Multiple sequence alignment - TraesCS1A01G444700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G444700 chr1A 100.000 3125 0 0 782 3906 592660291 592657167 0.000000e+00 5771.0
1 TraesCS1A01G444700 chr1A 100.000 362 0 0 1 362 592661072 592660711 0.000000e+00 669.0
2 TraesCS1A01G444700 chr1B 90.067 2537 147 40 782 3274 687334574 687337049 0.000000e+00 3192.0
3 TraesCS1A01G444700 chr1D 90.494 2367 113 36 793 3127 494053604 494055890 0.000000e+00 3022.0
4 TraesCS1A01G444700 chr1D 87.680 625 40 14 3161 3763 494055977 494056586 0.000000e+00 693.0
5 TraesCS1A01G444700 chr1D 78.836 189 16 8 3446 3610 38742721 38742533 5.340000e-19 106.0
6 TraesCS1A01G444700 chr5D 81.322 605 89 18 3003 3595 411100750 411101342 1.640000e-128 470.0
7 TraesCS1A01G444700 chr5D 82.095 525 85 8 3003 3525 457620145 457619628 1.290000e-119 440.0
8 TraesCS1A01G444700 chr5D 81.321 530 84 8 3003 3523 267071814 267071291 2.170000e-112 416.0
9 TraesCS1A01G444700 chr5D 76.110 473 79 21 3156 3595 101777159 101776688 2.360000e-52 217.0
10 TraesCS1A01G444700 chr5D 90.741 108 10 0 3798 3905 398519712 398519605 1.130000e-30 145.0
11 TraesCS1A01G444700 chr4D 82.567 522 77 8 3019 3533 449061772 449062286 7.700000e-122 448.0
12 TraesCS1A01G444700 chr6D 82.353 527 73 12 3007 3523 377891220 377890704 1.290000e-119 440.0
13 TraesCS1A01G444700 chr6D 81.818 495 73 12 3007 3489 31466673 31467162 2.190000e-107 399.0
14 TraesCS1A01G444700 chr6A 82.996 494 73 8 3001 3487 502361469 502361958 1.670000e-118 436.0
15 TraesCS1A01G444700 chr5B 81.553 515 83 9 3014 3525 559673636 559673131 7.810000e-112 414.0
16 TraesCS1A01G444700 chr7D 83.827 439 61 7 3099 3530 119057313 119056878 3.630000e-110 409.0
17 TraesCS1A01G444700 chr4A 77.778 639 98 27 3007 3611 153561828 153562456 1.730000e-93 353.0
18 TraesCS1A01G444700 chr7A 76.386 415 48 22 3225 3610 632090993 632090600 1.120000e-40 178.0
19 TraesCS1A01G444700 chr4B 90.441 136 12 1 3770 3904 480833040 480832905 1.120000e-40 178.0
20 TraesCS1A01G444700 chr4B 94.118 68 3 1 3524 3590 121193870 121193803 6.900000e-18 102.0
21 TraesCS1A01G444700 chr7B 86.861 137 10 3 3770 3905 732625198 732625327 3.140000e-31 147.0
22 TraesCS1A01G444700 chr2B 73.858 394 77 19 3220 3595 539629459 539629844 2.450000e-27 134.0
23 TraesCS1A01G444700 chr3A 86.154 65 9 0 3763 3827 20895019 20894955 1.950000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G444700 chr1A 592657167 592661072 3905 True 3220.0 5771 100.000 1 3906 2 chr1A.!!$R1 3905
1 TraesCS1A01G444700 chr1B 687334574 687337049 2475 False 3192.0 3192 90.067 782 3274 1 chr1B.!!$F1 2492
2 TraesCS1A01G444700 chr1D 494053604 494056586 2982 False 1857.5 3022 89.087 793 3763 2 chr1D.!!$F1 2970
3 TraesCS1A01G444700 chr5D 411100750 411101342 592 False 470.0 470 81.322 3003 3595 1 chr5D.!!$F1 592
4 TraesCS1A01G444700 chr5D 457619628 457620145 517 True 440.0 440 82.095 3003 3525 1 chr5D.!!$R4 522
5 TraesCS1A01G444700 chr5D 267071291 267071814 523 True 416.0 416 81.321 3003 3523 1 chr5D.!!$R2 520
6 TraesCS1A01G444700 chr4D 449061772 449062286 514 False 448.0 448 82.567 3019 3533 1 chr4D.!!$F1 514
7 TraesCS1A01G444700 chr6D 377890704 377891220 516 True 440.0 440 82.353 3007 3523 1 chr6D.!!$R1 516
8 TraesCS1A01G444700 chr5B 559673131 559673636 505 True 414.0 414 81.553 3014 3525 1 chr5B.!!$R1 511
9 TraesCS1A01G444700 chr4A 153561828 153562456 628 False 353.0 353 77.778 3007 3611 1 chr4A.!!$F1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.037139 TTTAACGGCCGCTGCTTCTA 60.037 50.0 28.58 2.28 37.74 2.10 F
1028 1030 0.034198 GGCCGGGAGAAGAAGATAGC 59.966 60.0 2.18 0.00 0.00 2.97 F
1029 1031 0.753262 GCCGGGAGAAGAAGATAGCA 59.247 55.0 2.18 0.00 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1033 1035 0.531532 TTTGTTTTGGTGCATGCCCG 60.532 50.0 16.68 0.0 0.00 6.13 R
2107 2138 0.109458 TCTGCACGTACACGATGTCC 60.109 55.0 9.04 0.0 43.02 4.02 R
2905 2963 0.563672 ATGACTAGGGGGAGGACCTC 59.436 60.0 13.60 13.6 41.56 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.892425 GGCCGCCGATGTCTCTTG 60.892 66.667 0.00 0.00 0.00 3.02
22 23 2.892425 GCCGCCGATGTCTCTTGG 60.892 66.667 0.00 0.00 0.00 3.61
23 24 2.579201 CCGCCGATGTCTCTTGGT 59.421 61.111 0.00 0.00 0.00 3.67
24 25 1.519455 CCGCCGATGTCTCTTGGTC 60.519 63.158 0.00 0.00 0.00 4.02
25 26 1.513158 CGCCGATGTCTCTTGGTCT 59.487 57.895 0.00 0.00 0.00 3.85
26 27 0.803768 CGCCGATGTCTCTTGGTCTG 60.804 60.000 0.00 0.00 0.00 3.51
27 28 1.086634 GCCGATGTCTCTTGGTCTGC 61.087 60.000 0.00 0.00 0.00 4.26
28 29 0.247460 CCGATGTCTCTTGGTCTGCA 59.753 55.000 0.00 0.00 0.00 4.41
29 30 1.134580 CCGATGTCTCTTGGTCTGCAT 60.135 52.381 0.00 0.00 0.00 3.96
30 31 2.200067 CGATGTCTCTTGGTCTGCATC 58.800 52.381 0.00 0.00 0.00 3.91
31 32 2.200067 GATGTCTCTTGGTCTGCATCG 58.800 52.381 0.00 0.00 0.00 3.84
32 33 1.256812 TGTCTCTTGGTCTGCATCGA 58.743 50.000 0.00 0.00 0.00 3.59
33 34 1.067565 TGTCTCTTGGTCTGCATCGAC 60.068 52.381 0.00 0.00 0.00 4.20
34 35 0.171231 TCTCTTGGTCTGCATCGACG 59.829 55.000 0.00 0.00 34.75 5.12
35 36 0.803768 CTCTTGGTCTGCATCGACGG 60.804 60.000 0.00 0.00 34.75 4.79
36 37 1.079819 CTTGGTCTGCATCGACGGT 60.080 57.895 0.00 0.00 34.75 4.83
37 38 0.670546 CTTGGTCTGCATCGACGGTT 60.671 55.000 0.00 0.00 34.75 4.44
38 39 0.250124 TTGGTCTGCATCGACGGTTT 60.250 50.000 0.00 0.00 34.75 3.27
39 40 0.250124 TGGTCTGCATCGACGGTTTT 60.250 50.000 0.00 0.00 34.75 2.43
40 41 1.001068 TGGTCTGCATCGACGGTTTTA 59.999 47.619 0.00 0.00 34.75 1.52
41 42 2.070783 GGTCTGCATCGACGGTTTTAA 58.929 47.619 0.00 0.00 34.75 1.52
42 43 2.159747 GGTCTGCATCGACGGTTTTAAC 60.160 50.000 0.00 0.00 34.75 2.01
43 44 1.722464 TCTGCATCGACGGTTTTAACG 59.278 47.619 0.00 0.00 37.36 3.18
44 45 0.791422 TGCATCGACGGTTTTAACGG 59.209 50.000 0.00 0.00 35.23 4.44
45 46 0.519792 GCATCGACGGTTTTAACGGC 60.520 55.000 0.00 0.00 35.62 5.68
46 47 0.095762 CATCGACGGTTTTAACGGCC 59.904 55.000 0.00 0.00 35.52 6.13
50 51 2.174835 CGGTTTTAACGGCCGCTG 59.825 61.111 28.58 9.08 38.99 5.18
51 52 2.126618 GGTTTTAACGGCCGCTGC 60.127 61.111 28.58 9.64 0.00 5.25
52 53 2.622962 GGTTTTAACGGCCGCTGCT 61.623 57.895 28.58 10.18 37.74 4.24
53 54 1.284715 GTTTTAACGGCCGCTGCTT 59.715 52.632 28.58 15.04 37.74 3.91
54 55 0.728129 GTTTTAACGGCCGCTGCTTC 60.728 55.000 28.58 8.70 37.74 3.86
55 56 0.887387 TTTTAACGGCCGCTGCTTCT 60.887 50.000 28.58 0.00 37.74 2.85
56 57 0.037139 TTTAACGGCCGCTGCTTCTA 60.037 50.000 28.58 2.28 37.74 2.10
57 58 0.738412 TTAACGGCCGCTGCTTCTAC 60.738 55.000 28.58 0.00 37.74 2.59
58 59 1.879737 TAACGGCCGCTGCTTCTACA 61.880 55.000 28.58 0.00 37.74 2.74
59 60 2.434185 CGGCCGCTGCTTCTACAA 60.434 61.111 14.67 0.00 37.74 2.41
60 61 2.456119 CGGCCGCTGCTTCTACAAG 61.456 63.158 14.67 0.00 37.74 3.16
61 62 1.376037 GGCCGCTGCTTCTACAAGT 60.376 57.895 0.00 0.00 37.74 3.16
62 63 0.955919 GGCCGCTGCTTCTACAAGTT 60.956 55.000 0.00 0.00 37.74 2.66
63 64 0.444260 GCCGCTGCTTCTACAAGTTC 59.556 55.000 0.00 0.00 31.45 3.01
64 65 1.079503 CCGCTGCTTCTACAAGTTCC 58.920 55.000 0.00 0.00 31.45 3.62
65 66 1.338200 CCGCTGCTTCTACAAGTTCCT 60.338 52.381 0.00 0.00 31.45 3.36
66 67 1.728971 CGCTGCTTCTACAAGTTCCTG 59.271 52.381 0.00 0.00 31.45 3.86
67 68 2.079925 GCTGCTTCTACAAGTTCCTGG 58.920 52.381 0.00 0.00 31.45 4.45
68 69 2.704572 CTGCTTCTACAAGTTCCTGGG 58.295 52.381 0.00 0.00 31.45 4.45
69 70 2.039084 CTGCTTCTACAAGTTCCTGGGT 59.961 50.000 0.00 0.00 31.45 4.51
70 71 2.441750 TGCTTCTACAAGTTCCTGGGTT 59.558 45.455 0.00 0.00 31.45 4.11
71 72 3.117663 TGCTTCTACAAGTTCCTGGGTTT 60.118 43.478 0.00 0.00 31.45 3.27
72 73 4.103469 TGCTTCTACAAGTTCCTGGGTTTA 59.897 41.667 0.00 0.00 31.45 2.01
73 74 5.222048 TGCTTCTACAAGTTCCTGGGTTTAT 60.222 40.000 0.00 0.00 31.45 1.40
74 75 6.013206 TGCTTCTACAAGTTCCTGGGTTTATA 60.013 38.462 0.00 0.00 31.45 0.98
75 76 6.882678 GCTTCTACAAGTTCCTGGGTTTATAA 59.117 38.462 0.00 0.00 31.45 0.98
76 77 7.392393 GCTTCTACAAGTTCCTGGGTTTATAAA 59.608 37.037 0.00 0.00 31.45 1.40
77 78 9.292195 CTTCTACAAGTTCCTGGGTTTATAAAA 57.708 33.333 0.00 0.00 0.00 1.52
78 79 8.857694 TCTACAAGTTCCTGGGTTTATAAAAG 57.142 34.615 0.00 0.00 0.00 2.27
79 80 8.442374 TCTACAAGTTCCTGGGTTTATAAAAGT 58.558 33.333 0.00 0.00 0.00 2.66
80 81 7.907841 ACAAGTTCCTGGGTTTATAAAAGTT 57.092 32.000 0.00 0.00 0.00 2.66
81 82 8.999905 ACAAGTTCCTGGGTTTATAAAAGTTA 57.000 30.769 0.00 0.00 0.00 2.24
82 83 9.074576 ACAAGTTCCTGGGTTTATAAAAGTTAG 57.925 33.333 0.00 0.00 0.00 2.34
83 84 7.698506 AGTTCCTGGGTTTATAAAAGTTAGC 57.301 36.000 0.00 0.00 0.00 3.09
84 85 7.467650 AGTTCCTGGGTTTATAAAAGTTAGCT 58.532 34.615 0.00 0.00 0.00 3.32
85 86 7.610692 AGTTCCTGGGTTTATAAAAGTTAGCTC 59.389 37.037 0.00 0.00 0.00 4.09
86 87 6.420638 TCCTGGGTTTATAAAAGTTAGCTCC 58.579 40.000 0.00 0.00 0.00 4.70
87 88 5.296035 CCTGGGTTTATAAAAGTTAGCTCCG 59.704 44.000 0.00 0.00 0.00 4.63
88 89 4.637091 TGGGTTTATAAAAGTTAGCTCCGC 59.363 41.667 0.00 0.00 0.00 5.54
89 90 4.260497 GGGTTTATAAAAGTTAGCTCCGCG 60.260 45.833 0.00 0.00 0.00 6.46
90 91 4.269312 GTTTATAAAAGTTAGCTCCGCGC 58.731 43.478 0.00 0.00 39.57 6.86
91 92 2.018542 ATAAAAGTTAGCTCCGCGCA 57.981 45.000 8.75 0.00 42.61 6.09
92 93 1.798283 TAAAAGTTAGCTCCGCGCAA 58.202 45.000 8.75 0.00 42.61 4.85
93 94 0.517316 AAAAGTTAGCTCCGCGCAAG 59.483 50.000 8.75 5.15 42.61 4.01
94 95 0.602905 AAAGTTAGCTCCGCGCAAGT 60.603 50.000 8.75 0.00 42.61 3.16
103 104 2.049156 CGCGCAAGTGGAGACTGA 60.049 61.111 8.75 0.00 46.11 3.41
104 105 2.091112 CGCGCAAGTGGAGACTGAG 61.091 63.158 8.75 0.00 46.11 3.35
105 106 1.290324 GCGCAAGTGGAGACTGAGA 59.710 57.895 0.30 0.00 41.68 3.27
106 107 0.735632 GCGCAAGTGGAGACTGAGAG 60.736 60.000 0.30 0.00 41.68 3.20
107 108 0.108898 CGCAAGTGGAGACTGAGAGG 60.109 60.000 0.00 0.00 30.61 3.69
108 109 0.972883 GCAAGTGGAGACTGAGAGGT 59.027 55.000 0.00 0.00 30.61 3.85
109 110 1.337635 GCAAGTGGAGACTGAGAGGTG 60.338 57.143 0.00 0.00 30.61 4.00
110 111 2.242926 CAAGTGGAGACTGAGAGGTGA 58.757 52.381 0.00 0.00 30.61 4.02
111 112 1.917872 AGTGGAGACTGAGAGGTGAC 58.082 55.000 0.00 0.00 0.00 3.67
112 113 1.145945 AGTGGAGACTGAGAGGTGACA 59.854 52.381 0.00 0.00 0.00 3.58
113 114 2.175202 GTGGAGACTGAGAGGTGACAT 58.825 52.381 0.00 0.00 0.00 3.06
114 115 2.165437 GTGGAGACTGAGAGGTGACATC 59.835 54.545 0.00 0.00 0.00 3.06
115 116 2.225117 TGGAGACTGAGAGGTGACATCA 60.225 50.000 0.00 0.00 0.00 3.07
116 117 2.828520 GGAGACTGAGAGGTGACATCAA 59.171 50.000 0.00 0.00 0.00 2.57
117 118 3.119173 GGAGACTGAGAGGTGACATCAAG 60.119 52.174 0.00 0.00 0.00 3.02
118 119 2.233431 AGACTGAGAGGTGACATCAAGC 59.767 50.000 0.00 0.00 0.00 4.01
119 120 2.233431 GACTGAGAGGTGACATCAAGCT 59.767 50.000 0.00 0.00 0.00 3.74
120 121 3.435275 ACTGAGAGGTGACATCAAGCTA 58.565 45.455 0.00 0.00 0.00 3.32
121 122 4.029520 ACTGAGAGGTGACATCAAGCTAT 58.970 43.478 0.00 0.00 0.00 2.97
122 123 4.141981 ACTGAGAGGTGACATCAAGCTATG 60.142 45.833 0.00 0.00 0.00 2.23
123 124 3.129871 GAGAGGTGACATCAAGCTATGC 58.870 50.000 0.00 0.00 0.00 3.14
124 125 2.770802 AGAGGTGACATCAAGCTATGCT 59.229 45.455 0.00 0.00 42.56 3.79
125 126 3.129871 GAGGTGACATCAAGCTATGCTC 58.870 50.000 0.00 0.00 38.25 4.26
126 127 2.502947 AGGTGACATCAAGCTATGCTCA 59.497 45.455 0.00 0.00 38.25 4.26
127 128 2.611292 GGTGACATCAAGCTATGCTCAC 59.389 50.000 16.10 16.10 38.25 3.51
128 129 2.283617 GTGACATCAAGCTATGCTCACG 59.716 50.000 12.38 0.00 38.25 4.35
129 130 1.863454 GACATCAAGCTATGCTCACGG 59.137 52.381 0.00 0.00 38.25 4.94
130 131 0.585357 CATCAAGCTATGCTCACGGC 59.415 55.000 0.00 0.00 38.25 5.68
131 132 0.877649 ATCAAGCTATGCTCACGGCG 60.878 55.000 4.80 4.80 45.43 6.46
132 133 2.892425 AAGCTATGCTCACGGCGC 60.892 61.111 6.90 0.00 45.43 6.53
133 134 3.376935 AAGCTATGCTCACGGCGCT 62.377 57.895 6.90 0.00 45.43 5.92
134 135 3.333969 GCTATGCTCACGGCGCTC 61.334 66.667 6.90 0.00 45.43 5.03
135 136 2.659897 CTATGCTCACGGCGCTCC 60.660 66.667 6.90 0.00 45.43 4.70
136 137 3.430565 CTATGCTCACGGCGCTCCA 62.431 63.158 6.90 0.00 45.43 3.86
137 138 3.716539 TATGCTCACGGCGCTCCAC 62.717 63.158 6.90 0.00 45.43 4.02
158 159 4.985044 CGAATATATCGTTCGGCCTTTT 57.015 40.909 0.00 0.00 46.52 2.27
159 160 4.942765 CGAATATATCGTTCGGCCTTTTC 58.057 43.478 0.00 0.00 46.52 2.29
160 161 4.432503 CGAATATATCGTTCGGCCTTTTCG 60.433 45.833 0.00 0.29 46.52 3.46
161 162 1.578583 ATATCGTTCGGCCTTTTCGG 58.421 50.000 0.00 0.00 0.00 4.30
162 163 0.531657 TATCGTTCGGCCTTTTCGGA 59.468 50.000 0.00 0.00 33.16 4.55
163 164 0.320946 ATCGTTCGGCCTTTTCGGAA 60.321 50.000 0.00 0.00 33.16 4.30
164 165 0.320946 TCGTTCGGCCTTTTCGGAAT 60.321 50.000 0.00 0.00 33.16 3.01
165 166 1.067000 TCGTTCGGCCTTTTCGGAATA 60.067 47.619 0.00 0.00 33.16 1.75
166 167 1.937899 CGTTCGGCCTTTTCGGAATAT 59.062 47.619 0.00 0.00 33.16 1.28
167 168 3.125316 CGTTCGGCCTTTTCGGAATATA 58.875 45.455 0.00 0.00 33.16 0.86
168 169 3.744426 CGTTCGGCCTTTTCGGAATATAT 59.256 43.478 0.00 0.00 33.16 0.86
169 170 4.925054 CGTTCGGCCTTTTCGGAATATATA 59.075 41.667 0.00 0.00 33.16 0.86
170 171 5.579511 CGTTCGGCCTTTTCGGAATATATAT 59.420 40.000 0.00 0.00 33.16 0.86
171 172 6.753279 CGTTCGGCCTTTTCGGAATATATATA 59.247 38.462 0.00 0.00 33.16 0.86
172 173 7.276218 CGTTCGGCCTTTTCGGAATATATATAA 59.724 37.037 0.00 0.00 33.16 0.98
173 174 9.106070 GTTCGGCCTTTTCGGAATATATATAAT 57.894 33.333 0.00 0.00 33.16 1.28
225 226 8.800370 TTTTTCTTTTTGCTTGGGTAAATCTT 57.200 26.923 0.00 0.00 0.00 2.40
226 227 7.784633 TTTCTTTTTGCTTGGGTAAATCTTG 57.215 32.000 0.00 0.00 0.00 3.02
227 228 6.723298 TCTTTTTGCTTGGGTAAATCTTGA 57.277 33.333 0.00 0.00 0.00 3.02
228 229 6.512297 TCTTTTTGCTTGGGTAAATCTTGAC 58.488 36.000 0.00 0.00 0.00 3.18
229 230 4.497473 TTTGCTTGGGTAAATCTTGACG 57.503 40.909 0.00 0.00 0.00 4.35
230 231 3.134574 TGCTTGGGTAAATCTTGACGT 57.865 42.857 0.00 0.00 0.00 4.34
231 232 3.071479 TGCTTGGGTAAATCTTGACGTC 58.929 45.455 9.11 9.11 0.00 4.34
232 233 3.071479 GCTTGGGTAAATCTTGACGTCA 58.929 45.455 15.76 15.76 0.00 4.35
233 234 3.125316 GCTTGGGTAAATCTTGACGTCAG 59.875 47.826 19.11 12.86 0.00 3.51
234 235 4.566004 CTTGGGTAAATCTTGACGTCAGA 58.434 43.478 19.11 17.54 0.00 3.27
235 236 4.819105 TGGGTAAATCTTGACGTCAGAT 57.181 40.909 19.11 18.89 0.00 2.90
236 237 5.160607 TGGGTAAATCTTGACGTCAGATT 57.839 39.130 24.92 24.92 34.17 2.40
237 238 5.556915 TGGGTAAATCTTGACGTCAGATTT 58.443 37.500 33.29 33.29 42.61 2.17
238 239 5.642063 TGGGTAAATCTTGACGTCAGATTTC 59.358 40.000 34.03 27.88 41.03 2.17
239 240 5.875359 GGGTAAATCTTGACGTCAGATTTCT 59.125 40.000 34.03 24.31 41.03 2.52
240 241 7.039882 GGGTAAATCTTGACGTCAGATTTCTA 58.960 38.462 34.03 24.64 41.03 2.10
241 242 7.548075 GGGTAAATCTTGACGTCAGATTTCTAA 59.452 37.037 34.03 24.21 41.03 2.10
242 243 9.099454 GGTAAATCTTGACGTCAGATTTCTAAT 57.901 33.333 34.03 23.44 41.03 1.73
244 245 8.777865 AAATCTTGACGTCAGATTTCTAATCA 57.222 30.769 29.81 11.90 37.63 2.57
245 246 8.954950 AATCTTGACGTCAGATTTCTAATCAT 57.045 30.769 24.92 10.21 0.00 2.45
246 247 7.761651 TCTTGACGTCAGATTTCTAATCATG 57.238 36.000 19.11 0.00 0.00 3.07
247 248 6.758416 TCTTGACGTCAGATTTCTAATCATGG 59.242 38.462 19.11 0.00 0.00 3.66
248 249 5.977635 TGACGTCAGATTTCTAATCATGGT 58.022 37.500 15.76 0.00 0.00 3.55
249 250 7.107639 TGACGTCAGATTTCTAATCATGGTA 57.892 36.000 15.76 0.00 0.00 3.25
250 251 7.203218 TGACGTCAGATTTCTAATCATGGTAG 58.797 38.462 15.76 0.00 0.00 3.18
251 252 7.068226 TGACGTCAGATTTCTAATCATGGTAGA 59.932 37.037 15.76 0.00 0.00 2.59
252 253 7.957002 ACGTCAGATTTCTAATCATGGTAGAT 58.043 34.615 7.58 0.00 0.00 1.98
253 254 8.424918 ACGTCAGATTTCTAATCATGGTAGATT 58.575 33.333 7.58 0.00 40.99 2.40
254 255 8.706936 CGTCAGATTTCTAATCATGGTAGATTG 58.293 37.037 7.58 5.65 38.60 2.67
255 256 9.770097 GTCAGATTTCTAATCATGGTAGATTGA 57.230 33.333 7.58 7.21 38.60 2.57
258 259 9.265901 AGATTTCTAATCATGGTAGATTGAACG 57.734 33.333 7.58 0.00 38.60 3.95
259 260 8.964476 ATTTCTAATCATGGTAGATTGAACGT 57.036 30.769 7.58 0.00 38.60 3.99
260 261 8.786826 TTTCTAATCATGGTAGATTGAACGTT 57.213 30.769 0.00 0.00 38.60 3.99
261 262 8.786826 TTCTAATCATGGTAGATTGAACGTTT 57.213 30.769 0.46 0.00 38.60 3.60
262 263 8.786826 TCTAATCATGGTAGATTGAACGTTTT 57.213 30.769 0.46 0.00 38.60 2.43
263 264 9.226606 TCTAATCATGGTAGATTGAACGTTTTT 57.773 29.630 0.46 0.00 38.60 1.94
285 286 8.814733 TTTTTATGACAAATTATACTGTCGCG 57.185 30.769 0.00 0.00 44.04 5.87
286 287 6.519353 TTATGACAAATTATACTGTCGCGG 57.481 37.500 6.13 0.00 44.04 6.46
287 288 3.191669 TGACAAATTATACTGTCGCGGG 58.808 45.455 6.13 0.00 44.04 6.13
288 289 2.542595 GACAAATTATACTGTCGCGGGG 59.457 50.000 6.13 0.00 33.19 5.73
289 290 2.168936 ACAAATTATACTGTCGCGGGGA 59.831 45.455 6.13 0.00 0.00 4.81
290 291 3.181458 ACAAATTATACTGTCGCGGGGAT 60.181 43.478 6.13 1.69 0.00 3.85
291 292 2.743636 ATTATACTGTCGCGGGGATG 57.256 50.000 6.13 0.00 0.00 3.51
292 293 0.677288 TTATACTGTCGCGGGGATGG 59.323 55.000 6.13 0.00 0.00 3.51
293 294 1.812686 TATACTGTCGCGGGGATGGC 61.813 60.000 6.13 0.00 0.00 4.40
295 296 4.776322 CTGTCGCGGGGATGGCAA 62.776 66.667 6.13 0.00 0.00 4.52
296 297 4.108299 TGTCGCGGGGATGGCAAT 62.108 61.111 6.13 0.00 0.00 3.56
297 298 2.828549 GTCGCGGGGATGGCAATT 60.829 61.111 6.13 0.00 0.00 2.32
298 299 2.044451 TCGCGGGGATGGCAATTT 60.044 55.556 6.13 0.00 0.00 1.82
299 300 1.680651 TCGCGGGGATGGCAATTTT 60.681 52.632 6.13 0.00 0.00 1.82
300 301 0.394488 TCGCGGGGATGGCAATTTTA 60.394 50.000 6.13 0.00 0.00 1.52
301 302 0.673437 CGCGGGGATGGCAATTTTAT 59.327 50.000 0.00 0.00 0.00 1.40
302 303 1.335872 CGCGGGGATGGCAATTTTATC 60.336 52.381 0.00 0.00 0.00 1.75
303 304 1.686052 GCGGGGATGGCAATTTTATCA 59.314 47.619 0.00 0.00 0.00 2.15
304 305 2.545742 GCGGGGATGGCAATTTTATCAC 60.546 50.000 0.00 0.00 0.00 3.06
305 306 2.692557 CGGGGATGGCAATTTTATCACA 59.307 45.455 0.00 0.00 0.00 3.58
306 307 3.321682 CGGGGATGGCAATTTTATCACAT 59.678 43.478 0.00 0.00 0.00 3.21
307 308 4.522405 CGGGGATGGCAATTTTATCACATA 59.478 41.667 0.00 0.00 0.00 2.29
308 309 5.010516 CGGGGATGGCAATTTTATCACATAA 59.989 40.000 0.00 0.00 0.00 1.90
309 310 6.295236 CGGGGATGGCAATTTTATCACATAAT 60.295 38.462 0.00 0.00 0.00 1.28
310 311 7.452562 GGGGATGGCAATTTTATCACATAATT 58.547 34.615 0.00 0.00 0.00 1.40
311 312 7.938490 GGGGATGGCAATTTTATCACATAATTT 59.062 33.333 0.00 0.00 0.00 1.82
312 313 8.776470 GGGATGGCAATTTTATCACATAATTTG 58.224 33.333 0.00 0.00 0.00 2.32
313 314 9.328845 GGATGGCAATTTTATCACATAATTTGT 57.671 29.630 0.00 0.00 39.91 2.83
315 316 9.887629 ATGGCAATTTTATCACATAATTTGTCA 57.112 25.926 0.00 0.00 37.30 3.58
316 317 9.887629 TGGCAATTTTATCACATAATTTGTCAT 57.112 25.926 0.00 0.00 36.00 3.06
324 325 6.407475 TCACATAATTTGTCATCTCACACG 57.593 37.500 0.00 0.00 36.00 4.49
325 326 5.931724 TCACATAATTTGTCATCTCACACGT 59.068 36.000 0.00 0.00 36.00 4.49
326 327 7.093992 TCACATAATTTGTCATCTCACACGTA 58.906 34.615 0.00 0.00 36.00 3.57
327 328 7.763985 TCACATAATTTGTCATCTCACACGTAT 59.236 33.333 0.00 0.00 36.00 3.06
328 329 8.390354 CACATAATTTGTCATCTCACACGTATT 58.610 33.333 0.00 0.00 36.00 1.89
329 330 8.390354 ACATAATTTGTCATCTCACACGTATTG 58.610 33.333 0.00 0.00 30.89 1.90
330 331 5.801350 ATTTGTCATCTCACACGTATTGG 57.199 39.130 0.00 0.00 0.00 3.16
331 332 4.529109 TTGTCATCTCACACGTATTGGA 57.471 40.909 0.00 0.00 0.00 3.53
332 333 4.736126 TGTCATCTCACACGTATTGGAT 57.264 40.909 0.00 0.00 0.00 3.41
333 334 5.084818 TGTCATCTCACACGTATTGGATT 57.915 39.130 0.00 0.00 0.00 3.01
334 335 5.487433 TGTCATCTCACACGTATTGGATTT 58.513 37.500 0.00 0.00 0.00 2.17
335 336 5.351189 TGTCATCTCACACGTATTGGATTTG 59.649 40.000 0.00 0.00 0.00 2.32
336 337 4.332543 TCATCTCACACGTATTGGATTTGC 59.667 41.667 0.00 0.00 0.00 3.68
337 338 3.006940 TCTCACACGTATTGGATTTGCC 58.993 45.455 0.00 0.00 37.10 4.52
350 351 5.680594 TGGATTTGCCATGCTAAAAATCT 57.319 34.783 14.71 0.00 43.33 2.40
351 352 5.421277 TGGATTTGCCATGCTAAAAATCTG 58.579 37.500 14.71 0.00 43.33 2.90
352 353 5.046448 TGGATTTGCCATGCTAAAAATCTGT 60.046 36.000 14.71 0.00 43.33 3.41
353 354 5.292589 GGATTTGCCATGCTAAAAATCTGTG 59.707 40.000 14.71 0.00 38.50 3.66
354 355 3.872511 TGCCATGCTAAAAATCTGTGG 57.127 42.857 0.00 0.00 0.00 4.17
355 356 3.164268 TGCCATGCTAAAAATCTGTGGT 58.836 40.909 0.00 0.00 0.00 4.16
356 357 3.577848 TGCCATGCTAAAAATCTGTGGTT 59.422 39.130 0.00 0.00 0.00 3.67
357 358 4.176271 GCCATGCTAAAAATCTGTGGTTC 58.824 43.478 0.00 0.00 0.00 3.62
358 359 4.321899 GCCATGCTAAAAATCTGTGGTTCA 60.322 41.667 0.00 0.00 0.00 3.18
359 360 5.782047 CCATGCTAAAAATCTGTGGTTCAA 58.218 37.500 0.00 0.00 0.00 2.69
360 361 6.400568 CCATGCTAAAAATCTGTGGTTCAAT 58.599 36.000 0.00 0.00 0.00 2.57
361 362 6.875195 CCATGCTAAAAATCTGTGGTTCAATT 59.125 34.615 0.00 0.00 0.00 2.32
836 838 0.329261 TGAGAAATGGGGAGGTGCTG 59.671 55.000 0.00 0.00 0.00 4.41
837 839 0.620556 GAGAAATGGGGAGGTGCTGA 59.379 55.000 0.00 0.00 0.00 4.26
838 840 0.622665 AGAAATGGGGAGGTGCTGAG 59.377 55.000 0.00 0.00 0.00 3.35
839 841 1.000396 AAATGGGGAGGTGCTGAGC 60.000 57.895 0.00 0.00 0.00 4.26
840 842 1.792757 AAATGGGGAGGTGCTGAGCA 61.793 55.000 1.40 1.40 35.60 4.26
841 843 1.578215 AATGGGGAGGTGCTGAGCAT 61.578 55.000 11.58 0.00 41.91 3.79
842 844 2.124403 GGGGAGGTGCTGAGCATG 60.124 66.667 11.58 0.00 41.91 4.06
843 845 2.827642 GGGAGGTGCTGAGCATGC 60.828 66.667 11.58 10.51 41.91 4.06
844 846 2.271497 GGAGGTGCTGAGCATGCT 59.729 61.111 22.92 22.92 41.91 3.79
857 859 2.939103 GAGCATGCTTATTATAGGCGGG 59.061 50.000 23.61 0.00 32.83 6.13
865 867 1.258445 ATTATAGGCGGGCGGAGAGG 61.258 60.000 0.00 0.00 0.00 3.69
917 919 0.938008 GCCGCTCGAATTAAGAAGGG 59.062 55.000 0.00 0.00 0.00 3.95
918 920 1.472728 GCCGCTCGAATTAAGAAGGGA 60.473 52.381 0.00 0.00 0.00 4.20
919 921 2.474816 CCGCTCGAATTAAGAAGGGAG 58.525 52.381 0.00 0.00 0.00 4.30
920 922 1.861575 CGCTCGAATTAAGAAGGGAGC 59.138 52.381 0.97 0.97 42.49 4.70
932 934 4.486503 GGGAGCAGGCAGGCAGAG 62.487 72.222 0.00 0.00 35.83 3.35
948 950 3.130693 GGCAGAGAGACGTAGGTAACAAT 59.869 47.826 0.00 0.00 41.41 2.71
949 951 4.106197 GCAGAGAGACGTAGGTAACAATG 58.894 47.826 0.00 0.00 41.41 2.82
950 952 4.673441 CAGAGAGACGTAGGTAACAATGG 58.327 47.826 0.00 0.00 41.41 3.16
951 953 3.130693 AGAGAGACGTAGGTAACAATGGC 59.869 47.826 0.00 0.00 41.41 4.40
952 954 2.159282 AGAGACGTAGGTAACAATGGCG 60.159 50.000 0.00 0.00 41.41 5.69
953 955 1.547372 AGACGTAGGTAACAATGGCGT 59.453 47.619 0.00 0.00 41.41 5.68
954 956 1.657094 GACGTAGGTAACAATGGCGTG 59.343 52.381 0.00 0.00 41.41 5.34
955 957 1.003851 CGTAGGTAACAATGGCGTGG 58.996 55.000 0.00 0.00 41.41 4.94
956 958 1.375551 GTAGGTAACAATGGCGTGGG 58.624 55.000 0.00 0.00 41.41 4.61
957 959 0.393267 TAGGTAACAATGGCGTGGGC 60.393 55.000 0.00 0.00 41.41 5.36
958 960 2.483288 GTAACAATGGCGTGGGCG 59.517 61.111 0.00 0.00 41.24 6.13
984 986 3.556513 GACCTCACATCTCTAATACGCG 58.443 50.000 3.53 3.53 0.00 6.01
1000 1002 2.029844 GCGTGGACAGGACAAGCTC 61.030 63.158 0.00 0.00 39.66 4.09
1022 1024 1.688187 GTAGGGGCCGGGAGAAGAA 60.688 63.158 2.18 0.00 0.00 2.52
1024 1026 1.882189 TAGGGGCCGGGAGAAGAAGA 61.882 60.000 2.18 0.00 0.00 2.87
1025 1027 2.073101 GGGGCCGGGAGAAGAAGAT 61.073 63.158 2.18 0.00 0.00 2.40
1026 1028 0.763223 GGGGCCGGGAGAAGAAGATA 60.763 60.000 2.18 0.00 0.00 1.98
1027 1029 0.682292 GGGCCGGGAGAAGAAGATAG 59.318 60.000 2.18 0.00 0.00 2.08
1028 1030 0.034198 GGCCGGGAGAAGAAGATAGC 59.966 60.000 2.18 0.00 0.00 2.97
1029 1031 0.753262 GCCGGGAGAAGAAGATAGCA 59.247 55.000 2.18 0.00 0.00 3.49
1030 1032 1.139058 GCCGGGAGAAGAAGATAGCAA 59.861 52.381 2.18 0.00 0.00 3.91
1031 1033 2.804933 GCCGGGAGAAGAAGATAGCAAG 60.805 54.545 2.18 0.00 0.00 4.01
1032 1034 2.224161 CCGGGAGAAGAAGATAGCAAGG 60.224 54.545 0.00 0.00 0.00 3.61
1033 1035 2.804933 CGGGAGAAGAAGATAGCAAGGC 60.805 54.545 0.00 0.00 0.00 4.35
1034 1036 2.478831 GGAGAAGAAGATAGCAAGGCG 58.521 52.381 0.00 0.00 0.00 5.52
1035 1037 2.478831 GAGAAGAAGATAGCAAGGCGG 58.521 52.381 0.00 0.00 0.00 6.13
1036 1038 1.139853 AGAAGAAGATAGCAAGGCGGG 59.860 52.381 0.00 0.00 0.00 6.13
1040 1042 0.820891 AAGATAGCAAGGCGGGCATG 60.821 55.000 3.78 2.88 0.00 4.06
1041 1043 2.908940 ATAGCAAGGCGGGCATGC 60.909 61.111 22.04 22.04 40.34 4.06
1184 1209 1.987855 GACCCGGATGAGGTGGTCA 60.988 63.158 0.73 0.00 45.29 4.02
1194 1219 2.879462 GGTGGTCATCGTCGACGC 60.879 66.667 32.19 18.11 39.60 5.19
1232 1257 2.512515 GCAGCTGCTACTTCCCGG 60.513 66.667 31.33 0.00 38.21 5.73
1447 1478 4.154347 CAGAGCGCCCTGGACTCC 62.154 72.222 11.66 0.00 0.00 3.85
1585 1616 4.394712 CGGCACAGGGACAGGGAC 62.395 72.222 0.00 0.00 0.00 4.46
1586 1617 3.249189 GGCACAGGGACAGGGACA 61.249 66.667 0.00 0.00 0.00 4.02
1587 1618 2.348998 GCACAGGGACAGGGACAG 59.651 66.667 0.00 0.00 0.00 3.51
1588 1619 3.072476 CACAGGGACAGGGACAGG 58.928 66.667 0.00 0.00 0.00 4.00
1589 1620 1.536418 CACAGGGACAGGGACAGGA 60.536 63.158 0.00 0.00 0.00 3.86
1590 1621 1.536662 ACAGGGACAGGGACAGGAC 60.537 63.158 0.00 0.00 0.00 3.85
1669 1700 4.691359 ACCTGGTACCGTCCGGCT 62.691 66.667 7.57 0.00 39.32 5.52
1783 1814 2.032528 TGCAGCTACCACCAGCAC 59.967 61.111 0.00 0.00 44.35 4.40
1901 1932 2.659610 GCTGCTCCACCTTCGAGT 59.340 61.111 0.00 0.00 0.00 4.18
1954 1985 2.515057 ACGCTGGGCAACGACAAA 60.515 55.556 0.00 0.00 37.60 2.83
1964 1995 1.332904 GCAACGACAAAGTGTCCTTCG 60.333 52.381 2.91 0.00 44.20 3.79
1968 1999 0.868406 GACAAAGTGTCCTTCGGCAG 59.132 55.000 0.00 0.00 41.37 4.85
2323 2354 1.208293 CTCCTAGACCCAAAGCTGGAC 59.792 57.143 0.00 0.00 46.92 4.02
2508 2539 0.659957 GCCTGCATCGGCTTCTTTAG 59.340 55.000 9.66 0.00 46.63 1.85
2517 2548 2.764439 GGCTTCTTTAGACGGGAAGT 57.236 50.000 0.00 0.00 38.77 3.01
2533 2564 2.362889 GTGGGGCCCAACATCCTG 60.363 66.667 30.70 0.00 34.18 3.86
2626 2657 1.616159 AGTGCACCACCCACATTAAC 58.384 50.000 14.63 0.00 34.49 2.01
2630 2661 2.560542 TGCACCACCCACATTAACATTC 59.439 45.455 0.00 0.00 0.00 2.67
2644 2675 3.584733 AACATTCCTCCTCCTAATGCC 57.415 47.619 0.00 0.00 34.63 4.40
2699 2739 2.560981 CCCAATCCCACCAACAACTAAC 59.439 50.000 0.00 0.00 0.00 2.34
2702 2742 3.825908 ATCCCACCAACAACTAACCAT 57.174 42.857 0.00 0.00 0.00 3.55
2703 2743 3.149005 TCCCACCAACAACTAACCATC 57.851 47.619 0.00 0.00 0.00 3.51
2704 2744 2.714250 TCCCACCAACAACTAACCATCT 59.286 45.455 0.00 0.00 0.00 2.90
2723 2769 8.484214 ACCATCTTCTCTGTATGTATGTATGT 57.516 34.615 0.00 0.00 0.00 2.29
2724 2770 9.588096 ACCATCTTCTCTGTATGTATGTATGTA 57.412 33.333 0.00 0.00 0.00 2.29
2791 2849 8.466798 TCATCTGTATGTATGTATGTAATCCGG 58.533 37.037 0.00 0.00 34.50 5.14
2842 2900 1.152525 TCCCTCGGCATCCCTAGTC 60.153 63.158 0.00 0.00 0.00 2.59
2915 2973 4.081254 ACTTAATTTGTACGAGGTCCTCCC 60.081 45.833 13.54 2.36 0.00 4.30
2922 2980 1.152715 CGAGGTCCTCCCCCTAGTC 60.153 68.421 13.54 0.00 30.60 2.59
2932 2993 3.019564 CTCCCCCTAGTCATGCAAAAAG 58.980 50.000 0.00 0.00 0.00 2.27
2938 2999 5.696270 CCCCTAGTCATGCAAAAAGAAAAAC 59.304 40.000 0.00 0.00 0.00 2.43
3001 3062 2.997899 GCGTCTAGCCTACCTACGA 58.002 57.895 2.42 0.00 40.81 3.43
3005 3066 1.946081 GTCTAGCCTACCTACGACCAC 59.054 57.143 0.00 0.00 0.00 4.16
3038 3099 6.070424 TGACTAGGTCAAAAAGATACCGGAAT 60.070 38.462 9.46 0.00 39.78 3.01
3064 3127 6.439599 TGTCAACGAGAAAGAACAACAAAAA 58.560 32.000 0.00 0.00 0.00 1.94
3161 3224 7.309194 GGGTCTTGTAAAGTATCACAAAGCAAT 60.309 37.037 0.00 0.00 46.34 3.56
3204 3320 5.586243 CCACAGGTTCACTCGAATATCATTT 59.414 40.000 0.00 0.00 32.61 2.32
3239 3356 6.325028 AGGGATCAATATGGATATCTACGGTG 59.675 42.308 2.05 0.00 0.00 4.94
3264 3381 4.667948 CGCTATTGATCATTGAACGAAAGC 59.332 41.667 0.00 0.00 0.00 3.51
3318 3441 3.560636 ACAGGGTCATAAAGGGATTCG 57.439 47.619 0.00 0.00 0.00 3.34
3354 3477 9.871238 GACTGTTATTGGAGTAAGAGTTATGAA 57.129 33.333 0.00 0.00 38.03 2.57
3420 3544 1.571215 GAAACCGAATGCGTTCCGGT 61.571 55.000 21.75 21.75 40.48 5.28
3438 3562 1.203052 GGTGATACCGGACGAGTTTCA 59.797 52.381 9.46 0.00 0.00 2.69
3709 3874 1.698506 ACGAATCCAACAAGCCCAAA 58.301 45.000 0.00 0.00 0.00 3.28
3713 3878 4.064388 CGAATCCAACAAGCCCAAAAATT 58.936 39.130 0.00 0.00 0.00 1.82
3718 3883 5.256474 TCCAACAAGCCCAAAAATTTCAAA 58.744 33.333 0.00 0.00 0.00 2.69
3736 3901 8.782533 ATTTCAAATTCTGAGTTTGTACGAAC 57.217 30.769 20.47 16.95 37.70 3.95
3739 3904 7.406553 TCAAATTCTGAGTTTGTACGAACAAG 58.593 34.615 24.62 20.39 45.99 3.16
3740 3905 7.279090 TCAAATTCTGAGTTTGTACGAACAAGA 59.721 33.333 24.62 21.94 45.99 3.02
3741 3906 6.771188 ATTCTGAGTTTGTACGAACAAGAG 57.229 37.500 24.62 16.85 45.99 2.85
3742 3907 4.617959 TCTGAGTTTGTACGAACAAGAGG 58.382 43.478 24.62 11.61 45.99 3.69
3752 3917 2.748058 GAACAAGAGGAAGGCGGCCA 62.748 60.000 23.09 0.00 0.00 5.36
3763 3928 0.894835 AGGCGGCCAATTTACCAAAG 59.105 50.000 23.09 0.00 0.00 2.77
3764 3929 0.108377 GGCGGCCAATTTACCAAAGG 60.108 55.000 15.62 0.00 0.00 3.11
3765 3930 0.108377 GCGGCCAATTTACCAAAGGG 60.108 55.000 2.24 0.00 41.29 3.95
3782 3947 7.184067 CCAAAGGGTATGTCTAAGTCTTAGT 57.816 40.000 17.35 3.51 34.81 2.24
3783 3948 7.266400 CCAAAGGGTATGTCTAAGTCTTAGTC 58.734 42.308 17.35 13.18 34.81 2.59
3784 3949 6.696441 AAGGGTATGTCTAAGTCTTAGTCG 57.304 41.667 17.35 0.00 34.81 4.18
3785 3950 5.999044 AGGGTATGTCTAAGTCTTAGTCGA 58.001 41.667 17.35 5.32 34.81 4.20
3786 3951 5.821995 AGGGTATGTCTAAGTCTTAGTCGAC 59.178 44.000 17.35 7.70 34.81 4.20
3787 3952 5.821995 GGGTATGTCTAAGTCTTAGTCGACT 59.178 44.000 23.66 23.66 45.73 4.18
3788 3953 6.238429 GGGTATGTCTAAGTCTTAGTCGACTG 60.238 46.154 28.12 12.46 43.14 3.51
3789 3954 6.538021 GGTATGTCTAAGTCTTAGTCGACTGA 59.462 42.308 28.12 19.13 43.14 3.41
3790 3955 6.671614 ATGTCTAAGTCTTAGTCGACTGAG 57.328 41.667 26.80 26.80 43.14 3.35
3791 3956 5.791666 TGTCTAAGTCTTAGTCGACTGAGA 58.208 41.667 30.05 30.05 45.21 3.27
3802 3967 4.688511 GTCGACTGAGACTTCACTATGT 57.311 45.455 8.70 0.00 38.09 2.29
3803 3968 4.654015 GTCGACTGAGACTTCACTATGTC 58.346 47.826 8.70 0.00 38.09 3.06
3804 3969 4.393680 GTCGACTGAGACTTCACTATGTCT 59.606 45.833 8.70 0.00 45.06 3.41
3810 3975 4.955925 AGACTTCACTATGTCTCAGTCG 57.044 45.455 0.00 0.00 39.04 4.18
3811 3976 4.580868 AGACTTCACTATGTCTCAGTCGA 58.419 43.478 0.00 0.00 39.04 4.20
3812 3977 5.004448 AGACTTCACTATGTCTCAGTCGAA 58.996 41.667 0.00 0.00 39.04 3.71
3813 3978 5.650266 AGACTTCACTATGTCTCAGTCGAAT 59.350 40.000 0.00 0.00 39.04 3.34
3814 3979 5.645624 ACTTCACTATGTCTCAGTCGAATG 58.354 41.667 6.51 6.51 0.00 2.67
3815 3980 5.416013 ACTTCACTATGTCTCAGTCGAATGA 59.584 40.000 15.60 15.60 0.00 2.57
3816 3981 5.236655 TCACTATGTCTCAGTCGAATGAC 57.763 43.478 12.21 4.54 45.86 3.06
3828 3993 4.740185 GTCGAATGACGTCATCTTGTAC 57.260 45.455 30.06 18.99 43.13 2.90
3829 3994 3.237660 GTCGAATGACGTCATCTTGTACG 59.762 47.826 30.06 24.06 44.47 3.67
3837 4002 3.369385 CGTCATCTTGTACGTATGGTCC 58.631 50.000 0.00 0.00 34.48 4.46
3838 4003 3.066342 CGTCATCTTGTACGTATGGTCCT 59.934 47.826 0.00 0.00 34.48 3.85
3839 4004 4.360563 GTCATCTTGTACGTATGGTCCTG 58.639 47.826 0.00 0.00 0.00 3.86
3840 4005 4.021229 TCATCTTGTACGTATGGTCCTGT 58.979 43.478 0.00 0.00 0.00 4.00
3841 4006 4.464951 TCATCTTGTACGTATGGTCCTGTT 59.535 41.667 0.00 0.00 0.00 3.16
3842 4007 4.877378 TCTTGTACGTATGGTCCTGTTT 57.123 40.909 0.00 0.00 0.00 2.83
3843 4008 4.562082 TCTTGTACGTATGGTCCTGTTTG 58.438 43.478 0.00 0.00 0.00 2.93
3844 4009 4.281435 TCTTGTACGTATGGTCCTGTTTGA 59.719 41.667 0.00 0.00 0.00 2.69
3845 4010 4.811969 TGTACGTATGGTCCTGTTTGAT 57.188 40.909 0.00 0.00 0.00 2.57
3846 4011 4.751060 TGTACGTATGGTCCTGTTTGATC 58.249 43.478 0.00 0.00 0.00 2.92
3847 4012 2.888594 ACGTATGGTCCTGTTTGATCG 58.111 47.619 0.00 0.00 0.00 3.69
3848 4013 2.232941 ACGTATGGTCCTGTTTGATCGT 59.767 45.455 0.00 0.00 0.00 3.73
3849 4014 3.444742 ACGTATGGTCCTGTTTGATCGTA 59.555 43.478 0.00 0.00 0.00 3.43
3850 4015 4.042398 CGTATGGTCCTGTTTGATCGTAG 58.958 47.826 0.00 0.00 0.00 3.51
3851 4016 4.439700 CGTATGGTCCTGTTTGATCGTAGT 60.440 45.833 0.00 0.00 0.00 2.73
3852 4017 4.553330 ATGGTCCTGTTTGATCGTAGTT 57.447 40.909 0.00 0.00 0.00 2.24
3853 4018 4.345859 TGGTCCTGTTTGATCGTAGTTT 57.654 40.909 0.00 0.00 0.00 2.66
3854 4019 4.312443 TGGTCCTGTTTGATCGTAGTTTC 58.688 43.478 0.00 0.00 0.00 2.78
3855 4020 4.039973 TGGTCCTGTTTGATCGTAGTTTCT 59.960 41.667 0.00 0.00 0.00 2.52
3856 4021 4.389077 GGTCCTGTTTGATCGTAGTTTCTG 59.611 45.833 0.00 0.00 0.00 3.02
3857 4022 5.227908 GTCCTGTTTGATCGTAGTTTCTGA 58.772 41.667 0.00 0.00 0.00 3.27
3858 4023 5.869888 GTCCTGTTTGATCGTAGTTTCTGAT 59.130 40.000 0.00 0.00 0.00 2.90
3859 4024 6.035112 GTCCTGTTTGATCGTAGTTTCTGATC 59.965 42.308 0.00 0.00 39.13 2.92
3860 4025 5.004821 CCTGTTTGATCGTAGTTTCTGATCG 59.995 44.000 0.00 0.00 41.06 3.69
3861 4026 4.326278 TGTTTGATCGTAGTTTCTGATCGC 59.674 41.667 0.00 0.00 41.06 4.58
3862 4027 4.371855 TTGATCGTAGTTTCTGATCGCT 57.628 40.909 0.00 0.00 41.06 4.93
3863 4028 3.695816 TGATCGTAGTTTCTGATCGCTG 58.304 45.455 0.00 0.00 41.06 5.18
3864 4029 2.561733 TCGTAGTTTCTGATCGCTGG 57.438 50.000 0.00 0.00 0.00 4.85
3865 4030 0.924090 CGTAGTTTCTGATCGCTGGC 59.076 55.000 0.00 0.00 0.00 4.85
3866 4031 1.469940 CGTAGTTTCTGATCGCTGGCT 60.470 52.381 0.00 0.00 0.00 4.75
3867 4032 2.622436 GTAGTTTCTGATCGCTGGCTT 58.378 47.619 0.00 0.00 0.00 4.35
3868 4033 3.733988 CGTAGTTTCTGATCGCTGGCTTA 60.734 47.826 0.00 0.00 0.00 3.09
3869 4034 3.550437 AGTTTCTGATCGCTGGCTTAT 57.450 42.857 0.00 0.00 0.00 1.73
3870 4035 3.201290 AGTTTCTGATCGCTGGCTTATG 58.799 45.455 0.00 0.00 0.00 1.90
3871 4036 3.118629 AGTTTCTGATCGCTGGCTTATGA 60.119 43.478 0.00 0.00 0.00 2.15
3872 4037 3.758755 TTCTGATCGCTGGCTTATGAT 57.241 42.857 0.00 0.00 0.00 2.45
3873 4038 3.036075 TCTGATCGCTGGCTTATGATG 57.964 47.619 0.00 0.00 0.00 3.07
3874 4039 2.366590 TCTGATCGCTGGCTTATGATGT 59.633 45.455 0.00 0.00 0.00 3.06
3875 4040 3.136763 CTGATCGCTGGCTTATGATGTT 58.863 45.455 0.00 0.00 0.00 2.71
3876 4041 3.544684 TGATCGCTGGCTTATGATGTTT 58.455 40.909 0.00 0.00 0.00 2.83
3877 4042 3.313249 TGATCGCTGGCTTATGATGTTTG 59.687 43.478 0.00 0.00 0.00 2.93
3878 4043 1.401552 TCGCTGGCTTATGATGTTTGC 59.598 47.619 0.00 0.00 0.00 3.68
3879 4044 1.402968 CGCTGGCTTATGATGTTTGCT 59.597 47.619 0.00 0.00 0.00 3.91
3880 4045 2.159338 CGCTGGCTTATGATGTTTGCTT 60.159 45.455 0.00 0.00 0.00 3.91
3881 4046 3.184541 GCTGGCTTATGATGTTTGCTTG 58.815 45.455 0.00 0.00 0.00 4.01
3882 4047 3.367703 GCTGGCTTATGATGTTTGCTTGT 60.368 43.478 0.00 0.00 0.00 3.16
3883 4048 4.813027 CTGGCTTATGATGTTTGCTTGTT 58.187 39.130 0.00 0.00 0.00 2.83
3884 4049 4.558178 TGGCTTATGATGTTTGCTTGTTG 58.442 39.130 0.00 0.00 0.00 3.33
3885 4050 3.928375 GGCTTATGATGTTTGCTTGTTGG 59.072 43.478 0.00 0.00 0.00 3.77
3886 4051 3.928375 GCTTATGATGTTTGCTTGTTGGG 59.072 43.478 0.00 0.00 0.00 4.12
3887 4052 2.460757 ATGATGTTTGCTTGTTGGGC 57.539 45.000 0.00 0.00 0.00 5.36
3888 4053 1.412079 TGATGTTTGCTTGTTGGGCT 58.588 45.000 0.00 0.00 0.00 5.19
3889 4054 1.761784 TGATGTTTGCTTGTTGGGCTT 59.238 42.857 0.00 0.00 0.00 4.35
3890 4055 2.137523 GATGTTTGCTTGTTGGGCTTG 58.862 47.619 0.00 0.00 0.00 4.01
3891 4056 0.461693 TGTTTGCTTGTTGGGCTTGC 60.462 50.000 0.00 0.00 0.00 4.01
3892 4057 0.179076 GTTTGCTTGTTGGGCTTGCT 60.179 50.000 0.00 0.00 0.00 3.91
3893 4058 0.540923 TTTGCTTGTTGGGCTTGCTT 59.459 45.000 0.00 0.00 0.00 3.91
3894 4059 0.179078 TTGCTTGTTGGGCTTGCTTG 60.179 50.000 0.00 0.00 0.00 4.01
3895 4060 1.329171 TGCTTGTTGGGCTTGCTTGT 61.329 50.000 0.00 0.00 0.00 3.16
3896 4061 0.877213 GCTTGTTGGGCTTGCTTGTG 60.877 55.000 0.00 0.00 0.00 3.33
3897 4062 0.249573 CTTGTTGGGCTTGCTTGTGG 60.250 55.000 0.00 0.00 0.00 4.17
3898 4063 1.684386 TTGTTGGGCTTGCTTGTGGG 61.684 55.000 0.00 0.00 0.00 4.61
3899 4064 3.233231 TTGGGCTTGCTTGTGGGC 61.233 61.111 0.00 0.00 0.00 5.36
3900 4065 3.754586 TTGGGCTTGCTTGTGGGCT 62.755 57.895 0.00 0.00 0.00 5.19
3901 4066 3.376918 GGGCTTGCTTGTGGGCTC 61.377 66.667 0.00 0.00 0.00 4.70
3902 4067 3.741476 GGCTTGCTTGTGGGCTCG 61.741 66.667 0.00 0.00 0.00 5.03
3903 4068 3.741476 GCTTGCTTGTGGGCTCGG 61.741 66.667 0.00 0.00 0.00 4.63
3904 4069 2.281761 CTTGCTTGTGGGCTCGGT 60.282 61.111 0.00 0.00 0.00 4.69
3905 4070 2.594303 TTGCTTGTGGGCTCGGTG 60.594 61.111 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.892425 CAAGAGACATCGGCGGCC 60.892 66.667 9.54 9.54 0.00 6.13
5 6 2.892425 CCAAGAGACATCGGCGGC 60.892 66.667 7.21 0.00 0.00 6.53
6 7 1.519455 GACCAAGAGACATCGGCGG 60.519 63.158 7.21 0.00 0.00 6.13
7 8 0.803768 CAGACCAAGAGACATCGGCG 60.804 60.000 0.00 0.00 0.00 6.46
8 9 1.086634 GCAGACCAAGAGACATCGGC 61.087 60.000 0.00 0.00 0.00 5.54
9 10 0.247460 TGCAGACCAAGAGACATCGG 59.753 55.000 0.00 0.00 0.00 4.18
10 11 2.200067 GATGCAGACCAAGAGACATCG 58.800 52.381 0.00 0.00 0.00 3.84
11 12 2.159184 TCGATGCAGACCAAGAGACATC 60.159 50.000 0.00 0.00 0.00 3.06
12 13 1.827344 TCGATGCAGACCAAGAGACAT 59.173 47.619 0.00 0.00 0.00 3.06
13 14 1.067565 GTCGATGCAGACCAAGAGACA 60.068 52.381 0.00 0.00 35.22 3.41
14 15 1.634702 GTCGATGCAGACCAAGAGAC 58.365 55.000 0.00 0.00 35.22 3.36
15 16 0.171231 CGTCGATGCAGACCAAGAGA 59.829 55.000 0.00 0.00 37.85 3.10
16 17 0.803768 CCGTCGATGCAGACCAAGAG 60.804 60.000 0.00 0.00 37.85 2.85
17 18 1.215382 CCGTCGATGCAGACCAAGA 59.785 57.895 0.00 0.00 37.85 3.02
18 19 0.670546 AACCGTCGATGCAGACCAAG 60.671 55.000 0.00 0.00 37.85 3.61
19 20 0.250124 AAACCGTCGATGCAGACCAA 60.250 50.000 0.00 0.00 37.85 3.67
20 21 0.250124 AAAACCGTCGATGCAGACCA 60.250 50.000 0.00 0.00 37.85 4.02
21 22 1.717194 TAAAACCGTCGATGCAGACC 58.283 50.000 0.00 0.00 37.85 3.85
22 23 2.471749 CGTTAAAACCGTCGATGCAGAC 60.472 50.000 0.00 0.00 37.76 3.51
23 24 1.722464 CGTTAAAACCGTCGATGCAGA 59.278 47.619 0.00 0.00 0.00 4.26
24 25 1.201877 CCGTTAAAACCGTCGATGCAG 60.202 52.381 0.00 0.00 0.00 4.41
25 26 0.791422 CCGTTAAAACCGTCGATGCA 59.209 50.000 0.00 0.00 0.00 3.96
26 27 0.519792 GCCGTTAAAACCGTCGATGC 60.520 55.000 0.00 0.00 0.00 3.91
27 28 0.095762 GGCCGTTAAAACCGTCGATG 59.904 55.000 0.00 0.00 0.00 3.84
28 29 1.353609 CGGCCGTTAAAACCGTCGAT 61.354 55.000 19.50 0.00 42.01 3.59
29 30 2.021039 CGGCCGTTAAAACCGTCGA 61.021 57.895 19.50 0.00 42.01 4.20
30 31 2.471166 CGGCCGTTAAAACCGTCG 59.529 61.111 19.50 0.00 42.01 5.12
34 35 2.126618 GCAGCGGCCGTTAAAACC 60.127 61.111 28.70 7.91 0.00 3.27
35 36 0.728129 GAAGCAGCGGCCGTTAAAAC 60.728 55.000 28.70 8.76 42.56 2.43
36 37 0.887387 AGAAGCAGCGGCCGTTAAAA 60.887 50.000 28.70 0.00 42.56 1.52
37 38 0.037139 TAGAAGCAGCGGCCGTTAAA 60.037 50.000 28.70 1.40 42.56 1.52
38 39 0.738412 GTAGAAGCAGCGGCCGTTAA 60.738 55.000 28.70 1.78 42.56 2.01
39 40 1.153706 GTAGAAGCAGCGGCCGTTA 60.154 57.895 28.70 0.28 42.56 3.18
40 41 2.434359 GTAGAAGCAGCGGCCGTT 60.434 61.111 28.70 20.13 42.56 4.44
41 42 3.234630 TTGTAGAAGCAGCGGCCGT 62.235 57.895 28.70 11.01 42.56 5.68
42 43 2.434185 TTGTAGAAGCAGCGGCCG 60.434 61.111 24.05 24.05 42.56 6.13
43 44 0.955919 AACTTGTAGAAGCAGCGGCC 60.956 55.000 4.82 0.00 42.56 6.13
44 45 0.444260 GAACTTGTAGAAGCAGCGGC 59.556 55.000 0.00 0.00 41.61 6.53
45 46 1.079503 GGAACTTGTAGAAGCAGCGG 58.920 55.000 0.00 0.00 31.68 5.52
46 47 1.728971 CAGGAACTTGTAGAAGCAGCG 59.271 52.381 0.00 0.00 34.60 5.18
47 48 2.079925 CCAGGAACTTGTAGAAGCAGC 58.920 52.381 0.00 0.00 34.60 5.25
48 49 2.039084 ACCCAGGAACTTGTAGAAGCAG 59.961 50.000 0.00 0.00 34.60 4.24
49 50 2.054799 ACCCAGGAACTTGTAGAAGCA 58.945 47.619 0.00 0.00 34.60 3.91
50 51 2.861147 ACCCAGGAACTTGTAGAAGC 57.139 50.000 0.00 0.00 34.60 3.86
51 52 8.857694 TTTATAAACCCAGGAACTTGTAGAAG 57.142 34.615 0.00 0.00 34.60 2.85
52 53 9.292195 CTTTTATAAACCCAGGAACTTGTAGAA 57.708 33.333 0.00 0.00 34.60 2.10
53 54 8.442374 ACTTTTATAAACCCAGGAACTTGTAGA 58.558 33.333 0.00 0.00 34.60 2.59
54 55 8.631480 ACTTTTATAAACCCAGGAACTTGTAG 57.369 34.615 0.00 0.00 34.60 2.74
55 56 8.999905 AACTTTTATAAACCCAGGAACTTGTA 57.000 30.769 0.00 0.00 34.60 2.41
56 57 7.907841 AACTTTTATAAACCCAGGAACTTGT 57.092 32.000 0.00 0.00 34.60 3.16
57 58 8.027189 GCTAACTTTTATAAACCCAGGAACTTG 58.973 37.037 0.00 0.00 34.60 3.16
58 59 7.948447 AGCTAACTTTTATAAACCCAGGAACTT 59.052 33.333 0.00 0.00 34.60 2.66
59 60 7.467650 AGCTAACTTTTATAAACCCAGGAACT 58.532 34.615 0.00 0.00 43.88 3.01
60 61 7.148120 GGAGCTAACTTTTATAAACCCAGGAAC 60.148 40.741 0.00 0.00 0.00 3.62
61 62 6.888088 GGAGCTAACTTTTATAAACCCAGGAA 59.112 38.462 0.00 0.00 0.00 3.36
62 63 6.420638 GGAGCTAACTTTTATAAACCCAGGA 58.579 40.000 0.00 0.00 0.00 3.86
63 64 5.296035 CGGAGCTAACTTTTATAAACCCAGG 59.704 44.000 0.00 0.00 0.00 4.45
64 65 6.359480 CGGAGCTAACTTTTATAAACCCAG 57.641 41.667 0.00 0.00 0.00 4.45
84 85 3.303135 AGTCTCCACTTGCGCGGA 61.303 61.111 8.83 0.00 0.00 5.54
85 86 3.114616 CAGTCTCCACTTGCGCGG 61.115 66.667 8.83 0.00 0.00 6.46
86 87 2.049156 TCAGTCTCCACTTGCGCG 60.049 61.111 0.00 0.00 0.00 6.86
87 88 0.735632 CTCTCAGTCTCCACTTGCGC 60.736 60.000 0.00 0.00 0.00 6.09
88 89 0.108898 CCTCTCAGTCTCCACTTGCG 60.109 60.000 0.00 0.00 0.00 4.85
89 90 0.972883 ACCTCTCAGTCTCCACTTGC 59.027 55.000 0.00 0.00 0.00 4.01
90 91 2.029470 GTCACCTCTCAGTCTCCACTTG 60.029 54.545 0.00 0.00 0.00 3.16
91 92 2.243810 GTCACCTCTCAGTCTCCACTT 58.756 52.381 0.00 0.00 0.00 3.16
92 93 1.145945 TGTCACCTCTCAGTCTCCACT 59.854 52.381 0.00 0.00 0.00 4.00
93 94 1.621992 TGTCACCTCTCAGTCTCCAC 58.378 55.000 0.00 0.00 0.00 4.02
94 95 2.225117 TGATGTCACCTCTCAGTCTCCA 60.225 50.000 0.00 0.00 0.00 3.86
95 96 2.451490 TGATGTCACCTCTCAGTCTCC 58.549 52.381 0.00 0.00 0.00 3.71
96 97 3.675775 GCTTGATGTCACCTCTCAGTCTC 60.676 52.174 0.00 0.00 0.00 3.36
97 98 2.233431 GCTTGATGTCACCTCTCAGTCT 59.767 50.000 0.00 0.00 0.00 3.24
98 99 2.233431 AGCTTGATGTCACCTCTCAGTC 59.767 50.000 0.00 0.00 0.00 3.51
99 100 2.255406 AGCTTGATGTCACCTCTCAGT 58.745 47.619 0.00 0.00 0.00 3.41
100 101 4.370049 CATAGCTTGATGTCACCTCTCAG 58.630 47.826 0.00 0.00 0.00 3.35
101 102 3.431346 GCATAGCTTGATGTCACCTCTCA 60.431 47.826 0.00 0.00 0.00 3.27
102 103 3.129871 GCATAGCTTGATGTCACCTCTC 58.870 50.000 0.00 0.00 0.00 3.20
103 104 2.770802 AGCATAGCTTGATGTCACCTCT 59.229 45.455 0.00 0.00 33.89 3.69
104 105 3.129871 GAGCATAGCTTGATGTCACCTC 58.870 50.000 0.00 0.00 39.88 3.85
105 106 2.502947 TGAGCATAGCTTGATGTCACCT 59.497 45.455 0.00 0.00 39.88 4.00
106 107 2.611292 GTGAGCATAGCTTGATGTCACC 59.389 50.000 14.72 4.82 39.88 4.02
107 108 2.283617 CGTGAGCATAGCTTGATGTCAC 59.716 50.000 15.21 15.21 39.88 3.67
108 109 2.543641 CGTGAGCATAGCTTGATGTCA 58.456 47.619 0.00 0.00 39.88 3.58
109 110 1.863454 CCGTGAGCATAGCTTGATGTC 59.137 52.381 0.00 0.00 39.88 3.06
110 111 1.945387 CCGTGAGCATAGCTTGATGT 58.055 50.000 0.00 0.00 39.88 3.06
111 112 0.585357 GCCGTGAGCATAGCTTGATG 59.415 55.000 0.00 0.00 39.88 3.07
112 113 0.877649 CGCCGTGAGCATAGCTTGAT 60.878 55.000 0.00 0.00 44.04 2.57
113 114 1.519234 CGCCGTGAGCATAGCTTGA 60.519 57.895 0.00 0.00 44.04 3.02
114 115 3.009140 CGCCGTGAGCATAGCTTG 58.991 61.111 0.00 0.00 44.04 4.01
115 116 2.892425 GCGCCGTGAGCATAGCTT 60.892 61.111 0.00 0.00 44.04 3.74
116 117 3.781770 GAGCGCCGTGAGCATAGCT 62.782 63.158 2.29 0.00 44.04 3.32
117 118 3.333969 GAGCGCCGTGAGCATAGC 61.334 66.667 2.29 0.00 44.04 2.97
118 119 2.659897 GGAGCGCCGTGAGCATAG 60.660 66.667 2.29 0.00 44.04 2.23
119 120 3.457263 TGGAGCGCCGTGAGCATA 61.457 61.111 2.29 0.00 44.04 3.14
123 124 2.607668 TATTCGTGGAGCGCCGTGAG 62.608 60.000 2.29 0.00 41.07 3.51
124 125 2.011741 ATATTCGTGGAGCGCCGTGA 62.012 55.000 2.29 0.00 41.07 4.35
125 126 0.318360 TATATTCGTGGAGCGCCGTG 60.318 55.000 2.29 0.00 41.07 4.94
126 127 0.601558 ATATATTCGTGGAGCGCCGT 59.398 50.000 2.29 0.00 41.07 5.68
127 128 1.269166 GATATATTCGTGGAGCGCCG 58.731 55.000 2.29 0.00 41.07 6.46
128 129 1.269166 CGATATATTCGTGGAGCGCC 58.731 55.000 2.29 0.00 43.01 6.53
138 139 4.143179 CCGAAAAGGCCGAACGATATATTC 60.143 45.833 14.04 1.31 0.00 1.75
139 140 3.744426 CCGAAAAGGCCGAACGATATATT 59.256 43.478 14.04 0.00 0.00 1.28
140 141 3.006110 TCCGAAAAGGCCGAACGATATAT 59.994 43.478 14.04 0.00 40.77 0.86
141 142 2.361757 TCCGAAAAGGCCGAACGATATA 59.638 45.455 14.04 0.00 40.77 0.86
142 143 1.137479 TCCGAAAAGGCCGAACGATAT 59.863 47.619 14.04 0.00 40.77 1.63
143 144 0.531657 TCCGAAAAGGCCGAACGATA 59.468 50.000 14.04 2.33 40.77 2.92
144 145 0.320946 TTCCGAAAAGGCCGAACGAT 60.321 50.000 14.04 0.00 40.77 3.73
145 146 0.320946 ATTCCGAAAAGGCCGAACGA 60.321 50.000 14.04 0.00 40.77 3.85
146 147 1.361793 TATTCCGAAAAGGCCGAACG 58.638 50.000 0.00 2.16 40.77 3.95
147 148 6.980051 ATATATATTCCGAAAAGGCCGAAC 57.020 37.500 0.00 0.00 40.77 3.95
200 201 8.672815 CAAGATTTACCCAAGCAAAAAGAAAAA 58.327 29.630 0.00 0.00 0.00 1.94
201 202 8.043710 TCAAGATTTACCCAAGCAAAAAGAAAA 58.956 29.630 0.00 0.00 0.00 2.29
202 203 7.494298 GTCAAGATTTACCCAAGCAAAAAGAAA 59.506 33.333 0.00 0.00 0.00 2.52
203 204 6.983890 GTCAAGATTTACCCAAGCAAAAAGAA 59.016 34.615 0.00 0.00 0.00 2.52
204 205 6.512297 GTCAAGATTTACCCAAGCAAAAAGA 58.488 36.000 0.00 0.00 0.00 2.52
205 206 5.402270 CGTCAAGATTTACCCAAGCAAAAAG 59.598 40.000 0.00 0.00 0.00 2.27
206 207 5.163499 ACGTCAAGATTTACCCAAGCAAAAA 60.163 36.000 0.00 0.00 0.00 1.94
207 208 4.339814 ACGTCAAGATTTACCCAAGCAAAA 59.660 37.500 0.00 0.00 0.00 2.44
208 209 3.886505 ACGTCAAGATTTACCCAAGCAAA 59.113 39.130 0.00 0.00 0.00 3.68
209 210 3.482436 ACGTCAAGATTTACCCAAGCAA 58.518 40.909 0.00 0.00 0.00 3.91
210 211 3.071479 GACGTCAAGATTTACCCAAGCA 58.929 45.455 11.55 0.00 0.00 3.91
211 212 3.071479 TGACGTCAAGATTTACCCAAGC 58.929 45.455 17.62 0.00 0.00 4.01
212 213 4.566004 TCTGACGTCAAGATTTACCCAAG 58.434 43.478 20.49 2.96 0.00 3.61
213 214 4.610605 TCTGACGTCAAGATTTACCCAA 57.389 40.909 20.49 0.00 0.00 4.12
214 215 4.819105 ATCTGACGTCAAGATTTACCCA 57.181 40.909 20.49 0.00 0.00 4.51
215 216 5.875359 AGAAATCTGACGTCAAGATTTACCC 59.125 40.000 32.36 25.58 40.87 3.69
216 217 6.969828 AGAAATCTGACGTCAAGATTTACC 57.030 37.500 32.36 25.99 40.87 2.85
218 219 9.869757 TGATTAGAAATCTGACGTCAAGATTTA 57.130 29.630 32.36 24.78 40.87 1.40
219 220 8.777865 TGATTAGAAATCTGACGTCAAGATTT 57.222 30.769 32.57 32.57 42.69 2.17
220 221 8.824781 CATGATTAGAAATCTGACGTCAAGATT 58.175 33.333 24.92 24.92 34.17 2.40
221 222 7.440556 CCATGATTAGAAATCTGACGTCAAGAT 59.559 37.037 20.49 19.42 0.00 2.40
222 223 6.758416 CCATGATTAGAAATCTGACGTCAAGA 59.242 38.462 20.49 18.11 0.00 3.02
223 224 6.536582 ACCATGATTAGAAATCTGACGTCAAG 59.463 38.462 20.49 13.46 0.00 3.02
224 225 6.406370 ACCATGATTAGAAATCTGACGTCAA 58.594 36.000 20.49 11.00 0.00 3.18
225 226 5.977635 ACCATGATTAGAAATCTGACGTCA 58.022 37.500 18.88 18.88 0.00 4.35
226 227 7.426410 TCTACCATGATTAGAAATCTGACGTC 58.574 38.462 9.11 9.11 0.00 4.34
227 228 7.348080 TCTACCATGATTAGAAATCTGACGT 57.652 36.000 0.00 0.00 0.00 4.34
228 229 8.706936 CAATCTACCATGATTAGAAATCTGACG 58.293 37.037 7.78 0.00 35.18 4.35
229 230 9.770097 TCAATCTACCATGATTAGAAATCTGAC 57.230 33.333 7.78 0.00 35.18 3.51
232 233 9.265901 CGTTCAATCTACCATGATTAGAAATCT 57.734 33.333 7.78 0.00 35.18 2.40
233 234 9.046296 ACGTTCAATCTACCATGATTAGAAATC 57.954 33.333 7.78 0.00 35.18 2.17
234 235 8.964476 ACGTTCAATCTACCATGATTAGAAAT 57.036 30.769 7.78 0.00 35.18 2.17
235 236 8.786826 AACGTTCAATCTACCATGATTAGAAA 57.213 30.769 0.00 0.00 35.18 2.52
236 237 8.786826 AAACGTTCAATCTACCATGATTAGAA 57.213 30.769 0.00 0.00 35.18 2.10
237 238 8.786826 AAAACGTTCAATCTACCATGATTAGA 57.213 30.769 0.00 0.00 35.18 2.10
260 261 7.906010 CCGCGACAGTATAATTTGTCATAAAAA 59.094 33.333 8.23 0.00 42.94 1.94
261 262 7.403421 CCGCGACAGTATAATTTGTCATAAAA 58.597 34.615 8.23 0.00 42.94 1.52
262 263 6.018588 CCCGCGACAGTATAATTTGTCATAAA 60.019 38.462 8.23 0.00 42.94 1.40
263 264 5.464057 CCCGCGACAGTATAATTTGTCATAA 59.536 40.000 8.23 0.00 42.94 1.90
264 265 4.986034 CCCGCGACAGTATAATTTGTCATA 59.014 41.667 8.23 0.00 42.94 2.15
265 266 3.807622 CCCGCGACAGTATAATTTGTCAT 59.192 43.478 8.23 0.00 42.94 3.06
266 267 3.191669 CCCGCGACAGTATAATTTGTCA 58.808 45.455 8.23 0.00 42.94 3.58
267 268 2.542595 CCCCGCGACAGTATAATTTGTC 59.457 50.000 8.23 0.00 40.16 3.18
268 269 2.168936 TCCCCGCGACAGTATAATTTGT 59.831 45.455 8.23 0.00 0.00 2.83
269 270 2.828877 TCCCCGCGACAGTATAATTTG 58.171 47.619 8.23 0.00 0.00 2.32
270 271 3.399330 CATCCCCGCGACAGTATAATTT 58.601 45.455 8.23 0.00 0.00 1.82
271 272 2.289444 CCATCCCCGCGACAGTATAATT 60.289 50.000 8.23 0.00 0.00 1.40
272 273 1.275291 CCATCCCCGCGACAGTATAAT 59.725 52.381 8.23 0.00 0.00 1.28
273 274 0.677288 CCATCCCCGCGACAGTATAA 59.323 55.000 8.23 0.00 0.00 0.98
274 275 1.812686 GCCATCCCCGCGACAGTATA 61.813 60.000 8.23 0.00 0.00 1.47
275 276 3.138625 CCATCCCCGCGACAGTAT 58.861 61.111 8.23 0.00 0.00 2.12
276 277 3.845259 GCCATCCCCGCGACAGTA 61.845 66.667 8.23 0.00 0.00 2.74
278 279 4.776322 TTGCCATCCCCGCGACAG 62.776 66.667 8.23 0.00 0.00 3.51
279 280 3.636929 AATTGCCATCCCCGCGACA 62.637 57.895 8.23 0.00 0.00 4.35
280 281 1.944234 AAAATTGCCATCCCCGCGAC 61.944 55.000 8.23 0.00 0.00 5.19
281 282 0.394488 TAAAATTGCCATCCCCGCGA 60.394 50.000 8.23 0.00 0.00 5.87
282 283 0.673437 ATAAAATTGCCATCCCCGCG 59.327 50.000 0.00 0.00 0.00 6.46
283 284 1.686052 TGATAAAATTGCCATCCCCGC 59.314 47.619 0.00 0.00 0.00 6.13
284 285 2.692557 TGTGATAAAATTGCCATCCCCG 59.307 45.455 0.00 0.00 0.00 5.73
285 286 4.961438 ATGTGATAAAATTGCCATCCCC 57.039 40.909 0.00 0.00 0.00 4.81
286 287 8.776470 CAAATTATGTGATAAAATTGCCATCCC 58.224 33.333 0.00 0.00 0.00 3.85
287 288 9.328845 ACAAATTATGTGATAAAATTGCCATCC 57.671 29.630 0.00 0.00 41.93 3.51
289 290 9.887629 TGACAAATTATGTGATAAAATTGCCAT 57.112 25.926 0.00 0.00 44.12 4.40
290 291 9.887629 ATGACAAATTATGTGATAAAATTGCCA 57.112 25.926 0.00 0.00 44.12 4.92
298 299 8.603181 CGTGTGAGATGACAAATTATGTGATAA 58.397 33.333 0.00 0.00 44.12 1.75
299 300 7.763985 ACGTGTGAGATGACAAATTATGTGATA 59.236 33.333 0.00 0.00 44.12 2.15
300 301 6.595326 ACGTGTGAGATGACAAATTATGTGAT 59.405 34.615 0.00 0.00 44.12 3.06
301 302 5.931724 ACGTGTGAGATGACAAATTATGTGA 59.068 36.000 0.00 0.00 44.12 3.58
302 303 6.169419 ACGTGTGAGATGACAAATTATGTG 57.831 37.500 0.00 0.00 44.12 3.21
304 305 7.852454 CCAATACGTGTGAGATGACAAATTATG 59.148 37.037 0.00 0.00 0.00 1.90
305 306 7.768582 TCCAATACGTGTGAGATGACAAATTAT 59.231 33.333 0.00 0.00 0.00 1.28
306 307 7.100409 TCCAATACGTGTGAGATGACAAATTA 58.900 34.615 0.00 0.00 0.00 1.40
307 308 5.937540 TCCAATACGTGTGAGATGACAAATT 59.062 36.000 0.00 0.00 0.00 1.82
308 309 5.487433 TCCAATACGTGTGAGATGACAAAT 58.513 37.500 0.00 0.00 0.00 2.32
309 310 4.888917 TCCAATACGTGTGAGATGACAAA 58.111 39.130 0.00 0.00 0.00 2.83
310 311 4.529109 TCCAATACGTGTGAGATGACAA 57.471 40.909 0.00 0.00 0.00 3.18
311 312 4.736126 ATCCAATACGTGTGAGATGACA 57.264 40.909 0.00 0.00 0.00 3.58
312 313 5.727791 GCAAATCCAATACGTGTGAGATGAC 60.728 44.000 0.00 0.00 0.00 3.06
313 314 4.332543 GCAAATCCAATACGTGTGAGATGA 59.667 41.667 0.00 0.00 0.00 2.92
314 315 4.496341 GGCAAATCCAATACGTGTGAGATG 60.496 45.833 0.00 0.00 34.01 2.90
315 316 3.627577 GGCAAATCCAATACGTGTGAGAT 59.372 43.478 0.00 0.00 34.01 2.75
316 317 3.006940 GGCAAATCCAATACGTGTGAGA 58.993 45.455 0.00 0.00 34.01 3.27
317 318 2.746904 TGGCAAATCCAATACGTGTGAG 59.253 45.455 0.00 0.00 43.21 3.51
318 319 2.784347 TGGCAAATCCAATACGTGTGA 58.216 42.857 0.00 0.00 43.21 3.58
329 330 5.292589 CACAGATTTTTAGCATGGCAAATCC 59.707 40.000 0.00 0.00 36.63 3.01
330 331 5.292589 CCACAGATTTTTAGCATGGCAAATC 59.707 40.000 0.00 0.00 36.34 2.17
331 332 5.180271 CCACAGATTTTTAGCATGGCAAAT 58.820 37.500 0.00 0.00 0.00 2.32
332 333 4.040217 ACCACAGATTTTTAGCATGGCAAA 59.960 37.500 0.00 0.00 0.00 3.68
333 334 3.577848 ACCACAGATTTTTAGCATGGCAA 59.422 39.130 0.00 0.00 0.00 4.52
334 335 3.164268 ACCACAGATTTTTAGCATGGCA 58.836 40.909 0.00 0.00 0.00 4.92
335 336 3.874392 ACCACAGATTTTTAGCATGGC 57.126 42.857 0.00 0.00 0.00 4.40
336 337 5.389859 TGAACCACAGATTTTTAGCATGG 57.610 39.130 0.00 0.00 0.00 3.66
337 338 7.894376 AATTGAACCACAGATTTTTAGCATG 57.106 32.000 0.00 0.00 0.00 4.06
802 804 6.465948 CCATTTCTCATCCCAATCAAAACAA 58.534 36.000 0.00 0.00 0.00 2.83
836 838 2.939103 CCCGCCTATAATAAGCATGCTC 59.061 50.000 22.93 3.76 0.00 4.26
837 839 2.941415 GCCCGCCTATAATAAGCATGCT 60.941 50.000 16.30 16.30 0.00 3.79
838 840 1.401905 GCCCGCCTATAATAAGCATGC 59.598 52.381 10.51 10.51 0.00 4.06
839 841 1.665679 CGCCCGCCTATAATAAGCATG 59.334 52.381 0.00 0.00 0.00 4.06
840 842 1.406887 CCGCCCGCCTATAATAAGCAT 60.407 52.381 0.00 0.00 0.00 3.79
841 843 0.036765 CCGCCCGCCTATAATAAGCA 60.037 55.000 0.00 0.00 0.00 3.91
842 844 0.248289 TCCGCCCGCCTATAATAAGC 59.752 55.000 0.00 0.00 0.00 3.09
843 845 1.822990 TCTCCGCCCGCCTATAATAAG 59.177 52.381 0.00 0.00 0.00 1.73
844 846 1.822990 CTCTCCGCCCGCCTATAATAA 59.177 52.381 0.00 0.00 0.00 1.40
865 867 2.550101 GGATGCAATGCCGCTCTCC 61.550 63.158 1.53 0.00 0.00 3.71
867 869 1.822613 CAGGATGCAATGCCGCTCT 60.823 57.895 1.53 0.00 33.77 4.09
868 870 1.378882 TTCAGGATGCAATGCCGCTC 61.379 55.000 1.53 0.00 33.77 5.03
869 871 0.966875 TTTCAGGATGCAATGCCGCT 60.967 50.000 1.53 0.00 33.77 5.52
870 872 0.108709 TTTTCAGGATGCAATGCCGC 60.109 50.000 1.53 0.00 33.77 6.53
871 873 2.264813 CTTTTTCAGGATGCAATGCCG 58.735 47.619 1.53 0.00 33.77 5.69
872 874 2.004733 GCTTTTTCAGGATGCAATGCC 58.995 47.619 1.53 0.00 33.77 4.40
873 875 2.928116 GAGCTTTTTCAGGATGCAATGC 59.072 45.455 0.00 0.00 34.76 3.56
874 876 4.182693 TGAGCTTTTTCAGGATGCAATG 57.817 40.909 0.00 0.00 34.76 2.82
875 877 4.382685 CCATGAGCTTTTTCAGGATGCAAT 60.383 41.667 0.00 0.00 34.76 3.56
917 919 2.187424 CTCTCTGCCTGCCTGCTC 59.813 66.667 0.00 0.00 0.00 4.26
918 920 2.284478 TCTCTCTGCCTGCCTGCT 60.284 61.111 0.00 0.00 0.00 4.24
919 921 2.125188 GTCTCTCTGCCTGCCTGC 60.125 66.667 0.00 0.00 0.00 4.85
920 922 1.315981 TACGTCTCTCTGCCTGCCTG 61.316 60.000 0.00 0.00 0.00 4.85
931 933 2.159282 CGCCATTGTTACCTACGTCTCT 60.159 50.000 0.00 0.00 0.00 3.10
932 934 2.190981 CGCCATTGTTACCTACGTCTC 58.809 52.381 0.00 0.00 0.00 3.36
955 957 4.760047 ATGTGAGGTCGCCACGCC 62.760 66.667 4.92 0.00 37.34 5.68
956 958 3.188786 GATGTGAGGTCGCCACGC 61.189 66.667 0.00 0.12 37.34 5.34
957 959 1.517257 GAGATGTGAGGTCGCCACG 60.517 63.158 0.00 0.00 37.34 4.94
958 960 1.103803 TAGAGATGTGAGGTCGCCAC 58.896 55.000 0.00 0.00 35.23 5.01
984 986 1.517242 CTTGAGCTTGTCCTGTCCAC 58.483 55.000 0.00 0.00 0.00 4.02
1000 1002 3.480133 CTCCCGGCCCCTACCTTG 61.480 72.222 0.00 0.00 0.00 3.61
1022 1024 1.228063 CATGCCCGCCTTGCTATCT 60.228 57.895 0.00 0.00 0.00 1.98
1024 1026 2.908940 GCATGCCCGCCTTGCTAT 60.909 61.111 6.36 0.00 40.42 2.97
1025 1027 4.423112 TGCATGCCCGCCTTGCTA 62.423 61.111 16.68 0.00 43.09 3.49
1029 1031 4.992740 TTGGTGCATGCCCGCCTT 62.993 61.111 16.68 0.00 36.35 4.35
1030 1032 4.992740 TTTGGTGCATGCCCGCCT 62.993 61.111 16.68 0.00 36.35 5.52
1031 1033 4.001226 TTTTGGTGCATGCCCGCC 62.001 61.111 16.68 15.04 35.93 6.13
1032 1034 2.738139 GTTTTGGTGCATGCCCGC 60.738 61.111 16.68 5.31 0.00 6.13
1033 1035 0.531532 TTTGTTTTGGTGCATGCCCG 60.532 50.000 16.68 0.00 0.00 6.13
1034 1036 1.894881 ATTTGTTTTGGTGCATGCCC 58.105 45.000 16.68 16.23 0.00 5.36
1035 1037 3.986442 AAATTTGTTTTGGTGCATGCC 57.014 38.095 16.68 6.42 0.00 4.40
1036 1038 5.415415 TGTAAATTTGTTTTGGTGCATGC 57.585 34.783 11.82 11.82 0.00 4.06
1040 1042 6.429791 ACCTTTGTAAATTTGTTTTGGTGC 57.570 33.333 0.00 0.00 0.00 5.01
1041 1043 6.531948 TCGACCTTTGTAAATTTGTTTTGGTG 59.468 34.615 0.00 0.95 0.00 4.17
1043 1045 7.436673 TGATCGACCTTTGTAAATTTGTTTTGG 59.563 33.333 0.00 0.79 0.00 3.28
1110 1135 4.885270 CCACCGCCACCACCACAA 62.885 66.667 0.00 0.00 0.00 3.33
1362 1387 1.656818 CGCCAAAAGATCCGGCATGT 61.657 55.000 0.00 0.00 46.60 3.21
1403 1434 2.432628 CTCGAACGTGGACAGGGC 60.433 66.667 0.00 0.00 0.00 5.19
1447 1478 1.095228 GGTACATGCCCACGTCCATG 61.095 60.000 15.14 15.14 43.34 3.66
1492 1523 4.838152 ATGCTGTAGGCCACCGCG 62.838 66.667 5.01 0.00 40.02 6.46
1503 1534 3.259314 TGTCCAGGGCCATGCTGT 61.259 61.111 13.13 0.00 0.00 4.40
1584 1615 2.590575 CGTTGGCGTTGGTCCTGT 60.591 61.111 0.00 0.00 0.00 4.00
1585 1616 4.025401 GCGTTGGCGTTGGTCCTG 62.025 66.667 0.00 0.00 40.81 3.86
1588 1619 3.536498 CTTGGCGTTGGCGTTGGTC 62.536 63.158 0.00 0.00 41.24 4.02
1589 1620 3.591835 CTTGGCGTTGGCGTTGGT 61.592 61.111 0.00 0.00 41.24 3.67
1590 1621 3.283684 TCTTGGCGTTGGCGTTGG 61.284 61.111 0.00 0.00 41.24 3.77
1798 1829 4.514577 AAGATGCCGCGGGTCTCG 62.515 66.667 29.38 0.00 42.76 4.04
1799 1830 2.586357 GAAGATGCCGCGGGTCTC 60.586 66.667 29.38 10.81 0.00 3.36
1885 1916 1.216710 GGACTCGAAGGTGGAGCAG 59.783 63.158 0.00 0.00 34.87 4.24
1968 1999 2.980213 GAAGCTCTTCCCGGCGATCC 62.980 65.000 9.30 0.00 33.64 3.36
2107 2138 0.109458 TCTGCACGTACACGATGTCC 60.109 55.000 9.04 0.00 43.02 4.02
2157 2188 3.708734 GCCCGTTGACGAACACGG 61.709 66.667 14.46 14.46 43.02 4.94
2161 2192 4.072088 CGCTGCCCGTTGACGAAC 62.072 66.667 4.91 0.00 43.02 3.95
2194 2225 1.445582 GCGGTAGTTCCACACCTCG 60.446 63.158 0.00 0.00 35.57 4.63
2213 2244 2.746277 GTTGAGCCCGCCGTTGAT 60.746 61.111 0.00 0.00 0.00 2.57
2515 2546 2.535317 AGGATGTTGGGCCCCACT 60.535 61.111 25.49 12.01 30.78 4.00
2517 2548 3.671410 CCAGGATGTTGGGCCCCA 61.671 66.667 22.27 11.97 34.46 4.96
2626 2657 3.582998 TTGGCATTAGGAGGAGGAATG 57.417 47.619 0.00 0.00 34.37 2.67
2630 2661 1.074566 GGGATTGGCATTAGGAGGAGG 59.925 57.143 0.00 0.00 0.00 4.30
2644 2675 1.949799 TGGGATTGGGTTTGGGATTG 58.050 50.000 0.00 0.00 0.00 2.67
2742 2788 7.101700 TGAGAGGTGAATGATATGATACATGC 58.898 38.462 0.00 0.00 0.00 4.06
2791 2849 6.254281 TGGATTCAGAAAAGATTCGGTTTC 57.746 37.500 7.43 7.43 40.63 2.78
2905 2963 0.563672 ATGACTAGGGGGAGGACCTC 59.436 60.000 13.60 13.60 41.56 3.85
2915 2973 5.696270 GGTTTTTCTTTTTGCATGACTAGGG 59.304 40.000 0.00 0.00 0.00 3.53
2922 2980 3.549873 ACGTCGGTTTTTCTTTTTGCATG 59.450 39.130 0.00 0.00 0.00 4.06
2932 2993 1.991264 GGAGCTAGACGTCGGTTTTTC 59.009 52.381 10.46 4.77 0.00 2.29
2991 3052 1.250328 TGTGTGTGGTCGTAGGTAGG 58.750 55.000 0.00 0.00 0.00 3.18
3005 3066 5.527214 TCTTTTTGACCTAGTCACATGTGTG 59.473 40.000 24.63 13.22 42.60 3.82
3024 3085 6.342906 TCGTTGACATATTCCGGTATCTTTT 58.657 36.000 0.00 0.00 0.00 2.27
3038 3099 6.912203 TTGTTGTTCTTTCTCGTTGACATA 57.088 33.333 0.00 0.00 0.00 2.29
3064 3127 0.689055 GGTCTCCTTGTTACCGGGTT 59.311 55.000 4.31 0.00 0.00 4.11
3065 3128 2.369654 GGTCTCCTTGTTACCGGGT 58.630 57.895 6.32 4.46 0.00 5.28
3161 3224 6.446909 TGTGGTTATCATATGCTATTCCCA 57.553 37.500 0.00 0.00 0.00 4.37
3233 3350 0.747852 TGATCAATAGCGGCACCGTA 59.252 50.000 11.27 2.64 42.09 4.02
3239 3356 2.543848 TCGTTCAATGATCAATAGCGGC 59.456 45.455 0.00 0.00 0.00 6.53
3264 3381 4.903638 ACATAGACATGAACGAAACACG 57.096 40.909 0.00 0.00 40.63 4.49
3307 3425 4.272504 GTCATCAAATCGCGAATCCCTTTA 59.727 41.667 15.24 0.00 0.00 1.85
3318 3441 5.065218 ACTCCAATAACAGTCATCAAATCGC 59.935 40.000 0.00 0.00 0.00 4.58
3420 3544 1.475280 CCTGAAACTCGTCCGGTATCA 59.525 52.381 0.00 0.00 0.00 2.15
3430 3554 1.435577 CCGGTAAACCCTGAAACTCG 58.564 55.000 0.00 0.00 0.00 4.18
3438 3562 1.762370 CGGTATTACCCGGTAAACCCT 59.238 52.381 22.75 9.80 44.32 4.34
3596 3746 0.798776 GTCTATGGCGCCACATATGC 59.201 55.000 35.50 16.26 33.22 3.14
3687 3839 3.916359 TGGGCTTGTTGGATTCGTATA 57.084 42.857 0.00 0.00 0.00 1.47
3709 3874 9.796120 TTCGTACAAACTCAGAATTTGAAATTT 57.204 25.926 11.27 0.00 39.01 1.82
3713 3878 7.310072 TGTTCGTACAAACTCAGAATTTGAA 57.690 32.000 11.27 0.00 39.01 2.69
3718 3883 5.696724 CCTCTTGTTCGTACAAACTCAGAAT 59.303 40.000 8.99 0.00 43.33 2.40
3732 3897 2.391389 GCCGCCTTCCTCTTGTTCG 61.391 63.158 0.00 0.00 0.00 3.95
3736 3901 0.967380 AATTGGCCGCCTTCCTCTTG 60.967 55.000 11.61 0.00 0.00 3.02
3739 3904 0.738975 GTAAATTGGCCGCCTTCCTC 59.261 55.000 11.61 0.00 0.00 3.71
3740 3905 0.683179 GGTAAATTGGCCGCCTTCCT 60.683 55.000 11.61 0.00 0.00 3.36
3741 3906 0.968393 TGGTAAATTGGCCGCCTTCC 60.968 55.000 11.61 4.81 0.00 3.46
3742 3907 0.892063 TTGGTAAATTGGCCGCCTTC 59.108 50.000 11.61 0.00 0.00 3.46
3763 3928 6.058827 GTCGACTAAGACTTAGACATACCC 57.941 45.833 25.65 5.94 38.09 3.69
3770 3935 6.040209 AGTCTCAGTCGACTAAGACTTAGA 57.960 41.667 35.84 18.66 46.73 2.10
3775 3940 4.453136 AGTGAAGTCTCAGTCGACTAAGAC 59.547 45.833 33.03 33.03 43.14 3.01
3776 3941 4.643463 AGTGAAGTCTCAGTCGACTAAGA 58.357 43.478 19.57 17.01 43.14 2.10
3777 3942 6.092944 ACATAGTGAAGTCTCAGTCGACTAAG 59.907 42.308 19.57 14.47 43.14 2.18
3778 3943 5.938710 ACATAGTGAAGTCTCAGTCGACTAA 59.061 40.000 19.57 1.94 43.14 2.24
3779 3944 5.489249 ACATAGTGAAGTCTCAGTCGACTA 58.511 41.667 19.57 0.00 43.14 2.59
3780 3945 4.328536 ACATAGTGAAGTCTCAGTCGACT 58.671 43.478 13.58 13.58 45.73 4.18
3781 3946 4.393680 AGACATAGTGAAGTCTCAGTCGAC 59.606 45.833 7.70 7.70 40.96 4.20
3782 3947 4.580868 AGACATAGTGAAGTCTCAGTCGA 58.419 43.478 0.00 0.00 40.96 4.20
3783 3948 4.955925 AGACATAGTGAAGTCTCAGTCG 57.044 45.455 0.00 0.00 40.96 4.18
3790 3955 4.948608 TCGACTGAGACATAGTGAAGTC 57.051 45.455 0.00 0.00 35.02 3.01
3791 3956 5.416013 TCATTCGACTGAGACATAGTGAAGT 59.584 40.000 0.65 0.00 0.00 3.01
3792 3957 5.741510 GTCATTCGACTGAGACATAGTGAAG 59.258 44.000 5.61 0.00 39.22 3.02
3793 3958 5.641709 GTCATTCGACTGAGACATAGTGAA 58.358 41.667 5.61 0.00 39.22 3.18
3794 3959 4.201822 CGTCATTCGACTGAGACATAGTGA 60.202 45.833 5.61 0.00 42.86 3.41
3795 3960 4.031691 CGTCATTCGACTGAGACATAGTG 58.968 47.826 5.61 0.00 42.86 2.74
3796 3961 3.690139 ACGTCATTCGACTGAGACATAGT 59.310 43.478 5.61 0.00 42.86 2.12
3797 3962 4.201822 TGACGTCATTCGACTGAGACATAG 60.202 45.833 15.76 0.00 42.86 2.23
3798 3963 3.687698 TGACGTCATTCGACTGAGACATA 59.312 43.478 15.76 0.00 42.86 2.29
3799 3964 2.488153 TGACGTCATTCGACTGAGACAT 59.512 45.455 15.76 0.00 42.86 3.06
3800 3965 1.877443 TGACGTCATTCGACTGAGACA 59.123 47.619 15.76 4.38 42.86 3.41
3801 3966 2.613730 TGACGTCATTCGACTGAGAC 57.386 50.000 15.76 1.03 42.86 3.36
3802 3967 3.010420 AGATGACGTCATTCGACTGAGA 58.990 45.455 30.46 0.00 42.86 3.27
3803 3968 3.412981 AGATGACGTCATTCGACTGAG 57.587 47.619 30.46 3.60 42.86 3.35
3804 3969 3.057526 ACAAGATGACGTCATTCGACTGA 60.058 43.478 30.46 0.65 42.86 3.41
3805 3970 3.245797 ACAAGATGACGTCATTCGACTG 58.754 45.455 30.46 22.54 42.86 3.51
3806 3971 3.577649 ACAAGATGACGTCATTCGACT 57.422 42.857 30.46 20.02 42.86 4.18
3807 3972 3.237660 CGTACAAGATGACGTCATTCGAC 59.762 47.826 30.46 21.03 42.86 4.20
3808 3973 3.422655 CGTACAAGATGACGTCATTCGA 58.577 45.455 30.46 12.85 42.86 3.71
3809 3974 3.800751 CGTACAAGATGACGTCATTCG 57.199 47.619 30.46 22.52 46.00 3.34
3816 3981 3.066342 AGGACCATACGTACAAGATGACG 59.934 47.826 0.00 0.00 44.57 4.35
3817 3982 4.142227 ACAGGACCATACGTACAAGATGAC 60.142 45.833 0.00 0.00 0.00 3.06
3818 3983 4.021229 ACAGGACCATACGTACAAGATGA 58.979 43.478 0.00 0.00 0.00 2.92
3819 3984 4.386867 ACAGGACCATACGTACAAGATG 57.613 45.455 0.00 0.00 0.00 2.90
3820 3985 5.046878 TCAAACAGGACCATACGTACAAGAT 60.047 40.000 0.00 0.00 0.00 2.40
3821 3986 4.281435 TCAAACAGGACCATACGTACAAGA 59.719 41.667 0.00 0.00 0.00 3.02
3822 3987 4.562082 TCAAACAGGACCATACGTACAAG 58.438 43.478 0.00 0.00 0.00 3.16
3823 3988 4.603989 TCAAACAGGACCATACGTACAA 57.396 40.909 0.00 0.00 0.00 2.41
3824 3989 4.675933 CGATCAAACAGGACCATACGTACA 60.676 45.833 0.00 0.00 0.00 2.90
3825 3990 3.795101 CGATCAAACAGGACCATACGTAC 59.205 47.826 0.00 0.00 0.00 3.67
3826 3991 3.444742 ACGATCAAACAGGACCATACGTA 59.555 43.478 0.00 0.00 0.00 3.57
3827 3992 2.232941 ACGATCAAACAGGACCATACGT 59.767 45.455 0.00 0.00 0.00 3.57
3828 3993 2.888594 ACGATCAAACAGGACCATACG 58.111 47.619 0.00 0.00 0.00 3.06
3829 3994 5.007385 ACTACGATCAAACAGGACCATAC 57.993 43.478 0.00 0.00 0.00 2.39
3830 3995 5.670792 AACTACGATCAAACAGGACCATA 57.329 39.130 0.00 0.00 0.00 2.74
3831 3996 4.553330 AACTACGATCAAACAGGACCAT 57.447 40.909 0.00 0.00 0.00 3.55
3832 3997 4.039973 AGAAACTACGATCAAACAGGACCA 59.960 41.667 0.00 0.00 0.00 4.02
3833 3998 4.389077 CAGAAACTACGATCAAACAGGACC 59.611 45.833 0.00 0.00 0.00 4.46
3834 3999 5.227908 TCAGAAACTACGATCAAACAGGAC 58.772 41.667 0.00 0.00 0.00 3.85
3835 4000 5.462530 TCAGAAACTACGATCAAACAGGA 57.537 39.130 0.00 0.00 0.00 3.86
3836 4001 5.004821 CGATCAGAAACTACGATCAAACAGG 59.995 44.000 0.00 0.00 36.20 4.00
3837 4002 5.499334 GCGATCAGAAACTACGATCAAACAG 60.499 44.000 0.00 0.00 36.20 3.16
3838 4003 4.326278 GCGATCAGAAACTACGATCAAACA 59.674 41.667 0.00 0.00 36.20 2.83
3839 4004 4.563184 AGCGATCAGAAACTACGATCAAAC 59.437 41.667 0.00 0.00 36.20 2.93
3840 4005 4.562789 CAGCGATCAGAAACTACGATCAAA 59.437 41.667 0.00 0.00 36.20 2.69
3841 4006 4.105486 CAGCGATCAGAAACTACGATCAA 58.895 43.478 0.00 0.00 36.20 2.57
3842 4007 3.489229 CCAGCGATCAGAAACTACGATCA 60.489 47.826 0.00 0.00 36.20 2.92
3843 4008 3.046390 CCAGCGATCAGAAACTACGATC 58.954 50.000 0.00 0.00 33.66 3.69
3844 4009 2.799917 GCCAGCGATCAGAAACTACGAT 60.800 50.000 0.00 0.00 0.00 3.73
3845 4010 1.469251 GCCAGCGATCAGAAACTACGA 60.469 52.381 0.00 0.00 0.00 3.43
3846 4011 0.924090 GCCAGCGATCAGAAACTACG 59.076 55.000 0.00 0.00 0.00 3.51
3847 4012 2.301577 AGCCAGCGATCAGAAACTAC 57.698 50.000 0.00 0.00 0.00 2.73
3848 4013 4.099419 TCATAAGCCAGCGATCAGAAACTA 59.901 41.667 0.00 0.00 0.00 2.24
3849 4014 3.118629 TCATAAGCCAGCGATCAGAAACT 60.119 43.478 0.00 0.00 0.00 2.66
3850 4015 3.198068 TCATAAGCCAGCGATCAGAAAC 58.802 45.455 0.00 0.00 0.00 2.78
3851 4016 3.541996 TCATAAGCCAGCGATCAGAAA 57.458 42.857 0.00 0.00 0.00 2.52
3852 4017 3.181462 ACATCATAAGCCAGCGATCAGAA 60.181 43.478 0.00 0.00 0.00 3.02
3853 4018 2.366590 ACATCATAAGCCAGCGATCAGA 59.633 45.455 0.00 0.00 0.00 3.27
3854 4019 2.763933 ACATCATAAGCCAGCGATCAG 58.236 47.619 0.00 0.00 0.00 2.90
3855 4020 2.916702 ACATCATAAGCCAGCGATCA 57.083 45.000 0.00 0.00 0.00 2.92
3856 4021 3.851105 GCAAACATCATAAGCCAGCGATC 60.851 47.826 0.00 0.00 0.00 3.69
3857 4022 2.033801 GCAAACATCATAAGCCAGCGAT 59.966 45.455 0.00 0.00 0.00 4.58
3858 4023 1.401552 GCAAACATCATAAGCCAGCGA 59.598 47.619 0.00 0.00 0.00 4.93
3859 4024 1.402968 AGCAAACATCATAAGCCAGCG 59.597 47.619 0.00 0.00 0.00 5.18
3860 4025 3.184541 CAAGCAAACATCATAAGCCAGC 58.815 45.455 0.00 0.00 0.00 4.85
3861 4026 4.445452 ACAAGCAAACATCATAAGCCAG 57.555 40.909 0.00 0.00 0.00 4.85
3862 4027 4.558178 CAACAAGCAAACATCATAAGCCA 58.442 39.130 0.00 0.00 0.00 4.75
3863 4028 3.928375 CCAACAAGCAAACATCATAAGCC 59.072 43.478 0.00 0.00 0.00 4.35
3864 4029 3.928375 CCCAACAAGCAAACATCATAAGC 59.072 43.478 0.00 0.00 0.00 3.09
3865 4030 3.928375 GCCCAACAAGCAAACATCATAAG 59.072 43.478 0.00 0.00 0.00 1.73
3866 4031 3.577848 AGCCCAACAAGCAAACATCATAA 59.422 39.130 0.00 0.00 0.00 1.90
3867 4032 3.164268 AGCCCAACAAGCAAACATCATA 58.836 40.909 0.00 0.00 0.00 2.15
3868 4033 1.972795 AGCCCAACAAGCAAACATCAT 59.027 42.857 0.00 0.00 0.00 2.45
3869 4034 1.412079 AGCCCAACAAGCAAACATCA 58.588 45.000 0.00 0.00 0.00 3.07
3870 4035 2.137523 CAAGCCCAACAAGCAAACATC 58.862 47.619 0.00 0.00 0.00 3.06
3871 4036 1.811176 GCAAGCCCAACAAGCAAACAT 60.811 47.619 0.00 0.00 0.00 2.71
3872 4037 0.461693 GCAAGCCCAACAAGCAAACA 60.462 50.000 0.00 0.00 0.00 2.83
3873 4038 0.179076 AGCAAGCCCAACAAGCAAAC 60.179 50.000 0.00 0.00 0.00 2.93
3874 4039 0.540923 AAGCAAGCCCAACAAGCAAA 59.459 45.000 0.00 0.00 0.00 3.68
3875 4040 0.179078 CAAGCAAGCCCAACAAGCAA 60.179 50.000 0.00 0.00 0.00 3.91
3876 4041 1.329171 ACAAGCAAGCCCAACAAGCA 61.329 50.000 0.00 0.00 0.00 3.91
3877 4042 0.877213 CACAAGCAAGCCCAACAAGC 60.877 55.000 0.00 0.00 0.00 4.01
3878 4043 0.249573 CCACAAGCAAGCCCAACAAG 60.250 55.000 0.00 0.00 0.00 3.16
3879 4044 1.684386 CCCACAAGCAAGCCCAACAA 61.684 55.000 0.00 0.00 0.00 2.83
3880 4045 2.132996 CCCACAAGCAAGCCCAACA 61.133 57.895 0.00 0.00 0.00 3.33
3881 4046 2.736531 CCCACAAGCAAGCCCAAC 59.263 61.111 0.00 0.00 0.00 3.77
3882 4047 3.233231 GCCCACAAGCAAGCCCAA 61.233 61.111 0.00 0.00 0.00 4.12
3883 4048 4.223125 AGCCCACAAGCAAGCCCA 62.223 61.111 0.00 0.00 34.23 5.36
3884 4049 3.376918 GAGCCCACAAGCAAGCCC 61.377 66.667 0.00 0.00 34.23 5.19
3885 4050 3.741476 CGAGCCCACAAGCAAGCC 61.741 66.667 0.00 0.00 34.23 4.35
3886 4051 3.741476 CCGAGCCCACAAGCAAGC 61.741 66.667 0.00 0.00 34.23 4.01
3887 4052 2.281761 ACCGAGCCCACAAGCAAG 60.282 61.111 0.00 0.00 34.23 4.01
3888 4053 2.594303 CACCGAGCCCACAAGCAA 60.594 61.111 0.00 0.00 34.23 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.