Multiple sequence alignment - TraesCS1A01G445400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G445400 chr1A 100.000 1701 0 0 790 2490 592994122 592995822 0.000000e+00 3142.0
1 TraesCS1A01G445400 chr1A 85.387 1136 106 35 790 1918 592924908 592925990 0.000000e+00 1123.0
2 TraesCS1A01G445400 chr1A 100.000 411 0 0 1 411 592993333 592993743 0.000000e+00 760.0
3 TraesCS1A01G445400 chr1A 87.522 569 51 10 933 1481 592100245 592099677 7.510000e-180 640.0
4 TraesCS1A01G445400 chr1A 89.028 319 31 4 1975 2291 13295075 13294759 2.320000e-105 392.0
5 TraesCS1A01G445400 chr1A 86.614 127 14 1 790 913 592100426 592100300 1.200000e-28 137.0
6 TraesCS1A01G445400 chr1B 95.378 1125 43 4 798 1922 687531275 687532390 0.000000e+00 1781.0
7 TraesCS1A01G445400 chr1B 83.843 687 83 18 821 1481 686854015 686853331 1.630000e-176 628.0
8 TraesCS1A01G445400 chr1B 95.821 335 8 6 1 330 687530470 687530803 1.010000e-148 536.0
9 TraesCS1A01G445400 chr1B 86.598 388 37 11 1916 2295 343988575 343988955 4.950000e-112 414.0
10 TraesCS1A01G445400 chr1B 88.308 325 33 5 1971 2291 16508227 16507904 3.880000e-103 385.0
11 TraesCS1A01G445400 chr1B 96.335 191 7 0 2300 2490 687532391 687532581 5.170000e-82 315.0
12 TraesCS1A01G445400 chr1D 96.067 1068 31 7 855 1922 494349617 494350673 0.000000e+00 1729.0
13 TraesCS1A01G445400 chr1D 86.895 1137 107 30 790 1918 494306649 494307751 0.000000e+00 1236.0
14 TraesCS1A01G445400 chr1D 87.722 562 56 6 933 1481 493782612 493782051 0.000000e+00 643.0
15 TraesCS1A01G445400 chr1D 94.915 295 6 5 45 330 494348976 494349270 1.050000e-123 453.0
16 TraesCS1A01G445400 chr1D 97.382 191 5 0 2300 2490 494350674 494350864 2.390000e-85 326.0
17 TraesCS1A01G445400 chr1D 85.714 154 16 3 790 937 493782789 493782636 9.220000e-35 158.0
18 TraesCS1A01G445400 chrUn 88.414 889 79 17 792 1674 290639026 290638156 0.000000e+00 1050.0
19 TraesCS1A01G445400 chrUn 88.414 889 79 17 792 1674 290644751 290643881 0.000000e+00 1050.0
20 TraesCS1A01G445400 chrUn 88.414 889 79 17 792 1674 320337438 320338308 0.000000e+00 1050.0
21 TraesCS1A01G445400 chr7A 87.696 382 35 10 1919 2291 694514795 694514417 3.800000e-118 435.0
22 TraesCS1A01G445400 chr2D 86.911 382 38 8 1919 2291 606136913 606136535 3.830000e-113 418.0
23 TraesCS1A01G445400 chr2D 85.492 386 43 8 1917 2291 5420909 5421292 8.350000e-105 390.0
24 TraesCS1A01G445400 chr5D 86.352 381 34 8 1917 2293 449038289 449038655 1.390000e-107 399.0
25 TraesCS1A01G445400 chr3A 85.897 390 37 11 1915 2291 744793784 744793400 1.390000e-107 399.0
26 TraesCS1A01G445400 chr2A 87.216 352 33 7 1945 2291 759334681 759334337 8.350000e-105 390.0
27 TraesCS1A01G445400 chr2A 89.062 64 4 2 1921 1983 7797991 7798052 2.660000e-10 76.8
28 TraesCS1A01G445400 chr5A 84.328 402 32 13 1919 2291 85354951 85355350 5.060000e-97 364.0
29 TraesCS1A01G445400 chr5A 84.639 319 43 4 1974 2291 495877432 495877119 1.860000e-81 313.0
30 TraesCS1A01G445400 chr6A 87.117 326 31 6 1970 2291 435778040 435777722 2.350000e-95 359.0
31 TraesCS1A01G445400 chr6B 77.624 362 59 15 1933 2279 17084859 17084505 1.510000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G445400 chr1A 592993333 592995822 2489 False 1951.000000 3142 100.000000 1 2490 2 chr1A.!!$F2 2489
1 TraesCS1A01G445400 chr1A 592924908 592925990 1082 False 1123.000000 1123 85.387000 790 1918 1 chr1A.!!$F1 1128
2 TraesCS1A01G445400 chr1A 592099677 592100426 749 True 388.500000 640 87.068000 790 1481 2 chr1A.!!$R2 691
3 TraesCS1A01G445400 chr1B 687530470 687532581 2111 False 877.333333 1781 95.844667 1 2490 3 chr1B.!!$F2 2489
4 TraesCS1A01G445400 chr1B 686853331 686854015 684 True 628.000000 628 83.843000 821 1481 1 chr1B.!!$R2 660
5 TraesCS1A01G445400 chr1D 494306649 494307751 1102 False 1236.000000 1236 86.895000 790 1918 1 chr1D.!!$F1 1128
6 TraesCS1A01G445400 chr1D 494348976 494350864 1888 False 836.000000 1729 96.121333 45 2490 3 chr1D.!!$F2 2445
7 TraesCS1A01G445400 chr1D 493782051 493782789 738 True 400.500000 643 86.718000 790 1481 2 chr1D.!!$R1 691
8 TraesCS1A01G445400 chrUn 290638156 290639026 870 True 1050.000000 1050 88.414000 792 1674 1 chrUn.!!$R1 882
9 TraesCS1A01G445400 chrUn 290643881 290644751 870 True 1050.000000 1050 88.414000 792 1674 1 chrUn.!!$R2 882
10 TraesCS1A01G445400 chrUn 320337438 320338308 870 False 1050.000000 1050 88.414000 792 1674 1 chrUn.!!$F1 882

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 172 2.143122 TCTTGTTCTTGCACCATCGAC 58.857 47.619 0.0 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2096 2242 0.394938 TCGGTGCTAAAGGTGCTCAA 59.605 50.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.660949 AGGCTCACATAAGCTATGTTCTTTTT 59.339 34.615 6.20 0.00 46.69 1.94
29 30 6.749118 GGCTCACATAAGCTATGTTCTTTTTG 59.251 38.462 6.20 0.00 46.69 2.44
30 31 7.308435 GCTCACATAAGCTATGTTCTTTTTGT 58.692 34.615 6.20 0.00 46.69 2.83
31 32 7.483059 GCTCACATAAGCTATGTTCTTTTTGTC 59.517 37.037 6.20 0.00 46.69 3.18
163 172 2.143122 TCTTGTTCTTGCACCATCGAC 58.857 47.619 0.00 0.00 0.00 4.20
191 200 8.410673 TGCACTATTTTTAGTTTGGTTCCATA 57.589 30.769 0.00 0.00 0.00 2.74
270 282 5.423015 AGTAGTAGTGCATTTGGATCTGTG 58.577 41.667 0.00 0.00 0.00 3.66
280 292 5.712004 CATTTGGATCTGTGTATTGTTGCA 58.288 37.500 0.00 0.00 0.00 4.08
330 342 3.564053 TGGATCTAGCATGCATGTTGA 57.436 42.857 26.79 20.82 0.00 3.18
331 343 3.473625 TGGATCTAGCATGCATGTTGAG 58.526 45.455 26.79 19.95 0.00 3.02
338 391 4.459390 AGCATGCATGTTGAGCAATTAA 57.541 36.364 26.79 0.00 46.27 1.40
340 393 4.808895 AGCATGCATGTTGAGCAATTAATG 59.191 37.500 26.79 0.00 46.27 1.90
347 400 3.825585 TGTTGAGCAATTAATGTCTGCCA 59.174 39.130 6.93 3.35 36.73 4.92
362 415 2.938451 TCTGCCATTGTTGTCATCGATC 59.062 45.455 0.00 0.00 0.00 3.69
367 420 4.617995 GCCATTGTTGTCATCGATCCAAAA 60.618 41.667 8.25 1.73 0.00 2.44
409 464 4.240096 TCCGTGTTCTTTTTATCCTCGTC 58.760 43.478 0.00 0.00 0.00 4.20
410 465 4.021719 TCCGTGTTCTTTTTATCCTCGTCT 60.022 41.667 0.00 0.00 0.00 4.18
998 1098 2.926838 GCAGTTCTTGTAGCTAGCTGAC 59.073 50.000 27.68 19.54 0.00 3.51
1240 1357 7.290110 TCCCATTTCTTTCTCTTCCTTTTTC 57.710 36.000 0.00 0.00 0.00 2.29
1447 1577 1.558756 CCAGTGAGGCCTGAGATTCTT 59.441 52.381 12.00 0.00 34.23 2.52
1577 1707 1.939255 GCTCATTTCTGCTAGCTCCAC 59.061 52.381 17.23 0.00 32.18 4.02
1581 1711 1.944177 TTTCTGCTAGCTCCACTCCT 58.056 50.000 17.23 0.00 0.00 3.69
1765 1911 0.666274 ACACGTGCCTGTATGTGTCG 60.666 55.000 17.22 0.00 45.10 4.35
1825 1971 6.127054 TGTTTGGTAATTGTTTCATGGGTTGA 60.127 34.615 0.00 0.00 0.00 3.18
1845 1991 7.148239 GGGTTGAATTTCTTCTATAGTGTGGTG 60.148 40.741 0.00 0.00 32.29 4.17
1846 1992 7.390718 GGTTGAATTTCTTCTATAGTGTGGTGT 59.609 37.037 0.00 0.00 32.29 4.16
1847 1993 9.431887 GTTGAATTTCTTCTATAGTGTGGTGTA 57.568 33.333 0.00 0.00 32.29 2.90
1848 1994 8.997621 TGAATTTCTTCTATAGTGTGGTGTAC 57.002 34.615 0.00 0.00 32.29 2.90
1925 2071 8.469309 AAACATGGGAAAATATATGAGAGTGG 57.531 34.615 0.00 0.00 0.00 4.00
1926 2072 7.154191 ACATGGGAAAATATATGAGAGTGGT 57.846 36.000 0.00 0.00 0.00 4.16
1927 2073 7.586349 ACATGGGAAAATATATGAGAGTGGTT 58.414 34.615 0.00 0.00 0.00 3.67
1928 2074 8.061304 ACATGGGAAAATATATGAGAGTGGTTT 58.939 33.333 0.00 0.00 0.00 3.27
1929 2075 8.917088 CATGGGAAAATATATGAGAGTGGTTTT 58.083 33.333 0.00 0.00 0.00 2.43
1930 2076 8.893563 TGGGAAAATATATGAGAGTGGTTTTT 57.106 30.769 0.00 0.00 0.00 1.94
1931 2077 8.966868 TGGGAAAATATATGAGAGTGGTTTTTC 58.033 33.333 0.00 0.00 33.34 2.29
1932 2078 8.966868 GGGAAAATATATGAGAGTGGTTTTTCA 58.033 33.333 0.00 0.00 34.91 2.69
1934 2080 9.508567 GAAAATATATGAGAGTGGTTTTTCAGC 57.491 33.333 0.00 0.00 33.95 4.26
1935 2081 8.814038 AAATATATGAGAGTGGTTTTTCAGCT 57.186 30.769 0.00 0.00 0.00 4.24
1936 2082 8.443953 AATATATGAGAGTGGTTTTTCAGCTC 57.556 34.615 0.00 0.00 0.00 4.09
1937 2083 2.851195 TGAGAGTGGTTTTTCAGCTCC 58.149 47.619 0.00 0.00 0.00 4.70
1938 2084 2.155279 GAGAGTGGTTTTTCAGCTCCC 58.845 52.381 0.00 0.00 0.00 4.30
1939 2085 0.875059 GAGTGGTTTTTCAGCTCCCG 59.125 55.000 0.00 0.00 0.00 5.14
1940 2086 0.537371 AGTGGTTTTTCAGCTCCCGG 60.537 55.000 0.00 0.00 0.00 5.73
1941 2087 1.228429 TGGTTTTTCAGCTCCCGGG 60.228 57.895 16.85 16.85 0.00 5.73
1942 2088 1.228459 GGTTTTTCAGCTCCCGGGT 60.228 57.895 22.86 0.00 0.00 5.28
1943 2089 1.524008 GGTTTTTCAGCTCCCGGGTG 61.524 60.000 22.86 20.53 44.04 4.61
1944 2090 1.901464 TTTTTCAGCTCCCGGGTGC 60.901 57.895 35.10 35.10 42.57 5.01
1945 2091 3.860930 TTTTCAGCTCCCGGGTGCC 62.861 63.158 37.33 22.60 42.57 5.01
1947 2093 3.916438 TTCAGCTCCCGGGTGCCTA 62.916 63.158 37.33 25.54 42.57 3.93
1948 2094 3.854669 CAGCTCCCGGGTGCCTAG 61.855 72.222 37.33 25.70 36.61 3.02
1962 2108 1.680338 GCCTAGGCACACCCTTTATG 58.320 55.000 29.33 0.00 43.06 1.90
1963 2109 1.211949 GCCTAGGCACACCCTTTATGA 59.788 52.381 29.33 0.00 43.06 2.15
1964 2110 2.356741 GCCTAGGCACACCCTTTATGAA 60.357 50.000 29.33 0.00 43.06 2.57
1965 2111 3.279434 CCTAGGCACACCCTTTATGAAC 58.721 50.000 0.00 0.00 43.06 3.18
1966 2112 2.969821 AGGCACACCCTTTATGAACA 57.030 45.000 0.00 0.00 43.06 3.18
1967 2113 2.795329 AGGCACACCCTTTATGAACAG 58.205 47.619 0.00 0.00 43.06 3.16
1968 2114 2.108250 AGGCACACCCTTTATGAACAGT 59.892 45.455 0.00 0.00 43.06 3.55
1969 2115 3.329520 AGGCACACCCTTTATGAACAGTA 59.670 43.478 0.00 0.00 43.06 2.74
1970 2116 4.076394 GGCACACCCTTTATGAACAGTAA 58.924 43.478 0.00 0.00 0.00 2.24
1971 2117 4.521256 GGCACACCCTTTATGAACAGTAAA 59.479 41.667 0.00 0.00 0.00 2.01
1972 2118 5.010213 GGCACACCCTTTATGAACAGTAAAA 59.990 40.000 0.00 0.00 0.00 1.52
1973 2119 6.295067 GGCACACCCTTTATGAACAGTAAAAT 60.295 38.462 0.00 0.00 0.00 1.82
1974 2120 7.094118 GGCACACCCTTTATGAACAGTAAAATA 60.094 37.037 0.00 0.00 0.00 1.40
1975 2121 8.301002 GCACACCCTTTATGAACAGTAAAATAA 58.699 33.333 0.00 0.00 0.00 1.40
2001 2147 7.846644 AAAAATCTGAACTTTGCAACATCAA 57.153 28.000 0.00 0.00 0.00 2.57
2002 2148 7.846644 AAAATCTGAACTTTGCAACATCAAA 57.153 28.000 0.00 0.00 35.01 2.69
2003 2149 8.441312 AAAATCTGAACTTTGCAACATCAAAT 57.559 26.923 0.00 0.00 35.64 2.32
2004 2150 9.545105 AAAATCTGAACTTTGCAACATCAAATA 57.455 25.926 0.00 0.00 35.64 1.40
2005 2151 9.715121 AAATCTGAACTTTGCAACATCAAATAT 57.285 25.926 0.00 0.00 35.64 1.28
2006 2152 8.697846 ATCTGAACTTTGCAACATCAAATATG 57.302 30.769 0.00 0.00 35.64 1.78
2007 2153 7.884257 TCTGAACTTTGCAACATCAAATATGA 58.116 30.769 0.00 0.00 40.57 2.15
2009 2155 8.692110 TGAACTTTGCAACATCAAATATGATC 57.308 30.769 0.00 0.00 44.53 2.92
2010 2156 7.485595 TGAACTTTGCAACATCAAATATGATCG 59.514 33.333 0.00 0.00 44.53 3.69
2011 2157 7.087409 ACTTTGCAACATCAAATATGATCGA 57.913 32.000 0.00 0.00 44.53 3.59
2012 2158 7.537715 ACTTTGCAACATCAAATATGATCGAA 58.462 30.769 0.00 0.00 44.53 3.71
2013 2159 7.485913 ACTTTGCAACATCAAATATGATCGAAC 59.514 33.333 0.00 0.00 44.53 3.95
2014 2160 6.682423 TGCAACATCAAATATGATCGAACT 57.318 33.333 0.00 0.00 44.53 3.01
2015 2161 7.087409 TGCAACATCAAATATGATCGAACTT 57.913 32.000 0.00 0.00 44.53 2.66
2016 2162 8.207521 TGCAACATCAAATATGATCGAACTTA 57.792 30.769 0.00 0.00 44.53 2.24
2017 2163 8.672815 TGCAACATCAAATATGATCGAACTTAA 58.327 29.630 0.00 0.00 44.53 1.85
2018 2164 9.669353 GCAACATCAAATATGATCGAACTTAAT 57.331 29.630 0.00 0.00 44.53 1.40
2024 2170 8.988934 TCAAATATGATCGAACTTAATAGGTGC 58.011 33.333 0.00 0.00 0.00 5.01
2025 2171 8.993121 CAAATATGATCGAACTTAATAGGTGCT 58.007 33.333 0.00 0.00 0.00 4.40
2026 2172 9.561069 AAATATGATCGAACTTAATAGGTGCTT 57.439 29.630 0.00 0.00 0.00 3.91
2027 2173 6.851222 ATGATCGAACTTAATAGGTGCTTG 57.149 37.500 0.00 0.00 0.00 4.01
2028 2174 4.570772 TGATCGAACTTAATAGGTGCTTGC 59.429 41.667 0.00 0.00 0.00 4.01
2029 2175 3.932822 TCGAACTTAATAGGTGCTTGCA 58.067 40.909 0.00 0.00 0.00 4.08
2030 2176 4.320023 TCGAACTTAATAGGTGCTTGCAA 58.680 39.130 0.00 0.00 0.00 4.08
2031 2177 4.391830 TCGAACTTAATAGGTGCTTGCAAG 59.608 41.667 22.44 22.44 0.00 4.01
2032 2178 4.154195 CGAACTTAATAGGTGCTTGCAAGT 59.846 41.667 26.55 10.25 0.00 3.16
2033 2179 5.334879 CGAACTTAATAGGTGCTTGCAAGTT 60.335 40.000 26.55 14.48 37.43 2.66
2034 2180 6.405278 AACTTAATAGGTGCTTGCAAGTTT 57.595 33.333 26.55 12.61 32.41 2.66
2035 2181 6.405278 ACTTAATAGGTGCTTGCAAGTTTT 57.595 33.333 26.55 12.93 0.00 2.43
2036 2182 6.447162 ACTTAATAGGTGCTTGCAAGTTTTC 58.553 36.000 26.55 11.22 0.00 2.29
2037 2183 4.935352 AATAGGTGCTTGCAAGTTTTCA 57.065 36.364 26.55 13.72 0.00 2.69
2038 2184 5.473066 AATAGGTGCTTGCAAGTTTTCAT 57.527 34.783 26.55 14.34 0.00 2.57
2039 2185 6.588719 AATAGGTGCTTGCAAGTTTTCATA 57.411 33.333 26.55 15.79 0.00 2.15
2040 2186 4.243007 AGGTGCTTGCAAGTTTTCATAC 57.757 40.909 26.55 12.93 0.00 2.39
2041 2187 3.005791 AGGTGCTTGCAAGTTTTCATACC 59.994 43.478 26.55 20.23 0.00 2.73
2042 2188 3.243704 GGTGCTTGCAAGTTTTCATACCA 60.244 43.478 26.55 10.52 0.00 3.25
2043 2189 4.367450 GTGCTTGCAAGTTTTCATACCAA 58.633 39.130 26.55 0.00 0.00 3.67
2044 2190 4.808364 GTGCTTGCAAGTTTTCATACCAAA 59.192 37.500 26.55 0.00 0.00 3.28
2045 2191 5.293079 GTGCTTGCAAGTTTTCATACCAAAA 59.707 36.000 26.55 0.00 0.00 2.44
2046 2192 5.877012 TGCTTGCAAGTTTTCATACCAAAAA 59.123 32.000 26.55 0.00 0.00 1.94
2066 2212 5.966742 AAAAACCATTTGAGGAGCTCTAC 57.033 39.130 14.64 8.60 0.00 2.59
2067 2213 4.640771 AAACCATTTGAGGAGCTCTACA 57.359 40.909 14.64 11.18 0.00 2.74
2068 2214 3.618690 ACCATTTGAGGAGCTCTACAC 57.381 47.619 14.64 3.59 0.00 2.90
2069 2215 2.906389 ACCATTTGAGGAGCTCTACACA 59.094 45.455 14.64 7.73 0.00 3.72
2070 2216 3.265791 CCATTTGAGGAGCTCTACACAC 58.734 50.000 14.64 0.00 0.00 3.82
2071 2217 2.724977 TTTGAGGAGCTCTACACACG 57.275 50.000 14.64 0.00 0.00 4.49
2072 2218 1.905637 TTGAGGAGCTCTACACACGA 58.094 50.000 14.64 0.00 0.00 4.35
2073 2219 1.905637 TGAGGAGCTCTACACACGAA 58.094 50.000 14.64 0.00 0.00 3.85
2074 2220 2.235891 TGAGGAGCTCTACACACGAAA 58.764 47.619 14.64 0.00 0.00 3.46
2075 2221 2.626266 TGAGGAGCTCTACACACGAAAA 59.374 45.455 14.64 0.00 0.00 2.29
2076 2222 3.246619 GAGGAGCTCTACACACGAAAAG 58.753 50.000 14.64 0.00 0.00 2.27
2077 2223 2.028930 AGGAGCTCTACACACGAAAAGG 60.029 50.000 14.64 0.00 0.00 3.11
2078 2224 2.029290 GGAGCTCTACACACGAAAAGGA 60.029 50.000 14.64 0.00 0.00 3.36
2079 2225 3.368531 GGAGCTCTACACACGAAAAGGAT 60.369 47.826 14.64 0.00 0.00 3.24
2080 2226 3.851098 AGCTCTACACACGAAAAGGATC 58.149 45.455 0.00 0.00 0.00 3.36
2081 2227 3.511934 AGCTCTACACACGAAAAGGATCT 59.488 43.478 0.00 0.00 0.00 2.75
2082 2228 3.860536 GCTCTACACACGAAAAGGATCTC 59.139 47.826 0.00 0.00 0.00 2.75
2083 2229 4.618460 GCTCTACACACGAAAAGGATCTCA 60.618 45.833 0.00 0.00 0.00 3.27
2084 2230 5.060662 TCTACACACGAAAAGGATCTCAG 57.939 43.478 0.00 0.00 0.00 3.35
2085 2231 3.753294 ACACACGAAAAGGATCTCAGT 57.247 42.857 0.00 0.00 0.00 3.41
2086 2232 3.393800 ACACACGAAAAGGATCTCAGTG 58.606 45.455 0.00 0.00 0.00 3.66
2087 2233 3.181465 ACACACGAAAAGGATCTCAGTGT 60.181 43.478 0.00 0.00 41.31 3.55
2088 2234 3.809832 CACACGAAAAGGATCTCAGTGTT 59.190 43.478 0.00 0.00 39.02 3.32
2089 2235 4.273480 CACACGAAAAGGATCTCAGTGTTT 59.727 41.667 0.00 0.00 39.02 2.83
2090 2236 5.465390 CACACGAAAAGGATCTCAGTGTTTA 59.535 40.000 0.00 0.00 39.02 2.01
2091 2237 6.018262 CACACGAAAAGGATCTCAGTGTTTAA 60.018 38.462 0.00 0.00 39.02 1.52
2092 2238 6.540914 ACACGAAAAGGATCTCAGTGTTTAAA 59.459 34.615 0.00 0.00 38.03 1.52
2093 2239 7.228706 ACACGAAAAGGATCTCAGTGTTTAAAT 59.771 33.333 0.00 0.00 38.03 1.40
2094 2240 8.076178 CACGAAAAGGATCTCAGTGTTTAAATT 58.924 33.333 0.00 0.00 0.00 1.82
2095 2241 8.630037 ACGAAAAGGATCTCAGTGTTTAAATTT 58.370 29.630 0.00 0.00 0.00 1.82
2096 2242 9.463443 CGAAAAGGATCTCAGTGTTTAAATTTT 57.537 29.630 0.00 0.00 0.00 1.82
2100 2246 9.971922 AAGGATCTCAGTGTTTAAATTTTTGAG 57.028 29.630 0.00 12.18 33.63 3.02
2101 2247 8.084684 AGGATCTCAGTGTTTAAATTTTTGAGC 58.915 33.333 0.00 3.48 32.67 4.26
2102 2248 7.867403 GGATCTCAGTGTTTAAATTTTTGAGCA 59.133 33.333 0.00 0.00 32.67 4.26
2103 2249 7.985634 TCTCAGTGTTTAAATTTTTGAGCAC 57.014 32.000 0.00 6.67 37.87 4.40
2104 2250 6.978080 TCTCAGTGTTTAAATTTTTGAGCACC 59.022 34.615 9.92 0.00 38.18 5.01
2105 2251 6.872920 TCAGTGTTTAAATTTTTGAGCACCT 58.127 32.000 9.92 0.00 38.18 4.00
2106 2252 7.327214 TCAGTGTTTAAATTTTTGAGCACCTT 58.673 30.769 9.92 0.00 38.18 3.50
2107 2253 7.821846 TCAGTGTTTAAATTTTTGAGCACCTTT 59.178 29.630 9.92 0.00 38.18 3.11
2108 2254 9.092876 CAGTGTTTAAATTTTTGAGCACCTTTA 57.907 29.630 9.92 0.00 38.18 1.85
2109 2255 9.313118 AGTGTTTAAATTTTTGAGCACCTTTAG 57.687 29.630 9.92 0.00 38.18 1.85
2110 2256 8.061857 GTGTTTAAATTTTTGAGCACCTTTAGC 58.938 33.333 0.00 0.00 33.76 3.09
2111 2257 7.766278 TGTTTAAATTTTTGAGCACCTTTAGCA 59.234 29.630 0.00 0.00 0.00 3.49
2112 2258 7.707774 TTAAATTTTTGAGCACCTTTAGCAC 57.292 32.000 0.00 0.00 0.00 4.40
2113 2259 3.726291 TTTTTGAGCACCTTTAGCACC 57.274 42.857 0.00 0.00 0.00 5.01
2114 2260 1.234821 TTTGAGCACCTTTAGCACCG 58.765 50.000 0.00 0.00 0.00 4.94
2115 2261 0.394938 TTGAGCACCTTTAGCACCGA 59.605 50.000 0.00 0.00 0.00 4.69
2116 2262 0.394938 TGAGCACCTTTAGCACCGAA 59.605 50.000 0.00 0.00 0.00 4.30
2117 2263 1.202710 TGAGCACCTTTAGCACCGAAA 60.203 47.619 0.00 0.00 0.00 3.46
2118 2264 2.084546 GAGCACCTTTAGCACCGAAAT 58.915 47.619 0.00 0.00 0.00 2.17
2119 2265 3.267483 GAGCACCTTTAGCACCGAAATA 58.733 45.455 0.00 0.00 0.00 1.40
2120 2266 3.877508 GAGCACCTTTAGCACCGAAATAT 59.122 43.478 0.00 0.00 0.00 1.28
2121 2267 3.627577 AGCACCTTTAGCACCGAAATATG 59.372 43.478 0.00 0.00 0.00 1.78
2122 2268 3.625764 GCACCTTTAGCACCGAAATATGA 59.374 43.478 0.00 0.00 0.00 2.15
2123 2269 4.095782 GCACCTTTAGCACCGAAATATGAA 59.904 41.667 0.00 0.00 0.00 2.57
2124 2270 5.392595 GCACCTTTAGCACCGAAATATGAAA 60.393 40.000 0.00 0.00 0.00 2.69
2125 2271 6.027749 CACCTTTAGCACCGAAATATGAAAC 58.972 40.000 0.00 0.00 0.00 2.78
2126 2272 5.944007 ACCTTTAGCACCGAAATATGAAACT 59.056 36.000 0.00 0.00 0.00 2.66
2127 2273 6.093633 ACCTTTAGCACCGAAATATGAAACTC 59.906 38.462 0.00 0.00 0.00 3.01
2128 2274 5.712217 TTAGCACCGAAATATGAAACTCG 57.288 39.130 0.00 0.00 0.00 4.18
2129 2275 3.596214 AGCACCGAAATATGAAACTCGT 58.404 40.909 0.00 0.00 0.00 4.18
2130 2276 4.000988 AGCACCGAAATATGAAACTCGTT 58.999 39.130 0.00 0.00 0.00 3.85
2131 2277 4.454504 AGCACCGAAATATGAAACTCGTTT 59.545 37.500 0.00 0.00 35.14 3.60
2132 2278 4.553429 GCACCGAAATATGAAACTCGTTTG 59.447 41.667 0.00 0.00 32.11 2.93
2133 2279 5.685841 CACCGAAATATGAAACTCGTTTGT 58.314 37.500 0.00 0.00 32.11 2.83
2134 2280 5.563751 CACCGAAATATGAAACTCGTTTGTG 59.436 40.000 0.00 0.00 32.11 3.33
2135 2281 4.553429 CCGAAATATGAAACTCGTTTGTGC 59.447 41.667 0.00 0.00 32.11 4.57
2136 2282 5.143660 CGAAATATGAAACTCGTTTGTGCA 58.856 37.500 0.00 0.00 32.11 4.57
2137 2283 5.058008 CGAAATATGAAACTCGTTTGTGCAC 59.942 40.000 10.75 10.75 32.11 4.57
2138 2284 2.774439 ATGAAACTCGTTTGTGCACC 57.226 45.000 15.69 0.00 32.11 5.01
2139 2285 1.745232 TGAAACTCGTTTGTGCACCT 58.255 45.000 15.69 0.00 32.11 4.00
2140 2286 2.088423 TGAAACTCGTTTGTGCACCTT 58.912 42.857 15.69 0.00 32.11 3.50
2141 2287 2.490115 TGAAACTCGTTTGTGCACCTTT 59.510 40.909 15.69 0.41 32.11 3.11
2142 2288 2.844122 AACTCGTTTGTGCACCTTTC 57.156 45.000 15.69 1.42 0.00 2.62
2143 2289 2.038387 ACTCGTTTGTGCACCTTTCT 57.962 45.000 15.69 0.00 0.00 2.52
2144 2290 1.940613 ACTCGTTTGTGCACCTTTCTC 59.059 47.619 15.69 0.00 0.00 2.87
2145 2291 2.213499 CTCGTTTGTGCACCTTTCTCT 58.787 47.619 15.69 0.00 0.00 3.10
2146 2292 3.181469 ACTCGTTTGTGCACCTTTCTCTA 60.181 43.478 15.69 0.00 0.00 2.43
2147 2293 3.128349 TCGTTTGTGCACCTTTCTCTAC 58.872 45.455 15.69 0.06 0.00 2.59
2148 2294 2.869801 CGTTTGTGCACCTTTCTCTACA 59.130 45.455 15.69 0.00 0.00 2.74
2149 2295 3.498397 CGTTTGTGCACCTTTCTCTACAT 59.502 43.478 15.69 0.00 0.00 2.29
2150 2296 4.611355 CGTTTGTGCACCTTTCTCTACATG 60.611 45.833 15.69 0.00 0.00 3.21
2151 2297 4.350368 TTGTGCACCTTTCTCTACATGA 57.650 40.909 15.69 0.00 0.00 3.07
2152 2298 4.558226 TGTGCACCTTTCTCTACATGAT 57.442 40.909 15.69 0.00 0.00 2.45
2153 2299 5.675684 TGTGCACCTTTCTCTACATGATA 57.324 39.130 15.69 0.00 0.00 2.15
2154 2300 6.239217 TGTGCACCTTTCTCTACATGATAT 57.761 37.500 15.69 0.00 0.00 1.63
2155 2301 6.653020 TGTGCACCTTTCTCTACATGATATT 58.347 36.000 15.69 0.00 0.00 1.28
2156 2302 7.112122 TGTGCACCTTTCTCTACATGATATTT 58.888 34.615 15.69 0.00 0.00 1.40
2157 2303 7.611467 TGTGCACCTTTCTCTACATGATATTTT 59.389 33.333 15.69 0.00 0.00 1.82
2158 2304 7.912250 GTGCACCTTTCTCTACATGATATTTTG 59.088 37.037 5.22 0.00 0.00 2.44
2159 2305 7.067372 TGCACCTTTCTCTACATGATATTTTGG 59.933 37.037 0.00 0.00 0.00 3.28
2160 2306 7.420800 CACCTTTCTCTACATGATATTTTGGC 58.579 38.462 0.00 0.00 0.00 4.52
2161 2307 7.067372 CACCTTTCTCTACATGATATTTTGGCA 59.933 37.037 0.00 0.00 0.00 4.92
2162 2308 7.781693 ACCTTTCTCTACATGATATTTTGGCAT 59.218 33.333 0.00 0.00 0.00 4.40
2163 2309 8.080417 CCTTTCTCTACATGATATTTTGGCATG 58.920 37.037 0.00 0.00 43.70 4.06
2164 2310 8.750515 TTTCTCTACATGATATTTTGGCATGA 57.249 30.769 0.00 0.00 41.35 3.07
2165 2311 8.750515 TTCTCTACATGATATTTTGGCATGAA 57.249 30.769 0.00 0.00 41.35 2.57
2166 2312 8.750515 TCTCTACATGATATTTTGGCATGAAA 57.249 30.769 0.00 0.00 41.35 2.69
2167 2313 9.187996 TCTCTACATGATATTTTGGCATGAAAA 57.812 29.630 0.00 0.00 41.35 2.29
2168 2314 9.241317 CTCTACATGATATTTTGGCATGAAAAC 57.759 33.333 0.00 0.00 41.35 2.43
2169 2315 8.970020 TCTACATGATATTTTGGCATGAAAACT 58.030 29.630 0.00 0.00 41.35 2.66
2170 2316 9.590451 CTACATGATATTTTGGCATGAAAACTT 57.410 29.630 0.00 0.00 41.35 2.66
2171 2317 8.259049 ACATGATATTTTGGCATGAAAACTTG 57.741 30.769 0.00 0.00 41.35 3.16
2172 2318 6.724694 TGATATTTTGGCATGAAAACTTGC 57.275 33.333 0.00 0.00 0.00 4.01
2173 2319 6.228995 TGATATTTTGGCATGAAAACTTGCA 58.771 32.000 0.00 0.00 0.00 4.08
2174 2320 6.709397 TGATATTTTGGCATGAAAACTTGCAA 59.291 30.769 0.00 0.00 0.00 4.08
2175 2321 4.879104 TTTTGGCATGAAAACTTGCAAG 57.121 36.364 24.84 24.84 0.00 4.01
2176 2322 3.815856 TTGGCATGAAAACTTGCAAGA 57.184 38.095 32.50 10.47 0.00 3.02
2177 2323 3.815856 TGGCATGAAAACTTGCAAGAA 57.184 38.095 32.50 12.37 0.00 2.52
2178 2324 3.456280 TGGCATGAAAACTTGCAAGAAC 58.544 40.909 32.50 18.53 0.00 3.01
2179 2325 2.802247 GGCATGAAAACTTGCAAGAACC 59.198 45.455 32.50 17.25 0.00 3.62
2180 2326 3.456280 GCATGAAAACTTGCAAGAACCA 58.544 40.909 32.50 21.64 0.00 3.67
2181 2327 3.870419 GCATGAAAACTTGCAAGAACCAA 59.130 39.130 32.50 14.76 0.00 3.67
2182 2328 4.512571 GCATGAAAACTTGCAAGAACCAAT 59.487 37.500 32.50 16.26 0.00 3.16
2183 2329 5.695816 GCATGAAAACTTGCAAGAACCAATA 59.304 36.000 32.50 12.27 0.00 1.90
2184 2330 6.202570 GCATGAAAACTTGCAAGAACCAATAA 59.797 34.615 32.50 10.28 0.00 1.40
2185 2331 7.254727 GCATGAAAACTTGCAAGAACCAATAAA 60.255 33.333 32.50 9.01 0.00 1.40
2186 2332 7.769272 TGAAAACTTGCAAGAACCAATAAAG 57.231 32.000 32.50 2.47 0.00 1.85
2187 2333 7.327214 TGAAAACTTGCAAGAACCAATAAAGT 58.673 30.769 32.50 3.19 0.00 2.66
2188 2334 7.821846 TGAAAACTTGCAAGAACCAATAAAGTT 59.178 29.630 32.50 9.75 37.84 2.66
2189 2335 8.560355 AAAACTTGCAAGAACCAATAAAGTTT 57.440 26.923 32.50 15.17 44.11 2.66
2190 2336 7.538303 AACTTGCAAGAACCAATAAAGTTTG 57.462 32.000 32.50 0.97 33.78 2.93
2191 2337 6.872920 ACTTGCAAGAACCAATAAAGTTTGA 58.127 32.000 32.50 0.00 0.00 2.69
2192 2338 6.756542 ACTTGCAAGAACCAATAAAGTTTGAC 59.243 34.615 32.50 0.00 0.00 3.18
2193 2339 5.596845 TGCAAGAACCAATAAAGTTTGACC 58.403 37.500 0.00 0.00 0.00 4.02
2194 2340 5.127845 TGCAAGAACCAATAAAGTTTGACCA 59.872 36.000 0.00 0.00 0.00 4.02
2195 2341 6.183360 TGCAAGAACCAATAAAGTTTGACCAT 60.183 34.615 0.00 0.00 0.00 3.55
2196 2342 6.366061 GCAAGAACCAATAAAGTTTGACCATC 59.634 38.462 0.00 0.00 0.00 3.51
2197 2343 7.661040 CAAGAACCAATAAAGTTTGACCATCT 58.339 34.615 0.00 0.00 0.00 2.90
2198 2344 7.839680 AGAACCAATAAAGTTTGACCATCTT 57.160 32.000 0.00 0.00 0.00 2.40
2199 2345 8.250143 AGAACCAATAAAGTTTGACCATCTTT 57.750 30.769 0.00 0.00 35.86 2.52
2200 2346 8.143835 AGAACCAATAAAGTTTGACCATCTTTG 58.856 33.333 0.00 0.00 34.09 2.77
2201 2347 7.595819 ACCAATAAAGTTTGACCATCTTTGA 57.404 32.000 0.00 0.00 34.09 2.69
2202 2348 8.193953 ACCAATAAAGTTTGACCATCTTTGAT 57.806 30.769 0.00 0.00 34.09 2.57
2203 2349 8.090214 ACCAATAAAGTTTGACCATCTTTGATG 58.910 33.333 0.00 0.92 34.09 3.07
2204 2350 8.090214 CCAATAAAGTTTGACCATCTTTGATGT 58.910 33.333 0.00 0.00 34.09 3.06
2205 2351 9.480053 CAATAAAGTTTGACCATCTTTGATGTT 57.520 29.630 0.00 0.00 34.09 2.71
2206 2352 9.480053 AATAAAGTTTGACCATCTTTGATGTTG 57.520 29.630 0.00 0.00 34.09 3.33
2207 2353 4.874970 AGTTTGACCATCTTTGATGTTGC 58.125 39.130 6.78 0.00 0.00 4.17
2208 2354 4.341806 AGTTTGACCATCTTTGATGTTGCA 59.658 37.500 6.78 0.00 0.00 4.08
2209 2355 4.933505 TTGACCATCTTTGATGTTGCAA 57.066 36.364 0.00 0.00 0.00 4.08
2210 2356 4.933505 TGACCATCTTTGATGTTGCAAA 57.066 36.364 0.00 0.00 36.43 3.68
2220 2366 7.473027 CTTTGATGTTGCAAAGTTTCAGATT 57.527 32.000 0.00 0.00 45.97 2.40
2221 2367 7.846644 TTTGATGTTGCAAAGTTTCAGATTT 57.153 28.000 0.00 0.00 33.16 2.17
2222 2368 7.846644 TTGATGTTGCAAAGTTTCAGATTTT 57.153 28.000 0.00 0.00 0.00 1.82
2223 2369 7.846644 TGATGTTGCAAAGTTTCAGATTTTT 57.153 28.000 0.00 0.00 0.00 1.94
2257 2403 7.938140 TTTTGGATTTACTGTTCATAGAGGG 57.062 36.000 0.00 0.00 0.00 4.30
2258 2404 6.636454 TTGGATTTACTGTTCATAGAGGGT 57.364 37.500 0.00 0.00 0.00 4.34
2259 2405 5.989477 TGGATTTACTGTTCATAGAGGGTG 58.011 41.667 0.00 0.00 0.00 4.61
2260 2406 4.816925 GGATTTACTGTTCATAGAGGGTGC 59.183 45.833 0.00 0.00 0.00 5.01
2261 2407 3.906720 TTACTGTTCATAGAGGGTGCC 57.093 47.619 0.00 0.00 0.00 5.01
2262 2408 1.958288 ACTGTTCATAGAGGGTGCCT 58.042 50.000 0.00 0.00 36.03 4.75
2263 2409 3.116096 ACTGTTCATAGAGGGTGCCTA 57.884 47.619 0.00 0.00 31.76 3.93
2264 2410 3.034635 ACTGTTCATAGAGGGTGCCTAG 58.965 50.000 0.00 0.00 31.76 3.02
2265 2411 2.366916 CTGTTCATAGAGGGTGCCTAGG 59.633 54.545 3.67 3.67 31.76 3.02
2266 2412 1.070914 GTTCATAGAGGGTGCCTAGGC 59.929 57.143 27.71 27.71 42.35 3.93
2278 2424 3.854669 CTAGGCACCCGGGAGCTG 61.855 72.222 36.82 24.42 32.43 4.24
2279 2425 4.715130 TAGGCACCCGGGAGCTGT 62.715 66.667 36.82 27.32 32.43 4.40
2281 2427 2.808761 TAGGCACCCGGGAGCTGTTA 62.809 60.000 36.82 24.60 32.43 2.41
2282 2428 2.436115 GCACCCGGGAGCTGTTAC 60.436 66.667 32.83 5.42 0.00 2.50
2283 2429 3.065306 CACCCGGGAGCTGTTACA 58.935 61.111 32.02 0.00 0.00 2.41
2284 2430 1.375523 CACCCGGGAGCTGTTACAC 60.376 63.158 32.02 0.00 0.00 2.90
2285 2431 2.267961 CCCGGGAGCTGTTACACC 59.732 66.667 18.48 0.00 0.00 4.16
2286 2432 2.291043 CCCGGGAGCTGTTACACCT 61.291 63.158 18.48 0.00 0.00 4.00
2287 2433 1.677552 CCGGGAGCTGTTACACCTT 59.322 57.895 0.00 0.00 0.00 3.50
2288 2434 0.036306 CCGGGAGCTGTTACACCTTT 59.964 55.000 0.00 0.00 0.00 3.11
2289 2435 1.439679 CGGGAGCTGTTACACCTTTC 58.560 55.000 0.00 0.00 0.00 2.62
2290 2436 1.002087 CGGGAGCTGTTACACCTTTCT 59.998 52.381 0.00 0.00 0.00 2.52
2291 2437 2.550208 CGGGAGCTGTTACACCTTTCTT 60.550 50.000 0.00 0.00 0.00 2.52
2292 2438 2.814336 GGGAGCTGTTACACCTTTCTTG 59.186 50.000 0.00 0.00 0.00 3.02
2293 2439 3.496160 GGGAGCTGTTACACCTTTCTTGA 60.496 47.826 0.00 0.00 0.00 3.02
2294 2440 4.134563 GGAGCTGTTACACCTTTCTTGAA 58.865 43.478 0.00 0.00 0.00 2.69
2295 2441 4.578928 GGAGCTGTTACACCTTTCTTGAAA 59.421 41.667 0.00 0.00 0.00 2.69
2296 2442 5.241728 GGAGCTGTTACACCTTTCTTGAAAT 59.758 40.000 0.00 0.00 0.00 2.17
2297 2443 6.430000 GGAGCTGTTACACCTTTCTTGAAATA 59.570 38.462 0.00 0.00 0.00 1.40
2298 2444 7.121315 GGAGCTGTTACACCTTTCTTGAAATAT 59.879 37.037 0.00 0.00 0.00 1.28
2399 2545 3.358111 TGGACTGTCAACTTTGGACAA 57.642 42.857 10.38 0.00 44.04 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.066781 AGGAAAATAGAAACAGAAAAGGGACA 58.933 34.615 0.00 0.00 0.00 4.02
29 30 7.526142 AGGAAAATAGAAACAGAAAAGGGAC 57.474 36.000 0.00 0.00 0.00 4.46
30 31 9.822727 AATAGGAAAATAGAAACAGAAAAGGGA 57.177 29.630 0.00 0.00 0.00 4.20
143 152 2.143122 GTCGATGGTGCAAGAACAAGA 58.857 47.619 0.00 0.00 0.00 3.02
156 165 1.290203 AAATAGTGCAGCGTCGATGG 58.710 50.000 13.06 0.00 0.00 3.51
163 172 4.794169 ACCAAACTAAAAATAGTGCAGCG 58.206 39.130 0.00 0.00 0.00 5.18
191 200 8.883731 CCTTTAACAAATCTCGATCTTGTATGT 58.116 33.333 7.18 0.00 33.05 2.29
270 282 5.633182 CCAATAACAACCAGTGCAACAATAC 59.367 40.000 0.00 0.00 41.43 1.89
280 292 2.558359 GCTTCTGCCAATAACAACCAGT 59.442 45.455 0.00 0.00 0.00 4.00
347 400 9.304731 CAATTATTTTGGATCGATGACAACAAT 57.695 29.630 0.54 11.94 0.00 2.71
388 441 4.243270 AGACGAGGATAAAAAGAACACGG 58.757 43.478 0.00 0.00 0.00 4.94
917 983 6.859017 TGATCCACATGTTTCATTGATCTTG 58.141 36.000 0.00 0.00 0.00 3.02
998 1098 0.816825 CTTGAGGGACGATGCCATGG 60.817 60.000 7.63 7.63 0.00 3.66
1240 1357 6.117911 TCCAATATGTGTTATGTTCAAGCG 57.882 37.500 0.00 0.00 0.00 4.68
1447 1577 4.361783 TGACCTCCTGAATCATAGGTTCA 58.638 43.478 15.74 12.61 42.40 3.18
1494 1624 5.289595 CAAGCTAGATTATTGCCGTAGACA 58.710 41.667 0.00 0.00 0.00 3.41
1598 1728 3.067833 TCGAAACAATACGGCAACATGA 58.932 40.909 0.00 0.00 0.00 3.07
1599 1729 3.416277 CTCGAAACAATACGGCAACATG 58.584 45.455 0.00 0.00 0.00 3.21
1600 1730 2.418628 CCTCGAAACAATACGGCAACAT 59.581 45.455 0.00 0.00 0.00 2.71
1825 1971 7.609056 ACGTACACCACACTATAGAAGAAATT 58.391 34.615 6.78 0.00 0.00 1.82
1845 1991 5.573146 AGCTTTATACGAAGGTGTACGTAC 58.427 41.667 18.90 18.90 45.25 3.67
1846 1992 5.818136 AGCTTTATACGAAGGTGTACGTA 57.182 39.130 0.00 0.00 46.18 3.57
1847 1993 4.708726 AGCTTTATACGAAGGTGTACGT 57.291 40.909 0.00 0.00 44.72 3.57
1848 1994 5.456822 GGTTAGCTTTATACGAAGGTGTACG 59.543 44.000 0.00 0.00 37.84 3.67
1922 2068 1.524008 CCCGGGAGCTGAAAAACCAC 61.524 60.000 18.48 0.00 0.00 4.16
1923 2069 1.228429 CCCGGGAGCTGAAAAACCA 60.228 57.895 18.48 0.00 0.00 3.67
1924 2070 1.228459 ACCCGGGAGCTGAAAAACC 60.228 57.895 32.02 0.00 0.00 3.27
1925 2071 1.956802 CACCCGGGAGCTGAAAAAC 59.043 57.895 32.02 0.00 0.00 2.43
1926 2072 1.901464 GCACCCGGGAGCTGAAAAA 60.901 57.895 32.83 0.00 0.00 1.94
1927 2073 2.282180 GCACCCGGGAGCTGAAAA 60.282 61.111 32.83 0.00 0.00 2.29
1928 2074 4.344865 GGCACCCGGGAGCTGAAA 62.345 66.667 36.82 0.00 32.43 2.69
1929 2075 3.916438 TAGGCACCCGGGAGCTGAA 62.916 63.158 36.82 22.05 32.43 3.02
1930 2076 4.392166 TAGGCACCCGGGAGCTGA 62.392 66.667 36.82 24.28 32.43 4.26
1931 2077 3.854669 CTAGGCACCCGGGAGCTG 61.855 72.222 36.82 24.42 32.43 4.24
1943 2089 1.211949 TCATAAAGGGTGTGCCTAGGC 59.788 52.381 27.71 27.71 42.35 3.93
1944 2090 3.279434 GTTCATAAAGGGTGTGCCTAGG 58.721 50.000 3.67 3.67 34.45 3.02
1945 2091 3.941483 CTGTTCATAAAGGGTGTGCCTAG 59.059 47.826 0.00 0.00 34.45 3.02
1946 2092 3.329520 ACTGTTCATAAAGGGTGTGCCTA 59.670 43.478 0.00 0.00 34.45 3.93
1947 2093 2.108250 ACTGTTCATAAAGGGTGTGCCT 59.892 45.455 0.00 0.00 34.45 4.75
1948 2094 2.514803 ACTGTTCATAAAGGGTGTGCC 58.485 47.619 0.00 0.00 0.00 5.01
1949 2095 5.699097 TTTACTGTTCATAAAGGGTGTGC 57.301 39.130 0.00 0.00 0.00 4.57
1977 2123 7.846644 TTGATGTTGCAAAGTTCAGATTTTT 57.153 28.000 0.00 0.00 0.00 1.94
1978 2124 7.846644 TTTGATGTTGCAAAGTTCAGATTTT 57.153 28.000 0.00 0.00 33.16 1.82
1979 2125 9.715121 ATATTTGATGTTGCAAAGTTCAGATTT 57.285 25.926 0.00 0.00 40.68 2.17
1980 2126 9.146984 CATATTTGATGTTGCAAAGTTCAGATT 57.853 29.630 0.00 0.00 40.68 2.40
1981 2127 8.525316 TCATATTTGATGTTGCAAAGTTCAGAT 58.475 29.630 0.00 8.06 40.68 2.90
1982 2128 7.884257 TCATATTTGATGTTGCAAAGTTCAGA 58.116 30.769 0.00 0.42 40.68 3.27
1983 2129 8.697846 ATCATATTTGATGTTGCAAAGTTCAG 57.302 30.769 0.00 0.00 41.12 3.02
1984 2130 7.485595 CGATCATATTTGATGTTGCAAAGTTCA 59.514 33.333 0.00 1.61 42.73 3.18
1985 2131 7.697710 TCGATCATATTTGATGTTGCAAAGTTC 59.302 33.333 0.00 0.00 42.73 3.01
1986 2132 7.537715 TCGATCATATTTGATGTTGCAAAGTT 58.462 30.769 0.00 0.00 42.73 2.66
1987 2133 7.087409 TCGATCATATTTGATGTTGCAAAGT 57.913 32.000 0.00 0.00 42.73 2.66
1988 2134 7.699391 AGTTCGATCATATTTGATGTTGCAAAG 59.301 33.333 0.00 0.00 42.73 2.77
1989 2135 7.537715 AGTTCGATCATATTTGATGTTGCAAA 58.462 30.769 0.00 0.00 42.73 3.68
1990 2136 7.087409 AGTTCGATCATATTTGATGTTGCAA 57.913 32.000 3.15 0.00 42.73 4.08
1991 2137 6.682423 AGTTCGATCATATTTGATGTTGCA 57.318 33.333 3.15 0.00 42.73 4.08
1992 2138 9.669353 ATTAAGTTCGATCATATTTGATGTTGC 57.331 29.630 3.15 0.00 42.73 4.17
1998 2144 8.988934 GCACCTATTAAGTTCGATCATATTTGA 58.011 33.333 0.00 0.00 36.00 2.69
1999 2145 8.993121 AGCACCTATTAAGTTCGATCATATTTG 58.007 33.333 0.00 0.00 0.00 2.32
2000 2146 9.561069 AAGCACCTATTAAGTTCGATCATATTT 57.439 29.630 0.00 0.00 0.00 1.40
2001 2147 8.993121 CAAGCACCTATTAAGTTCGATCATATT 58.007 33.333 0.00 0.00 0.00 1.28
2002 2148 7.118390 GCAAGCACCTATTAAGTTCGATCATAT 59.882 37.037 0.00 0.00 0.00 1.78
2003 2149 6.423905 GCAAGCACCTATTAAGTTCGATCATA 59.576 38.462 0.00 0.00 0.00 2.15
2004 2150 5.237344 GCAAGCACCTATTAAGTTCGATCAT 59.763 40.000 0.00 0.00 0.00 2.45
2005 2151 4.570772 GCAAGCACCTATTAAGTTCGATCA 59.429 41.667 0.00 0.00 0.00 2.92
2006 2152 4.570772 TGCAAGCACCTATTAAGTTCGATC 59.429 41.667 0.00 0.00 0.00 3.69
2007 2153 4.513442 TGCAAGCACCTATTAAGTTCGAT 58.487 39.130 0.00 0.00 0.00 3.59
2008 2154 3.932822 TGCAAGCACCTATTAAGTTCGA 58.067 40.909 0.00 0.00 0.00 3.71
2009 2155 4.154195 ACTTGCAAGCACCTATTAAGTTCG 59.846 41.667 26.27 0.00 0.00 3.95
2010 2156 5.629079 ACTTGCAAGCACCTATTAAGTTC 57.371 39.130 26.27 0.00 0.00 3.01
2011 2157 6.405278 AAACTTGCAAGCACCTATTAAGTT 57.595 33.333 26.27 6.27 38.20 2.66
2012 2158 6.040391 TGAAAACTTGCAAGCACCTATTAAGT 59.960 34.615 26.27 0.00 0.00 2.24
2013 2159 6.446318 TGAAAACTTGCAAGCACCTATTAAG 58.554 36.000 26.27 0.00 0.00 1.85
2014 2160 6.398234 TGAAAACTTGCAAGCACCTATTAA 57.602 33.333 26.27 3.28 0.00 1.40
2015 2161 6.588719 ATGAAAACTTGCAAGCACCTATTA 57.411 33.333 26.27 6.07 0.00 0.98
2016 2162 4.935352 TGAAAACTTGCAAGCACCTATT 57.065 36.364 26.27 9.09 0.00 1.73
2017 2163 5.105756 GGTATGAAAACTTGCAAGCACCTAT 60.106 40.000 26.27 16.64 0.00 2.57
2018 2164 4.217550 GGTATGAAAACTTGCAAGCACCTA 59.782 41.667 26.27 10.74 0.00 3.08
2019 2165 3.005791 GGTATGAAAACTTGCAAGCACCT 59.994 43.478 26.27 8.45 0.00 4.00
2020 2166 3.243704 TGGTATGAAAACTTGCAAGCACC 60.244 43.478 26.27 19.20 0.00 5.01
2021 2167 3.976169 TGGTATGAAAACTTGCAAGCAC 58.024 40.909 26.27 14.60 0.00 4.40
2022 2168 4.662468 TTGGTATGAAAACTTGCAAGCA 57.338 36.364 26.27 15.91 0.00 3.91
2023 2169 5.982465 TTTTGGTATGAAAACTTGCAAGC 57.018 34.783 26.27 10.47 0.00 4.01
2044 2190 5.241728 GTGTAGAGCTCCTCAAATGGTTTTT 59.758 40.000 10.93 0.00 32.06 1.94
2045 2191 4.762251 GTGTAGAGCTCCTCAAATGGTTTT 59.238 41.667 10.93 0.00 32.06 2.43
2046 2192 4.202461 TGTGTAGAGCTCCTCAAATGGTTT 60.202 41.667 10.93 0.00 32.06 3.27
2047 2193 3.327757 TGTGTAGAGCTCCTCAAATGGTT 59.672 43.478 10.93 0.00 32.06 3.67
2048 2194 2.906389 TGTGTAGAGCTCCTCAAATGGT 59.094 45.455 10.93 0.00 32.06 3.55
2049 2195 3.265791 GTGTGTAGAGCTCCTCAAATGG 58.734 50.000 10.93 0.00 32.06 3.16
2050 2196 2.926200 CGTGTGTAGAGCTCCTCAAATG 59.074 50.000 10.93 6.90 32.06 2.32
2051 2197 2.826128 TCGTGTGTAGAGCTCCTCAAAT 59.174 45.455 10.93 0.00 32.06 2.32
2052 2198 2.235891 TCGTGTGTAGAGCTCCTCAAA 58.764 47.619 10.93 2.10 32.06 2.69
2053 2199 1.905637 TCGTGTGTAGAGCTCCTCAA 58.094 50.000 10.93 0.00 32.06 3.02
2054 2200 1.905637 TTCGTGTGTAGAGCTCCTCA 58.094 50.000 10.93 7.24 32.06 3.86
2055 2201 3.246619 CTTTTCGTGTGTAGAGCTCCTC 58.753 50.000 10.93 4.36 0.00 3.71
2056 2202 2.028930 CCTTTTCGTGTGTAGAGCTCCT 60.029 50.000 10.93 0.10 0.00 3.69
2057 2203 2.029290 TCCTTTTCGTGTGTAGAGCTCC 60.029 50.000 10.93 0.00 0.00 4.70
2058 2204 3.299340 TCCTTTTCGTGTGTAGAGCTC 57.701 47.619 5.27 5.27 0.00 4.09
2059 2205 3.511934 AGATCCTTTTCGTGTGTAGAGCT 59.488 43.478 0.00 0.00 0.00 4.09
2060 2206 3.851098 AGATCCTTTTCGTGTGTAGAGC 58.149 45.455 0.00 0.00 0.00 4.09
2061 2207 5.060662 TGAGATCCTTTTCGTGTGTAGAG 57.939 43.478 0.00 0.00 0.00 2.43
2062 2208 4.523173 ACTGAGATCCTTTTCGTGTGTAGA 59.477 41.667 0.00 0.00 0.00 2.59
2063 2209 4.623167 CACTGAGATCCTTTTCGTGTGTAG 59.377 45.833 0.00 0.00 0.00 2.74
2064 2210 4.038763 ACACTGAGATCCTTTTCGTGTGTA 59.961 41.667 0.00 0.00 34.35 2.90
2065 2211 3.181465 ACACTGAGATCCTTTTCGTGTGT 60.181 43.478 0.00 0.00 33.32 3.72
2066 2212 3.393800 ACACTGAGATCCTTTTCGTGTG 58.606 45.455 0.00 0.00 33.32 3.82
2067 2213 3.753294 ACACTGAGATCCTTTTCGTGT 57.247 42.857 0.00 0.00 0.00 4.49
2068 2214 6.539649 TTAAACACTGAGATCCTTTTCGTG 57.460 37.500 0.00 0.00 0.00 4.35
2069 2215 7.745620 ATTTAAACACTGAGATCCTTTTCGT 57.254 32.000 0.00 0.00 0.00 3.85
2070 2216 9.463443 AAAATTTAAACACTGAGATCCTTTTCG 57.537 29.630 0.00 0.00 0.00 3.46
2074 2220 9.971922 CTCAAAAATTTAAACACTGAGATCCTT 57.028 29.630 10.66 0.00 32.39 3.36
2075 2221 8.084684 GCTCAAAAATTTAAACACTGAGATCCT 58.915 33.333 16.67 0.00 32.39 3.24
2076 2222 7.867403 TGCTCAAAAATTTAAACACTGAGATCC 59.133 33.333 16.67 5.67 32.39 3.36
2077 2223 8.694394 GTGCTCAAAAATTTAAACACTGAGATC 58.306 33.333 16.67 0.00 32.39 2.75
2078 2224 7.653311 GGTGCTCAAAAATTTAAACACTGAGAT 59.347 33.333 16.67 0.00 32.39 2.75
2079 2225 6.978080 GGTGCTCAAAAATTTAAACACTGAGA 59.022 34.615 16.67 2.02 32.39 3.27
2080 2226 6.980397 AGGTGCTCAAAAATTTAAACACTGAG 59.020 34.615 11.39 11.39 33.54 3.35
2081 2227 6.872920 AGGTGCTCAAAAATTTAAACACTGA 58.127 32.000 0.00 0.00 0.00 3.41
2082 2228 7.538303 AAGGTGCTCAAAAATTTAAACACTG 57.462 32.000 0.00 0.00 0.00 3.66
2083 2229 9.313118 CTAAAGGTGCTCAAAAATTTAAACACT 57.687 29.630 0.00 0.00 0.00 3.55
2084 2230 8.061857 GCTAAAGGTGCTCAAAAATTTAAACAC 58.938 33.333 0.00 0.00 0.00 3.32
2085 2231 7.766278 TGCTAAAGGTGCTCAAAAATTTAAACA 59.234 29.630 0.00 0.00 0.00 2.83
2086 2232 8.061857 GTGCTAAAGGTGCTCAAAAATTTAAAC 58.938 33.333 0.00 0.00 0.00 2.01
2087 2233 7.225734 GGTGCTAAAGGTGCTCAAAAATTTAAA 59.774 33.333 0.00 0.00 0.00 1.52
2088 2234 6.704050 GGTGCTAAAGGTGCTCAAAAATTTAA 59.296 34.615 0.00 0.00 0.00 1.52
2089 2235 6.220201 GGTGCTAAAGGTGCTCAAAAATTTA 58.780 36.000 0.00 0.00 0.00 1.40
2090 2236 5.056480 GGTGCTAAAGGTGCTCAAAAATTT 58.944 37.500 0.00 0.00 0.00 1.82
2091 2237 4.631131 GGTGCTAAAGGTGCTCAAAAATT 58.369 39.130 0.00 0.00 0.00 1.82
2092 2238 3.305335 CGGTGCTAAAGGTGCTCAAAAAT 60.305 43.478 0.00 0.00 0.00 1.82
2093 2239 2.034053 CGGTGCTAAAGGTGCTCAAAAA 59.966 45.455 0.00 0.00 0.00 1.94
2094 2240 1.606668 CGGTGCTAAAGGTGCTCAAAA 59.393 47.619 0.00 0.00 0.00 2.44
2095 2241 1.202710 TCGGTGCTAAAGGTGCTCAAA 60.203 47.619 0.00 0.00 0.00 2.69
2096 2242 0.394938 TCGGTGCTAAAGGTGCTCAA 59.605 50.000 0.00 0.00 0.00 3.02
2097 2243 0.394938 TTCGGTGCTAAAGGTGCTCA 59.605 50.000 0.00 0.00 0.00 4.26
2098 2244 1.519408 TTTCGGTGCTAAAGGTGCTC 58.481 50.000 0.00 0.00 0.00 4.26
2099 2245 2.200373 ATTTCGGTGCTAAAGGTGCT 57.800 45.000 0.00 0.00 0.00 4.40
2100 2246 3.625764 TCATATTTCGGTGCTAAAGGTGC 59.374 43.478 0.00 0.00 0.00 5.01
2101 2247 5.811399 TTCATATTTCGGTGCTAAAGGTG 57.189 39.130 0.00 0.00 0.00 4.00
2102 2248 5.944007 AGTTTCATATTTCGGTGCTAAAGGT 59.056 36.000 0.00 0.00 0.00 3.50
2103 2249 6.436843 AGTTTCATATTTCGGTGCTAAAGG 57.563 37.500 0.00 0.00 0.00 3.11
2104 2250 6.183360 ACGAGTTTCATATTTCGGTGCTAAAG 60.183 38.462 0.00 0.00 37.38 1.85
2105 2251 5.640357 ACGAGTTTCATATTTCGGTGCTAAA 59.360 36.000 0.00 0.00 37.38 1.85
2106 2252 5.172934 ACGAGTTTCATATTTCGGTGCTAA 58.827 37.500 0.00 0.00 37.38 3.09
2107 2253 4.751060 ACGAGTTTCATATTTCGGTGCTA 58.249 39.130 0.00 0.00 37.38 3.49
2108 2254 3.596214 ACGAGTTTCATATTTCGGTGCT 58.404 40.909 0.00 0.00 37.38 4.40
2109 2255 4.336532 AACGAGTTTCATATTTCGGTGC 57.663 40.909 0.00 0.00 37.38 5.01
2110 2256 5.563751 CACAAACGAGTTTCATATTTCGGTG 59.436 40.000 0.00 0.00 37.38 4.94
2111 2257 5.685841 CACAAACGAGTTTCATATTTCGGT 58.314 37.500 0.00 0.00 37.38 4.69
2112 2258 4.553429 GCACAAACGAGTTTCATATTTCGG 59.447 41.667 0.00 0.00 37.38 4.30
2113 2259 5.058008 GTGCACAAACGAGTTTCATATTTCG 59.942 40.000 13.17 0.00 38.88 3.46
2114 2260 5.342259 GGTGCACAAACGAGTTTCATATTTC 59.658 40.000 20.43 0.00 0.00 2.17
2115 2261 5.009610 AGGTGCACAAACGAGTTTCATATTT 59.990 36.000 20.43 0.00 0.00 1.40
2116 2262 4.518970 AGGTGCACAAACGAGTTTCATATT 59.481 37.500 20.43 0.00 0.00 1.28
2117 2263 4.072131 AGGTGCACAAACGAGTTTCATAT 58.928 39.130 20.43 0.00 0.00 1.78
2118 2264 3.472652 AGGTGCACAAACGAGTTTCATA 58.527 40.909 20.43 0.00 0.00 2.15
2119 2265 2.297701 AGGTGCACAAACGAGTTTCAT 58.702 42.857 20.43 0.00 0.00 2.57
2120 2266 1.745232 AGGTGCACAAACGAGTTTCA 58.255 45.000 20.43 0.00 0.00 2.69
2121 2267 2.844122 AAGGTGCACAAACGAGTTTC 57.156 45.000 20.43 0.00 0.00 2.78
2122 2268 2.752903 AGAAAGGTGCACAAACGAGTTT 59.247 40.909 20.43 5.88 0.00 2.66
2123 2269 2.354821 GAGAAAGGTGCACAAACGAGTT 59.645 45.455 20.43 0.96 0.00 3.01
2124 2270 1.940613 GAGAAAGGTGCACAAACGAGT 59.059 47.619 20.43 0.00 0.00 4.18
2125 2271 2.213499 AGAGAAAGGTGCACAAACGAG 58.787 47.619 20.43 0.00 0.00 4.18
2126 2272 2.325583 AGAGAAAGGTGCACAAACGA 57.674 45.000 20.43 0.00 0.00 3.85
2127 2273 2.869801 TGTAGAGAAAGGTGCACAAACG 59.130 45.455 20.43 0.00 0.00 3.60
2128 2274 4.515191 TCATGTAGAGAAAGGTGCACAAAC 59.485 41.667 20.43 6.81 0.00 2.93
2129 2275 4.713553 TCATGTAGAGAAAGGTGCACAAA 58.286 39.130 20.43 0.00 0.00 2.83
2130 2276 4.350368 TCATGTAGAGAAAGGTGCACAA 57.650 40.909 20.43 0.00 0.00 3.33
2131 2277 4.558226 ATCATGTAGAGAAAGGTGCACA 57.442 40.909 20.43 0.00 0.00 4.57
2132 2278 7.559590 AAATATCATGTAGAGAAAGGTGCAC 57.440 36.000 8.80 8.80 0.00 4.57
2133 2279 7.067372 CCAAAATATCATGTAGAGAAAGGTGCA 59.933 37.037 0.00 0.00 0.00 4.57
2134 2280 7.420800 CCAAAATATCATGTAGAGAAAGGTGC 58.579 38.462 0.00 0.00 0.00 5.01
2135 2281 7.067372 TGCCAAAATATCATGTAGAGAAAGGTG 59.933 37.037 0.00 0.00 0.00 4.00
2136 2282 7.118723 TGCCAAAATATCATGTAGAGAAAGGT 58.881 34.615 0.00 0.00 0.00 3.50
2137 2283 7.572523 TGCCAAAATATCATGTAGAGAAAGG 57.427 36.000 0.00 0.00 0.00 3.11
2138 2284 8.843262 TCATGCCAAAATATCATGTAGAGAAAG 58.157 33.333 0.00 0.00 38.82 2.62
2139 2285 8.750515 TCATGCCAAAATATCATGTAGAGAAA 57.249 30.769 0.00 0.00 38.82 2.52
2140 2286 8.750515 TTCATGCCAAAATATCATGTAGAGAA 57.249 30.769 0.00 0.00 38.82 2.87
2141 2287 8.750515 TTTCATGCCAAAATATCATGTAGAGA 57.249 30.769 0.00 0.00 38.82 3.10
2142 2288 9.241317 GTTTTCATGCCAAAATATCATGTAGAG 57.759 33.333 0.00 0.00 38.82 2.43
2143 2289 8.970020 AGTTTTCATGCCAAAATATCATGTAGA 58.030 29.630 0.00 0.00 38.82 2.59
2144 2290 9.590451 AAGTTTTCATGCCAAAATATCATGTAG 57.410 29.630 0.00 0.00 38.82 2.74
2145 2291 9.368674 CAAGTTTTCATGCCAAAATATCATGTA 57.631 29.630 0.00 0.00 38.82 2.29
2146 2292 7.148373 GCAAGTTTTCATGCCAAAATATCATGT 60.148 33.333 0.00 0.00 38.40 3.21
2147 2293 7.148390 TGCAAGTTTTCATGCCAAAATATCATG 60.148 33.333 0.00 0.00 42.89 3.07
2148 2294 6.879993 TGCAAGTTTTCATGCCAAAATATCAT 59.120 30.769 0.00 0.00 42.89 2.45
2149 2295 6.228995 TGCAAGTTTTCATGCCAAAATATCA 58.771 32.000 0.00 0.00 42.89 2.15
2150 2296 6.724694 TGCAAGTTTTCATGCCAAAATATC 57.275 33.333 0.00 0.00 42.89 1.63
2151 2297 6.935771 TCTTGCAAGTTTTCATGCCAAAATAT 59.064 30.769 25.19 0.00 42.89 1.28
2152 2298 6.286758 TCTTGCAAGTTTTCATGCCAAAATA 58.713 32.000 25.19 0.00 42.89 1.40
2153 2299 5.124645 TCTTGCAAGTTTTCATGCCAAAAT 58.875 33.333 25.19 0.00 42.89 1.82
2154 2300 4.511527 TCTTGCAAGTTTTCATGCCAAAA 58.488 34.783 25.19 0.00 42.89 2.44
2155 2301 4.134379 TCTTGCAAGTTTTCATGCCAAA 57.866 36.364 25.19 0.00 42.89 3.28
2156 2302 3.815856 TCTTGCAAGTTTTCATGCCAA 57.184 38.095 25.19 0.00 42.89 4.52
2157 2303 3.456280 GTTCTTGCAAGTTTTCATGCCA 58.544 40.909 25.19 0.00 42.89 4.92
2158 2304 2.802247 GGTTCTTGCAAGTTTTCATGCC 59.198 45.455 25.19 12.66 42.89 4.40
2159 2305 3.456280 TGGTTCTTGCAAGTTTTCATGC 58.544 40.909 25.19 8.16 43.69 4.06
2160 2306 7.712264 TTATTGGTTCTTGCAAGTTTTCATG 57.288 32.000 25.19 0.00 0.00 3.07
2161 2307 7.986889 ACTTTATTGGTTCTTGCAAGTTTTCAT 59.013 29.630 25.19 15.10 0.00 2.57
2162 2308 7.327214 ACTTTATTGGTTCTTGCAAGTTTTCA 58.673 30.769 25.19 15.98 0.00 2.69
2163 2309 7.770801 ACTTTATTGGTTCTTGCAAGTTTTC 57.229 32.000 25.19 13.84 0.00 2.29
2164 2310 8.450180 CAAACTTTATTGGTTCTTGCAAGTTTT 58.550 29.630 25.19 8.85 39.69 2.43
2165 2311 7.821846 TCAAACTTTATTGGTTCTTGCAAGTTT 59.178 29.630 25.19 11.93 41.42 2.66
2166 2312 7.277760 GTCAAACTTTATTGGTTCTTGCAAGTT 59.722 33.333 25.19 6.27 35.10 2.66
2167 2313 6.756542 GTCAAACTTTATTGGTTCTTGCAAGT 59.243 34.615 25.19 8.23 0.00 3.16
2168 2314 6.200854 GGTCAAACTTTATTGGTTCTTGCAAG 59.799 38.462 20.81 20.81 0.00 4.01
2169 2315 6.045955 GGTCAAACTTTATTGGTTCTTGCAA 58.954 36.000 0.00 0.00 0.00 4.08
2170 2316 5.127845 TGGTCAAACTTTATTGGTTCTTGCA 59.872 36.000 0.00 0.00 0.00 4.08
2171 2317 5.596845 TGGTCAAACTTTATTGGTTCTTGC 58.403 37.500 0.00 0.00 0.00 4.01
2172 2318 7.661040 AGATGGTCAAACTTTATTGGTTCTTG 58.339 34.615 0.00 0.00 0.00 3.02
2173 2319 7.839680 AGATGGTCAAACTTTATTGGTTCTT 57.160 32.000 0.00 0.00 0.00 2.52
2174 2320 7.839680 AAGATGGTCAAACTTTATTGGTTCT 57.160 32.000 0.00 0.00 0.00 3.01
2175 2321 8.141268 TCAAAGATGGTCAAACTTTATTGGTTC 58.859 33.333 0.00 0.00 33.44 3.62
2176 2322 8.017418 TCAAAGATGGTCAAACTTTATTGGTT 57.983 30.769 0.00 0.00 33.44 3.67
2177 2323 7.595819 TCAAAGATGGTCAAACTTTATTGGT 57.404 32.000 0.00 0.00 33.44 3.67
2178 2324 8.090214 ACATCAAAGATGGTCAAACTTTATTGG 58.910 33.333 11.29 0.00 33.44 3.16
2179 2325 9.480053 AACATCAAAGATGGTCAAACTTTATTG 57.520 29.630 11.29 0.00 33.44 1.90
2180 2326 9.480053 CAACATCAAAGATGGTCAAACTTTATT 57.520 29.630 11.29 0.00 33.44 1.40
2181 2327 7.599998 GCAACATCAAAGATGGTCAAACTTTAT 59.400 33.333 11.29 0.00 33.44 1.40
2182 2328 6.922957 GCAACATCAAAGATGGTCAAACTTTA 59.077 34.615 11.29 0.00 33.44 1.85
2183 2329 5.754890 GCAACATCAAAGATGGTCAAACTTT 59.245 36.000 11.29 0.00 34.77 2.66
2184 2330 5.163426 TGCAACATCAAAGATGGTCAAACTT 60.163 36.000 11.29 0.00 0.00 2.66
2185 2331 4.341806 TGCAACATCAAAGATGGTCAAACT 59.658 37.500 11.29 0.00 0.00 2.66
2186 2332 4.619973 TGCAACATCAAAGATGGTCAAAC 58.380 39.130 11.29 0.00 0.00 2.93
2187 2333 4.933505 TGCAACATCAAAGATGGTCAAA 57.066 36.364 11.29 0.00 0.00 2.69
2188 2334 4.933505 TTGCAACATCAAAGATGGTCAA 57.066 36.364 11.29 8.31 0.00 3.18
2189 2335 4.933505 TTTGCAACATCAAAGATGGTCA 57.066 36.364 0.00 3.31 32.69 4.02
2197 2343 7.846644 AAATCTGAAACTTTGCAACATCAAA 57.153 28.000 0.00 0.00 35.01 2.69
2198 2344 7.846644 AAAATCTGAAACTTTGCAACATCAA 57.153 28.000 0.00 0.00 0.00 2.57
2199 2345 7.846644 AAAAATCTGAAACTTTGCAACATCA 57.153 28.000 0.00 0.47 0.00 3.07
2232 2378 7.947890 ACCCTCTATGAACAGTAAATCCAAAAA 59.052 33.333 0.00 0.00 0.00 1.94
2233 2379 7.393234 CACCCTCTATGAACAGTAAATCCAAAA 59.607 37.037 0.00 0.00 0.00 2.44
2234 2380 6.884295 CACCCTCTATGAACAGTAAATCCAAA 59.116 38.462 0.00 0.00 0.00 3.28
2235 2381 6.414732 CACCCTCTATGAACAGTAAATCCAA 58.585 40.000 0.00 0.00 0.00 3.53
2236 2382 5.629133 GCACCCTCTATGAACAGTAAATCCA 60.629 44.000 0.00 0.00 0.00 3.41
2237 2383 4.816925 GCACCCTCTATGAACAGTAAATCC 59.183 45.833 0.00 0.00 0.00 3.01
2238 2384 4.816925 GGCACCCTCTATGAACAGTAAATC 59.183 45.833 0.00 0.00 0.00 2.17
2239 2385 4.475016 AGGCACCCTCTATGAACAGTAAAT 59.525 41.667 0.00 0.00 0.00 1.40
2240 2386 3.844211 AGGCACCCTCTATGAACAGTAAA 59.156 43.478 0.00 0.00 0.00 2.01
2241 2387 3.450904 AGGCACCCTCTATGAACAGTAA 58.549 45.455 0.00 0.00 0.00 2.24
2242 2388 3.116096 AGGCACCCTCTATGAACAGTA 57.884 47.619 0.00 0.00 0.00 2.74
2243 2389 1.958288 AGGCACCCTCTATGAACAGT 58.042 50.000 0.00 0.00 0.00 3.55
2244 2390 2.366916 CCTAGGCACCCTCTATGAACAG 59.633 54.545 0.00 0.00 34.61 3.16
2245 2391 2.398588 CCTAGGCACCCTCTATGAACA 58.601 52.381 0.00 0.00 34.61 3.18
2246 2392 1.070914 GCCTAGGCACCCTCTATGAAC 59.929 57.143 29.33 0.00 41.49 3.18
2247 2393 1.424638 GCCTAGGCACCCTCTATGAA 58.575 55.000 29.33 0.00 41.49 2.57
2248 2394 3.149436 GCCTAGGCACCCTCTATGA 57.851 57.895 29.33 0.00 41.49 2.15
2261 2407 3.854669 CAGCTCCCGGGTGCCTAG 61.855 72.222 37.33 25.70 36.61 3.02
2262 2408 2.808761 TAACAGCTCCCGGGTGCCTA 62.809 60.000 37.33 25.05 46.30 3.93
2264 2410 3.712907 TAACAGCTCCCGGGTGCC 61.713 66.667 37.33 22.60 46.30 5.01
2265 2411 2.436115 GTAACAGCTCCCGGGTGC 60.436 66.667 35.10 35.10 46.30 5.01
2267 2413 2.590114 GGTGTAACAGCTCCCGGGT 61.590 63.158 22.86 1.40 39.98 5.28
2268 2414 1.838073 AAGGTGTAACAGCTCCCGGG 61.838 60.000 16.85 16.85 41.59 5.73
2269 2415 0.036306 AAAGGTGTAACAGCTCCCGG 59.964 55.000 0.00 0.00 41.59 5.73
2270 2416 1.002087 AGAAAGGTGTAACAGCTCCCG 59.998 52.381 0.00 0.00 41.59 5.14
2271 2417 2.814336 CAAGAAAGGTGTAACAGCTCCC 59.186 50.000 0.00 0.00 41.59 4.30
2272 2418 3.740115 TCAAGAAAGGTGTAACAGCTCC 58.260 45.455 0.00 0.00 41.59 4.70
2273 2419 5.751243 TTTCAAGAAAGGTGTAACAGCTC 57.249 39.130 0.00 0.00 41.59 4.09
2274 2420 9.686683 ATATATTTCAAGAAAGGTGTAACAGCT 57.313 29.630 1.48 0.00 44.48 4.24
2399 2545 1.153188 TTGATGCATGGCGGATCGT 60.153 52.632 2.46 0.00 45.05 3.73
2437 2583 1.740025 GCTTGTGGTGGAGAATGTAGC 59.260 52.381 0.00 0.00 0.00 3.58
2444 2590 0.397941 CTTGGAGCTTGTGGTGGAGA 59.602 55.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.