 13.43 7.98 0.00 3.07
4243 4785 5.222079 TGCAGGTAAAGAACTGTATCACA 57.778 39.130 0.00 0.00 37.07 3.58
4244 4786 5.804639 TGCAGGTAAAGAACTGTATCACAT 58.195 37.500 0.00 0.00 37.07 3.21
4286 4828 6.037726 TCTGAAATCGCCATCATGAAAAATG 58.962 36.000 0.00 0.00 0.00 2.32
4348 4893 5.273208 TCTTGGTCTTAGAATGTAGCCTCT 58.727 41.667 0.00 0.00 0.00 3.69
4349 4894 5.361285 TCTTGGTCTTAGAATGTAGCCTCTC 59.639 44.000 0.00 0.00 0.00 3.20
4350 4895 4.610333 TGGTCTTAGAATGTAGCCTCTCA 58.390 43.478 0.00 0.00 0.00 3.27
4375 4920 6.042093 ACCAGACTTCAATGTGTCTAGAAGAA 59.958 38.462 7.90 0.00 41.06 2.52
4413 4959 0.669318 GGGTCAGCGAAACATCGACA 60.669 55.000 1.91 0.00 34.64 4.35
4541 5088 5.604231 AGCATCCTTTTTCTTTTCTCCCTTT 59.396 36.000 0.00 0.00 0.00 3.11
4542 5089 6.782494 AGCATCCTTTTTCTTTTCTCCCTTTA 59.218 34.615 0.00 0.00 0.00 1.85
4543 5090 7.039434 AGCATCCTTTTTCTTTTCTCCCTTTAG 60.039 37.037 0.00 0.00 0.00 1.85
4544 5091 7.039714 GCATCCTTTTTCTTTTCTCCCTTTAGA 60.040 37.037 0.00 0.00 0.00 2.10
4545 5092 9.029368 CATCCTTTTTCTTTTCTCCCTTTAGAT 57.971 33.333 0.00 0.00 0.00 1.98
4546 5093 8.409358 TCCTTTTTCTTTTCTCCCTTTAGATG 57.591 34.615 0.00 0.00 0.00 2.90
4547 5094 8.004801 TCCTTTTTCTTTTCTCCCTTTAGATGT 58.995 33.333 0.00 0.00 0.00 3.06
4549 5096 7.524717 TTTTCTTTTCTCCCTTTAGATGTGG 57.475 36.000 0.00 0.00 0.00 4.17
4551 5098 3.366052 TTTCTCCCTTTAGATGTGGCC 57.634 47.619 0.00 0.00 0.00 5.36
4552 5099 2.270434 TCTCCCTTTAGATGTGGCCT 57.730 50.000 3.32 0.00 0.00 5.19
4553 5100 2.119495 TCTCCCTTTAGATGTGGCCTC 58.881 52.381 3.32 0.00 0.00 4.70
4554 5101 1.839994 CTCCCTTTAGATGTGGCCTCA 59.160 52.381 10.45 10.45 0.00 3.86
4555 5102 2.239654 CTCCCTTTAGATGTGGCCTCAA 59.760 50.000 12.26 0.00 0.00 3.02
4599 5146 7.273381 CCAACAACACAAAAAGAAAGACTACAG 59.727 37.037 0.00 0.00 0.00 2.74
4600 5147 7.681939 ACAACACAAAAAGAAAGACTACAGA 57.318 32.000 0.00 0.00 0.00 3.41
4608 5155 9.840427 CAAAAAGAAAGACTACAGAAAGTTCAA 57.160 29.630 0.00 0.00 0.00 2.69
4639 5186 3.141398 TCTTTCAGTTAGGCAACAGCAG 58.859 45.455 0.00 0.00 37.10 4.24
4642 5189 0.953727 CAGTTAGGCAACAGCAGCAA 59.046 50.000 0.00 0.00 37.10 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.054140 TTGCGTTTTGGAGACCACGC 62.054 55.000 14.25 14.25 43.57 5.34
128 133 4.307432 CGGATCTCGTACCTATTGCAATT 58.693 43.478 18.75 1.86 0.00 2.32
139 144 2.333389 ATTCATCGCGGATCTCGTAC 57.667 50.000 6.13 0.00 41.72 3.67
155 160 9.529325 TGTACTAGCAATGAACTGTGTATATTC 57.471 33.333 0.00 0.00 0.00 1.75
186 191 9.807649 TCACCCGTTTAGTTTAGAAATATCTAC 57.192 33.333 0.00 0.00 37.88 2.59
189 194 7.011763 GGGTCACCCGTTTAGTTTAGAAATATC 59.988 40.741 0.00 0.00 32.13 1.63
191 196 6.172630 GGGTCACCCGTTTAGTTTAGAAATA 58.827 40.000 0.00 0.00 32.13 1.40
194 199 4.006780 GGGTCACCCGTTTAGTTTAGAA 57.993 45.455 0.00 0.00 32.13 2.10
207 213 1.102978 GCATTACACATGGGTCACCC 58.897 55.000 5.63 5.63 45.71 4.61
225 235 8.116651 TCCACTAGTCATAGATAAGATCTTGC 57.883 38.462 18.47 9.83 40.76 4.01
253 263 6.402983 GCGAATGTGATTATCCATGAGATTCC 60.403 42.308 0.00 0.00 36.33 3.01
258 268 3.742882 ACGCGAATGTGATTATCCATGAG 59.257 43.478 15.93 0.00 0.00 2.90
273 283 1.575244 CATCTCCATCACACGCGAAT 58.425 50.000 15.93 0.00 0.00 3.34
277 287 0.461548 TCTCCATCTCCATCACACGC 59.538 55.000 0.00 0.00 0.00 5.34
323 339 2.092592 TCCATAGTCGACCAGTCAGCTA 60.093 50.000 13.01 0.00 0.00 3.32
324 340 1.107114 CCATAGTCGACCAGTCAGCT 58.893 55.000 13.01 0.00 0.00 4.24
342 363 2.098117 GTCAATGTTAGCAGTGCCATCC 59.902 50.000 12.58 0.00 40.17 3.51
344 365 2.751259 CTGTCAATGTTAGCAGTGCCAT 59.249 45.455 12.58 5.45 40.17 4.40
349 370 3.251729 CACTTGCTGTCAATGTTAGCAGT 59.748 43.478 12.14 10.37 46.78 4.40
350 371 3.365666 CCACTTGCTGTCAATGTTAGCAG 60.366 47.826 12.14 9.92 46.78 4.24
351 372 2.553602 CCACTTGCTGTCAATGTTAGCA 59.446 45.455 9.34 9.34 44.92 3.49
352 373 2.554032 ACCACTTGCTGTCAATGTTAGC 59.446 45.455 4.95 4.95 37.93 3.09
354 375 2.884012 CCACCACTTGCTGTCAATGTTA 59.116 45.455 0.00 0.00 0.00 2.41
356 377 1.133823 TCCACCACTTGCTGTCAATGT 60.134 47.619 0.00 0.00 0.00 2.71
357 378 1.608055 TCCACCACTTGCTGTCAATG 58.392 50.000 0.00 0.00 0.00 2.82
358 379 1.956477 GTTCCACCACTTGCTGTCAAT 59.044 47.619 0.00 0.00 0.00 2.57
359 380 1.340502 TGTTCCACCACTTGCTGTCAA 60.341 47.619 0.00 0.00 0.00 3.18
360 381 0.254462 TGTTCCACCACTTGCTGTCA 59.746 50.000 0.00 0.00 0.00 3.58
361 382 1.334869 CTTGTTCCACCACTTGCTGTC 59.665 52.381 0.00 0.00 0.00 3.51
362 383 1.392589 CTTGTTCCACCACTTGCTGT 58.607 50.000 0.00 0.00 0.00 4.40
363 384 0.670162 CCTTGTTCCACCACTTGCTG 59.330 55.000 0.00 0.00 0.00 4.41
364 385 0.550914 TCCTTGTTCCACCACTTGCT 59.449 50.000 0.00 0.00 0.00 3.91
365 386 1.398692 TTCCTTGTTCCACCACTTGC 58.601 50.000 0.00 0.00 0.00 4.01
366 387 2.223479 CGTTTCCTTGTTCCACCACTTG 60.223 50.000 0.00 0.00 0.00 3.16
368 389 1.675552 CGTTTCCTTGTTCCACCACT 58.324 50.000 0.00 0.00 0.00 4.00
369 390 0.666374 CCGTTTCCTTGTTCCACCAC 59.334 55.000 0.00 0.00 0.00 4.16
370 391 0.256464 ACCGTTTCCTTGTTCCACCA 59.744 50.000 0.00 0.00 0.00 4.17
371 392 0.949397 GACCGTTTCCTTGTTCCACC 59.051 55.000 0.00 0.00 0.00 4.61
372 393 1.670791 TGACCGTTTCCTTGTTCCAC 58.329 50.000 0.00 0.00 0.00 4.02
378 399 5.391629 GGCTAATAACTTGACCGTTTCCTTG 60.392 44.000 0.00 0.00 0.00 3.61
381 402 4.094442 CAGGCTAATAACTTGACCGTTTCC 59.906 45.833 0.00 0.00 0.00 3.13
403 424 8.594550 AGTCATGAGTCATATTCATCATCATCA 58.405 33.333 5.03 0.00 33.14 3.07
453 474 4.720649 AAACATCTTCTTCCTCGATCGA 57.279 40.909 18.32 18.32 0.00 3.59
454 475 5.786401 AAAAACATCTTCTTCCTCGATCG 57.214 39.130 9.36 9.36 0.00 3.69
473 494 0.460987 CCGTGCACAAAGGGCAAAAA 60.461 50.000 18.64 0.00 43.91 1.94
474 495 1.142748 CCGTGCACAAAGGGCAAAA 59.857 52.632 18.64 0.00 43.91 2.44
513 534 2.103941 GGGACCTTGACCTCATCTCATC 59.896 54.545 0.00 0.00 0.00 2.92
555 576 4.562143 GCACCAAATTCTTCCAGAAGCAAT 60.562 41.667 2.38 1.91 37.69 3.56
556 577 3.243839 GCACCAAATTCTTCCAGAAGCAA 60.244 43.478 2.38 0.00 37.69 3.91
557 578 2.297033 GCACCAAATTCTTCCAGAAGCA 59.703 45.455 2.38 0.00 37.69 3.91
558 579 2.297033 TGCACCAAATTCTTCCAGAAGC 59.703 45.455 2.38 0.00 37.69 3.86
559 580 3.610114 CGTGCACCAAATTCTTCCAGAAG 60.610 47.826 12.15 0.73 37.69 2.85
561 582 1.879380 CGTGCACCAAATTCTTCCAGA 59.121 47.619 12.15 0.00 0.00 3.86
562 583 1.666888 GCGTGCACCAAATTCTTCCAG 60.667 52.381 12.15 0.00 0.00 3.86
564 585 0.388520 GGCGTGCACCAAATTCTTCC 60.389 55.000 12.15 0.00 0.00 3.46
565 586 0.313672 TGGCGTGCACCAAATTCTTC 59.686 50.000 12.15 0.00 36.55 2.87
566 587 0.968405 ATGGCGTGCACCAAATTCTT 59.032 45.000 12.15 0.00 44.65 2.52
567 588 1.832883 TATGGCGTGCACCAAATTCT 58.167 45.000 12.15 0.00 44.65 2.40
568 589 2.859538 CAATATGGCGTGCACCAAATTC 59.140 45.455 12.15 0.00 44.65 2.17
569 590 2.418471 CCAATATGGCGTGCACCAAATT 60.418 45.455 12.15 1.70 44.65 1.82
570 591 1.136695 CCAATATGGCGTGCACCAAAT 59.863 47.619 12.15 4.67 44.65 2.32
571 592 0.529833 CCAATATGGCGTGCACCAAA 59.470 50.000 12.15 0.00 44.65 3.28
572 593 0.322906 TCCAATATGGCGTGCACCAA 60.323 50.000 12.15 0.00 44.65 3.67
575 596 0.463654 TCCTCCAATATGGCGTGCAC 60.464 55.000 6.82 6.82 37.47 4.57
595 617 1.882912 TTCTGGTGACACACTCATGC 58.117 50.000 8.08 0.00 34.40 4.06
609 631 1.582968 GCTGTGTGCACCATTCTGG 59.417 57.895 15.69 1.23 45.02 3.86
612 634 0.310543 TTTCGCTGTGTGCACCATTC 59.689 50.000 15.69 3.00 43.06 2.67
619 641 0.100503 ACTTGGTTTTCGCTGTGTGC 59.899 50.000 0.00 0.00 38.57 4.57
623 645 1.607148 GCCTAACTTGGTTTTCGCTGT 59.393 47.619 0.00 0.00 0.00 4.40
624 646 1.606668 TGCCTAACTTGGTTTTCGCTG 59.393 47.619 0.00 0.00 0.00 5.18
626 648 1.335597 GGTGCCTAACTTGGTTTTCGC 60.336 52.381 0.00 0.00 0.00 4.70
627 649 1.950909 TGGTGCCTAACTTGGTTTTCG 59.049 47.619 0.00 0.00 0.00 3.46
628 650 3.056821 GGATGGTGCCTAACTTGGTTTTC 60.057 47.826 0.00 0.00 0.00 2.29
629 651 2.897326 GGATGGTGCCTAACTTGGTTTT 59.103 45.455 0.00 0.00 0.00 2.43
630 652 2.525368 GGATGGTGCCTAACTTGGTTT 58.475 47.619 0.00 0.00 0.00 3.27
631 653 1.272480 GGGATGGTGCCTAACTTGGTT 60.272 52.381 0.00 0.00 0.00 3.67
632 654 0.331616 GGGATGGTGCCTAACTTGGT 59.668 55.000 0.00 0.00 0.00 3.67
633 655 0.625849 AGGGATGGTGCCTAACTTGG 59.374 55.000 0.00 0.00 35.97 3.61
634 656 2.094675 CAAGGGATGGTGCCTAACTTG 58.905 52.381 0.00 0.00 37.13 3.16
635 657 1.616994 GCAAGGGATGGTGCCTAACTT 60.617 52.381 0.00 0.00 37.13 2.66
636 658 0.034089 GCAAGGGATGGTGCCTAACT 60.034 55.000 0.00 0.00 37.13 2.24
637 659 0.034089 AGCAAGGGATGGTGCCTAAC 60.034 55.000 0.00 0.00 37.13 2.34
638 660 1.490490 CTAGCAAGGGATGGTGCCTAA 59.510 52.381 0.00 0.00 37.13 2.69
639 661 1.131638 CTAGCAAGGGATGGTGCCTA 58.868 55.000 0.00 0.00 37.13 3.93
640 662 0.916358 ACTAGCAAGGGATGGTGCCT 60.916 55.000 0.00 0.00 41.29 4.75
641 663 0.837272 TACTAGCAAGGGATGGTGCC 59.163 55.000 0.00 0.00 40.70 5.01
642 664 2.938956 ATACTAGCAAGGGATGGTGC 57.061 50.000 0.00 0.00 40.70 5.01
643 665 4.949856 ACAAAATACTAGCAAGGGATGGTG 59.050 41.667 0.00 0.00 40.70 4.17
644 666 5.193099 ACAAAATACTAGCAAGGGATGGT 57.807 39.130 0.00 0.00 43.54 3.55
645 667 5.888161 AGAACAAAATACTAGCAAGGGATGG 59.112 40.000 0.00 0.00 0.00 3.51
646 668 7.770897 AGTAGAACAAAATACTAGCAAGGGATG 59.229 37.037 0.00 0.00 30.50 3.51
647 669 7.862675 AGTAGAACAAAATACTAGCAAGGGAT 58.137 34.615 0.00 0.00 30.50 3.85
648 670 7.253905 AGTAGAACAAAATACTAGCAAGGGA 57.746 36.000 0.00 0.00 30.50 4.20
649 671 7.390718 ACAAGTAGAACAAAATACTAGCAAGGG 59.609 37.037 0.00 0.00 32.01 3.95
650 672 8.324163 ACAAGTAGAACAAAATACTAGCAAGG 57.676 34.615 0.00 0.00 32.01 3.61
652 674 9.944663 CAAACAAGTAGAACAAAATACTAGCAA 57.055 29.630 0.00 0.00 32.01 3.91
653 675 9.116067 ACAAACAAGTAGAACAAAATACTAGCA 57.884 29.630 0.00 0.00 32.01 3.49
703 725 6.762702 TTTTGATTGCTCTATTCATCAGCA 57.237 33.333 0.00 0.00 41.45 4.41
727 749 9.349713 TGTTCCAGAATTCTTTGTTGTAGTAAT 57.650 29.630 4.86 0.00 0.00 1.89
729 751 8.918202 ATGTTCCAGAATTCTTTGTTGTAGTA 57.082 30.769 4.86 0.00 0.00 1.82
730 752 7.502226 TGATGTTCCAGAATTCTTTGTTGTAGT 59.498 33.333 4.86 0.00 0.00 2.73
731 753 7.805071 GTGATGTTCCAGAATTCTTTGTTGTAG 59.195 37.037 4.86 0.00 0.00 2.74
733 755 6.461509 GGTGATGTTCCAGAATTCTTTGTTGT 60.462 38.462 4.86 0.00 0.00 3.32
734 756 5.922544 GGTGATGTTCCAGAATTCTTTGTTG 59.077 40.000 4.86 0.00 0.00 3.33
735 757 5.835280 AGGTGATGTTCCAGAATTCTTTGTT 59.165 36.000 4.86 0.00 0.00 2.83
736 758 5.388654 AGGTGATGTTCCAGAATTCTTTGT 58.611 37.500 4.86 0.00 0.00 2.83
738 760 5.709164 CAGAGGTGATGTTCCAGAATTCTTT 59.291 40.000 4.86 0.00 0.00 2.52
739 761 5.222007 ACAGAGGTGATGTTCCAGAATTCTT 60.222 40.000 4.86 0.00 0.00 2.52
740 762 4.288105 ACAGAGGTGATGTTCCAGAATTCT 59.712 41.667 0.88 0.88 0.00 2.40
741 763 4.583871 ACAGAGGTGATGTTCCAGAATTC 58.416 43.478 0.00 0.00 0.00 2.17
745 767 2.705658 ACAACAGAGGTGATGTTCCAGA 59.294 45.455 0.00 0.00 36.32 3.86
746 768 3.131709 ACAACAGAGGTGATGTTCCAG 57.868 47.619 0.00 0.00 36.32 3.86
747 769 4.698201 TTACAACAGAGGTGATGTTCCA 57.302 40.909 0.00 0.00 40.06 3.53
748 770 4.455877 CCTTTACAACAGAGGTGATGTTCC 59.544 45.833 0.00 0.00 40.06 3.62
749 771 5.063880 ACCTTTACAACAGAGGTGATGTTC 58.936 41.667 0.00 0.00 42.04 3.18
750 772 5.048846 ACCTTTACAACAGAGGTGATGTT 57.951 39.130 0.00 0.00 42.04 2.71
751 773 4.706842 ACCTTTACAACAGAGGTGATGT 57.293 40.909 0.00 0.00 42.04 3.06
752 774 6.391227 AAAACCTTTACAACAGAGGTGATG 57.609 37.500 0.00 0.00 42.78 3.07
753 775 7.937649 GTAAAAACCTTTACAACAGAGGTGAT 58.062 34.615 3.48 0.00 44.29 3.06
765 787 5.559227 ACGTCGTGTTGTAAAAACCTTTAC 58.441 37.500 0.00 1.64 44.86 2.01
766 788 5.793026 ACGTCGTGTTGTAAAAACCTTTA 57.207 34.783 0.00 0.00 26.99 1.85
771 793 7.554732 TCTAACATACGTCGTGTTGTAAAAAC 58.445 34.615 22.36 0.00 39.88 2.43
773 795 7.691430 TTCTAACATACGTCGTGTTGTAAAA 57.309 32.000 22.36 11.97 39.88 1.52
774 796 7.691430 TTTCTAACATACGTCGTGTTGTAAA 57.309 32.000 22.36 18.73 39.88 2.01
775 797 7.381948 ACATTTCTAACATACGTCGTGTTGTAA 59.618 33.333 22.36 15.43 39.88 2.41
778 800 6.148270 ACATTTCTAACATACGTCGTGTTG 57.852 37.500 22.36 8.29 39.88 3.33
779 801 6.774354 AACATTTCTAACATACGTCGTGTT 57.226 33.333 19.17 19.17 42.12 3.32
780 802 6.643770 AGAAACATTTCTAACATACGTCGTGT 59.356 34.615 8.47 0.00 45.17 4.49
781 803 6.948228 CAGAAACATTTCTAACATACGTCGTG 59.052 38.462 8.47 0.00 45.23 4.35
782 804 6.400727 GCAGAAACATTTCTAACATACGTCGT 60.401 38.462 6.56 2.21 45.23 4.34
783 805 5.952064 GCAGAAACATTTCTAACATACGTCG 59.048 40.000 6.56 0.00 45.23 5.12
784 806 6.827641 TGCAGAAACATTTCTAACATACGTC 58.172 36.000 6.56 0.00 45.23 4.34
799 821 1.444119 GGAGCGGTGTTGCAGAAACA 61.444 55.000 0.00 0.00 46.66 2.83
800 822 1.166531 AGGAGCGGTGTTGCAGAAAC 61.167 55.000 0.00 0.00 39.41 2.78
801 823 1.148273 AGGAGCGGTGTTGCAGAAA 59.852 52.632 0.00 0.00 37.31 2.52
802 824 1.597854 CAGGAGCGGTGTTGCAGAA 60.598 57.895 0.00 0.00 37.31 3.02
803 825 2.031012 CAGGAGCGGTGTTGCAGA 59.969 61.111 0.00 0.00 37.31 4.26
804 826 1.893808 AACAGGAGCGGTGTTGCAG 60.894 57.895 0.00 0.00 36.76 4.41
805 827 2.186160 CAACAGGAGCGGTGTTGCA 61.186 57.895 13.56 0.00 46.03 4.08
806 828 2.639286 CAACAGGAGCGGTGTTGC 59.361 61.111 13.56 0.00 46.03 4.17
808 830 1.447317 CTTGCAACAGGAGCGGTGTT 61.447 55.000 0.00 0.00 38.71 3.32
809 831 1.893808 CTTGCAACAGGAGCGGTGT 60.894 57.895 0.00 0.00 33.85 4.16
810 832 1.572085 CTCTTGCAACAGGAGCGGTG 61.572 60.000 0.00 0.00 31.30 4.94
811 833 1.302033 CTCTTGCAACAGGAGCGGT 60.302 57.895 0.00 0.00 31.30 5.68
812 834 1.004560 TCTCTTGCAACAGGAGCGG 60.005 57.895 8.86 0.00 37.48 5.52
813 835 1.018226 CCTCTCTTGCAACAGGAGCG 61.018 60.000 8.86 3.81 37.48 5.03
814 836 0.036022 ACCTCTCTTGCAACAGGAGC 59.964 55.000 17.55 0.00 37.48 4.70
815 837 1.345741 TCACCTCTCTTGCAACAGGAG 59.654 52.381 17.55 12.94 38.65 3.69
816 838 1.070758 GTCACCTCTCTTGCAACAGGA 59.929 52.381 17.55 4.36 0.00 3.86
817 839 1.517242 GTCACCTCTCTTGCAACAGG 58.483 55.000 11.32 11.32 0.00 4.00
818 840 1.143305 CGTCACCTCTCTTGCAACAG 58.857 55.000 0.00 0.00 0.00 3.16
819 841 0.880278 GCGTCACCTCTCTTGCAACA 60.880 55.000 0.00 0.00 0.00 3.33
820 842 0.880278 TGCGTCACCTCTCTTGCAAC 60.880 55.000 0.00 0.00 0.00 4.17
821 843 0.880278 GTGCGTCACCTCTCTTGCAA 60.880 55.000 0.00 0.00 33.67 4.08
822 844 1.300931 GTGCGTCACCTCTCTTGCA 60.301 57.895 0.00 0.00 0.00 4.08
823 845 0.671781 ATGTGCGTCACCTCTCTTGC 60.672 55.000 7.38 0.00 32.73 4.01
824 846 1.073964 CATGTGCGTCACCTCTCTTG 58.926 55.000 7.38 0.00 32.73 3.02
825 847 0.036952 CCATGTGCGTCACCTCTCTT 60.037 55.000 7.38 0.00 32.73 2.85
826 848 0.900182 TCCATGTGCGTCACCTCTCT 60.900 55.000 7.38 0.00 32.73 3.10
827 849 0.176680 ATCCATGTGCGTCACCTCTC 59.823 55.000 7.38 0.00 32.73 3.20
828 850 0.107993 CATCCATGTGCGTCACCTCT 60.108 55.000 7.38 0.00 32.73 3.69
829 851 1.091771 CCATCCATGTGCGTCACCTC 61.092 60.000 7.38 0.00 32.73 3.85
830 852 1.078214 CCATCCATGTGCGTCACCT 60.078 57.895 7.38 0.00 32.73 4.00
831 853 2.114670 CCCATCCATGTGCGTCACC 61.115 63.158 7.38 0.00 32.73 4.02
832 854 0.107897 TACCCATCCATGTGCGTCAC 60.108 55.000 3.44 3.44 34.56 3.67
833 855 0.177836 CTACCCATCCATGTGCGTCA 59.822 55.000 0.00 0.00 0.00 4.35
834 856 0.464036 TCTACCCATCCATGTGCGTC 59.536 55.000 0.00 0.00 0.00 5.19
835 857 1.070758 GATCTACCCATCCATGTGCGT 59.929 52.381 0.00 0.00 0.00 5.24
836 858 1.800805 GATCTACCCATCCATGTGCG 58.199 55.000 0.00 0.00 0.00 5.34
837 859 1.609061 CCGATCTACCCATCCATGTGC 60.609 57.143 0.00 0.00 0.00 4.57
838 860 1.970640 TCCGATCTACCCATCCATGTG 59.029 52.381 0.00 0.00 0.00 3.21
839 861 1.971357 GTCCGATCTACCCATCCATGT 59.029 52.381 0.00 0.00 0.00 3.21
840 862 2.028658 CAGTCCGATCTACCCATCCATG 60.029 54.545 0.00 0.00 0.00 3.66
841 863 2.251818 CAGTCCGATCTACCCATCCAT 58.748 52.381 0.00 0.00 0.00 3.41
842 864 1.704641 CAGTCCGATCTACCCATCCA 58.295 55.000 0.00 0.00 0.00 3.41
843 865 0.318762 GCAGTCCGATCTACCCATCC 59.681 60.000 0.00 0.00 0.00 3.51
844 866 1.271102 GAGCAGTCCGATCTACCCATC 59.729 57.143 0.00 0.00 0.00 3.51
845 867 1.333177 GAGCAGTCCGATCTACCCAT 58.667 55.000 0.00 0.00 0.00 4.00
846 868 0.755698 GGAGCAGTCCGATCTACCCA 60.756 60.000 0.00 0.00 31.37 4.51
847 869 1.465200 GGGAGCAGTCCGATCTACCC 61.465 65.000 0.00 0.00 45.05 3.69
848 870 1.465200 GGGGAGCAGTCCGATCTACC 61.465 65.000 0.00 0.00 45.05 3.18
849 871 2.042800 GGGGAGCAGTCCGATCTAC 58.957 63.158 0.00 0.00 45.05 2.59
850 872 4.601042 GGGGAGCAGTCCGATCTA 57.399 61.111 0.00 0.00 45.05 1.98
862 884 1.439353 CGTTGGATTGATGCGGGGAG 61.439 60.000 0.00 0.00 0.00 4.30
863 885 1.451207 CGTTGGATTGATGCGGGGA 60.451 57.895 0.00 0.00 0.00 4.81
864 886 2.480610 CCGTTGGATTGATGCGGGG 61.481 63.158 0.00 0.00 38.86 5.73
865 887 3.110139 CCGTTGGATTGATGCGGG 58.890 61.111 0.00 0.00 38.86 6.13
866 888 2.114670 AGCCGTTGGATTGATGCGG 61.115 57.895 0.00 0.00 44.60 5.69
867 889 1.063006 CAGCCGTTGGATTGATGCG 59.937 57.895 0.00 0.00 0.00 4.73
887 909 3.051392 GAAAACATCCGCCGCCTGG 62.051 63.158 0.00 0.00 38.77 4.45
888 910 0.742990 TAGAAAACATCCGCCGCCTG 60.743 55.000 0.00 0.00 0.00 4.85
889 911 0.462047 CTAGAAAACATCCGCCGCCT 60.462 55.000 0.00 0.00 0.00 5.52
890 912 0.743345 ACTAGAAAACATCCGCCGCC 60.743 55.000 0.00 0.00 0.00 6.13
891 913 1.084289 AACTAGAAAACATCCGCCGC 58.916 50.000 0.00 0.00 0.00 6.53
892 914 3.493503 GGATAACTAGAAAACATCCGCCG 59.506 47.826 0.00 0.00 0.00 6.46
893 915 4.272748 GTGGATAACTAGAAAACATCCGCC 59.727 45.833 0.00 0.00 39.37 6.13
894 916 4.272748 GGTGGATAACTAGAAAACATCCGC 59.727 45.833 0.00 7.19 42.80 5.54
895 917 4.506654 CGGTGGATAACTAGAAAACATCCG 59.493 45.833 0.00 0.00 38.40 4.18
896 918 4.814771 CCGGTGGATAACTAGAAAACATCC 59.185 45.833 0.00 1.67 36.50 3.51
897 919 4.272748 GCCGGTGGATAACTAGAAAACATC 59.727 45.833 1.90 0.00 0.00 3.06
898 920 4.080526 AGCCGGTGGATAACTAGAAAACAT 60.081 41.667 1.90 0.00 0.00 2.71
899 921 3.262405 AGCCGGTGGATAACTAGAAAACA 59.738 43.478 1.90 0.00 0.00 2.83
900 922 3.621715 CAGCCGGTGGATAACTAGAAAAC 59.378 47.826 1.90 0.00 0.00 2.43
901 923 3.516300 TCAGCCGGTGGATAACTAGAAAA 59.484 43.478 1.90 0.00 0.00 2.29
902 924 3.101437 TCAGCCGGTGGATAACTAGAAA 58.899 45.455 1.90 0.00 0.00 2.52
903 925 2.429610 GTCAGCCGGTGGATAACTAGAA 59.570 50.000 1.90 0.00 0.00 2.10
904 926 2.029623 GTCAGCCGGTGGATAACTAGA 58.970 52.381 1.90 0.00 0.00 2.43
905 927 1.269102 CGTCAGCCGGTGGATAACTAG 60.269 57.143 1.90 0.00 0.00 2.57
906 928 0.742505 CGTCAGCCGGTGGATAACTA 59.257 55.000 1.90 0.00 0.00 2.24
907 929 1.515954 CGTCAGCCGGTGGATAACT 59.484 57.895 1.90 0.00 0.00 2.24
908 930 2.171725 GCGTCAGCCGGTGGATAAC 61.172 63.158 1.90 0.00 37.42 1.89
909 931 2.185867 GCGTCAGCCGGTGGATAA 59.814 61.111 1.90 0.00 37.42 1.75
910 932 4.201679 CGCGTCAGCCGGTGGATA 62.202 66.667 1.90 0.00 41.18 2.59
917 939 3.838795 GTTGCTACGCGTCAGCCG 61.839 66.667 26.56 11.41 41.18 5.52
918 940 3.488090 GGTTGCTACGCGTCAGCC 61.488 66.667 26.56 21.99 41.18 4.85
919 941 3.488090 GGGTTGCTACGCGTCAGC 61.488 66.667 18.63 22.61 39.56 4.26
920 942 2.813908 GGGGTTGCTACGCGTCAG 60.814 66.667 18.63 13.15 38.05 3.51
921 943 4.382320 GGGGGTTGCTACGCGTCA 62.382 66.667 18.63 5.56 38.05 4.35
922 944 2.229690 TTAGGGGGTTGCTACGCGTC 62.230 60.000 18.63 1.99 38.05 5.19
923 945 1.619807 ATTAGGGGGTTGCTACGCGT 61.620 55.000 19.17 19.17 38.05 6.01
924 946 1.145377 ATTAGGGGGTTGCTACGCG 59.855 57.895 3.53 3.53 38.05 6.01
925 947 0.179468 TCATTAGGGGGTTGCTACGC 59.821 55.000 6.81 6.81 36.54 4.42
926 948 2.702592 TTCATTAGGGGGTTGCTACG 57.297 50.000 0.00 0.00 0.00 3.51
927 949 4.072839 GCTATTCATTAGGGGGTTGCTAC 58.927 47.826 0.00 0.00 0.00 3.58
928 950 3.719479 TGCTATTCATTAGGGGGTTGCTA 59.281 43.478 0.00 0.00 0.00 3.49
929 951 2.513738 TGCTATTCATTAGGGGGTTGCT 59.486 45.455 0.00 0.00 0.00 3.91
930 952 2.623416 GTGCTATTCATTAGGGGGTTGC 59.377 50.000 0.00 0.00 0.00 4.17
931 953 3.897239 TGTGCTATTCATTAGGGGGTTG 58.103 45.455 0.00 0.00 0.00 3.77
932 954 4.601406 TTGTGCTATTCATTAGGGGGTT 57.399 40.909 0.00 0.00 0.00 4.11
933 955 4.167892 TGATTGTGCTATTCATTAGGGGGT 59.832 41.667 0.00 0.00 0.00 4.95
934 956 4.728772 TGATTGTGCTATTCATTAGGGGG 58.271 43.478 0.00 0.00 0.00 5.40
935 957 6.713762 TTTGATTGTGCTATTCATTAGGGG 57.286 37.500 0.00 0.00 0.00 4.79
936 958 9.603921 AATTTTTGATTGTGCTATTCATTAGGG 57.396 29.630 0.00 0.00 0.00 3.53
975 997 9.537192 CTTAGGGTACGATATCAACAACATTTA 57.463 33.333 3.12 0.00 0.00 1.40
978 1000 7.356089 TCTTAGGGTACGATATCAACAACAT 57.644 36.000 3.12 0.00 0.00 2.71
979 1001 6.778834 TCTTAGGGTACGATATCAACAACA 57.221 37.500 3.12 0.00 0.00 3.33
980 1002 7.114529 CGAATCTTAGGGTACGATATCAACAAC 59.885 40.741 3.12 0.00 0.00 3.32
982 1004 6.263842 ACGAATCTTAGGGTACGATATCAACA 59.736 38.462 3.12 0.00 0.00 3.33
983 1005 6.581542 CACGAATCTTAGGGTACGATATCAAC 59.418 42.308 3.12 0.15 0.00 3.18
985 1007 5.766670 ACACGAATCTTAGGGTACGATATCA 59.233 40.000 3.12 0.00 0.00 2.15
986 1008 6.084925 CACACGAATCTTAGGGTACGATATC 58.915 44.000 0.00 0.00 0.00 1.63
987 1009 5.533903 ACACACGAATCTTAGGGTACGATAT 59.466 40.000 0.00 0.00 0.00 1.63
988 1010 4.883585 ACACACGAATCTTAGGGTACGATA 59.116 41.667 0.00 0.00 0.00 2.92
989 1011 3.698040 ACACACGAATCTTAGGGTACGAT 59.302 43.478 0.00 0.00 0.00 3.73
990 1012 3.084039 ACACACGAATCTTAGGGTACGA 58.916 45.455 0.00 0.00 0.00 3.43
991 1013 3.498927 ACACACGAATCTTAGGGTACG 57.501 47.619 0.00 0.00 0.00 3.67
992 1014 7.263496 AGATTTACACACGAATCTTAGGGTAC 58.737 38.462 0.00 0.00 39.01 3.34
1008 1049 6.623767 GCCTCTTTGGATTGTGAGATTTACAC 60.624 42.308 0.00 0.00 38.35 2.90
1096 1196 3.019564 GCAGCACACTCCAATCCTATTT 58.980 45.455 0.00 0.00 0.00 1.40
1120 1223 0.469144 TTTTTCTGTCCACTGGGGGC 60.469 55.000 0.00 0.00 43.63 5.80
1121 1224 3.839979 TTTTTCTGTCCACTGGGGG 57.160 52.632 0.00 0.00 37.22 5.40
1139 1242 0.036732 TCGCCTCAATGCCTCTTGTT 59.963 50.000 0.00 0.00 0.00 2.83
1175 1279 1.067250 CGCACACCCACCCAAAAAG 59.933 57.895 0.00 0.00 0.00 2.27
1185 1290 2.743928 CTTCTCTGCCGCACACCC 60.744 66.667 0.00 0.00 0.00 4.61
1186 1291 3.426568 GCTTCTCTGCCGCACACC 61.427 66.667 0.00 0.00 0.00 4.16
1188 1293 2.357881 CTGCTTCTCTGCCGCACA 60.358 61.111 0.00 0.00 0.00 4.57
1189 1294 3.123620 CCTGCTTCTCTGCCGCAC 61.124 66.667 0.00 0.00 0.00 5.34
1203 1308 1.669115 CACGGACTCCACTTGCCTG 60.669 63.158 0.00 0.00 0.00 4.85
1204 1309 2.743718 CACGGACTCCACTTGCCT 59.256 61.111 0.00 0.00 0.00 4.75
1205 1310 2.358737 CCACGGACTCCACTTGCC 60.359 66.667 0.00 0.00 0.00 4.52
1206 1311 2.358737 CCCACGGACTCCACTTGC 60.359 66.667 0.00 0.00 0.00 4.01
1207 1312 1.293498 CTCCCACGGACTCCACTTG 59.707 63.158 0.00 0.00 0.00 3.16
1209 1314 2.283966 CCTCCCACGGACTCCACT 60.284 66.667 0.00 0.00 0.00 4.00
1210 1315 3.391382 CCCTCCCACGGACTCCAC 61.391 72.222 0.00 0.00 0.00 4.02
1211 1316 3.596799 TCCCTCCCACGGACTCCA 61.597 66.667 0.00 0.00 0.00 3.86
1212 1317 3.075641 GTCCCTCCCACGGACTCC 61.076 72.222 0.00 0.00 45.41 3.85
1216 1321 2.283676 GAGTGTCCCTCCCACGGA 60.284 66.667 0.00 0.00 37.88 4.69
1217 1322 2.603473 TGAGTGTCCCTCCCACGG 60.603 66.667 0.00 0.00 39.65 4.94
1219 1324 1.545706 GGTCTGAGTGTCCCTCCCAC 61.546 65.000 0.00 0.00 39.65 4.61
1220 1325 1.229209 GGTCTGAGTGTCCCTCCCA 60.229 63.158 0.00 0.00 39.65 4.37
1221 1326 1.229209 TGGTCTGAGTGTCCCTCCC 60.229 63.158 0.00 0.00 39.65 4.30
1223 1328 0.892063 GTCTGGTCTGAGTGTCCCTC 59.108 60.000 0.00 0.00 40.89 4.30
1224 1329 0.543174 GGTCTGGTCTGAGTGTCCCT 60.543 60.000 0.00 0.00 0.00 4.20
1226 1331 0.318762 GTGGTCTGGTCTGAGTGTCC 59.681 60.000 0.00 0.00 0.00 4.02
1227 1332 0.318762 GGTGGTCTGGTCTGAGTGTC 59.681 60.000 0.00 0.00 0.00 3.67
1228 1333 0.398522 TGGTGGTCTGGTCTGAGTGT 60.399 55.000 0.00 0.00 0.00 3.55
1230 1335 1.476007 GCTGGTGGTCTGGTCTGAGT 61.476 60.000 0.00 0.00 0.00 3.41
1231 1336 1.294780 GCTGGTGGTCTGGTCTGAG 59.705 63.158 0.00 0.00 0.00 3.35
1234 1339 0.837691 TCATGCTGGTGGTCTGGTCT 60.838 55.000 0.00 0.00 0.00 3.85
1235 1340 0.674895 GTCATGCTGGTGGTCTGGTC 60.675 60.000 0.00 0.00 0.00 4.02
1236 1341 1.130054 AGTCATGCTGGTGGTCTGGT 61.130 55.000 0.00 0.00 0.00 4.00
1243 1361 1.448540 GTCGGGAGTCATGCTGGTG 60.449 63.158 0.00 0.00 0.00 4.17
1248 1408 2.187946 CCTGGTCGGGAGTCATGC 59.812 66.667 0.00 0.00 0.00 4.06
1405 1574 2.722201 GCACGGAGGAGGGGTGTAG 61.722 68.421 0.00 0.00 34.25 2.74
1473 1663 3.310774 CACTGCGAAGTTAGCATAGCAAT 59.689 43.478 11.25 0.00 44.26 3.56
1545 1767 5.045578 GGGCCTGCTAATTCTGGAGATTATA 60.046 44.000 0.84 0.00 0.00 0.98
1546 1768 4.263683 GGGCCTGCTAATTCTGGAGATTAT 60.264 45.833 0.84 0.00 0.00 1.28
1547 1769 3.073062 GGGCCTGCTAATTCTGGAGATTA 59.927 47.826 0.84 0.00 0.00 1.75
1548 1770 2.158549 GGGCCTGCTAATTCTGGAGATT 60.159 50.000 0.84 0.00 0.00 2.40
1556 1778 2.800250 AGCATATGGGCCTGCTAATTC 58.200 47.619 16.36 0.00 46.49 2.17
1564 1798 2.967887 GGAAATCAAAGCATATGGGCCT 59.032 45.455 4.53 0.00 0.00 5.19
1565 1799 2.967887 AGGAAATCAAAGCATATGGGCC 59.032 45.455 4.56 0.00 0.00 5.80
1566 1800 3.801293 GCAGGAAATCAAAGCATATGGGC 60.801 47.826 4.56 0.00 0.00 5.36
1567 1801 3.385433 TGCAGGAAATCAAAGCATATGGG 59.615 43.478 4.56 0.00 0.00 4.00
1568 1802 4.617959 CTGCAGGAAATCAAAGCATATGG 58.382 43.478 5.57 0.00 34.35 2.74
1625 1874 3.119849 CCGCTAAATTCTGAACAAGTGGG 60.120 47.826 15.24 6.69 32.27 4.61
1645 1894 9.720769 ATAACCAGATAAACATCTTATAACCCG 57.279 33.333 0.00 0.00 0.00 5.28
1656 1905 4.535781 TGCAGCCATAACCAGATAAACAT 58.464 39.130 0.00 0.00 0.00 2.71
1659 1908 2.951642 GCTGCAGCCATAACCAGATAAA 59.048 45.455 28.76 0.00 34.31 1.40
1675 1924 1.904865 CAAAAGGAGGGCAGCTGCA 60.905 57.895 37.63 0.00 44.36 4.41
1678 1927 1.075659 GGACAAAAGGAGGGCAGCT 59.924 57.895 0.00 0.00 0.00 4.24
1681 1930 1.778383 AGGGGACAAAAGGAGGGCA 60.778 57.895 0.00 0.00 0.00 5.36
1682 1931 1.000771 GAGGGGACAAAAGGAGGGC 60.001 63.158 0.00 0.00 0.00 5.19
1708 1960 4.507756 CAGACAAAGTTTTAGCCTTTTGCC 59.492 41.667 0.00 0.00 42.71 4.52
1732 1985 4.526650 GGTTGGATTGGGTCAATTTACAGT 59.473 41.667 0.00 0.00 33.90 3.55
1733 1986 4.772100 AGGTTGGATTGGGTCAATTTACAG 59.228 41.667 0.00 0.00 33.90 2.74
1734 1987 4.746466 AGGTTGGATTGGGTCAATTTACA 58.254 39.130 0.00 0.00 33.90 2.41
1735 1988 6.682861 GCATAGGTTGGATTGGGTCAATTTAC 60.683 42.308 0.00 0.00 33.90 2.01
1752 2005 0.322322 TTCCGAACACGGCATAGGTT 59.678 50.000 3.67 0.00 45.52 3.50
1758 2011 0.745128 ACTTTGTTCCGAACACGGCA 60.745 50.000 13.61 0.00 45.52 5.69
1759 2012 0.041576 GACTTTGTTCCGAACACGGC 60.042 55.000 13.61 6.64 45.52 5.68
1768 2021 1.206831 GCGCCGAAGACTTTGTTCC 59.793 57.895 0.00 0.00 0.00 3.62
1773 2026 2.649034 TCGAGCGCCGAAGACTTT 59.351 55.556 16.76 0.00 45.43 2.66
1780 2033 4.116328 CAGGAAGTCGAGCGCCGA 62.116 66.667 15.44 15.44 46.35 5.54
1783 2036 0.598680 ATATGCAGGAAGTCGAGCGC 60.599 55.000 0.00 0.00 0.00 5.92
1788 2041 0.032678 AGCCGATATGCAGGAAGTCG 59.967 55.000 0.00 0.00 0.00 4.18
1792 2045 2.418368 AACAAGCCGATATGCAGGAA 57.582 45.000 0.00 0.00 0.00 3.36
1804 2057 4.460873 GTGCGCGCCTAACAAGCC 62.461 66.667 30.77 0.00 0.00 4.35
1824 2077 0.038892 GTTCCGCTGTCAACCGACTA 60.039 55.000 0.00 0.00 43.06 2.59
1834 2087 2.818130 TACGTTTTAGGTTCCGCTGT 57.182 45.000 0.00 0.00 0.00 4.40
1838 2094 4.132529 GTGGTTTACGTTTTAGGTTCCG 57.867 45.455 0.00 0.00 0.00 4.30
1859 2115 2.915463 CAGACAGACGTTAGTAAAGCCG 59.085 50.000 0.00 0.00 0.00 5.52
1863 2119 5.717078 ATGACCAGACAGACGTTAGTAAA 57.283 39.130 0.00 0.00 0.00 2.01
1894 2151 1.539827 GGGACACAAACACTGTATGCC 59.460 52.381 0.00 0.00 35.60 4.40
1933 2190 9.406828 GTTCCATAAAAAGAGGTGTTGTAATTC 57.593 33.333 0.00 0.00 0.00 2.17
1948 2205 9.887629 TGTAGATATGTTACCGTTCCATAAAAA 57.112 29.630 0.00 0.00 0.00 1.94
1949 2206 9.887629 TTGTAGATATGTTACCGTTCCATAAAA 57.112 29.630 0.00 0.00 0.00 1.52
1954 2211 8.262227 AGAAATTGTAGATATGTTACCGTTCCA 58.738 33.333 0.00 0.00 0.00 3.53
1968 2229 6.843333 TCCTGAGATGAGGAGAAATTGTAGAT 59.157 38.462 0.00 0.00 37.20 1.98
1969 2230 6.097554 GTCCTGAGATGAGGAGAAATTGTAGA 59.902 42.308 0.00 0.00 43.11 2.59
1972 2233 4.533707 TGTCCTGAGATGAGGAGAAATTGT 59.466 41.667 0.00 0.00 43.11 2.71
1974 2235 5.013495 TGTTGTCCTGAGATGAGGAGAAATT 59.987 40.000 0.00 0.00 44.64 1.82
2086 2347 4.813526 CTCGACGGCGTGTCCTCG 62.814 72.222 21.19 15.18 45.23 4.63
2090 2351 4.702081 ACTGCTCGACGGCGTGTC 62.702 66.667 21.19 2.07 44.53 3.67
2101 2362 1.421410 CGTTCGCATACCCACTGCTC 61.421 60.000 0.00 0.00 37.48 4.26
2184 2445 0.747283 AGTAGTAGCCCTGTCGTCCG 60.747 60.000 0.00 0.00 0.00 4.79
2186 2447 0.100861 GCAGTAGTAGCCCTGTCGTC 59.899 60.000 0.00 0.00 0.00 4.20
2203 2464 3.243569 CCATTTTTAGGTTGACGTTGGCA 60.244 43.478 0.00 0.00 0.00 4.92
2210 2471 9.178758 AGATATCTTGACCATTTTTAGGTTGAC 57.821 33.333 0.00 0.00 40.09 3.18
2217 2478 8.677300 GCTTGTCAGATATCTTGACCATTTTTA 58.323 33.333 22.02 8.10 0.00 1.52
2251 2512 1.608025 GGCTTGTCGACCATGAAGACA 60.608 52.381 14.12 11.86 42.36 3.41
2353 2614 4.779966 TCCGCGTCCGCTCTCTCT 62.780 66.667 4.92 0.00 39.32 3.10
2451 2736 4.813027 AGCAAGTGCCAAGTTAAATCATG 58.187 39.130 0.00 0.00 43.38 3.07
2558 2879 3.432252 CAGACGGTGTGGATTTCACTAAC 59.568 47.826 0.00 0.00 46.20 2.34
2576 2897 6.575162 ACAACCTCACCAATTTTATCAGAC 57.425 37.500 0.00 0.00 0.00 3.51
2581 2902 5.806654 AGCAACAACCTCACCAATTTTAT 57.193 34.783 0.00 0.00 0.00 1.40
2582 2903 6.716934 TTAGCAACAACCTCACCAATTTTA 57.283 33.333 0.00 0.00 0.00 1.52
2715 3036 6.833342 ATGTCAAATTTGCAGAAAAGTGAC 57.167 33.333 13.54 11.39 42.11 3.67
2719 3040 8.400186 AGGAAAAATGTCAAATTTGCAGAAAAG 58.600 29.630 13.54 0.00 0.00 2.27
2737 3058 7.593825 CCGTTAAGACATGAAAGAGGAAAAAT 58.406 34.615 0.00 0.00 0.00 1.82
2784 3128 1.131638 TACATGACATCAGGAGGGGC 58.868 55.000 0.00 0.00 0.00 5.80
2845 3248 0.662619 TCAACTCTGCAAGCAAACCG 59.337 50.000 0.00 0.00 0.00 4.44
2864 3267 3.882888 ACACAATCATTTCCAAGTGTCGT 59.117 39.130 0.00 0.00 35.50 4.34
2992 3395 1.927895 AGTCATCGATCTTTCGGCAC 58.072 50.000 0.00 0.00 45.53 5.01
3028 3431 1.805945 CACCAACGCGGAGTCTAGC 60.806 63.158 12.47 0.00 38.63 3.42
3114 3517 3.275338 GCCAGTATGCAGAGCGCC 61.275 66.667 2.29 0.00 41.33 6.53
3120 3523 2.634815 AGAAGGATGCCAGTATGCAG 57.365 50.000 0.00 0.00 45.93 4.41
3121 3524 3.282021 GAAAGAAGGATGCCAGTATGCA 58.718 45.455 0.00 0.00 46.94 3.96
3122 3525 2.620585 GGAAAGAAGGATGCCAGTATGC 59.379 50.000 0.00 0.00 31.97 3.14
3123 3526 3.217626 GGGAAAGAAGGATGCCAGTATG 58.782 50.000 0.00 0.00 0.00 2.39
3129 3532 2.744352 AGATGGGAAAGAAGGATGCC 57.256 50.000 0.00 0.00 0.00 4.40
3130 3533 3.766051 ACAAAGATGGGAAAGAAGGATGC 59.234 43.478 0.00 0.00 0.00 3.91
3134 3537 5.302823 AGTGAAACAAAGATGGGAAAGAAGG 59.697 40.000 0.00 0.00 41.43 3.46
3153 3556 9.462174 GATTTTGTGATGAAATTGTACAGTGAA 57.538 29.630 0.00 0.00 0.00 3.18
3157 3560 8.702438 GTTGGATTTTGTGATGAAATTGTACAG 58.298 33.333 0.00 0.00 0.00 2.74
3159 3562 8.586570 TGTTGGATTTTGTGATGAAATTGTAC 57.413 30.769 0.00 0.00 0.00 2.90
3160 3563 9.775854 AATGTTGGATTTTGTGATGAAATTGTA 57.224 25.926 0.00 0.00 0.00 2.41
3161 3564 8.680039 AATGTTGGATTTTGTGATGAAATTGT 57.320 26.923 0.00 0.00 0.00 2.71
3162 3565 8.995220 AGAATGTTGGATTTTGTGATGAAATTG 58.005 29.630 0.00 0.00 0.00 2.32
3163 3566 8.995220 CAGAATGTTGGATTTTGTGATGAAATT 58.005 29.630 0.00 0.00 0.00 1.82
3167 3570 5.010820 TGCAGAATGTTGGATTTTGTGATGA 59.989 36.000 0.00 0.00 39.31 2.92
3168 3571 5.231702 TGCAGAATGTTGGATTTTGTGATG 58.768 37.500 0.00 0.00 39.31 3.07
3169 3572 5.471556 TGCAGAATGTTGGATTTTGTGAT 57.528 34.783 0.00 0.00 39.31 3.06
3170 3573 4.262121 CCTGCAGAATGTTGGATTTTGTGA 60.262 41.667 17.39 0.00 39.31 3.58
3171 3574 3.991773 CCTGCAGAATGTTGGATTTTGTG 59.008 43.478 17.39 0.00 39.31 3.33
3172 3575 3.555586 GCCTGCAGAATGTTGGATTTTGT 60.556 43.478 17.39 0.00 39.31 2.83
3173 3576 2.997986 GCCTGCAGAATGTTGGATTTTG 59.002 45.455 17.39 0.00 39.31 2.44
3174 3577 2.633967 TGCCTGCAGAATGTTGGATTTT 59.366 40.909 17.39 0.00 39.31 1.82
3175 3578 2.250031 TGCCTGCAGAATGTTGGATTT 58.750 42.857 17.39 0.00 39.31 2.17
3178 3581 1.702182 TTTGCCTGCAGAATGTTGGA 58.298 45.000 17.39 0.00 39.31 3.53
3309 3720 0.439985 CGTCATTCAACGCACTCAGG 59.560 55.000 0.00 0.00 35.64 3.86
3436 3847 4.288366 TCCACCAGGTTATGTCAAATCAGA 59.712 41.667 0.00 0.00 35.89 3.27
3438 3849 4.649267 TCCACCAGGTTATGTCAAATCA 57.351 40.909 0.00 0.00 35.89 2.57
3596 4007 6.049149 GGTATTGATCCTTGATCGTCTTCAA 58.951 40.000 0.00 0.00 41.51 2.69
3637 4048 2.887152 GCCACAACCTTTCTTGATGACT 59.113 45.455 0.00 0.00 0.00 3.41
3651 4062 0.034337 TAGGAACGTGAGGCCACAAC 59.966 55.000 3.76 0.00 43.34 3.32
3658 4069 2.230508 TGCAGTTACTAGGAACGTGAGG 59.769 50.000 12.25 2.73 34.36 3.86
3665 4076 3.767673 CCCTGTAGTGCAGTTACTAGGAA 59.232 47.826 18.30 0.00 43.55 3.36
3673 4084 2.840038 TGATGATCCCTGTAGTGCAGTT 59.160 45.455 7.50 0.00 43.55 3.16
3675 4086 3.324268 AGATGATGATCCCTGTAGTGCAG 59.676 47.826 0.47 0.47 44.63 4.41
3679 4090 4.964897 TGTTCAGATGATGATCCCTGTAGT 59.035 41.667 10.36 0.00 37.89 2.73
3685 4096 3.881688 CCTGTTGTTCAGATGATGATCCC 59.118 47.826 0.00 0.00 46.27 3.85
3687 4098 5.238868 CCATCCTGTTGTTCAGATGATGATC 59.761 44.000 12.26 0.00 46.27 2.92
3690 4101 3.066342 GCCATCCTGTTGTTCAGATGATG 59.934 47.826 0.00 0.00 46.27 3.07
3734 4152 2.996395 CTGCCATGGACAGGAGCT 59.004 61.111 18.40 0.00 0.00 4.09
3735 4153 2.827642 GCTGCCATGGACAGGAGC 60.828 66.667 26.99 15.21 35.62 4.70
3736 4154 1.451567 CAGCTGCCATGGACAGGAG 60.452 63.158 26.99 10.15 35.62 3.69
3737 4155 2.672908 CAGCTGCCATGGACAGGA 59.327 61.111 26.99 0.37 35.62 3.86
3738 4156 2.439701 CCAGCTGCCATGGACAGG 60.440 66.667 26.99 14.69 40.51 4.00
3739 4157 2.439701 CCCAGCTGCCATGGACAG 60.440 66.667 23.86 23.86 40.51 3.51
3744 4174 0.245539 CTTTGTTCCCAGCTGCCATG 59.754 55.000 8.66 0.00 0.00 3.66
3750 4180 1.999648 TGCATTCTTTGTTCCCAGCT 58.000 45.000 0.00 0.00 0.00 4.24
3759 4189 6.906659 AGTCTGTGAAGTATTGCATTCTTTG 58.093 36.000 0.00 0.00 0.00 2.77
3760 4190 8.621532 TTAGTCTGTGAAGTATTGCATTCTTT 57.378 30.769 0.00 0.00 0.00 2.52
3780 4210 2.801063 TGCGCCGTACTGTATTTAGTC 58.199 47.619 4.18 0.00 32.19 2.59
3781 4211 2.945447 TGCGCCGTACTGTATTTAGT 57.055 45.000 4.18 0.00 34.71 2.24
3782 4212 4.980434 ACTTATGCGCCGTACTGTATTTAG 59.020 41.667 4.18 0.00 0.00 1.85
3783 4213 4.741185 CACTTATGCGCCGTACTGTATTTA 59.259 41.667 4.18 0.00 0.00 1.40
3784 4214 3.554324 CACTTATGCGCCGTACTGTATTT 59.446 43.478 4.18 0.00 0.00 1.40
3785 4215 3.120792 CACTTATGCGCCGTACTGTATT 58.879 45.455 4.18 0.00 0.00 1.89
3787 4217 1.744522 TCACTTATGCGCCGTACTGTA 59.255 47.619 4.18 0.00 0.00 2.74
3790 4226 2.201732 CAATCACTTATGCGCCGTACT 58.798 47.619 4.18 0.00 0.00 2.73
3797 4233 4.270808 TCACATGCTACAATCACTTATGCG 59.729 41.667 0.00 0.00 0.00 4.73
3814 4250 6.767423 TGAAACCTACATCCATACATCACATG 59.233 38.462 0.00 0.00 0.00 3.21
3815 4251 6.767902 GTGAAACCTACATCCATACATCACAT 59.232 38.462 0.00 0.00 34.95 3.21
3845 4281 3.370209 GGTTGAGGGGGTAAGACATACAC 60.370 52.174 0.00 0.00 37.18 2.90
3858 4295 0.030092 TCTATGGGGAGGTTGAGGGG 60.030 60.000 0.00 0.00 0.00 4.79
3913 4351 4.155709 TCAGTGTCCTCTTCAGATTCTGT 58.844 43.478 13.23 0.00 32.61 3.41
4028 4466 9.390795 CTTCAAATTCACTCACTTTTATGTCAG 57.609 33.333 0.00 0.00 0.00 3.51
4091 4529 3.660865 ACTCCACCTTCACGTAAATGAC 58.339 45.455 0.00 0.00 0.00 3.06
4114 4552 3.243359 TCAGGCAGATTCCCAAACTTT 57.757 42.857 0.00 0.00 0.00 2.66
4222 4764 9.197694 CTATATGTGATACAGTTCTTTACCTGC 57.802 37.037 0.00 0.00 0.00 4.85
4241 4783 8.414629 TCAGATCAACATCAGCTACTATATGT 57.585 34.615 0.00 0.00 34.11 2.29
4242 4784 9.702494 TTTCAGATCAACATCAGCTACTATATG 57.298 33.333 0.00 0.00 0.00 1.78
4244 4786 9.920133 GATTTCAGATCAACATCAGCTACTATA 57.080 33.333 0.00 0.00 0.00 1.31
4286 4828 5.482908 TCTTTATGACCTCTCAAGCTGAAC 58.517 41.667 0.00 0.00 0.00 3.18
4348 4893 4.832823 TCTAGACACATTGAAGTCTGGTGA 59.167 41.667 19.49 13.99 44.32 4.02
4349 4894 5.139435 TCTAGACACATTGAAGTCTGGTG 57.861 43.478 19.49 12.64 44.32 4.17
4350 4895 5.540337 TCTTCTAGACACATTGAAGTCTGGT 59.460 40.000 19.49 4.25 44.32 4.00
4375 4920 7.882271 GCTGACCCTAAGATGATTATTCATTCT 59.118 37.037 1.82 0.00 42.73 2.40
4384 4929 4.192317 GTTTCGCTGACCCTAAGATGATT 58.808 43.478 0.00 0.00 0.00 2.57
4398 4944 3.767900 CGATGTCGATGTTTCGCTG 57.232 52.632 0.00 0.00 45.10 5.18
4413 4959 1.406539 GATTTGCATGGTCAAGGCGAT 59.593 47.619 0.00 0.00 0.00 4.58
4417 4963 4.987408 TGTATGATTTGCATGGTCAAGG 57.013 40.909 0.00 0.00 37.87 3.61
4519 5066 8.409358 TCTAAAGGGAGAAAAGAAAAAGGATG 57.591 34.615 0.00 0.00 0.00 3.51
4541 5088 3.998913 TGTTGATTGAGGCCACATCTA 57.001 42.857 5.01 0.00 0.00 1.98
4542 5089 2.885135 TGTTGATTGAGGCCACATCT 57.115 45.000 5.01 0.00 0.00 2.90
4543 5090 3.018856 TGATGTTGATTGAGGCCACATC 58.981 45.455 18.53 18.53 34.73 3.06
4544 5091 3.090210 TGATGTTGATTGAGGCCACAT 57.910 42.857 5.01 3.47 0.00 3.21
4545 5092 2.583024 TGATGTTGATTGAGGCCACA 57.417 45.000 5.01 0.25 0.00 4.17
4546 5093 3.194116 ACAATGATGTTGATTGAGGCCAC 59.806 43.478 5.01 0.00 35.91 5.01
4547 5094 3.433343 ACAATGATGTTGATTGAGGCCA 58.567 40.909 5.01 0.00 35.91 5.36
4549 5096 4.707030 TGACAATGATGTTGATTGAGGC 57.293 40.909 0.00 0.00 40.74 4.70
4551 5098 5.100259 GGCTTGACAATGATGTTGATTGAG 58.900 41.667 0.00 0.00 40.74 3.02
4552 5099 4.523558 TGGCTTGACAATGATGTTGATTGA 59.476 37.500 0.00 0.00 40.74 2.57
4553 5100 4.811908 TGGCTTGACAATGATGTTGATTG 58.188 39.130 0.00 0.00 40.74 2.67
4554 5101 5.221481 TGTTGGCTTGACAATGATGTTGATT 60.221 36.000 0.00 0.00 40.74 2.57
4555 5102 4.281435 TGTTGGCTTGACAATGATGTTGAT 59.719 37.500 0.00 0.00 40.74 2.57
4599 5146 6.531240 TGAAAGAGCACAATGTTTGAACTTTC 59.469 34.615 0.00 0.00 38.11 2.62
4600 5147 6.397272 TGAAAGAGCACAATGTTTGAACTTT 58.603 32.000 0.00 0.00 0.00 2.66
4608 5155 4.022849 GCCTAACTGAAAGAGCACAATGTT 60.023 41.667 0.00 0.00 37.43 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.