AutoCloner

Multiple sequence alignment - TraesCS1A01G445100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G445100	chr1A	100.000	2470	0	0	1	2470	592851083	592853552	0.000000e+00	4562.0
1	TraesCS1A01G445100	chr1A	86.667	765	75	16	785	1529	593214593	593215350	0.000000e+00	822.0
2	TraesCS1A01G445100	chr1A	86.991	761	58	11	786	1529	592977811	592978547	0.000000e+00	819.0
3	TraesCS1A01G445100	chr1A	85.286	768	77	17	785	1529	593217691	593218445	0.000000e+00	760.0
4	TraesCS1A01G445100	chr1A	84.913	517	61	6	938	1441	592994266	592994778	7.880000e-140	507.0
5	TraesCS1A01G445100	chr1A	85.668	307	30	6	2175	2470	592981455	592981758	6.630000e-81	311.0
6	TraesCS1A01G445100	chr1A	86.066	244	22	7	225	466	592923904	592924137	4.080000e-63	252.0
7	TraesCS1A01G445100	chr1A	76.268	552	79	26	1953	2470	480927798	480928331	1.900000e-61	246.0
8	TraesCS1A01G445100	chr1A	85.532	235	13	9	220	454	592977047	592977260	2.470000e-55	226.0
9	TraesCS1A01G445100	chr1A	88.636	176	11	3	225	396	592992734	592992904	3.220000e-49	206.0
10	TraesCS1A01G445100	chr1A	97.917	48	1	0	140	187	592851182	592851229	1.570000e-12	84.2
11	TraesCS1A01G445100	chr1A	97.917	48	1	0	100	147	592851222	592851269	1.570000e-12	84.2
12	TraesCS1A01G445100	chr1B	91.257	1201	63	12	647	1827	687422815	687423993	0.000000e+00	1598.0
13	TraesCS1A01G445100	chr1B	85.901	766	75	19	785	1529	687650811	687651564	0.000000e+00	785.0
14	TraesCS1A01G445100	chr1B	88.462	520	41	6	1948	2460	687424212	687424719	5.840000e-171	610.0
15	TraesCS1A01G445100	chr1B	79.492	551	76	17	1953	2470	509894937	509895483	8.400000e-95	357.0
16	TraesCS1A01G445100	chr1B	88.214	280	16	8	207	486	687422171	687422433	3.960000e-83	318.0
17	TraesCS1A01G445100	chr1B	83.983	231	19	9	225	446	687529924	687530145	3.220000e-49	206.0
18	TraesCS1A01G445100	chr1B	92.361	144	10	1	528	670	687422666	687422809	1.160000e-48	204.0
19	TraesCS1A01G445100	chr1B	94.545	55	3	0	1475	1529	687517610	687517664	4.380000e-13	86.1
20	TraesCS1A01G445100	chr1B	100.000	28	0	0	503	530	687422535	687422562	4.000000e-03	52.8
21	TraesCS1A01G445100	chr1D	93.726	1036	41	12	933	1948	494169050	494170081	0.000000e+00	1531.0
22	TraesCS1A01G445100	chr1D	87.139	762	56	12	785	1529	494327892	494328628	0.000000e+00	826.0
23	TraesCS1A01G445100	chr1D	85.864	764	82	10	786	1529	494423993	494424750	0.000000e+00	789.0
24	TraesCS1A01G445100	chr1D	91.912	544	23	2	1948	2470	494170225	494170768	0.000000e+00	741.0
25	TraesCS1A01G445100	chr1D	85.106	517	63	4	937	1441	494306795	494307309	1.310000e-142	516.0
26	TraesCS1A01G445100	chr1D	85.178	506	57	10	938	1431	494349693	494350192	1.020000e-138	503.0
27	TraesCS1A01G445100	chr1D	94.643	280	14	1	528	806	494168773	494169052	1.360000e-117	433.0
28	TraesCS1A01G445100	chr1D	83.983	462	35	19	14	460	494167957	494168394	8.220000e-110	407.0
29	TraesCS1A01G445100	chr1D	80.543	442	72	9	1988	2421	494330800	494331235	6.590000e-86	327.0
30	TraesCS1A01G445100	chr1D	84.400	250	21	9	225	466	494348366	494348605	1.910000e-56	230.0
31	TraesCS1A01G445100	chr1D	83.858	254	25	7	207	454	494423154	494423397	6.870000e-56	228.0
32	TraesCS1A01G445100	chr1D	91.781	146	8	3	342	486	494327261	494327403	1.500000e-47	200.0
33	TraesCS1A01G445100	chr1D	85.065	154	16	7	533	684	494327586	494327734	1.530000e-32	150.0
34	TraesCS1A01G445100	chrUn	88.110	656	53	10	785	1439	358968056	358967425	0.000000e+00	756.0
35	TraesCS1A01G445100	chrUn	84.526	517	66	3	937	1441	290638880	290638366	1.320000e-137	499.0
36	TraesCS1A01G445100	chrUn	84.526	517	66	3	937	1441	290644605	290644091	1.320000e-137	499.0
37	TraesCS1A01G445100	chrUn	84.716	229	24	6	227	454	358968829	358968611	4.140000e-53	219.0
38	TraesCS1A01G445100	chr2B	79.352	494	73	16	1948	2416	699294025	699293536	1.100000e-83	320.0
39	TraesCS1A01G445100	chr5D	84.034	238	25	4	2240	2467	468305562	468305328	1.490000e-52	217.0
40	TraesCS1A01G445100	chr7B	87.079	178	22	1	2247	2424	591690499	591690675	1.500000e-47	200.0
41	TraesCS1A01G445100	chr3D	76.639	244	54	3	2181	2424	378237979	378237739	5.540000e-27	132.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G445100	chr1A	592851083	592853552	2469	False	1576.80	4562	98.611333	1	2470	3	chr1A.!!$F3	2469
1	TraesCS1A01G445100	chr1A	593214593	593218445	3852	False	791.00	822	85.976500	785	1529	2	chr1A.!!$F6	744
2	TraesCS1A01G445100	chr1A	592977047	592981758	4711	False	452.00	819	86.063667	220	2470	3	chr1A.!!$F4	2250
3	TraesCS1A01G445100	chr1A	592992734	592994778	2044	False	356.50	507	86.774500	225	1441	2	chr1A.!!$F5	1216
4	TraesCS1A01G445100	chr1A	480927798	480928331	533	False	246.00	246	76.268000	1953	2470	1	chr1A.!!$F1	517
5	TraesCS1A01G445100	chr1B	687650811	687651564	753	False	785.00	785	85.901000	785	1529	1	chr1B.!!$F4	744
6	TraesCS1A01G445100	chr1B	687422171	687424719	2548	False	556.56	1598	92.058800	207	2460	5	chr1B.!!$F5	2253
7	TraesCS1A01G445100	chr1B	509894937	509895483	546	False	357.00	357	79.492000	1953	2470	1	chr1B.!!$F1	517
8	TraesCS1A01G445100	chr1D	494167957	494170768	2811	False	778.00	1531	91.066000	14	2470	4	chr1D.!!$F2	2456
9	TraesCS1A01G445100	chr1D	494306795	494307309	514	False	516.00	516	85.106000	937	1441	1	chr1D.!!$F1	504
10	TraesCS1A01G445100	chr1D	494423154	494424750	1596	False	508.50	789	84.861000	207	1529	2	chr1D.!!$F5	1322
11	TraesCS1A01G445100	chr1D	494327261	494331235	3974	False	375.75	826	86.132000	342	2421	4	chr1D.!!$F3	2079
12	TraesCS1A01G445100	chr1D	494348366	494350192	1826	False	366.50	503	84.789000	225	1431	2	chr1D.!!$F4	1206
13	TraesCS1A01G445100	chrUn	290638366	290638880	514	True	499.00	499	84.526000	937	1441	1	chrUn.!!$R1	504
14	TraesCS1A01G445100	chrUn	290644091	290644605	514	True	499.00	499	84.526000	937	1441	1	chrUn.!!$R2	504
15	TraesCS1A01G445100	chrUn	358967425	358968829	1404	True	487.50	756	86.413000	227	1439	2	chrUn.!!$R3	1212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
412	437	0.035176	TTGGCCAGGTACAACCGTAC	59.965	55.0	5.11	0.0	44.9	3.67	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1653	5984	0.324943	GTAGCCCCTCTGCTTGTTCA	59.675	55.0	0.0	0.0	42.75	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
45	46	7.458677	GCTGATTGCAAATTAAACAAGGAATC	58.541	34.615	1.71	0.00	42.31	2.52
92	93	5.867716	GGATTCAACTATATACACGGCGATT	59.132	40.000	16.62	1.27	0.00	3.34
106	107	3.821600	ACGGCGATTGAGACAGATATACT	59.178	43.478	16.62	0.00	0.00	2.12
109	110	5.562890	CGGCGATTGAGACAGATATACTTCA	60.563	44.000	0.00	0.00	0.00	3.02
137	138	2.809119	CGATAGTAGCTGTGATCGAGGT	59.191	50.000	16.52	2.26	42.94	3.85
138	139	3.251245	CGATAGTAGCTGTGATCGAGGTT	59.749	47.826	16.52	0.00	42.94	3.50
146	147	4.830046	AGCTGTGATCGAGGTTGATATACT	59.170	41.667	0.00	0.00	0.00	2.12
147	148	5.303078	AGCTGTGATCGAGGTTGATATACTT	59.697	40.000	0.00	0.00	0.00	2.24
148	149	5.631512	GCTGTGATCGAGGTTGATATACTTC	59.368	44.000	0.00	0.00	0.00	3.01
149	150	6.709018	TGTGATCGAGGTTGATATACTTCA	57.291	37.500	0.00	0.00	0.00	3.02
150	151	7.290110	TGTGATCGAGGTTGATATACTTCAT	57.710	36.000	0.00	0.00	0.00	2.57
158	159	9.383462	CGAGGTTGATATACTTCATATATACGC	57.617	37.037	0.00	0.00	36.72	4.42
168	169	7.925043	ACTTCATATATACGCTAGTAGCTGT	57.075	36.000	19.66	19.18	39.60	4.40
169	170	7.753659	ACTTCATATATACGCTAGTAGCTGTG	58.246	38.462	19.66	9.23	39.60	3.66
170	171	7.606839	ACTTCATATATACGCTAGTAGCTGTGA	59.393	37.037	19.66	11.26	39.60	3.58
171	172	8.507524	TTCATATATACGCTAGTAGCTGTGAT	57.492	34.615	19.66	16.35	39.60	3.06
173	174	3.815337	ATACGCTAGTAGCTGTGATCG	57.185	47.619	19.66	5.12	39.60	3.69
174	175	1.664873	ACGCTAGTAGCTGTGATCGA	58.335	50.000	19.66	0.00	39.60	3.59
175	176	1.600013	ACGCTAGTAGCTGTGATCGAG	59.400	52.381	19.66	3.72	39.60	4.04
176	177	1.069568	CGCTAGTAGCTGTGATCGAGG	60.070	57.143	19.66	0.00	39.60	4.63
177	178	1.950909	GCTAGTAGCTGTGATCGAGGT	59.049	52.381	15.16	2.26	38.45	3.85
178	179	2.359531	GCTAGTAGCTGTGATCGAGGTT	59.640	50.000	15.16	0.00	38.45	3.50
179	180	2.949451	AGTAGCTGTGATCGAGGTTG	57.051	50.000	0.00	0.00	0.00	3.77
203	204	7.862648	TGATATACTCTGCTGTAGTAAGTTCG	58.137	38.462	6.88	0.00	33.36	3.95
270	282	1.134946	GCCAGCCAGCGAAATATTTGT	59.865	47.619	5.17	0.00	0.00	2.83
271	283	2.417243	GCCAGCCAGCGAAATATTTGTT	60.417	45.455	5.17	0.00	0.00	2.83
335	352	0.179070	TGTGTGAAGCAGCACCGTTA	60.179	50.000	0.00	0.00	37.99	3.18
336	353	1.156736	GTGTGAAGCAGCACCGTTAT	58.843	50.000	0.00	0.00	37.99	1.89
337	354	1.535462	GTGTGAAGCAGCACCGTTATT	59.465	47.619	0.00	0.00	37.99	1.40
338	355	2.739913	GTGTGAAGCAGCACCGTTATTA	59.260	45.455	0.00	0.00	37.99	0.98
399	416	0.253441	ATACCCCTGTACCTTGGCCA	60.253	55.000	0.00	0.00	0.00	5.36
409	434	1.674322	CCTTGGCCAGGTACAACCG	60.674	63.158	14.60	0.00	44.90	4.44
410	435	1.072505	CTTGGCCAGGTACAACCGT	59.927	57.895	5.11	0.00	44.90	4.83
411	436	0.322322	CTTGGCCAGGTACAACCGTA	59.678	55.000	5.11	0.00	44.90	4.02
412	437	0.035176	TTGGCCAGGTACAACCGTAC	59.965	55.000	5.11	0.00	44.90	3.67
420	445	1.868469	GTACAACCGTACAAGGCACA	58.132	50.000	0.00	0.00	46.18	4.57
421	446	2.211806	GTACAACCGTACAAGGCACAA	58.788	47.619	0.00	0.00	46.18	3.33
660	1212	9.635404	TGTTCCTTCCTTAATTTGTTTCTTCTA	57.365	29.630	0.00	0.00	0.00	2.10
705	1310	6.162777	GGTGCACTATTTTTAATTTGGCTCA	58.837	36.000	17.98	0.00	0.00	4.26
736	1343	3.215151	AGATCGAGATTGTTAGAGGCGA	58.785	45.455	0.00	0.00	0.00	5.54
770	1407	3.304861	CGCACTGCCAATATATGTTGCAT	60.305	43.478	6.68	0.00	0.00	3.96
808	1523	1.464997	GAAACGTGTGCTGATCTTCCC	59.535	52.381	0.00	0.00	0.00	3.97
821	1536	5.471456	GCTGATCTTCCCGATGATTTGTAAT	59.529	40.000	0.00	0.00	30.84	1.89
910	2087	8.407457	TCTCATGTCGATTATTCTTGTAACAC	57.593	34.615	0.00	0.00	0.00	3.32
923	2102	7.931578	TTCTTGTAACACTCTCCTTGAAAAA	57.068	32.000	0.00	0.00	0.00	1.94
1202	2402	1.705873	ATGACCGGTCCTGAGGTATC	58.294	55.000	31.19	3.73	41.51	2.24
1409	5724	1.375908	GAGTGCCGGTGCTGATGAA	60.376	57.895	1.90	0.00	38.71	2.57
1431	5746	0.187117	TGTGCCCAAACCAATGAGGA	59.813	50.000	0.00	0.00	41.22	3.71
1453	5783	2.182827	TGAGGTTCAGGAGGTCATCAG	58.817	52.381	0.00	0.00	0.00	2.90
1456	5786	1.003580	GGTTCAGGAGGTCATCAGCAA	59.996	52.381	0.00	0.00	0.00	3.91
1633	5964	5.453567	AGTTTCAAGGTCATGTTAAAGGC	57.546	39.130	0.00	0.00	0.00	4.35
1638	5969	1.035385	GGTCATGTTAAAGGCCGGGG	61.035	60.000	2.18	0.00	0.00	5.73
1639	5970	0.323087	GTCATGTTAAAGGCCGGGGT	60.323	55.000	2.18	0.00	0.00	4.95
1653	5984	2.093711	GCCGGGGTTGATAAGCAAAAAT	60.094	45.455	2.18	0.00	38.44	1.82
1666	5997	3.986277	AGCAAAAATGAACAAGCAGAGG	58.014	40.909	0.00	0.00	0.00	3.69
1690	6021	5.304614	GGGCTACCAGTAATGAGATAGTTGA	59.695	44.000	0.00	0.00	36.50	3.18
1759	6099	0.675633	ATTTGTGCTTCAGGGTGTGC	59.324	50.000	0.00	0.00	0.00	4.57
1842	6184	5.800296	TCACGGATTGGATTTCTCTTGTTA	58.200	37.500	0.00	0.00	0.00	2.41
1864	6206	2.533129	GCATGGTACGTCTAACTAACGC	59.467	50.000	0.00	0.00	43.76	4.84
1929	6271	7.820648	TTCTTTCTAGAAACATGAAATGAGCC	58.179	34.615	13.99	0.00	41.31	4.70
2020	8553	3.640498	TCATGCTCCTCCAAGTCTATCTG	59.360	47.826	0.00	0.00	0.00	2.90
2462	9391	5.354513	ACAAGAATCACTCATGAGAATGCAG	59.645	40.000	29.27	16.81	38.57	4.41
2467	9396	3.822167	TCACTCATGAGAATGCAGCAAAA	59.178	39.130	29.27	0.00	0.00	2.44

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	1.136529	CGATGCGCAAATAGATCGTGG	60.137	52.381	17.11	0.00	34.39	4.94
59	60	9.120538	GTGTATATAGTTGAATCCCACAACAAT	57.879	33.333	12.15	6.22	46.58	2.71
60	61	7.279090	CGTGTATATAGTTGAATCCCACAACAA	59.721	37.037	12.15	0.00	46.58	2.83
63	64	6.285224	CCGTGTATATAGTTGAATCCCACAA	58.715	40.000	0.00	0.00	0.00	3.33
75	76	4.517832	TGTCTCAATCGCCGTGTATATAGT	59.482	41.667	0.00	0.00	0.00	2.12
84	85	3.821600	AGTATATCTGTCTCAATCGCCGT	59.178	43.478	0.00	0.00	0.00	5.68
109	110	9.198837	CTCGATCACAGCTACTATCGTATATAT	57.801	37.037	17.91	0.00	41.41	0.86
118	119	4.207955	TCAACCTCGATCACAGCTACTAT	58.792	43.478	0.00	0.00	0.00	2.12
119	120	3.617284	TCAACCTCGATCACAGCTACTA	58.383	45.455	0.00	0.00	0.00	1.82
120	121	2.447443	TCAACCTCGATCACAGCTACT	58.553	47.619	0.00	0.00	0.00	2.57
121	122	2.941453	TCAACCTCGATCACAGCTAC	57.059	50.000	0.00	0.00	0.00	3.58
158	159	3.628032	TCAACCTCGATCACAGCTACTAG	59.372	47.826	0.00	0.00	0.00	2.57
159	160	3.617284	TCAACCTCGATCACAGCTACTA	58.383	45.455	0.00	0.00	0.00	1.82
161	162	2.941453	TCAACCTCGATCACAGCTAC	57.059	50.000	0.00	0.00	0.00	3.58
162	163	6.004574	AGTATATCAACCTCGATCACAGCTA	58.995	40.000	0.00	0.00	0.00	3.32
163	164	4.830046	AGTATATCAACCTCGATCACAGCT	59.170	41.667	0.00	0.00	0.00	4.24
164	165	5.048364	AGAGTATATCAACCTCGATCACAGC	60.048	44.000	0.00	0.00	0.00	4.40
165	166	6.377780	CAGAGTATATCAACCTCGATCACAG	58.622	44.000	0.00	0.00	0.00	3.66
168	169	5.048434	CAGCAGAGTATATCAACCTCGATCA	60.048	44.000	0.00	0.00	0.00	2.92
169	170	5.048364	ACAGCAGAGTATATCAACCTCGATC	60.048	44.000	0.00	0.00	0.00	3.69
170	171	4.830046	ACAGCAGAGTATATCAACCTCGAT	59.170	41.667	0.00	0.00	0.00	3.59
171	172	4.207955	ACAGCAGAGTATATCAACCTCGA	58.792	43.478	0.00	0.00	0.00	4.04
173	174	6.642707	ACTACAGCAGAGTATATCAACCTC	57.357	41.667	0.00	0.00	0.00	3.85
174	175	7.780745	ACTTACTACAGCAGAGTATATCAACCT	59.219	37.037	0.00	0.00	29.68	3.50
175	176	7.942990	ACTTACTACAGCAGAGTATATCAACC	58.057	38.462	0.00	0.00	29.68	3.77
176	177	9.453325	GAACTTACTACAGCAGAGTATATCAAC	57.547	37.037	0.00	0.00	29.68	3.18
177	178	8.343366	CGAACTTACTACAGCAGAGTATATCAA	58.657	37.037	0.00	0.00	29.68	2.57
178	179	7.498239	ACGAACTTACTACAGCAGAGTATATCA	59.502	37.037	0.00	0.00	29.68	2.15
179	180	7.799447	CACGAACTTACTACAGCAGAGTATATC	59.201	40.741	0.00	0.00	29.68	1.63
335	352	2.803956	CCGCCGTCCATTCGTAATTAAT	59.196	45.455	0.00	0.00	0.00	1.40
336	353	2.159128	TCCGCCGTCCATTCGTAATTAA	60.159	45.455	0.00	0.00	0.00	1.40
337	354	1.408340	TCCGCCGTCCATTCGTAATTA	59.592	47.619	0.00	0.00	0.00	1.40
338	355	0.176219	TCCGCCGTCCATTCGTAATT	59.824	50.000	0.00	0.00	0.00	1.40
407	432	1.025812	TTGGTTTGTGCCTTGTACGG	58.974	50.000	0.00	0.00	0.00	4.02
409	434	2.469826	GCTTTGGTTTGTGCCTTGTAC	58.530	47.619	0.00	0.00	0.00	2.90
410	435	1.410882	GGCTTTGGTTTGTGCCTTGTA	59.589	47.619	0.00	0.00	41.92	2.41
411	436	0.177836	GGCTTTGGTTTGTGCCTTGT	59.822	50.000	0.00	0.00	41.92	3.16
412	437	0.532640	GGGCTTTGGTTTGTGCCTTG	60.533	55.000	0.00	0.00	44.36	3.61
413	438	1.695114	GGGGCTTTGGTTTGTGCCTT	61.695	55.000	0.00	0.00	44.36	4.35
415	440	1.977293	TTGGGGCTTTGGTTTGTGCC	61.977	55.000	0.00	0.00	44.22	5.01
416	441	0.532640	CTTGGGGCTTTGGTTTGTGC	60.533	55.000	0.00	0.00	0.00	4.57
420	445	2.043604	GCTGCTTGGGGCTTTGGTTT	62.044	55.000	0.00	0.00	42.39	3.27
421	446	2.510551	GCTGCTTGGGGCTTTGGTT	61.511	57.895	0.00	0.00	42.39	3.67
705	1310	6.932356	AACAATCTCGATCTTGTATGCATT	57.068	33.333	3.54	0.00	34.61	3.56
736	1343	2.046314	AGTGCGCGGTTTAGGCAT	60.046	55.556	8.83	0.00	39.14	4.40
748	1355	2.033174	TGCAACATATATTGGCAGTGCG	59.967	45.455	9.45	0.00	0.00	5.34
770	1407	4.688021	GTTTCATAGGCAACAACAACCAA	58.312	39.130	0.00	0.00	41.41	3.67
808	1523	7.344441	TGCAACTAATCGATTACAAATCATCG	58.656	34.615	13.85	4.05	43.05	3.84
923	2102	8.713708	ATCTGATACACACCTAGCTAATACTT	57.286	34.615	0.00	0.00	0.00	2.24
1258	2469	2.158914	TCGATGAGGTGACCATCCAATG	60.159	50.000	3.63	0.00	37.67	2.82
1409	5724	8.922474	CAATCCTCATTGGTTTGGGCACAAAT	62.922	42.308	18.76	0.00	38.60	2.32
1431	5746	3.184628	TGATGACCTCCTGAACCTCAAT	58.815	45.455	0.00	0.00	0.00	2.57
1453	5783	6.351327	AGCGTCACTAATTATTCTTCTTGC	57.649	37.500	0.00	0.00	0.00	4.01
1456	5786	6.109359	AGCAAGCGTCACTAATTATTCTTCT	58.891	36.000	0.00	0.00	0.00	2.85
1541	5872	9.745018	CTATCAAACATTCATGGTATATCCCTT	57.255	33.333	0.00	0.00	34.77	3.95
1633	5964	3.194542	TCATTTTTGCTTATCAACCCCGG	59.805	43.478	0.00	0.00	33.73	5.73
1638	5969	7.169645	TCTGCTTGTTCATTTTTGCTTATCAAC	59.830	33.333	0.00	0.00	33.73	3.18
1639	5970	7.208777	TCTGCTTGTTCATTTTTGCTTATCAA	58.791	30.769	0.00	0.00	0.00	2.57
1653	5984	0.324943	GTAGCCCCTCTGCTTGTTCA	59.675	55.000	0.00	0.00	42.75	3.18
1666	5997	5.304614	TCAACTATCTCATTACTGGTAGCCC	59.695	44.000	0.00	0.00	0.00	5.19
1842	6184	3.733077	GCGTTAGTTAGACGTACCATGCT	60.733	47.826	0.00	0.00	42.22	3.79
1864	6206	2.119801	ATGCTTAGCTTCACAGGTGG	57.880	50.000	5.60	0.00	31.45	4.61
2046	8599	3.462678	GAGCCGGGAGAGGGTGAC	61.463	72.222	2.18	0.00	42.85	3.67
2061	8614	7.334090	TGTGAAAAAGAGAGGATAGATTGGAG	58.666	38.462	0.00	0.00	0.00	3.86
2062	8615	7.257790	TGTGAAAAAGAGAGGATAGATTGGA	57.742	36.000	0.00	0.00	0.00	3.53
2105	8659	1.503347	GGAGGAGAAGGAGGAGGAGAT	59.497	57.143	0.00	0.00	0.00	2.75
2278	9186	0.610232	ACAATGGCTCAAGCTCCCAC	60.610	55.000	1.46	0.00	41.70	4.61
2312	9220	2.210116	GACCTCAAGAACGACAGCAAA	58.790	47.619	0.00	0.00	0.00	3.68
2316	9224	4.703645	TCTATGACCTCAAGAACGACAG	57.296	45.455	0.00	0.00	0.00	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.