Multiple sequence alignment - TraesCS1B01G001500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G001500 chr1B 100.000 3938 0 0 448 4385 1415574 1419511 0.000000e+00 7273.0
1 TraesCS1B01G001500 chr1B 100.000 37 0 0 1 37 1415127 1415163 7.870000e-08 69.4
2 TraesCS1B01G001500 chr1D 89.873 1185 88 13 448 1627 2109477 2110634 0.000000e+00 1495.0
3 TraesCS1B01G001500 chr1D 86.462 1300 95 38 3109 4385 2111955 2113196 0.000000e+00 1351.0
4 TraesCS1B01G001500 chr1D 92.361 576 41 3 2431 3004 2111377 2111951 0.000000e+00 817.0
5 TraesCS1B01G001500 chr1D 88.928 569 56 6 1651 2217 2110620 2111183 0.000000e+00 695.0
6 TraesCS1B01G001500 chr1A 89.646 1188 79 21 448 1627 1205885 1207036 0.000000e+00 1472.0
7 TraesCS1B01G001500 chr1A 92.715 906 43 15 3109 4011 1208629 1209514 0.000000e+00 1286.0
8 TraesCS1B01G001500 chr1A 90.712 646 43 6 2374 3004 1207992 1208635 0.000000e+00 845.0
9 TraesCS1B01G001500 chr1A 86.316 570 58 11 1651 2217 1207022 1207574 1.740000e-168 603.0
10 TraesCS1B01G001500 chr1A 88.319 351 21 7 4053 4385 1209619 1209967 1.900000e-108 403.0
11 TraesCS1B01G001500 chr7D 80.268 522 83 14 1822 2334 530403548 530404058 4.140000e-100 375.0
12 TraesCS1B01G001500 chr7D 96.262 107 4 0 3006 3112 423305078 423304972 4.510000e-40 176.0
13 TraesCS1B01G001500 chr7D 85.393 89 11 1 2375 2461 530404203 530404291 1.680000e-14 91.6
14 TraesCS1B01G001500 chr3A 77.532 316 71 0 1088 1403 1927290 1926975 1.610000e-44 191.0
15 TraesCS1B01G001500 chr3A 97.222 108 3 0 2998 3105 70862573 70862680 2.690000e-42 183.0
16 TraesCS1B01G001500 chr3A 99.000 100 1 0 3006 3105 697472445 697472346 3.480000e-41 180.0
17 TraesCS1B01G001500 chr3D 77.160 324 70 4 1082 1403 2141164 2141485 7.490000e-43 185.0
18 TraesCS1B01G001500 chr3B 77.090 323 72 2 1082 1403 4324639 4324960 7.490000e-43 185.0
19 TraesCS1B01G001500 chr6A 94.915 118 2 3 2992 3105 579148334 579148217 9.690000e-42 182.0
20 TraesCS1B01G001500 chr6A 94.643 112 6 0 3002 3113 379262420 379262309 1.620000e-39 174.0
21 TraesCS1B01G001500 chr2D 98.058 103 2 0 3003 3105 326217477 326217579 3.480000e-41 180.0
22 TraesCS1B01G001500 chrUn 92.683 123 7 2 3000 3120 94014621 94014499 4.510000e-40 176.0
23 TraesCS1B01G001500 chr7A 94.595 111 6 0 3000 3110 729073217 729073327 5.830000e-39 172.0
24 TraesCS1B01G001500 chr4A 91.803 122 10 0 2984 3105 583871597 583871476 2.100000e-38 171.0
25 TraesCS1B01G001500 chr5B 78.661 239 41 9 1135 1368 589229720 589229487 2.730000e-32 150.0
26 TraesCS1B01G001500 chr5A 78.661 239 41 9 1135 1368 599979601 599979368 2.730000e-32 150.0
27 TraesCS1B01G001500 chr5D 77.731 238 43 9 1136 1368 480751841 480751609 2.130000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G001500 chr1B 1415127 1419511 4384 False 3671.2 7273 100.0000 1 4385 2 chr1B.!!$F1 4384
1 TraesCS1B01G001500 chr1D 2109477 2113196 3719 False 1089.5 1495 89.4060 448 4385 4 chr1D.!!$F1 3937
2 TraesCS1B01G001500 chr1A 1205885 1209967 4082 False 921.8 1472 89.5416 448 4385 5 chr1A.!!$F1 3937
3 TraesCS1B01G001500 chr7D 530403548 530404291 743 False 233.3 375 82.8305 1822 2461 2 chr7D.!!$F1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 837 1.075425 CGCCGTTCTCTTCAGAGCTG 61.075 60.0 0.00 0.0 41.80 4.24 F
1728 1739 0.041535 TTGCAGGCCATCCAAGGATT 59.958 50.0 5.01 0.0 31.62 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 2066 0.391130 TGCCACTTGACGCATACTCC 60.391 55.0 0.0 0.0 0.0 3.85 R
3521 3978 0.100682 TACATCTTCCTCGCTCGTGC 59.899 55.0 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
731 732 2.507324 GTGCTCGCCTTCCTCGTC 60.507 66.667 0.00 0.00 0.00 4.20
833 837 1.075425 CGCCGTTCTCTTCAGAGCTG 61.075 60.000 0.00 0.00 41.80 4.24
874 878 6.644181 GGTAACTAACAGTAGTTCAACCTCAC 59.356 42.308 2.52 0.00 45.63 3.51
884 888 1.953559 TCAACCTCACTGTGCTGAAC 58.046 50.000 2.12 0.00 0.00 3.18
885 889 1.486310 TCAACCTCACTGTGCTGAACT 59.514 47.619 2.12 0.00 0.00 3.01
886 890 1.869767 CAACCTCACTGTGCTGAACTC 59.130 52.381 2.12 0.00 0.00 3.01
887 891 1.418334 ACCTCACTGTGCTGAACTCT 58.582 50.000 2.12 0.00 0.00 3.24
914 918 1.690893 AGTGCACACTCACTGACTCAT 59.309 47.619 21.04 0.00 44.88 2.90
915 919 2.103771 AGTGCACACTCACTGACTCATT 59.896 45.455 21.04 0.00 44.88 2.57
916 920 2.478134 GTGCACACTCACTGACTCATTC 59.522 50.000 13.17 0.00 34.29 2.67
917 921 1.723542 GCACACTCACTGACTCATTCG 59.276 52.381 0.00 0.00 0.00 3.34
918 922 2.332104 CACACTCACTGACTCATTCGG 58.668 52.381 0.00 0.00 36.55 4.30
930 934 2.828520 ACTCATTCGGTCAGTCAGTCAT 59.171 45.455 0.00 0.00 0.00 3.06
943 947 7.921745 GGTCAGTCAGTCATTCTTATACCTAAC 59.078 40.741 0.00 0.00 0.00 2.34
944 948 7.921745 GTCAGTCAGTCATTCTTATACCTAACC 59.078 40.741 0.00 0.00 0.00 2.85
945 949 7.839705 TCAGTCAGTCATTCTTATACCTAACCT 59.160 37.037 0.00 0.00 0.00 3.50
946 950 9.132923 CAGTCAGTCATTCTTATACCTAACCTA 57.867 37.037 0.00 0.00 0.00 3.08
947 951 9.710818 AGTCAGTCATTCTTATACCTAACCTAA 57.289 33.333 0.00 0.00 0.00 2.69
948 952 9.968870 GTCAGTCATTCTTATACCTAACCTAAG 57.031 37.037 0.00 0.00 0.00 2.18
949 953 8.639761 TCAGTCATTCTTATACCTAACCTAAGC 58.360 37.037 0.00 0.00 0.00 3.09
950 954 8.421784 CAGTCATTCTTATACCTAACCTAAGCA 58.578 37.037 0.00 0.00 0.00 3.91
1041 1045 0.391597 CCGTCCACACCAACTACAGT 59.608 55.000 0.00 0.00 0.00 3.55
1050 1054 1.301716 CAACTACAGTGCCGGCAGT 60.302 57.895 33.73 32.38 0.00 4.40
1053 1057 3.665675 CTACAGTGCCGGCAGTCCC 62.666 68.421 33.82 20.24 0.00 4.46
1063 1067 1.973812 GGCAGTCCCAGGCTGAAAC 60.974 63.158 17.94 13.29 36.12 2.78
1116 1120 1.732732 CGCTTCTTCACGTACCAGGAG 60.733 57.143 0.00 0.00 0.00 3.69
1179 1183 3.082055 GAGGGAGGGTTCGGGTCC 61.082 72.222 0.00 0.00 0.00 4.46
1239 1243 1.203441 TCAAGCAGCTGAGGGATGGT 61.203 55.000 20.43 0.00 44.28 3.55
1311 1315 1.184322 TGCATCACCGGCATTTGGTT 61.184 50.000 0.00 0.00 37.72 3.67
1317 1321 1.613437 CACCGGCATTTGGTTTCTCTT 59.387 47.619 0.00 0.00 37.72 2.85
1320 1324 2.351738 CCGGCATTTGGTTTCTCTTGTC 60.352 50.000 0.00 0.00 0.00 3.18
1332 1336 1.476891 TCTCTTGTCGGGTACTGCATC 59.523 52.381 0.00 0.00 32.53 3.91
1422 1429 5.458015 GGTACGCTTCTTAACATTTTGCTT 58.542 37.500 0.00 0.00 0.00 3.91
1434 1441 5.564048 ACATTTTGCTTTGTTTGTGCAAT 57.436 30.435 0.00 0.00 44.55 3.56
1473 1483 4.150897 ACTTCTGGCTGTACAAACTGAA 57.849 40.909 14.06 14.06 0.00 3.02
1485 1495 7.441890 TGTACAAACTGAAGTTGTTCTGAAA 57.558 32.000 0.00 0.00 38.44 2.69
1497 1507 3.669536 TGTTCTGAAATGTATGCGACCA 58.330 40.909 0.00 0.00 0.00 4.02
1571 1581 1.519234 TGCTGCTCGTGGAATAGCG 60.519 57.895 0.00 0.00 41.77 4.26
1603 1614 7.220300 GCATGAAGATTGTAATGCTCTTTCTTG 59.780 37.037 0.00 0.00 41.71 3.02
1606 1617 4.400567 AGATTGTAATGCTCTTTCTTGCCC 59.599 41.667 0.00 0.00 0.00 5.36
1610 1621 4.588528 TGTAATGCTCTTTCTTGCCCTTTT 59.411 37.500 0.00 0.00 0.00 2.27
1611 1622 3.949842 ATGCTCTTTCTTGCCCTTTTC 57.050 42.857 0.00 0.00 0.00 2.29
1612 1623 2.665165 TGCTCTTTCTTGCCCTTTTCA 58.335 42.857 0.00 0.00 0.00 2.69
1613 1624 3.233507 TGCTCTTTCTTGCCCTTTTCAT 58.766 40.909 0.00 0.00 0.00 2.57
1614 1625 3.642848 TGCTCTTTCTTGCCCTTTTCATT 59.357 39.130 0.00 0.00 0.00 2.57
1615 1626 4.832266 TGCTCTTTCTTGCCCTTTTCATTA 59.168 37.500 0.00 0.00 0.00 1.90
1616 1627 5.481473 TGCTCTTTCTTGCCCTTTTCATTAT 59.519 36.000 0.00 0.00 0.00 1.28
1617 1628 6.014327 TGCTCTTTCTTGCCCTTTTCATTATT 60.014 34.615 0.00 0.00 0.00 1.40
1618 1629 6.875726 GCTCTTTCTTGCCCTTTTCATTATTT 59.124 34.615 0.00 0.00 0.00 1.40
1619 1630 7.388776 GCTCTTTCTTGCCCTTTTCATTATTTT 59.611 33.333 0.00 0.00 0.00 1.82
1620 1631 8.831715 TCTTTCTTGCCCTTTTCATTATTTTC 57.168 30.769 0.00 0.00 0.00 2.29
1621 1632 7.877612 TCTTTCTTGCCCTTTTCATTATTTTCC 59.122 33.333 0.00 0.00 0.00 3.13
1622 1633 6.048732 TCTTGCCCTTTTCATTATTTTCCC 57.951 37.500 0.00 0.00 0.00 3.97
1623 1634 4.835284 TGCCCTTTTCATTATTTTCCCC 57.165 40.909 0.00 0.00 0.00 4.81
1624 1635 4.171234 TGCCCTTTTCATTATTTTCCCCA 58.829 39.130 0.00 0.00 0.00 4.96
1625 1636 4.787534 TGCCCTTTTCATTATTTTCCCCAT 59.212 37.500 0.00 0.00 0.00 4.00
1626 1637 5.252630 TGCCCTTTTCATTATTTTCCCCATT 59.747 36.000 0.00 0.00 0.00 3.16
1627 1638 6.445139 TGCCCTTTTCATTATTTTCCCCATTA 59.555 34.615 0.00 0.00 0.00 1.90
1628 1639 6.765989 GCCCTTTTCATTATTTTCCCCATTAC 59.234 38.462 0.00 0.00 0.00 1.89
1629 1640 7.365563 GCCCTTTTCATTATTTTCCCCATTACT 60.366 37.037 0.00 0.00 0.00 2.24
1630 1641 8.548025 CCCTTTTCATTATTTTCCCCATTACTT 58.452 33.333 0.00 0.00 0.00 2.24
1631 1642 9.958180 CCTTTTCATTATTTTCCCCATTACTTT 57.042 29.630 0.00 0.00 0.00 2.66
1641 1652 9.913310 ATTTTCCCCATTACTTTTTGAGAAAAA 57.087 25.926 0.00 0.00 37.99 1.94
1682 1693 5.348164 CCCATTTATCATTCCGGTTTTGTC 58.652 41.667 0.00 0.00 0.00 3.18
1683 1694 5.348164 CCATTTATCATTCCGGTTTTGTCC 58.652 41.667 0.00 0.00 0.00 4.02
1689 1700 3.073356 TCATTCCGGTTTTGTCCTAACCT 59.927 43.478 0.00 0.00 42.31 3.50
1696 1707 0.476338 TTTGTCCTAACCTGGCTGCA 59.524 50.000 0.50 0.00 0.00 4.41
1728 1739 0.041535 TTGCAGGCCATCCAAGGATT 59.958 50.000 5.01 0.00 31.62 3.01
1731 1742 2.091166 TGCAGGCCATCCAAGGATTATT 60.091 45.455 5.01 0.00 31.62 1.40
1800 1811 1.463674 CACTGGTAACTGCATTCCCC 58.536 55.000 0.00 0.00 39.52 4.81
1810 1821 1.205417 CTGCATTCCCCAAATGTGTCC 59.795 52.381 0.00 0.00 45.55 4.02
1816 1827 1.165270 CCCCAAATGTGTCCGAGAAC 58.835 55.000 0.00 0.00 0.00 3.01
1822 1833 3.961480 AATGTGTCCGAGAACATCTCA 57.039 42.857 8.02 0.00 43.55 3.27
1823 1834 4.478206 AATGTGTCCGAGAACATCTCAT 57.522 40.909 8.02 0.00 43.55 2.90
1879 1891 4.499696 CCATGAATTTAGGTGGCCGATTTC 60.500 45.833 0.00 0.00 0.00 2.17
1918 1931 1.507562 TGGACGCTGTAACACATGTG 58.492 50.000 24.25 24.25 0.00 3.21
1950 1963 2.562953 TGGGGACATTTGGGTGAGT 58.437 52.632 0.00 0.00 33.40 3.41
1954 1967 3.117093 TGGGGACATTTGGGTGAGTAAAA 60.117 43.478 0.00 0.00 33.40 1.52
1955 1968 3.898741 GGGGACATTTGGGTGAGTAAAAA 59.101 43.478 0.00 0.00 0.00 1.94
1956 1969 4.021456 GGGGACATTTGGGTGAGTAAAAAG 60.021 45.833 0.00 0.00 0.00 2.27
1957 1970 4.587262 GGGACATTTGGGTGAGTAAAAAGT 59.413 41.667 0.00 0.00 0.00 2.66
1958 1971 5.771165 GGGACATTTGGGTGAGTAAAAAGTA 59.229 40.000 0.00 0.00 0.00 2.24
1959 1972 6.436218 GGGACATTTGGGTGAGTAAAAAGTAT 59.564 38.462 0.00 0.00 0.00 2.12
1960 1973 7.312899 GGACATTTGGGTGAGTAAAAAGTATG 58.687 38.462 0.00 0.00 0.00 2.39
1961 1974 7.039993 GGACATTTGGGTGAGTAAAAAGTATGT 60.040 37.037 0.00 0.00 0.00 2.29
1973 1986 9.334693 GAGTAAAAAGTATGTGCAAATTCAGAG 57.665 33.333 0.00 0.00 0.00 3.35
1985 1998 3.512033 AATTCAGAGGCGTCTACTGTC 57.488 47.619 8.91 0.00 33.93 3.51
1986 1999 2.201921 TTCAGAGGCGTCTACTGTCT 57.798 50.000 8.91 0.00 33.93 3.41
1988 2001 2.515854 TCAGAGGCGTCTACTGTCTTT 58.484 47.619 8.91 0.00 33.93 2.52
2050 2066 1.202568 TCTTGCAGATACATGGCTCCG 60.203 52.381 0.00 0.00 0.00 4.63
2071 2087 1.394917 GAGTATGCGTCAAGTGGCAAG 59.605 52.381 0.00 0.00 43.26 4.01
2086 2102 1.742268 GGCAAGCTGACTGAGAAATCC 59.258 52.381 0.00 0.00 0.00 3.01
2107 2123 3.303990 CCGATGTGTTCTCTTTTGGTGTG 60.304 47.826 0.00 0.00 0.00 3.82
2113 2129 5.104859 TGTGTTCTCTTTTGGTGTGGTACTA 60.105 40.000 0.00 0.00 0.00 1.82
2143 2160 0.033504 TGACTGGTCGAAAGCCTGTC 59.966 55.000 18.15 18.15 46.16 3.51
2188 2205 1.623811 GAGAGCCTTGTTGAGTGGGTA 59.376 52.381 0.00 0.00 0.00 3.69
2207 2224 6.092259 GTGGGTAAGTTATAGCACTCAACTTG 59.908 42.308 15.41 0.00 41.36 3.16
2217 2234 3.316308 AGCACTCAACTTGTTGCCTAAAG 59.684 43.478 8.48 3.69 0.00 1.85
2218 2235 3.315191 GCACTCAACTTGTTGCCTAAAGA 59.685 43.478 8.48 0.00 0.00 2.52
2219 2236 4.202010 GCACTCAACTTGTTGCCTAAAGAA 60.202 41.667 8.48 0.00 0.00 2.52
2220 2237 5.678616 GCACTCAACTTGTTGCCTAAAGAAA 60.679 40.000 8.48 0.00 0.00 2.52
2221 2238 6.507023 CACTCAACTTGTTGCCTAAAGAAAT 58.493 36.000 8.48 0.00 0.00 2.17
2229 2246 5.841810 TGTTGCCTAAAGAAATTGTTCCTG 58.158 37.500 0.00 0.00 33.92 3.86
2230 2247 5.362430 TGTTGCCTAAAGAAATTGTTCCTGT 59.638 36.000 0.00 0.00 33.92 4.00
2271 2428 5.243954 AGAACAGTCATGCAGTACAGACTTA 59.756 40.000 0.00 0.00 35.74 2.24
2272 2429 4.810790 ACAGTCATGCAGTACAGACTTAC 58.189 43.478 0.00 0.00 35.74 2.34
2280 2437 3.548268 GCAGTACAGACTTACTTCATCGC 59.452 47.826 0.00 0.00 31.73 4.58
2283 2440 5.230936 CAGTACAGACTTACTTCATCGCATG 59.769 44.000 0.00 0.00 31.73 4.06
2284 2441 4.193826 ACAGACTTACTTCATCGCATGT 57.806 40.909 0.00 0.00 0.00 3.21
2285 2442 5.324784 ACAGACTTACTTCATCGCATGTA 57.675 39.130 0.00 0.00 0.00 2.29
2288 2445 6.256539 ACAGACTTACTTCATCGCATGTATTG 59.743 38.462 0.00 0.00 0.00 1.90
2291 2448 6.578944 ACTTACTTCATCGCATGTATTGGTA 58.421 36.000 0.00 0.00 0.00 3.25
2292 2449 6.701841 ACTTACTTCATCGCATGTATTGGTAG 59.298 38.462 0.00 0.00 0.00 3.18
2295 2452 5.523916 ACTTCATCGCATGTATTGGTAGTTC 59.476 40.000 0.00 0.00 0.00 3.01
2313 2470 9.710818 TGGTAGTTCTAGAGGTTATAAGTTCAT 57.289 33.333 0.00 0.00 0.00 2.57
2334 2491 5.654650 TCATATTTCACTTTAAATGCCGGGT 59.345 36.000 2.18 0.00 31.63 5.28
2335 2492 4.882842 ATTTCACTTTAAATGCCGGGTT 57.117 36.364 2.18 0.00 0.00 4.11
2336 2493 3.926821 TTCACTTTAAATGCCGGGTTC 57.073 42.857 2.18 0.00 0.00 3.62
2337 2494 2.164338 TCACTTTAAATGCCGGGTTCC 58.836 47.619 2.18 0.00 0.00 3.62
2338 2495 1.203758 CACTTTAAATGCCGGGTTCCC 59.796 52.381 2.18 0.00 0.00 3.97
2349 2506 1.525941 CGGGTTCCCGTATTTTGTGT 58.474 50.000 20.65 0.00 43.86 3.72
2350 2507 1.198178 CGGGTTCCCGTATTTTGTGTG 59.802 52.381 20.65 0.00 43.86 3.82
2351 2508 2.506444 GGGTTCCCGTATTTTGTGTGA 58.494 47.619 0.00 0.00 0.00 3.58
2352 2509 3.086282 GGGTTCCCGTATTTTGTGTGAT 58.914 45.455 0.00 0.00 0.00 3.06
2353 2510 4.263435 GGGTTCCCGTATTTTGTGTGATA 58.737 43.478 0.00 0.00 0.00 2.15
2354 2511 4.701171 GGGTTCCCGTATTTTGTGTGATAA 59.299 41.667 0.00 0.00 0.00 1.75
2355 2512 5.392272 GGGTTCCCGTATTTTGTGTGATAAC 60.392 44.000 0.00 0.00 0.00 1.89
2356 2513 5.413523 GGTTCCCGTATTTTGTGTGATAACT 59.586 40.000 0.00 0.00 0.00 2.24
2357 2514 6.402875 GGTTCCCGTATTTTGTGTGATAACTC 60.403 42.308 0.00 0.00 0.00 3.01
2358 2515 5.795972 TCCCGTATTTTGTGTGATAACTCA 58.204 37.500 0.00 0.00 0.00 3.41
2369 2526 4.137116 GTGATAACTCACCAGCCATACA 57.863 45.455 0.00 0.00 45.06 2.29
2370 2527 4.513442 GTGATAACTCACCAGCCATACAA 58.487 43.478 0.00 0.00 45.06 2.41
2371 2528 4.332819 GTGATAACTCACCAGCCATACAAC 59.667 45.833 0.00 0.00 45.06 3.32
2372 2529 1.808411 AACTCACCAGCCATACAACG 58.192 50.000 0.00 0.00 0.00 4.10
2373 2530 0.973632 ACTCACCAGCCATACAACGA 59.026 50.000 0.00 0.00 0.00 3.85
2374 2531 1.555075 ACTCACCAGCCATACAACGAT 59.445 47.619 0.00 0.00 0.00 3.73
2375 2532 2.764010 ACTCACCAGCCATACAACGATA 59.236 45.455 0.00 0.00 0.00 2.92
2376 2533 3.388024 ACTCACCAGCCATACAACGATAT 59.612 43.478 0.00 0.00 0.00 1.63
2377 2534 3.990092 TCACCAGCCATACAACGATATC 58.010 45.455 0.00 0.00 0.00 1.63
2378 2535 3.067106 CACCAGCCATACAACGATATCC 58.933 50.000 0.00 0.00 0.00 2.59
2379 2536 2.703536 ACCAGCCATACAACGATATCCA 59.296 45.455 0.00 0.00 0.00 3.41
2380 2537 3.244215 ACCAGCCATACAACGATATCCAG 60.244 47.826 0.00 0.00 0.00 3.86
2381 2538 3.329386 CAGCCATACAACGATATCCAGG 58.671 50.000 0.00 0.00 0.00 4.45
2382 2539 2.076863 GCCATACAACGATATCCAGGC 58.923 52.381 0.00 0.00 0.00 4.85
2383 2540 2.549992 GCCATACAACGATATCCAGGCA 60.550 50.000 0.00 0.00 39.35 4.75
2384 2541 3.869912 GCCATACAACGATATCCAGGCAT 60.870 47.826 0.00 0.00 39.35 4.40
2385 2542 4.326826 CCATACAACGATATCCAGGCATT 58.673 43.478 0.00 0.00 0.00 3.56
2386 2543 4.761739 CCATACAACGATATCCAGGCATTT 59.238 41.667 0.00 0.00 0.00 2.32
2387 2544 5.106555 CCATACAACGATATCCAGGCATTTC 60.107 44.000 0.00 0.00 0.00 2.17
2388 2545 4.156455 ACAACGATATCCAGGCATTTCT 57.844 40.909 0.00 0.00 0.00 2.52
2389 2546 4.526970 ACAACGATATCCAGGCATTTCTT 58.473 39.130 0.00 0.00 0.00 2.52
2390 2547 4.576463 ACAACGATATCCAGGCATTTCTTC 59.424 41.667 0.00 0.00 0.00 2.87
2391 2548 3.744660 ACGATATCCAGGCATTTCTTCC 58.255 45.455 0.00 0.00 0.00 3.46
2392 2549 3.392616 ACGATATCCAGGCATTTCTTCCT 59.607 43.478 0.00 0.00 0.00 3.36
2393 2550 3.999663 CGATATCCAGGCATTTCTTCCTC 59.000 47.826 0.00 0.00 0.00 3.71
2394 2551 4.503817 CGATATCCAGGCATTTCTTCCTCA 60.504 45.833 0.00 0.00 0.00 3.86
2395 2552 3.744940 ATCCAGGCATTTCTTCCTCAA 57.255 42.857 0.00 0.00 0.00 3.02
2396 2553 2.795329 TCCAGGCATTTCTTCCTCAAC 58.205 47.619 0.00 0.00 0.00 3.18
2397 2554 2.108075 TCCAGGCATTTCTTCCTCAACA 59.892 45.455 0.00 0.00 0.00 3.33
2398 2555 3.094572 CCAGGCATTTCTTCCTCAACAT 58.905 45.455 0.00 0.00 0.00 2.71
2399 2556 3.119245 CCAGGCATTTCTTCCTCAACATG 60.119 47.826 0.00 0.00 0.00 3.21
2400 2557 3.760151 CAGGCATTTCTTCCTCAACATGA 59.240 43.478 0.00 0.00 0.00 3.07
2401 2558 4.219070 CAGGCATTTCTTCCTCAACATGAA 59.781 41.667 0.00 0.00 0.00 2.57
2402 2559 5.021458 AGGCATTTCTTCCTCAACATGAAT 58.979 37.500 0.00 0.00 0.00 2.57
2403 2560 5.482878 AGGCATTTCTTCCTCAACATGAATT 59.517 36.000 0.00 0.00 0.00 2.17
2404 2561 6.013984 AGGCATTTCTTCCTCAACATGAATTT 60.014 34.615 0.00 0.00 0.00 1.82
2405 2562 6.091713 GGCATTTCTTCCTCAACATGAATTTG 59.908 38.462 0.00 0.00 0.00 2.32
2406 2563 6.091713 GCATTTCTTCCTCAACATGAATTTGG 59.908 38.462 0.00 0.00 0.00 3.28
2407 2564 5.726980 TTCTTCCTCAACATGAATTTGGG 57.273 39.130 0.00 0.00 0.00 4.12
2408 2565 4.739793 TCTTCCTCAACATGAATTTGGGT 58.260 39.130 0.00 0.00 0.00 4.51
2409 2566 4.523943 TCTTCCTCAACATGAATTTGGGTG 59.476 41.667 0.00 0.00 0.00 4.61
2410 2567 2.562298 TCCTCAACATGAATTTGGGTGC 59.438 45.455 0.00 0.00 0.00 5.01
2411 2568 2.564062 CCTCAACATGAATTTGGGTGCT 59.436 45.455 0.00 0.00 0.00 4.40
2412 2569 3.007182 CCTCAACATGAATTTGGGTGCTT 59.993 43.478 0.00 0.00 0.00 3.91
2413 2570 4.220382 CCTCAACATGAATTTGGGTGCTTA 59.780 41.667 0.00 0.00 0.00 3.09
2414 2571 5.105228 CCTCAACATGAATTTGGGTGCTTAT 60.105 40.000 0.00 0.00 0.00 1.73
2415 2572 6.357579 TCAACATGAATTTGGGTGCTTATT 57.642 33.333 0.00 0.00 0.00 1.40
2416 2573 6.767456 TCAACATGAATTTGGGTGCTTATTT 58.233 32.000 0.00 0.00 0.00 1.40
2417 2574 6.649973 TCAACATGAATTTGGGTGCTTATTTG 59.350 34.615 0.00 0.00 0.00 2.32
2418 2575 6.112927 ACATGAATTTGGGTGCTTATTTGT 57.887 33.333 0.00 0.00 0.00 2.83
2419 2576 6.532826 ACATGAATTTGGGTGCTTATTTGTT 58.467 32.000 0.00 0.00 0.00 2.83
2420 2577 6.650390 ACATGAATTTGGGTGCTTATTTGTTC 59.350 34.615 0.00 0.00 0.00 3.18
2421 2578 6.418057 TGAATTTGGGTGCTTATTTGTTCT 57.582 33.333 0.00 0.00 0.00 3.01
2422 2579 6.454795 TGAATTTGGGTGCTTATTTGTTCTC 58.545 36.000 0.00 0.00 0.00 2.87
2423 2580 6.267471 TGAATTTGGGTGCTTATTTGTTCTCT 59.733 34.615 0.00 0.00 0.00 3.10
2424 2581 7.450014 TGAATTTGGGTGCTTATTTGTTCTCTA 59.550 33.333 0.00 0.00 0.00 2.43
2425 2582 7.961326 ATTTGGGTGCTTATTTGTTCTCTAT 57.039 32.000 0.00 0.00 0.00 1.98
2426 2583 7.775053 TTTGGGTGCTTATTTGTTCTCTATT 57.225 32.000 0.00 0.00 0.00 1.73
2427 2584 6.757897 TGGGTGCTTATTTGTTCTCTATTG 57.242 37.500 0.00 0.00 0.00 1.90
2428 2585 6.480763 TGGGTGCTTATTTGTTCTCTATTGA 58.519 36.000 0.00 0.00 0.00 2.57
2429 2586 6.945435 TGGGTGCTTATTTGTTCTCTATTGAA 59.055 34.615 0.00 0.00 0.00 2.69
2461 2904 3.256704 AGTTCCTCCCACATGTTCCTTA 58.743 45.455 0.00 0.00 0.00 2.69
2478 2921 7.936584 TGTTCCTTAATTTAGTTGGTCTGTTG 58.063 34.615 0.00 0.00 0.00 3.33
2526 2977 3.206150 ACATTATTTGCAGGCTAGACCG 58.794 45.455 0.00 0.00 46.52 4.79
2544 2995 1.540407 CGTTGCTTAGTCGAGCTCTC 58.460 55.000 12.85 4.92 43.11 3.20
2564 3015 0.608640 GAGACGGGAAAGCTGGAAGA 59.391 55.000 0.00 0.00 34.07 2.87
2568 3019 1.160137 CGGGAAAGCTGGAAGAGTTG 58.840 55.000 0.00 0.00 34.07 3.16
2592 3043 1.301293 CCCCAGGCTTGAGAGGAAC 59.699 63.158 0.00 0.00 0.00 3.62
2598 3049 2.810852 CAGGCTTGAGAGGAACTTCAAC 59.189 50.000 0.00 0.00 41.55 3.18
2634 3085 2.225019 CCGTATGATTGAATCTGCAGCC 59.775 50.000 9.47 1.00 0.00 4.85
2716 3167 5.854010 TGTCTATCTGACCACCTTACATC 57.146 43.478 0.00 0.00 44.75 3.06
2823 3274 5.045797 AGGTTGATTTAGGTAGTCTTGTCCC 60.046 44.000 0.00 0.00 0.00 4.46
2872 3323 8.496872 AATAAATTGTCCTTGTTAACGAAACG 57.503 30.769 0.26 0.00 41.30 3.60
2889 3340 5.187699 GAAACGTCGACATCTTAACTTCC 57.812 43.478 17.16 0.00 0.00 3.46
2905 3357 0.534203 TTCCGAGCCTTGTGGTGAAC 60.534 55.000 0.00 0.00 35.27 3.18
2943 3395 1.851666 GCACACACGGACAAAATTGTG 59.148 47.619 3.05 0.00 42.43 3.33
2967 3424 4.588528 TGCCAACTTTGCTTCCTAATCTTT 59.411 37.500 0.00 0.00 0.00 2.52
3018 3475 8.589701 ATTTTATTTTAATCCCTCCGTTCACT 57.410 30.769 0.00 0.00 0.00 3.41
3019 3476 8.411991 TTTTATTTTAATCCCTCCGTTCACTT 57.588 30.769 0.00 0.00 0.00 3.16
3020 3477 8.411991 TTTATTTTAATCCCTCCGTTCACTTT 57.588 30.769 0.00 0.00 0.00 2.66
3021 3478 6.911250 ATTTTAATCCCTCCGTTCACTTTT 57.089 33.333 0.00 0.00 0.00 2.27
3022 3479 5.699097 TTTAATCCCTCCGTTCACTTTTG 57.301 39.130 0.00 0.00 0.00 2.44
3023 3480 2.951229 ATCCCTCCGTTCACTTTTGT 57.049 45.000 0.00 0.00 0.00 2.83
3024 3481 4.360951 AATCCCTCCGTTCACTTTTGTA 57.639 40.909 0.00 0.00 0.00 2.41
3025 3482 3.842007 TCCCTCCGTTCACTTTTGTAA 57.158 42.857 0.00 0.00 0.00 2.41
3026 3483 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
3027 3484 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
3028 3485 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
3029 3486 4.124238 CCTCCGTTCACTTTTGTAAGTCA 58.876 43.478 0.00 0.00 42.67 3.41
3030 3487 4.755123 CCTCCGTTCACTTTTGTAAGTCAT 59.245 41.667 0.00 0.00 42.67 3.06
3031 3488 5.238650 CCTCCGTTCACTTTTGTAAGTCATT 59.761 40.000 0.00 0.00 42.67 2.57
3032 3489 6.238648 CCTCCGTTCACTTTTGTAAGTCATTT 60.239 38.462 0.00 0.00 42.67 2.32
3033 3490 6.721321 TCCGTTCACTTTTGTAAGTCATTTC 58.279 36.000 0.00 0.00 42.67 2.17
3034 3491 6.316640 TCCGTTCACTTTTGTAAGTCATTTCA 59.683 34.615 0.00 0.00 42.67 2.69
3035 3492 6.632834 CCGTTCACTTTTGTAAGTCATTTCAG 59.367 38.462 0.00 0.00 42.67 3.02
3036 3493 7.406553 CGTTCACTTTTGTAAGTCATTTCAGA 58.593 34.615 0.00 0.00 42.67 3.27
3037 3494 7.373441 CGTTCACTTTTGTAAGTCATTTCAGAC 59.627 37.037 0.00 0.00 42.67 3.51
3038 3495 7.857734 TCACTTTTGTAAGTCATTTCAGACA 57.142 32.000 0.00 0.00 42.67 3.41
3039 3496 8.275015 TCACTTTTGTAAGTCATTTCAGACAA 57.725 30.769 0.00 0.00 42.67 3.18
3040 3497 8.181573 TCACTTTTGTAAGTCATTTCAGACAAC 58.818 33.333 0.00 0.00 42.67 3.32
3041 3498 8.184192 CACTTTTGTAAGTCATTTCAGACAACT 58.816 33.333 0.00 0.00 42.67 3.16
3042 3499 8.398665 ACTTTTGTAAGTCATTTCAGACAACTC 58.601 33.333 0.00 0.00 40.60 3.01
3043 3500 7.857734 TTTGTAAGTCATTTCAGACAACTCA 57.142 32.000 0.00 0.00 40.98 3.41
3044 3501 7.857734 TTGTAAGTCATTTCAGACAACTCAA 57.142 32.000 0.00 0.00 40.98 3.02
3045 3502 7.857734 TGTAAGTCATTTCAGACAACTCAAA 57.142 32.000 0.00 0.00 40.98 2.69
3046 3503 8.275015 TGTAAGTCATTTCAGACAACTCAAAA 57.725 30.769 0.00 0.00 40.98 2.44
3047 3504 8.902806 TGTAAGTCATTTCAGACAACTCAAAAT 58.097 29.630 0.00 0.00 40.98 1.82
3048 3505 9.173939 GTAAGTCATTTCAGACAACTCAAAATG 57.826 33.333 0.00 0.00 40.98 2.32
3049 3506 6.742109 AGTCATTTCAGACAACTCAAAATGG 58.258 36.000 0.00 0.00 40.98 3.16
3050 3507 5.922544 GTCATTTCAGACAACTCAAAATGGG 59.077 40.000 0.00 0.00 37.16 4.00
3051 3508 4.320608 TTTCAGACAACTCAAAATGGGC 57.679 40.909 0.00 0.00 0.00 5.36
3052 3509 3.228188 TCAGACAACTCAAAATGGGCT 57.772 42.857 0.00 0.00 0.00 5.19
3053 3510 2.886523 TCAGACAACTCAAAATGGGCTG 59.113 45.455 0.00 0.00 0.00 4.85
3054 3511 2.624838 CAGACAACTCAAAATGGGCTGT 59.375 45.455 0.00 0.00 0.00 4.40
3055 3512 3.068590 CAGACAACTCAAAATGGGCTGTT 59.931 43.478 0.00 0.00 0.00 3.16
3056 3513 3.706086 AGACAACTCAAAATGGGCTGTTT 59.294 39.130 0.00 0.00 0.00 2.83
3057 3514 4.162131 AGACAACTCAAAATGGGCTGTTTT 59.838 37.500 0.00 0.00 0.00 2.43
3058 3515 5.362430 AGACAACTCAAAATGGGCTGTTTTA 59.638 36.000 1.28 0.00 0.00 1.52
3059 3516 6.041979 AGACAACTCAAAATGGGCTGTTTTAT 59.958 34.615 1.28 0.00 0.00 1.40
3060 3517 7.232534 AGACAACTCAAAATGGGCTGTTTTATA 59.767 33.333 1.28 0.00 0.00 0.98
3061 3518 7.151976 ACAACTCAAAATGGGCTGTTTTATAC 58.848 34.615 1.28 0.00 0.00 1.47
3062 3519 6.909550 ACTCAAAATGGGCTGTTTTATACA 57.090 33.333 1.28 0.00 34.95 2.29
3063 3520 7.480760 ACTCAAAATGGGCTGTTTTATACAT 57.519 32.000 1.28 0.00 35.85 2.29
3064 3521 7.906327 ACTCAAAATGGGCTGTTTTATACATT 58.094 30.769 0.00 0.00 35.85 2.71
3065 3522 7.818930 ACTCAAAATGGGCTGTTTTATACATTG 59.181 33.333 0.00 0.00 35.85 2.82
3066 3523 7.675062 TCAAAATGGGCTGTTTTATACATTGT 58.325 30.769 0.00 0.00 35.85 2.71
3067 3524 7.816995 TCAAAATGGGCTGTTTTATACATTGTC 59.183 33.333 0.00 0.00 35.85 3.18
3068 3525 7.480760 AAATGGGCTGTTTTATACATTGTCT 57.519 32.000 0.00 0.00 35.85 3.41
3069 3526 5.895636 TGGGCTGTTTTATACATTGTCTG 57.104 39.130 0.00 0.00 35.85 3.51
3070 3527 5.565509 TGGGCTGTTTTATACATTGTCTGA 58.434 37.500 0.00 0.00 35.85 3.27
3071 3528 6.007076 TGGGCTGTTTTATACATTGTCTGAA 58.993 36.000 0.00 0.00 35.85 3.02
3072 3529 6.491745 TGGGCTGTTTTATACATTGTCTGAAA 59.508 34.615 0.00 0.00 35.85 2.69
3073 3530 7.178274 TGGGCTGTTTTATACATTGTCTGAAAT 59.822 33.333 0.00 0.00 35.85 2.17
3074 3531 7.489113 GGGCTGTTTTATACATTGTCTGAAATG 59.511 37.037 0.00 9.50 42.21 2.32
3076 3533 9.065871 GCTGTTTTATACATTGTCTGAAATGTC 57.934 33.333 16.13 6.95 45.47 3.06
3083 3540 6.323203 ACATTGTCTGAAATGTCTTCAAGG 57.677 37.500 10.41 0.00 45.47 3.61
3084 3541 5.829924 ACATTGTCTGAAATGTCTTCAAGGT 59.170 36.000 10.41 0.00 45.47 3.50
3085 3542 6.016777 ACATTGTCTGAAATGTCTTCAAGGTC 60.017 38.462 10.41 0.00 45.47 3.85
3086 3543 5.296151 TGTCTGAAATGTCTTCAAGGTCT 57.704 39.130 0.00 0.00 0.00 3.85
3087 3544 5.684704 TGTCTGAAATGTCTTCAAGGTCTT 58.315 37.500 0.00 0.00 0.00 3.01
3088 3545 6.826668 TGTCTGAAATGTCTTCAAGGTCTTA 58.173 36.000 0.00 0.00 0.00 2.10
3089 3546 7.453393 TGTCTGAAATGTCTTCAAGGTCTTAT 58.547 34.615 0.00 0.00 0.00 1.73
3090 3547 8.593679 TGTCTGAAATGTCTTCAAGGTCTTATA 58.406 33.333 0.00 0.00 0.00 0.98
3091 3548 9.436957 GTCTGAAATGTCTTCAAGGTCTTATAA 57.563 33.333 0.00 0.00 0.00 0.98
3097 3554 9.793259 AATGTCTTCAAGGTCTTATAAAAGTGA 57.207 29.630 0.00 0.00 34.13 3.41
3098 3555 9.793259 ATGTCTTCAAGGTCTTATAAAAGTGAA 57.207 29.630 0.00 0.00 34.13 3.18
3099 3556 9.052759 TGTCTTCAAGGTCTTATAAAAGTGAAC 57.947 33.333 0.00 0.00 34.13 3.18
3100 3557 9.052759 GTCTTCAAGGTCTTATAAAAGTGAACA 57.947 33.333 0.00 0.00 34.13 3.18
3101 3558 9.273016 TCTTCAAGGTCTTATAAAAGTGAACAG 57.727 33.333 0.00 0.00 34.13 3.16
3102 3559 9.273016 CTTCAAGGTCTTATAAAAGTGAACAGA 57.727 33.333 0.00 0.00 34.13 3.41
3103 3560 8.833231 TCAAGGTCTTATAAAAGTGAACAGAG 57.167 34.615 0.00 0.00 34.13 3.35
3104 3561 7.878127 TCAAGGTCTTATAAAAGTGAACAGAGG 59.122 37.037 0.00 0.00 34.13 3.69
3105 3562 6.174049 AGGTCTTATAAAAGTGAACAGAGGC 58.826 40.000 0.00 0.00 34.13 4.70
3106 3563 5.938125 GGTCTTATAAAAGTGAACAGAGGCA 59.062 40.000 0.00 0.00 34.13 4.75
3107 3564 6.430000 GGTCTTATAAAAGTGAACAGAGGCAA 59.570 38.462 0.00 0.00 34.13 4.52
3114 3571 7.951530 AAAAGTGAACAGAGGCAATATTTTG 57.048 32.000 0.00 0.00 35.85 2.44
3195 3652 3.878103 TCCTCGATAGCTTAGCGGATATC 59.122 47.826 0.00 0.36 38.27 1.63
3204 3661 3.672781 GCTTAGCGGATATCGACCTAACC 60.673 52.174 0.00 0.00 42.43 2.85
3210 3667 2.401351 GATATCGACCTAACCAACGGC 58.599 52.381 0.00 0.00 0.00 5.68
3258 3715 4.322385 GTGGCAAACACGGCGGAC 62.322 66.667 13.24 0.00 40.85 4.79
3303 3760 3.050275 GGCAACCAGGACGACAGC 61.050 66.667 0.00 0.00 0.00 4.40
3318 3775 4.093291 AGCTCCGCCTTCAGCCAG 62.093 66.667 0.00 0.00 38.78 4.85
3381 3838 3.031736 CTCCTCAAACTCCCGGATCTTA 58.968 50.000 0.73 0.00 0.00 2.10
3385 3842 4.372656 CTCAAACTCCCGGATCTTATGAC 58.627 47.826 0.73 0.00 0.00 3.06
3398 3855 5.064834 GGATCTTATGACCGTCTTTGTTTCC 59.935 44.000 0.00 0.00 0.00 3.13
3408 3865 1.021202 CTTTGTTTCCGTGCTCCACA 58.979 50.000 0.00 0.00 33.40 4.17
3454 3911 4.778143 GATTCGGCCGGGCTGTGT 62.778 66.667 27.83 16.33 36.18 3.72
3455 3912 4.344865 ATTCGGCCGGGCTGTGTT 62.345 61.111 27.83 10.46 36.18 3.32
3456 3913 2.862674 GATTCGGCCGGGCTGTGTTA 62.863 60.000 27.83 11.60 36.18 2.41
3511 3968 2.285834 CCTTGTTACGATGATTGCTCGC 60.286 50.000 0.00 0.00 39.71 5.03
3521 3978 0.772926 GATTGCTCGCGTGTAGATCG 59.227 55.000 5.77 0.00 0.00 3.69
3557 4014 8.017946 GGAAGATGTACTCTTGTTTGACAAATC 58.982 37.037 3.49 0.00 44.42 2.17
3568 4025 9.283768 TCTTGTTTGACAAATCATTAAGCTAGA 57.716 29.630 3.49 0.00 37.69 2.43
3569 4026 9.897744 CTTGTTTGACAAATCATTAAGCTAGAA 57.102 29.630 3.49 0.00 37.69 2.10
3570 4027 9.897744 TTGTTTGACAAATCATTAAGCTAGAAG 57.102 29.630 3.49 0.00 34.76 2.85
3586 4043 1.750778 AGAAGCTGTTGTTGTGGTTGG 59.249 47.619 0.00 0.00 0.00 3.77
3588 4045 2.428544 AGCTGTTGTTGTGGTTGGTA 57.571 45.000 0.00 0.00 0.00 3.25
3616 4073 1.377725 TTAGGCTGCCTGCTCTTGC 60.378 57.895 30.83 0.00 42.39 4.01
3655 4112 6.397272 TGAAAGAGCACAATGTTTGAACTTT 58.603 32.000 0.00 0.00 0.00 2.66
3656 4113 6.531240 TGAAAGAGCACAATGTTTGAACTTTC 59.469 34.615 0.00 0.00 38.11 2.62
3657 4114 5.841957 AGAGCACAATGTTTGAACTTTCT 57.158 34.783 0.00 0.00 0.00 2.52
3658 4115 5.585390 AGAGCACAATGTTTGAACTTTCTG 58.415 37.500 0.00 0.00 0.00 3.02
3700 4175 4.281435 TGTTGGCTTGACAATGATGTTGAT 59.719 37.500 0.00 0.00 40.74 2.57
3701 4176 5.221481 TGTTGGCTTGACAATGATGTTGATT 60.221 36.000 0.00 0.00 40.74 2.57
3702 4177 4.811908 TGGCTTGACAATGATGTTGATTG 58.188 39.130 0.00 0.00 40.74 2.67
3703 4178 4.523558 TGGCTTGACAATGATGTTGATTGA 59.476 37.500 0.00 0.00 40.74 2.57
3704 4179 5.100259 GGCTTGACAATGATGTTGATTGAG 58.900 41.667 0.00 0.00 40.74 3.02
3705 4180 5.100259 GCTTGACAATGATGTTGATTGAGG 58.900 41.667 0.00 0.00 40.74 3.86
3706 4181 4.707030 TGACAATGATGTTGATTGAGGC 57.293 40.909 0.00 0.00 40.74 4.70
3707 4182 3.444742 TGACAATGATGTTGATTGAGGCC 59.555 43.478 0.00 0.00 40.74 5.19
3708 4183 3.433343 ACAATGATGTTGATTGAGGCCA 58.567 40.909 5.01 0.00 35.91 5.36
3710 4185 2.583024 TGATGTTGATTGAGGCCACA 57.417 45.000 5.01 0.25 0.00 4.17
3711 4186 3.090210 TGATGTTGATTGAGGCCACAT 57.910 42.857 5.01 3.47 0.00 3.21
3712 4187 3.018856 TGATGTTGATTGAGGCCACATC 58.981 45.455 18.53 18.53 34.73 3.06
3713 4188 2.885135 TGTTGATTGAGGCCACATCT 57.115 45.000 5.01 0.00 0.00 2.90
3714 4189 3.998913 TGTTGATTGAGGCCACATCTA 57.001 42.857 5.01 0.00 0.00 1.98
3736 4211 8.409358 TCTAAAGGGAGAAAAGAAAAAGGATG 57.591 34.615 0.00 0.00 0.00 3.51
3838 4314 4.987408 TGTATGATTTGCATGGTCAAGG 57.013 40.909 0.00 0.00 37.87 3.61
3842 4318 1.406539 GATTTGCATGGTCAAGGCGAT 59.593 47.619 0.00 0.00 0.00 4.58
3857 4333 3.767900 CGATGTCGATGTTTCGCTG 57.232 52.632 0.00 0.00 45.10 5.18
3871 4348 4.192317 GTTTCGCTGACCCTAAGATGATT 58.808 43.478 0.00 0.00 0.00 2.57
3880 4357 7.882271 GCTGACCCTAAGATGATTATTCATTCT 59.118 37.037 1.82 0.00 42.73 2.40
3905 4382 5.540337 TCTTCTAGACACATTGAAGTCTGGT 59.460 40.000 19.49 4.25 44.32 4.00
3906 4383 5.139435 TCTAGACACATTGAAGTCTGGTG 57.861 43.478 19.49 12.64 44.32 4.17
3907 4384 4.832823 TCTAGACACATTGAAGTCTGGTGA 59.167 41.667 19.49 13.99 44.32 4.02
3969 4448 5.482908 TCTTTATGACCTCTCAAGCTGAAC 58.517 41.667 0.00 0.00 0.00 3.18
4011 4491 9.920133 GATTTCAGATCAACATCAGCTACTATA 57.080 33.333 0.00 0.00 0.00 1.31
4013 4493 9.702494 TTTCAGATCAACATCAGCTACTATATG 57.298 33.333 0.00 0.00 0.00 1.78
4014 4494 8.414629 TCAGATCAACATCAGCTACTATATGT 57.585 34.615 0.00 0.00 34.11 2.29
4015 4495 8.302438 TCAGATCAACATCAGCTACTATATGTG 58.698 37.037 0.00 0.00 33.04 3.21
4016 4496 8.302438 CAGATCAACATCAGCTACTATATGTGA 58.698 37.037 0.00 0.00 33.04 3.58
4033 4513 9.197694 CTATATGTGATACAGTTCTTTACCTGC 57.802 37.037 0.00 0.00 0.00 4.85
4141 4725 3.243359 TCAGGCAGATTCCCAAACTTT 57.757 42.857 0.00 0.00 0.00 2.66
4164 4748 3.660865 ACTCCACCTTCACGTAAATGAC 58.339 45.455 0.00 0.00 0.00 3.06
4227 4811 9.390795 CTTCAAATTCACTCACTTTTATGTCAG 57.609 33.333 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
731 732 2.279517 GCCGCTATGAGGGTGACG 60.280 66.667 0.00 0.00 0.00 4.35
755 756 0.741221 GGCGCTTCTTGGTGTAGAGG 60.741 60.000 7.64 0.00 0.00 3.69
820 821 1.548357 GGGTGGCAGCTCTGAAGAGA 61.548 60.000 17.16 0.00 44.74 3.10
833 837 1.198759 TACCTGAACCTGAGGGTGGC 61.199 60.000 2.38 0.00 46.67 5.01
854 858 5.692204 CACAGTGAGGTTGAACTACTGTTAG 59.308 44.000 21.46 13.09 46.96 2.34
855 859 5.597806 CACAGTGAGGTTGAACTACTGTTA 58.402 41.667 21.46 0.00 46.96 2.41
856 860 4.442706 CACAGTGAGGTTGAACTACTGTT 58.557 43.478 21.46 11.01 46.96 3.16
858 862 2.802816 GCACAGTGAGGTTGAACTACTG 59.197 50.000 18.75 18.75 43.20 2.74
861 865 2.698274 TCAGCACAGTGAGGTTGAACTA 59.302 45.455 4.15 0.00 0.00 2.24
884 888 4.993584 AGTGAGTGTGCACTGAATTTAGAG 59.006 41.667 19.41 0.00 46.72 2.43
885 889 4.960938 AGTGAGTGTGCACTGAATTTAGA 58.039 39.130 19.41 0.00 46.72 2.10
908 912 2.229062 TGACTGACTGACCGAATGAGTC 59.771 50.000 0.00 0.00 37.27 3.36
910 914 3.516981 ATGACTGACTGACCGAATGAG 57.483 47.619 0.00 0.00 0.00 2.90
914 918 5.661056 ATAAGAATGACTGACTGACCGAA 57.339 39.130 0.00 0.00 0.00 4.30
915 919 5.067413 GGTATAAGAATGACTGACTGACCGA 59.933 44.000 0.00 0.00 0.00 4.69
916 920 5.067936 AGGTATAAGAATGACTGACTGACCG 59.932 44.000 0.00 0.00 0.00 4.79
917 921 6.472686 AGGTATAAGAATGACTGACTGACC 57.527 41.667 0.00 0.00 0.00 4.02
918 922 7.921745 GGTTAGGTATAAGAATGACTGACTGAC 59.078 40.741 0.00 0.00 0.00 3.51
922 926 9.968870 CTTAGGTTAGGTATAAGAATGACTGAC 57.031 37.037 0.00 0.00 0.00 3.51
943 947 5.235305 ACTGCGAAAAATGTATGCTTAGG 57.765 39.130 0.00 0.00 0.00 2.69
944 948 5.739161 GGAACTGCGAAAAATGTATGCTTAG 59.261 40.000 0.00 0.00 0.00 2.18
945 949 5.414454 AGGAACTGCGAAAAATGTATGCTTA 59.586 36.000 0.00 0.00 37.18 3.09
946 950 4.218417 AGGAACTGCGAAAAATGTATGCTT 59.782 37.500 0.00 0.00 37.18 3.91
947 951 3.758554 AGGAACTGCGAAAAATGTATGCT 59.241 39.130 0.00 0.00 37.18 3.79
948 952 4.096732 AGGAACTGCGAAAAATGTATGC 57.903 40.909 0.00 0.00 37.18 3.14
1050 1054 2.429930 CACGGTTTCAGCCTGGGA 59.570 61.111 0.00 0.00 0.00 4.37
1053 1057 2.972505 ACGCACGGTTTCAGCCTG 60.973 61.111 0.00 0.00 0.00 4.85
1063 1067 3.478394 CATGTCGGACACGCACGG 61.478 66.667 13.92 0.00 40.69 4.94
1116 1120 1.269102 CCGTCGGTGATCTGGTACATC 60.269 57.143 2.08 0.00 38.20 3.06
1179 1183 4.388499 AGCCGGCCCTTGTACACG 62.388 66.667 26.15 0.00 0.00 4.49
1209 1213 2.280797 TGCTTGACAGCCACGTCC 60.281 61.111 0.00 0.00 46.74 4.79
1311 1315 1.334160 TGCAGTACCCGACAAGAGAA 58.666 50.000 0.00 0.00 0.00 2.87
1317 1321 2.183300 GCGATGCAGTACCCGACA 59.817 61.111 0.00 0.00 0.00 4.35
1320 1324 0.249699 TATTGGCGATGCAGTACCCG 60.250 55.000 0.00 0.00 0.00 5.28
1380 1384 2.905075 CCGTGAAGGTGATAATGCAGA 58.095 47.619 0.00 0.00 34.51 4.26
1408 1412 6.541086 TGCACAAACAAAGCAAAATGTTAAG 58.459 32.000 0.00 0.00 38.75 1.85
1422 1429 4.125703 GGAAATGGTCATTGCACAAACAA 58.874 39.130 4.28 0.00 0.00 2.83
1434 1441 6.828273 CCAGAAGTTACATATGGAAATGGTCA 59.172 38.462 0.72 0.00 32.55 4.02
1473 1483 4.154195 GGTCGCATACATTTCAGAACAACT 59.846 41.667 0.00 0.00 0.00 3.16
1485 1495 0.901827 TGTCCTGTGGTCGCATACAT 59.098 50.000 0.00 0.00 0.00 2.29
1497 1507 2.208349 AGGCCTTCCCTGTCCTGT 59.792 61.111 0.00 0.00 44.28 4.00
1571 1581 5.297776 AGCATTACAATCTTCATGCAGGTAC 59.702 40.000 0.00 0.00 43.81 3.34
1603 1614 4.835284 TGGGGAAAATAATGAAAAGGGC 57.165 40.909 0.00 0.00 0.00 5.19
1615 1626 9.913310 TTTTTCTCAAAAAGTAATGGGGAAAAT 57.087 25.926 0.00 0.00 35.84 1.82
1635 1646 9.342308 GGGGAAAATGATTCTTTTTCTTTTTCT 57.658 29.630 25.01 1.40 41.82 2.52
1636 1647 9.119418 TGGGGAAAATGATTCTTTTTCTTTTTC 57.881 29.630 25.01 14.64 41.63 2.29
1637 1648 9.645128 ATGGGGAAAATGATTCTTTTTCTTTTT 57.355 25.926 25.01 13.12 40.98 1.94
1638 1649 9.645128 AATGGGGAAAATGATTCTTTTTCTTTT 57.355 25.926 25.01 15.84 40.98 2.27
1639 1650 9.645128 AAATGGGGAAAATGATTCTTTTTCTTT 57.355 25.926 25.01 18.35 40.98 2.52
1647 1658 8.654094 GGAATGATAAATGGGGAAAATGATTCT 58.346 33.333 0.00 0.00 0.00 2.40
1648 1659 7.599998 CGGAATGATAAATGGGGAAAATGATTC 59.400 37.037 0.00 0.00 0.00 2.52
1649 1660 7.444299 CGGAATGATAAATGGGGAAAATGATT 58.556 34.615 0.00 0.00 0.00 2.57
1655 1666 4.258457 ACCGGAATGATAAATGGGGAAA 57.742 40.909 9.46 0.00 0.00 3.13
1658 1669 4.161377 ACAAAACCGGAATGATAAATGGGG 59.839 41.667 9.46 0.00 0.00 4.96
1668 1679 3.842732 GGTTAGGACAAAACCGGAATG 57.157 47.619 9.46 6.38 37.26 2.67
1682 1693 2.134789 AAGAATGCAGCCAGGTTAGG 57.865 50.000 0.00 0.00 0.00 2.69
1683 1694 3.498927 CAAAGAATGCAGCCAGGTTAG 57.501 47.619 0.00 0.00 0.00 2.34
1696 1707 2.845363 CCTGCAAAAGGGCAAAGAAT 57.155 45.000 0.00 0.00 44.40 2.40
1728 1739 5.128663 TGAGGATTTGATGTCTCGGTGAATA 59.871 40.000 0.00 0.00 0.00 1.75
1731 1742 2.831526 TGAGGATTTGATGTCTCGGTGA 59.168 45.455 0.00 0.00 0.00 4.02
1800 1811 3.996363 TGAGATGTTCTCGGACACATTTG 59.004 43.478 0.47 0.00 46.25 2.32
1838 1849 5.143369 TCATGGACAGCATCTAGTCAGTAT 58.857 41.667 0.00 0.00 36.50 2.12
1845 1856 6.204301 CACCTAAATTCATGGACAGCATCTAG 59.796 42.308 0.00 0.00 0.00 2.43
1852 1863 2.689983 GGCCACCTAAATTCATGGACAG 59.310 50.000 0.00 0.00 40.29 3.51
1854 1865 1.676006 CGGCCACCTAAATTCATGGAC 59.324 52.381 2.24 0.00 36.84 4.02
1918 1931 1.137675 GTCCCCATAACCCGTGTAGTC 59.862 57.143 0.00 0.00 0.00 2.59
1950 1963 7.090173 GCCTCTGAATTTGCACATACTTTTTA 58.910 34.615 0.00 0.00 0.00 1.52
1954 1967 3.127548 CGCCTCTGAATTTGCACATACTT 59.872 43.478 0.00 0.00 0.00 2.24
1955 1968 2.679837 CGCCTCTGAATTTGCACATACT 59.320 45.455 0.00 0.00 0.00 2.12
1956 1969 2.420022 ACGCCTCTGAATTTGCACATAC 59.580 45.455 0.00 0.00 0.00 2.39
1957 1970 2.677836 GACGCCTCTGAATTTGCACATA 59.322 45.455 0.00 0.00 0.00 2.29
1958 1971 1.470098 GACGCCTCTGAATTTGCACAT 59.530 47.619 0.00 0.00 0.00 3.21
1959 1972 0.874390 GACGCCTCTGAATTTGCACA 59.126 50.000 0.00 0.00 0.00 4.57
1960 1973 1.160137 AGACGCCTCTGAATTTGCAC 58.840 50.000 0.00 0.00 0.00 4.57
1961 1974 2.028112 AGTAGACGCCTCTGAATTTGCA 60.028 45.455 0.00 0.00 0.00 4.08
1973 1986 8.328864 CAATTCTATAAAAAGACAGTAGACGCC 58.671 37.037 0.00 0.00 0.00 5.68
2050 2066 0.391130 TGCCACTTGACGCATACTCC 60.391 55.000 0.00 0.00 0.00 3.85
2059 2075 0.590195 CAGTCAGCTTGCCACTTGAC 59.410 55.000 5.06 5.06 40.08 3.18
2062 2078 0.761187 TCTCAGTCAGCTTGCCACTT 59.239 50.000 0.00 0.00 0.00 3.16
2071 2087 2.606725 CACATCGGATTTCTCAGTCAGC 59.393 50.000 0.00 0.00 0.00 4.26
2086 2102 3.303990 CCACACCAAAAGAGAACACATCG 60.304 47.826 0.00 0.00 0.00 3.84
2107 2123 7.527568 ACCAGTCATAAGCTCTAATAGTACC 57.472 40.000 0.00 0.00 0.00 3.34
2113 2129 5.854010 TTCGACCAGTCATAAGCTCTAAT 57.146 39.130 0.00 0.00 0.00 1.73
2143 2160 1.335810 CCCAATGGTCTTGATGCATCG 59.664 52.381 21.34 8.64 0.00 3.84
2188 2205 5.048713 GGCAACAAGTTGAGTGCTATAACTT 60.049 40.000 25.01 0.00 43.30 2.66
2207 2224 5.842907 ACAGGAACAATTTCTTTAGGCAAC 58.157 37.500 0.00 0.00 31.71 4.17
2243 2400 9.176713 AGTCTGTACTGCATGACTGTTCTAGTC 62.177 44.444 0.00 0.00 44.40 2.59
2249 2406 4.342862 AAGTCTGTACTGCATGACTGTT 57.657 40.909 0.00 0.00 36.46 3.16
2251 2408 5.065704 AGTAAGTCTGTACTGCATGACTG 57.934 43.478 0.00 0.00 36.46 3.51
2271 2428 5.023533 ACTACCAATACATGCGATGAAGT 57.976 39.130 0.00 0.00 0.00 3.01
2272 2429 5.755375 AGAACTACCAATACATGCGATGAAG 59.245 40.000 0.00 0.00 0.00 3.02
2311 2468 5.901552 ACCCGGCATTTAAAGTGAAATATG 58.098 37.500 0.00 0.00 0.00 1.78
2313 2470 5.105675 GGAACCCGGCATTTAAAGTGAAATA 60.106 40.000 0.00 0.00 0.00 1.40
2318 2475 2.647529 GGAACCCGGCATTTAAAGTG 57.352 50.000 0.00 0.00 0.00 3.16
2334 2491 6.231951 TGAGTTATCACACAAAATACGGGAA 58.768 36.000 0.00 0.00 0.00 3.97
2335 2492 5.795972 TGAGTTATCACACAAAATACGGGA 58.204 37.500 0.00 0.00 0.00 5.14
2349 2506 4.513442 GTTGTATGGCTGGTGAGTTATCA 58.487 43.478 0.00 0.00 0.00 2.15
2350 2507 3.555956 CGTTGTATGGCTGGTGAGTTATC 59.444 47.826 0.00 0.00 0.00 1.75
2351 2508 3.196901 TCGTTGTATGGCTGGTGAGTTAT 59.803 43.478 0.00 0.00 0.00 1.89
2352 2509 2.563620 TCGTTGTATGGCTGGTGAGTTA 59.436 45.455 0.00 0.00 0.00 2.24
2353 2510 1.346395 TCGTTGTATGGCTGGTGAGTT 59.654 47.619 0.00 0.00 0.00 3.01
2354 2511 0.973632 TCGTTGTATGGCTGGTGAGT 59.026 50.000 0.00 0.00 0.00 3.41
2355 2512 2.315925 ATCGTTGTATGGCTGGTGAG 57.684 50.000 0.00 0.00 0.00 3.51
2356 2513 3.244078 GGATATCGTTGTATGGCTGGTGA 60.244 47.826 0.00 0.00 0.00 4.02
2357 2514 3.067106 GGATATCGTTGTATGGCTGGTG 58.933 50.000 0.00 0.00 0.00 4.17
2358 2515 2.703536 TGGATATCGTTGTATGGCTGGT 59.296 45.455 0.00 0.00 0.00 4.00
2359 2516 3.329386 CTGGATATCGTTGTATGGCTGG 58.671 50.000 0.00 0.00 0.00 4.85
2360 2517 3.329386 CCTGGATATCGTTGTATGGCTG 58.671 50.000 0.00 0.00 0.00 4.85
2361 2518 2.289694 GCCTGGATATCGTTGTATGGCT 60.290 50.000 0.00 0.00 35.44 4.75
2362 2519 2.076863 GCCTGGATATCGTTGTATGGC 58.923 52.381 0.00 0.00 0.00 4.40
2363 2520 3.401033 TGCCTGGATATCGTTGTATGG 57.599 47.619 0.00 0.00 0.00 2.74
2364 2521 5.702670 AGAAATGCCTGGATATCGTTGTATG 59.297 40.000 0.00 0.00 0.00 2.39
2365 2522 5.869579 AGAAATGCCTGGATATCGTTGTAT 58.130 37.500 0.00 0.00 0.00 2.29
2366 2523 5.290493 AGAAATGCCTGGATATCGTTGTA 57.710 39.130 0.00 0.00 0.00 2.41
2367 2524 4.156455 AGAAATGCCTGGATATCGTTGT 57.844 40.909 0.00 0.00 0.00 3.32
2368 2525 4.023707 GGAAGAAATGCCTGGATATCGTTG 60.024 45.833 0.00 0.00 0.00 4.10
2369 2526 4.137543 GGAAGAAATGCCTGGATATCGTT 58.862 43.478 0.00 0.00 0.00 3.85
2370 2527 3.392616 AGGAAGAAATGCCTGGATATCGT 59.607 43.478 0.00 0.00 32.06 3.73
2371 2528 3.999663 GAGGAAGAAATGCCTGGATATCG 59.000 47.826 0.00 0.00 33.84 2.92
2372 2529 4.978099 TGAGGAAGAAATGCCTGGATATC 58.022 43.478 0.00 0.00 33.84 1.63
2373 2530 5.136105 GTTGAGGAAGAAATGCCTGGATAT 58.864 41.667 0.00 0.00 33.84 1.63
2374 2531 4.018506 TGTTGAGGAAGAAATGCCTGGATA 60.019 41.667 0.00 0.00 33.84 2.59
2375 2532 3.245371 TGTTGAGGAAGAAATGCCTGGAT 60.245 43.478 0.00 0.00 33.84 3.41
2376 2533 2.108075 TGTTGAGGAAGAAATGCCTGGA 59.892 45.455 0.00 0.00 33.84 3.86
2377 2534 2.517959 TGTTGAGGAAGAAATGCCTGG 58.482 47.619 0.00 0.00 33.84 4.45
2378 2535 3.760151 TCATGTTGAGGAAGAAATGCCTG 59.240 43.478 0.00 0.00 33.84 4.85
2379 2536 4.038271 TCATGTTGAGGAAGAAATGCCT 57.962 40.909 0.00 0.00 37.18 4.75
2380 2537 4.789012 TTCATGTTGAGGAAGAAATGCC 57.211 40.909 0.00 0.00 0.00 4.40
2381 2538 6.091713 CCAAATTCATGTTGAGGAAGAAATGC 59.908 38.462 0.00 0.00 0.00 3.56
2382 2539 6.592607 CCCAAATTCATGTTGAGGAAGAAATG 59.407 38.462 0.00 0.00 0.00 2.32
2383 2540 6.270695 ACCCAAATTCATGTTGAGGAAGAAAT 59.729 34.615 0.00 0.00 0.00 2.17
2384 2541 5.602145 ACCCAAATTCATGTTGAGGAAGAAA 59.398 36.000 0.00 0.00 0.00 2.52
2385 2542 5.010922 CACCCAAATTCATGTTGAGGAAGAA 59.989 40.000 0.00 0.00 0.00 2.52
2386 2543 4.523943 CACCCAAATTCATGTTGAGGAAGA 59.476 41.667 0.00 0.00 0.00 2.87
2387 2544 4.813027 CACCCAAATTCATGTTGAGGAAG 58.187 43.478 0.00 0.00 0.00 3.46
2388 2545 3.006752 GCACCCAAATTCATGTTGAGGAA 59.993 43.478 0.00 0.00 0.00 3.36
2389 2546 2.562298 GCACCCAAATTCATGTTGAGGA 59.438 45.455 0.00 0.00 0.00 3.71
2390 2547 2.564062 AGCACCCAAATTCATGTTGAGG 59.436 45.455 0.00 0.00 0.00 3.86
2391 2548 3.947910 AGCACCCAAATTCATGTTGAG 57.052 42.857 0.00 0.00 0.00 3.02
2392 2549 5.999205 ATAAGCACCCAAATTCATGTTGA 57.001 34.783 0.00 0.00 0.00 3.18
2393 2550 6.427547 ACAAATAAGCACCCAAATTCATGTTG 59.572 34.615 0.00 0.00 0.00 3.33
2394 2551 6.532826 ACAAATAAGCACCCAAATTCATGTT 58.467 32.000 0.00 0.00 0.00 2.71
2395 2552 6.112927 ACAAATAAGCACCCAAATTCATGT 57.887 33.333 0.00 0.00 0.00 3.21
2396 2553 6.875195 AGAACAAATAAGCACCCAAATTCATG 59.125 34.615 0.00 0.00 0.00 3.07
2397 2554 7.008021 AGAACAAATAAGCACCCAAATTCAT 57.992 32.000 0.00 0.00 0.00 2.57
2398 2555 6.267471 AGAGAACAAATAAGCACCCAAATTCA 59.733 34.615 0.00 0.00 0.00 2.57
2399 2556 6.691508 AGAGAACAAATAAGCACCCAAATTC 58.308 36.000 0.00 0.00 0.00 2.17
2400 2557 6.670695 AGAGAACAAATAAGCACCCAAATT 57.329 33.333 0.00 0.00 0.00 1.82
2401 2558 7.961326 ATAGAGAACAAATAAGCACCCAAAT 57.039 32.000 0.00 0.00 0.00 2.32
2402 2559 7.450014 TCAATAGAGAACAAATAAGCACCCAAA 59.550 33.333 0.00 0.00 0.00 3.28
2403 2560 6.945435 TCAATAGAGAACAAATAAGCACCCAA 59.055 34.615 0.00 0.00 0.00 4.12
2404 2561 6.480763 TCAATAGAGAACAAATAAGCACCCA 58.519 36.000 0.00 0.00 0.00 4.51
2405 2562 7.391148 TTCAATAGAGAACAAATAAGCACCC 57.609 36.000 0.00 0.00 0.00 4.61
2406 2563 9.294030 CATTTCAATAGAGAACAAATAAGCACC 57.706 33.333 0.00 0.00 0.00 5.01
2544 2995 0.737715 CTTCCAGCTTTCCCGTCTCG 60.738 60.000 0.00 0.00 0.00 4.04
2564 3015 3.637273 GCCTGGGGTCGACCAACT 61.637 66.667 34.40 0.00 40.68 3.16
2568 3019 3.316573 CTCAAGCCTGGGGTCGACC 62.317 68.421 27.04 27.04 39.11 4.79
2592 3043 3.120649 GGAACATTTCGACCTCGTTGAAG 60.121 47.826 0.00 0.00 37.27 3.02
2598 3049 2.267188 TACGGAACATTTCGACCTCG 57.733 50.000 0.00 0.00 41.45 4.63
2634 3085 2.792290 CGAGTGTCGAATGCAGGCG 61.792 63.158 4.76 4.76 43.74 5.52
2716 3167 8.127150 TCTAGGAATGTCCACATGATATAGTG 57.873 38.462 0.00 0.00 39.61 2.74
2823 3274 3.349927 TGATGGCAGAAGGATTTGACAG 58.650 45.455 0.00 0.00 35.43 3.51
2872 3323 2.853003 GCTCGGAAGTTAAGATGTCGAC 59.147 50.000 9.11 9.11 0.00 4.20
2889 3340 0.951040 GAGGTTCACCACAAGGCTCG 60.951 60.000 0.00 0.00 39.06 5.03
2905 3357 2.514592 ATTGGATGCGGTGCGAGG 60.515 61.111 0.00 0.00 0.00 4.63
2931 3383 3.177997 AGTTGGCACACAATTTTGTCC 57.822 42.857 0.00 0.97 41.95 4.02
2943 3395 3.507622 AGATTAGGAAGCAAAGTTGGCAC 59.492 43.478 4.74 0.00 0.00 5.01
3004 3461 2.951229 ACAAAAGTGAACGGAGGGAT 57.049 45.000 0.00 0.00 0.00 3.85
3006 3463 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
3007 3464 4.124238 TGACTTACAAAAGTGAACGGAGG 58.876 43.478 0.00 0.00 46.09 4.30
3008 3465 5.924475 ATGACTTACAAAAGTGAACGGAG 57.076 39.130 0.00 0.00 46.09 4.63
3009 3466 6.316640 TGAAATGACTTACAAAAGTGAACGGA 59.683 34.615 0.00 0.00 46.09 4.69
3010 3467 6.491394 TGAAATGACTTACAAAAGTGAACGG 58.509 36.000 0.00 0.00 46.09 4.44
3011 3468 7.373441 GTCTGAAATGACTTACAAAAGTGAACG 59.627 37.037 0.00 0.00 46.09 3.95
3012 3469 8.181573 TGTCTGAAATGACTTACAAAAGTGAAC 58.818 33.333 0.00 0.00 46.09 3.18
3013 3470 8.275015 TGTCTGAAATGACTTACAAAAGTGAA 57.725 30.769 0.00 0.00 46.09 3.18
3014 3471 7.857734 TGTCTGAAATGACTTACAAAAGTGA 57.142 32.000 0.00 0.00 46.09 3.41
3015 3472 8.184192 AGTTGTCTGAAATGACTTACAAAAGTG 58.816 33.333 0.00 0.00 46.09 3.16
3017 3474 8.397906 TGAGTTGTCTGAAATGACTTACAAAAG 58.602 33.333 0.00 0.00 37.79 2.27
3018 3475 8.275015 TGAGTTGTCTGAAATGACTTACAAAA 57.725 30.769 0.00 0.00 37.79 2.44
3019 3476 7.857734 TGAGTTGTCTGAAATGACTTACAAA 57.142 32.000 0.00 0.00 37.79 2.83
3020 3477 7.857734 TTGAGTTGTCTGAAATGACTTACAA 57.142 32.000 0.00 0.00 37.79 2.41
3021 3478 7.857734 TTTGAGTTGTCTGAAATGACTTACA 57.142 32.000 0.00 0.00 37.79 2.41
3022 3479 9.173939 CATTTTGAGTTGTCTGAAATGACTTAC 57.826 33.333 0.00 0.00 38.18 2.34
3023 3480 8.352201 CCATTTTGAGTTGTCTGAAATGACTTA 58.648 33.333 8.27 0.00 38.18 2.24
3024 3481 7.205297 CCATTTTGAGTTGTCTGAAATGACTT 58.795 34.615 8.27 0.00 38.18 3.01
3025 3482 6.239120 CCCATTTTGAGTTGTCTGAAATGACT 60.239 38.462 8.27 0.00 38.18 3.41
3026 3483 5.922544 CCCATTTTGAGTTGTCTGAAATGAC 59.077 40.000 8.27 0.00 38.18 3.06
3027 3484 5.509501 GCCCATTTTGAGTTGTCTGAAATGA 60.510 40.000 8.27 0.00 38.18 2.57
3028 3485 4.687483 GCCCATTTTGAGTTGTCTGAAATG 59.313 41.667 0.00 0.00 37.04 2.32
3029 3486 4.590222 AGCCCATTTTGAGTTGTCTGAAAT 59.410 37.500 0.00 0.00 0.00 2.17
3030 3487 3.960102 AGCCCATTTTGAGTTGTCTGAAA 59.040 39.130 0.00 0.00 0.00 2.69
3031 3488 3.318839 CAGCCCATTTTGAGTTGTCTGAA 59.681 43.478 0.00 0.00 0.00 3.02
3032 3489 2.886523 CAGCCCATTTTGAGTTGTCTGA 59.113 45.455 0.00 0.00 0.00 3.27
3033 3490 2.624838 ACAGCCCATTTTGAGTTGTCTG 59.375 45.455 0.00 0.00 0.00 3.51
3034 3491 2.949447 ACAGCCCATTTTGAGTTGTCT 58.051 42.857 0.00 0.00 0.00 3.41
3035 3492 3.733443 AACAGCCCATTTTGAGTTGTC 57.267 42.857 0.00 0.00 0.00 3.18
3036 3493 4.486125 AAAACAGCCCATTTTGAGTTGT 57.514 36.364 0.00 0.00 0.00 3.32
3037 3494 7.151308 TGTATAAAACAGCCCATTTTGAGTTG 58.849 34.615 1.51 0.00 33.01 3.16
3038 3495 7.296628 TGTATAAAACAGCCCATTTTGAGTT 57.703 32.000 1.51 0.00 33.01 3.01
3039 3496 6.909550 TGTATAAAACAGCCCATTTTGAGT 57.090 33.333 1.51 0.00 33.01 3.41
3040 3497 7.818930 ACAATGTATAAAACAGCCCATTTTGAG 59.181 33.333 0.00 0.00 42.70 3.02
3041 3498 7.675062 ACAATGTATAAAACAGCCCATTTTGA 58.325 30.769 0.00 0.00 42.70 2.69
3042 3499 7.818930 AGACAATGTATAAAACAGCCCATTTTG 59.181 33.333 0.00 0.00 42.70 2.44
3043 3500 7.818930 CAGACAATGTATAAAACAGCCCATTTT 59.181 33.333 0.00 0.00 42.70 1.82
3044 3501 7.178274 TCAGACAATGTATAAAACAGCCCATTT 59.822 33.333 0.00 0.00 42.70 2.32
3045 3502 6.663093 TCAGACAATGTATAAAACAGCCCATT 59.337 34.615 0.00 0.00 42.70 3.16
3046 3503 6.186957 TCAGACAATGTATAAAACAGCCCAT 58.813 36.000 0.00 0.00 42.70 4.00
3047 3504 5.565509 TCAGACAATGTATAAAACAGCCCA 58.434 37.500 0.00 0.00 42.70 5.36
3048 3505 6.509418 TTCAGACAATGTATAAAACAGCCC 57.491 37.500 0.00 0.00 42.70 5.19
3049 3506 8.028938 ACATTTCAGACAATGTATAAAACAGCC 58.971 33.333 8.41 0.00 44.08 4.85
3050 3507 8.970691 ACATTTCAGACAATGTATAAAACAGC 57.029 30.769 8.41 0.00 44.08 4.40
3057 3514 9.166173 CCTTGAAGACATTTCAGACAATGTATA 57.834 33.333 9.58 0.00 45.55 1.47
3058 3515 7.667219 ACCTTGAAGACATTTCAGACAATGTAT 59.333 33.333 9.58 5.75 45.55 2.29
3059 3516 6.998074 ACCTTGAAGACATTTCAGACAATGTA 59.002 34.615 9.58 0.00 45.55 2.29
3061 3518 6.206243 AGACCTTGAAGACATTTCAGACAATG 59.794 38.462 0.00 0.00 39.67 2.82
3062 3519 6.302269 AGACCTTGAAGACATTTCAGACAAT 58.698 36.000 0.00 0.00 0.00 2.71
3063 3520 5.684704 AGACCTTGAAGACATTTCAGACAA 58.315 37.500 0.00 0.00 0.00 3.18
3064 3521 5.296151 AGACCTTGAAGACATTTCAGACA 57.704 39.130 0.00 0.00 0.00 3.41
3065 3522 7.913674 ATAAGACCTTGAAGACATTTCAGAC 57.086 36.000 0.00 0.00 0.00 3.51
3071 3528 9.793259 TCACTTTTATAAGACCTTGAAGACATT 57.207 29.630 0.00 0.00 35.30 2.71
3072 3529 9.793259 TTCACTTTTATAAGACCTTGAAGACAT 57.207 29.630 0.00 0.00 35.30 3.06
3073 3530 9.052759 GTTCACTTTTATAAGACCTTGAAGACA 57.947 33.333 0.00 0.00 35.30 3.41
3074 3531 9.052759 TGTTCACTTTTATAAGACCTTGAAGAC 57.947 33.333 0.00 0.00 35.30 3.01
3075 3532 9.273016 CTGTTCACTTTTATAAGACCTTGAAGA 57.727 33.333 0.00 0.00 35.30 2.87
3076 3533 9.273016 TCTGTTCACTTTTATAAGACCTTGAAG 57.727 33.333 0.00 0.00 35.30 3.02
3077 3534 9.273016 CTCTGTTCACTTTTATAAGACCTTGAA 57.727 33.333 0.00 0.00 35.30 2.69
3078 3535 7.878127 CCTCTGTTCACTTTTATAAGACCTTGA 59.122 37.037 0.00 0.00 35.30 3.02
3079 3536 7.361286 GCCTCTGTTCACTTTTATAAGACCTTG 60.361 40.741 0.00 0.00 35.30 3.61
3080 3537 6.655425 GCCTCTGTTCACTTTTATAAGACCTT 59.345 38.462 0.00 0.00 35.30 3.50
3081 3538 6.174049 GCCTCTGTTCACTTTTATAAGACCT 58.826 40.000 0.00 0.00 35.30 3.85
3082 3539 5.938125 TGCCTCTGTTCACTTTTATAAGACC 59.062 40.000 0.00 0.00 35.30 3.85
3083 3540 7.435068 TTGCCTCTGTTCACTTTTATAAGAC 57.565 36.000 0.00 0.00 35.30 3.01
3084 3541 9.905713 ATATTGCCTCTGTTCACTTTTATAAGA 57.094 29.630 0.00 0.00 35.30 2.10
3088 3545 9.643693 CAAAATATTGCCTCTGTTCACTTTTAT 57.356 29.630 0.00 0.00 0.00 1.40
3089 3546 8.637986 ACAAAATATTGCCTCTGTTCACTTTTA 58.362 29.630 0.00 0.00 40.34 1.52
3090 3547 7.500141 ACAAAATATTGCCTCTGTTCACTTTT 58.500 30.769 0.00 0.00 40.34 2.27
3091 3548 7.054491 ACAAAATATTGCCTCTGTTCACTTT 57.946 32.000 0.00 0.00 40.34 2.66
3092 3549 6.655078 ACAAAATATTGCCTCTGTTCACTT 57.345 33.333 0.00 0.00 40.34 3.16
3093 3550 6.655078 AACAAAATATTGCCTCTGTTCACT 57.345 33.333 0.00 0.00 40.34 3.41
3094 3551 6.146021 CCAAACAAAATATTGCCTCTGTTCAC 59.854 38.462 0.00 0.00 40.34 3.18
3095 3552 6.183360 ACCAAACAAAATATTGCCTCTGTTCA 60.183 34.615 0.00 0.00 40.34 3.18
3096 3553 6.223120 ACCAAACAAAATATTGCCTCTGTTC 58.777 36.000 0.00 0.00 40.34 3.18
3097 3554 6.173427 ACCAAACAAAATATTGCCTCTGTT 57.827 33.333 0.00 0.00 40.34 3.16
3098 3555 5.304101 TGACCAAACAAAATATTGCCTCTGT 59.696 36.000 0.00 0.00 40.34 3.41
3099 3556 5.782047 TGACCAAACAAAATATTGCCTCTG 58.218 37.500 0.00 0.00 40.34 3.35
3100 3557 5.774690 TCTGACCAAACAAAATATTGCCTCT 59.225 36.000 0.00 0.00 40.34 3.69
3101 3558 6.024552 TCTGACCAAACAAAATATTGCCTC 57.975 37.500 0.00 0.00 40.34 4.70
3102 3559 5.047092 CCTCTGACCAAACAAAATATTGCCT 60.047 40.000 0.00 0.00 40.34 4.75
3103 3560 5.047377 TCCTCTGACCAAACAAAATATTGCC 60.047 40.000 0.00 0.00 40.34 4.52
3104 3561 6.024552 TCCTCTGACCAAACAAAATATTGC 57.975 37.500 0.00 0.00 40.34 3.56
3107 3564 9.308000 TGTTAATCCTCTGACCAAACAAAATAT 57.692 29.630 0.00 0.00 0.00 1.28
3114 3571 6.039382 ACAAGTTGTTAATCCTCTGACCAAAC 59.961 38.462 1.64 0.00 0.00 2.93
3195 3652 2.048877 ACGCCGTTGGTTAGGTCG 60.049 61.111 0.00 0.00 34.76 4.79
3210 3667 4.463879 CTCTGCCCTGGCTGGACG 62.464 72.222 12.58 0.00 42.51 4.79
3225 3682 1.347817 CCACGTTGAAGAGCTCGCTC 61.348 60.000 8.37 10.83 43.03 5.03
3258 3715 2.704464 TCTGCTGGAACATCCTGATG 57.296 50.000 5.60 5.60 44.15 3.07
3318 3775 2.294791 ACTGCGACTGATCCAGCTATAC 59.705 50.000 0.00 0.00 34.37 1.47
3357 3814 1.192146 TCCGGGAGTTTGAGGAGGTG 61.192 60.000 0.00 0.00 0.00 4.00
3381 3838 1.871039 CACGGAAACAAAGACGGTCAT 59.129 47.619 11.27 0.00 0.00 3.06
3385 3842 0.234884 GAGCACGGAAACAAAGACGG 59.765 55.000 0.00 0.00 0.00 4.79
3398 3855 1.545759 CTACGTACATGTGGAGCACG 58.454 55.000 14.79 14.79 37.14 5.34
3408 3865 3.630769 TCGAGAAGAATGGCTACGTACAT 59.369 43.478 0.00 0.00 0.00 2.29
3488 3945 1.665679 AGCAATCATCGTAACAAGGCG 59.334 47.619 0.00 0.00 0.00 5.52
3521 3978 0.100682 TACATCTTCCTCGCTCGTGC 59.899 55.000 0.00 0.00 0.00 5.34
3524 3981 1.944024 AGAGTACATCTTCCTCGCTCG 59.056 52.381 0.00 0.00 32.99 5.03
3525 3982 3.129638 ACAAGAGTACATCTTCCTCGCTC 59.870 47.826 0.00 0.00 45.50 5.03
3526 3983 3.093057 ACAAGAGTACATCTTCCTCGCT 58.907 45.455 0.00 0.00 45.50 4.93
3527 3984 3.512033 ACAAGAGTACATCTTCCTCGC 57.488 47.619 0.00 0.00 45.50 5.03
3568 4025 1.555967 ACCAACCACAACAACAGCTT 58.444 45.000 0.00 0.00 0.00 3.74
3569 4026 2.425668 GTTACCAACCACAACAACAGCT 59.574 45.455 0.00 0.00 0.00 4.24
3570 4027 2.425668 AGTTACCAACCACAACAACAGC 59.574 45.455 0.00 0.00 0.00 4.40
3586 4043 4.392138 CAGGCAGCCTAACAAGTTAGTTAC 59.608 45.833 15.64 7.64 40.59 2.50
3588 4045 3.412386 CAGGCAGCCTAACAAGTTAGTT 58.588 45.455 15.64 4.43 40.59 2.24
3616 4073 3.141398 TCTTTCAGTTAGGCAACAGCAG 58.859 45.455 0.00 0.00 37.10 4.24
3655 4112 7.681939 ACAACACAAAAAGAAAGACTACAGA 57.318 32.000 0.00 0.00 0.00 3.41
3656 4113 7.273381 CCAACAACACAAAAAGAAAGACTACAG 59.727 37.037 0.00 0.00 0.00 2.74
3657 4114 7.087639 CCAACAACACAAAAAGAAAGACTACA 58.912 34.615 0.00 0.00 0.00 2.74
3658 4115 6.034577 GCCAACAACACAAAAAGAAAGACTAC 59.965 38.462 0.00 0.00 0.00 2.73
3700 4175 2.239654 CTCCCTTTAGATGTGGCCTCAA 59.760 50.000 12.26 0.00 0.00 3.02
3701 4176 1.839994 CTCCCTTTAGATGTGGCCTCA 59.160 52.381 10.45 10.45 0.00 3.86
3702 4177 2.119495 TCTCCCTTTAGATGTGGCCTC 58.881 52.381 3.32 0.00 0.00 4.70
3703 4178 2.270434 TCTCCCTTTAGATGTGGCCT 57.730 50.000 3.32 0.00 0.00 5.19
3704 4179 3.366052 TTTCTCCCTTTAGATGTGGCC 57.634 47.619 0.00 0.00 0.00 5.36
3705 4180 4.589908 TCTTTTCTCCCTTTAGATGTGGC 58.410 43.478 0.00 0.00 0.00 5.01
3706 4181 7.524717 TTTTCTTTTCTCCCTTTAGATGTGG 57.475 36.000 0.00 0.00 0.00 4.17
3707 4182 8.084684 CCTTTTTCTTTTCTCCCTTTAGATGTG 58.915 37.037 0.00 0.00 0.00 3.21
3708 4183 8.004801 TCCTTTTTCTTTTCTCCCTTTAGATGT 58.995 33.333 0.00 0.00 0.00 3.06
3710 4185 9.029368 CATCCTTTTTCTTTTCTCCCTTTAGAT 57.971 33.333 0.00 0.00 0.00 1.98
3711 4186 7.039714 GCATCCTTTTTCTTTTCTCCCTTTAGA 60.040 37.037 0.00 0.00 0.00 2.10
3712 4187 7.039434 AGCATCCTTTTTCTTTTCTCCCTTTAG 60.039 37.037 0.00 0.00 0.00 1.85
3713 4188 6.782494 AGCATCCTTTTTCTTTTCTCCCTTTA 59.218 34.615 0.00 0.00 0.00 1.85
3714 4189 5.604231 AGCATCCTTTTTCTTTTCTCCCTTT 59.396 36.000 0.00 0.00 0.00 3.11
3842 4318 0.669318 GGGTCAGCGAAACATCGACA 60.669 55.000 1.91 0.00 34.64 4.35
3880 4357 6.042093 ACCAGACTTCAATGTGTCTAGAAGAA 59.958 38.462 7.90 0.00 41.06 2.52
3905 4382 4.610333 TGGTCTTAGAATGTAGCCTCTCA 58.390 43.478 0.00 0.00 0.00 3.27
3906 4383 5.361285 TCTTGGTCTTAGAATGTAGCCTCTC 59.639 44.000 0.00 0.00 0.00 3.20
3907 4384 5.273208 TCTTGGTCTTAGAATGTAGCCTCT 58.727 41.667 0.00 0.00 0.00 3.69
3969 4448 6.037726 TCTGAAATCGCCATCATGAAAAATG 58.962 36.000 0.00 0.00 0.00 2.32
4011 4491 5.804639 TGCAGGTAAAGAACTGTATCACAT 58.195 37.500 0.00 0.00 37.07 3.21
4012 4492 5.222079 TGCAGGTAAAGAACTGTATCACA 57.778 39.130 0.00 0.00 37.07 3.58
4016 4496 4.878397 GCTGATGCAGGTAAAGAACTGTAT 59.122 41.667 0.00 0.00 41.67 2.29
4033 4513 6.703165 TGTTAGTCATATGTTAGCTGCTGATG 59.297 38.462 13.43 7.98 0.00 3.07
4132 4716 4.037565 GTGAAGGTGGAGTTAAAGTTTGGG 59.962 45.833 0.00 0.00 0.00 4.12
4141 4725 5.221481 TGTCATTTACGTGAAGGTGGAGTTA 60.221 40.000 4.61 0.00 0.00 2.24
4164 4748 3.996363 TGCTGCTAGTTATCAACAGTGTG 59.004 43.478 0.00 0.00 0.00 3.82
4211 4795 5.163301 ACTGGTGACTGACATAAAAGTGAGT 60.163 40.000 0.00 0.00 38.69 3.41
4299 4883 6.820656 ACTGAGAGAATAGCACTTTATTGTGG 59.179 38.462 0.00 0.00 38.31 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.