Multiple sequence alignment - TraesCS1A01G444500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G444500 chr1A 100.000 6450 0 0 1 6450 592534364 592527915 0.000000e+00 11912.0
1 TraesCS1A01G444500 chr1A 96.956 657 8 2 5805 6450 592523079 592522424 0.000000e+00 1092.0
2 TraesCS1A01G444500 chr1A 78.316 392 53 29 5148 5518 592558657 592559037 2.340000e-54 224.0
3 TraesCS1A01G444500 chr1A 84.375 96 11 4 4986 5079 99868409 99868316 2.480000e-14 91.6
4 TraesCS1A01G444500 chr1A 82.143 84 13 2 431 513 323181150 323181232 3.230000e-08 71.3
5 TraesCS1A01G444500 chr1B 93.538 3219 118 27 604 3760 687281396 687278206 0.000000e+00 4710.0
6 TraesCS1A01G444500 chr1B 89.309 767 36 18 4858 5616 687276895 687276167 0.000000e+00 920.0
7 TraesCS1A01G444500 chr1B 89.561 661 39 16 5805 6450 387339991 387340636 0.000000e+00 811.0
8 TraesCS1A01G444500 chr1B 88.956 661 45 14 5805 6450 174376486 174375839 0.000000e+00 791.0
9 TraesCS1A01G444500 chr1B 72.345 2354 476 138 1466 3752 222207576 222209821 4.340000e-161 579.0
10 TraesCS1A01G444500 chr1B 79.135 393 35 22 4473 4844 687277395 687277029 1.810000e-55 228.0
11 TraesCS1A01G444500 chr1B 86.802 197 19 4 62 256 687281742 687281551 5.070000e-51 213.0
12 TraesCS1A01G444500 chr1B 81.126 302 15 16 4053 4318 687277946 687277651 3.050000e-48 204.0
13 TraesCS1A01G444500 chr1B 81.034 116 14 5 5016 5130 169696809 169696917 1.150000e-12 86.1
14 TraesCS1A01G444500 chr1D 93.960 3096 96 17 726 3768 494014550 494011493 0.000000e+00 4597.0
15 TraesCS1A01G444500 chr1D 85.207 1210 97 46 4473 5647 494010904 494009742 0.000000e+00 1168.0
16 TraesCS1A01G444500 chr1D 83.083 266 14 14 5258 5518 494040323 494040562 5.070000e-51 213.0
17 TraesCS1A01G444500 chr1D 77.871 357 53 22 76 423 494014992 494014653 1.420000e-46 198.0
18 TraesCS1A01G444500 chr1D 89.744 156 7 7 4161 4314 494011247 494011099 2.370000e-44 191.0
19 TraesCS1A01G444500 chr1D 90.083 121 8 2 5648 5764 494009698 494009578 3.110000e-33 154.0
20 TraesCS1A01G444500 chr1D 89.362 94 3 3 614 704 494014635 494014546 1.900000e-20 111.0
21 TraesCS1A01G444500 chr1D 97.500 40 1 0 5015 5054 13031620 13031659 1.160000e-07 69.4
22 TraesCS1A01G444500 chr1D 100.000 36 0 0 5767 5802 494009556 494009521 4.170000e-07 67.6
23 TraesCS1A01G444500 chr7B 93.333 600 25 5 5802 6388 279082205 279081608 0.000000e+00 872.0
24 TraesCS1A01G444500 chr7B 88.554 664 45 14 5805 6450 471876756 471876106 0.000000e+00 776.0
25 TraesCS1A01G444500 chr7B 89.203 602 37 16 5805 6388 183550985 183551576 0.000000e+00 726.0
26 TraesCS1A01G444500 chr7B 89.189 74 5 3 442 513 77429449 77429521 8.910000e-14 89.8
27 TraesCS1A01G444500 chr7B 83.562 73 11 1 436 508 689967365 689967436 4.170000e-07 67.6
28 TraesCS1A01G444500 chr6A 90.152 660 36 15 5805 6450 466125552 466124908 0.000000e+00 832.0
29 TraesCS1A01G444500 chr6A 89.818 658 41 12 5805 6450 466119831 466119188 0.000000e+00 821.0
30 TraesCS1A01G444500 chr6A 94.286 70 4 0 442 511 37856760 37856829 2.460000e-19 108.0
31 TraesCS1A01G444500 chr4B 89.107 661 43 15 5805 6450 326698691 326698045 0.000000e+00 795.0
32 TraesCS1A01G444500 chr4B 72.593 2160 422 133 1654 3743 94212930 94210871 2.630000e-153 553.0
33 TraesCS1A01G444500 chr4B 88.119 101 12 0 4980 5080 489088139 489088039 3.160000e-23 121.0
34 TraesCS1A01G444500 chr4B 87.255 102 9 4 4981 5080 94208702 94208603 5.290000e-21 113.0
35 TraesCS1A01G444500 chr4B 92.157 51 3 1 5010 5059 119822936 119822886 3.230000e-08 71.3
36 TraesCS1A01G444500 chr4B 90.566 53 5 0 5012 5064 495584330 495584278 3.230000e-08 71.3
37 TraesCS1A01G444500 chr5B 88.235 663 48 13 5804 6450 563446213 563445565 0.000000e+00 765.0
38 TraesCS1A01G444500 chr5B 88.576 604 40 17 5804 6388 284036132 284036725 0.000000e+00 706.0
39 TraesCS1A01G444500 chr6B 90.034 582 38 7 5886 6450 166713173 166712595 0.000000e+00 736.0
40 TraesCS1A01G444500 chr6B 88.625 589 48 6 5804 6377 72299304 72299888 0.000000e+00 699.0
41 TraesCS1A01G444500 chr6B 90.055 543 35 8 5805 6332 72305500 72306038 0.000000e+00 686.0
42 TraesCS1A01G444500 chr2A 88.538 602 41 12 5805 6388 426634378 426634969 0.000000e+00 704.0
43 TraesCS1A01G444500 chr2A 76.027 292 60 8 2667 2950 8050073 8049784 6.740000e-30 143.0
44 TraesCS1A01G444500 chr2A 75.685 292 45 19 3334 3618 68880481 68880753 8.780000e-24 122.0
45 TraesCS1A01G444500 chr2A 80.576 139 19 4 442 572 48406668 48406530 4.110000e-17 100.0
46 TraesCS1A01G444500 chr2A 100.000 28 0 0 2536 2563 262573821 262573848 1.200000e-02 52.8
47 TraesCS1A01G444500 chr2B 86.026 687 45 21 5802 6450 419220909 419220236 0.000000e+00 689.0
48 TraesCS1A01G444500 chr2B 92.308 78 6 0 3541 3618 105539957 105540034 1.900000e-20 111.0
49 TraesCS1A01G444500 chr4A 72.479 2420 495 135 1398 3752 532792432 532794745 7.100000e-174 621.0
50 TraesCS1A01G444500 chr4A 80.814 172 19 8 4980 5146 54107187 54107025 8.780000e-24 122.0
51 TraesCS1A01G444500 chr4A 88.119 101 12 0 4980 5080 532796841 532796941 3.160000e-23 121.0
52 TraesCS1A01G444500 chr4A 87.500 80 9 1 434 512 628513238 628513317 2.480000e-14 91.6
53 TraesCS1A01G444500 chr4D 72.744 2139 437 117 1654 3743 63589636 63587595 2.590000e-163 586.0
54 TraesCS1A01G444500 chr4D 81.977 172 17 8 4980 5146 397094315 397094153 4.060000e-27 134.0
55 TraesCS1A01G444500 chr4D 88.235 102 8 4 4981 5080 63585450 63585351 1.140000e-22 119.0
56 TraesCS1A01G444500 chr4D 90.566 53 5 0 5012 5064 401077079 401077027 3.230000e-08 71.3
57 TraesCS1A01G444500 chr4D 90.196 51 4 1 5010 5059 84545742 84545692 1.500000e-06 65.8
58 TraesCS1A01G444500 chr3A 88.581 289 11 7 5793 6066 387879181 387878900 1.340000e-86 331.0
59 TraesCS1A01G444500 chr3A 78.767 146 20 2 438 572 724521185 724521040 3.200000e-13 87.9
60 TraesCS1A01G444500 chr6D 81.567 217 36 2 2696 2911 121298432 121298645 6.650000e-40 176.0
61 TraesCS1A01G444500 chr6D 78.431 204 22 9 428 611 388209737 388209938 5.290000e-21 113.0
62 TraesCS1A01G444500 chr6D 89.655 58 6 0 5015 5072 10513487 10513430 2.490000e-09 75.0
63 TraesCS1A01G444500 chr7D 70.276 942 233 42 1411 2324 618486616 618487538 1.870000e-30 145.0
64 TraesCS1A01G444500 chr7D 89.899 99 10 0 4983 5081 618489479 618489577 1.890000e-25 128.0
65 TraesCS1A01G444500 chr7D 86.486 111 10 3 447 553 61031999 61031890 4.090000e-22 117.0
66 TraesCS1A01G444500 chr7D 83.333 84 14 0 4984 5067 382523912 382523829 1.930000e-10 78.7
67 TraesCS1A01G444500 chr7A 87.736 106 11 2 4978 5081 712180948 712181053 8.780000e-24 122.0
68 TraesCS1A01G444500 chr2D 91.026 78 7 0 3541 3618 65690500 65690423 8.840000e-19 106.0
69 TraesCS1A01G444500 chr2D 76.961 204 25 12 428 612 190024143 190023943 5.320000e-16 97.1
70 TraesCS1A01G444500 chr5D 83.761 117 9 9 4986 5100 11950020 11949912 1.140000e-17 102.0
71 TraesCS1A01G444500 chr5D 85.915 71 9 1 5010 5079 502596534 502596604 2.490000e-09 75.0
72 TraesCS1A01G444500 chr5D 91.667 48 4 0 438 485 543239940 543239987 4.170000e-07 67.6
73 TraesCS1A01G444500 chrUn 91.379 58 5 0 440 497 31728125 31728182 5.360000e-11 80.5
74 TraesCS1A01G444500 chrUn 78.632 117 17 6 425 539 87884225 87884115 3.230000e-08 71.3
75 TraesCS1A01G444500 chrUn 93.478 46 3 0 440 485 478665135 478665180 1.160000e-07 69.4
76 TraesCS1A01G444500 chrUn 90.698 43 2 2 5016 5057 37382163 37382122 1.000000e-03 56.5
77 TraesCS1A01G444500 chr3D 89.286 56 5 1 5010 5064 48365685 48365630 1.160000e-07 69.4
78 TraesCS1A01G444500 chr3D 83.117 77 12 1 438 513 82752009 82752085 1.160000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G444500 chr1A 592527915 592534364 6449 True 11912.000000 11912 100.0000 1 6450 1 chr1A.!!$R3 6449
1 TraesCS1A01G444500 chr1A 592522424 592523079 655 True 1092.000000 1092 96.9560 5805 6450 1 chr1A.!!$R2 645
2 TraesCS1A01G444500 chr1B 687276167 687281742 5575 True 1255.000000 4710 85.9820 62 5616 5 chr1B.!!$R2 5554
3 TraesCS1A01G444500 chr1B 387339991 387340636 645 False 811.000000 811 89.5610 5805 6450 1 chr1B.!!$F3 645
4 TraesCS1A01G444500 chr1B 174375839 174376486 647 True 791.000000 791 88.9560 5805 6450 1 chr1B.!!$R1 645
5 TraesCS1A01G444500 chr1B 222207576 222209821 2245 False 579.000000 579 72.3450 1466 3752 1 chr1B.!!$F2 2286
6 TraesCS1A01G444500 chr1D 494009521 494014992 5471 True 926.657143 4597 89.4610 76 5802 7 chr1D.!!$R1 5726
7 TraesCS1A01G444500 chr7B 279081608 279082205 597 True 872.000000 872 93.3330 5802 6388 1 chr7B.!!$R1 586
8 TraesCS1A01G444500 chr7B 471876106 471876756 650 True 776.000000 776 88.5540 5805 6450 1 chr7B.!!$R2 645
9 TraesCS1A01G444500 chr7B 183550985 183551576 591 False 726.000000 726 89.2030 5805 6388 1 chr7B.!!$F2 583
10 TraesCS1A01G444500 chr6A 466124908 466125552 644 True 832.000000 832 90.1520 5805 6450 1 chr6A.!!$R2 645
11 TraesCS1A01G444500 chr6A 466119188 466119831 643 True 821.000000 821 89.8180 5805 6450 1 chr6A.!!$R1 645
12 TraesCS1A01G444500 chr4B 326698045 326698691 646 True 795.000000 795 89.1070 5805 6450 1 chr4B.!!$R2 645
13 TraesCS1A01G444500 chr4B 94208603 94212930 4327 True 333.000000 553 79.9240 1654 5080 2 chr4B.!!$R5 3426
14 TraesCS1A01G444500 chr5B 563445565 563446213 648 True 765.000000 765 88.2350 5804 6450 1 chr5B.!!$R1 646
15 TraesCS1A01G444500 chr5B 284036132 284036725 593 False 706.000000 706 88.5760 5804 6388 1 chr5B.!!$F1 584
16 TraesCS1A01G444500 chr6B 166712595 166713173 578 True 736.000000 736 90.0340 5886 6450 1 chr6B.!!$R1 564
17 TraesCS1A01G444500 chr6B 72299304 72299888 584 False 699.000000 699 88.6250 5804 6377 1 chr6B.!!$F1 573
18 TraesCS1A01G444500 chr6B 72305500 72306038 538 False 686.000000 686 90.0550 5805 6332 1 chr6B.!!$F2 527
19 TraesCS1A01G444500 chr2A 426634378 426634969 591 False 704.000000 704 88.5380 5805 6388 1 chr2A.!!$F3 583
20 TraesCS1A01G444500 chr2B 419220236 419220909 673 True 689.000000 689 86.0260 5802 6450 1 chr2B.!!$R1 648
21 TraesCS1A01G444500 chr4A 532792432 532796941 4509 False 371.000000 621 80.2990 1398 5080 2 chr4A.!!$F2 3682
22 TraesCS1A01G444500 chr4D 63585351 63589636 4285 True 352.500000 586 80.4895 1654 5080 2 chr4D.!!$R4 3426

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
846 898 0.458889 CGCCATTGCCATTTCCACAG 60.459 55.0 0.0 0.0 0.00 3.66 F
2413 2495 0.101399 CCATCTTCCAGAGGACGACG 59.899 60.0 0.0 0.0 32.86 5.12 F
3920 5835 1.021390 GCTGCTGCGTCCAATGTACT 61.021 55.0 0.0 0.0 0.00 2.73 F
4338 6664 0.032952 AGCGAGGCGAGTACAACAAA 59.967 50.0 0.0 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2820 2905 1.663702 CGACAGGTCGTTGTGGGAC 60.664 63.158 13.35 0.00 46.99 4.46 R
4071 6284 0.032678 CAACAGAGCCGAGTCACAGT 59.967 55.000 0.00 0.00 0.00 3.55 R
5338 7888 0.036010 GATGCATAGGTATGGCGCCT 60.036 55.000 29.70 15.76 40.00 5.52 R
5461 8011 0.251354 ATCACAGCTCCTGCGACATT 59.749 50.000 0.00 0.00 45.42 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.795970 GAGTTGCACTTTCTTTCTTCGA 57.204 40.909 0.00 0.00 0.00 3.71
22 23 5.156804 GAGTTGCACTTTCTTTCTTCGAA 57.843 39.130 0.00 0.00 0.00 3.71
23 24 5.162000 AGTTGCACTTTCTTTCTTCGAAG 57.838 39.130 19.35 19.35 0.00 3.79
24 25 4.035675 AGTTGCACTTTCTTTCTTCGAAGG 59.964 41.667 24.37 9.31 0.00 3.46
25 26 3.804036 TGCACTTTCTTTCTTCGAAGGA 58.196 40.909 24.37 14.37 0.00 3.36
26 27 4.196193 TGCACTTTCTTTCTTCGAAGGAA 58.804 39.130 24.37 21.09 0.00 3.36
27 28 4.638421 TGCACTTTCTTTCTTCGAAGGAAA 59.362 37.500 24.37 21.75 0.00 3.13
28 29 5.208503 GCACTTTCTTTCTTCGAAGGAAAG 58.791 41.667 31.92 31.92 46.28 2.62
52 53 5.428184 AAAAAGTGAACCCCATGTTTTCA 57.572 34.783 0.00 0.00 37.29 2.69
53 54 5.628797 AAAAGTGAACCCCATGTTTTCAT 57.371 34.783 4.68 0.00 41.78 2.57
54 55 5.628797 AAAGTGAACCCCATGTTTTCATT 57.371 34.783 4.68 0.00 38.64 2.57
55 56 4.605640 AGTGAACCCCATGTTTTCATTG 57.394 40.909 4.68 0.00 38.64 2.82
56 57 3.066380 GTGAACCCCATGTTTTCATTGC 58.934 45.455 4.68 0.00 38.64 3.56
57 58 2.971330 TGAACCCCATGTTTTCATTGCT 59.029 40.909 0.00 0.00 38.64 3.91
58 59 4.021544 GTGAACCCCATGTTTTCATTGCTA 60.022 41.667 4.68 0.00 38.64 3.49
59 60 4.220382 TGAACCCCATGTTTTCATTGCTAG 59.780 41.667 0.00 0.00 38.64 3.42
60 61 2.497273 ACCCCATGTTTTCATTGCTAGC 59.503 45.455 8.10 8.10 38.64 3.42
71 72 4.916983 TCATTGCTAGCACAGTTTTGTT 57.083 36.364 19.17 0.00 34.62 2.83
74 75 2.808244 TGCTAGCACAGTTTTGTTTGC 58.192 42.857 14.93 0.00 34.62 3.68
78 79 0.929615 GCACAGTTTTGTTTGCGCAT 59.070 45.000 12.75 0.00 34.62 4.73
91 92 4.569023 CGCATAGCTCCGCCACGA 62.569 66.667 0.00 0.00 0.00 4.35
104 105 3.827876 TCCGCCACGATTCAGGTATATAA 59.172 43.478 0.00 0.00 0.00 0.98
111 112 7.653713 GCCACGATTCAGGTATATAAGATATGG 59.346 40.741 0.00 0.00 0.00 2.74
205 206 7.147655 CCCTAGAAAAGATGTAAGATCTGGTGA 60.148 40.741 0.00 0.00 0.00 4.02
209 210 8.378565 AGAAAAGATGTAAGATCTGGTGAGAAA 58.621 33.333 0.00 0.00 0.00 2.52
243 244 7.818930 CACATATCCCACATTTGTTAGCTTTTT 59.181 33.333 0.00 0.00 0.00 1.94
265 266 3.230134 TGCTCCTTAAAGTTGTGCCAAT 58.770 40.909 0.00 0.00 0.00 3.16
270 271 6.292865 GCTCCTTAAAGTTGTGCCAATTTTTC 60.293 38.462 11.56 0.00 0.00 2.29
282 283 1.182385 AATTTTTCGGGGCGCTGGAA 61.182 50.000 7.64 4.16 0.00 3.53
286 287 1.591504 TTTCGGGGCGCTGGAATTTC 61.592 55.000 7.64 0.00 0.00 2.17
287 288 2.749839 CGGGGCGCTGGAATTTCA 60.750 61.111 7.64 0.00 0.00 2.69
288 289 2.120909 CGGGGCGCTGGAATTTCAT 61.121 57.895 7.64 0.00 0.00 2.57
307 311 0.762418 TCCAAGGACCATGTTGACGT 59.238 50.000 0.00 0.00 0.00 4.34
308 312 0.874390 CCAAGGACCATGTTGACGTG 59.126 55.000 0.00 0.00 0.00 4.49
309 313 1.542328 CCAAGGACCATGTTGACGTGA 60.542 52.381 0.00 0.00 34.90 4.35
310 314 1.531149 CAAGGACCATGTTGACGTGAC 59.469 52.381 0.00 0.00 34.90 3.67
317 321 2.029244 CCATGTTGACGTGACTAATCGC 59.971 50.000 0.00 0.00 34.90 4.58
318 322 2.717580 TGTTGACGTGACTAATCGCT 57.282 45.000 0.00 0.00 32.81 4.93
319 323 3.021269 TGTTGACGTGACTAATCGCTT 57.979 42.857 0.00 0.00 32.81 4.68
329 333 4.332819 GTGACTAATCGCTTGCCAAAGTAT 59.667 41.667 0.00 0.00 35.69 2.12
334 338 4.818534 ATCGCTTGCCAAAGTATATGTG 57.181 40.909 0.00 0.00 35.69 3.21
354 359 9.823647 ATATGTGTTTCAACCATGTTTACAAAA 57.176 25.926 0.00 0.00 0.00 2.44
355 360 7.588143 TGTGTTTCAACCATGTTTACAAAAG 57.412 32.000 0.00 0.00 0.00 2.27
356 361 7.378966 TGTGTTTCAACCATGTTTACAAAAGA 58.621 30.769 0.00 0.00 0.00 2.52
357 362 7.872993 TGTGTTTCAACCATGTTTACAAAAGAA 59.127 29.630 0.00 0.00 0.00 2.52
358 363 8.713271 GTGTTTCAACCATGTTTACAAAAGAAA 58.287 29.630 0.00 0.00 0.00 2.52
359 364 9.442047 TGTTTCAACCATGTTTACAAAAGAAAT 57.558 25.926 0.00 0.00 0.00 2.17
399 410 6.217294 AGAAAGAAGGAGTAGAAAACACTCG 58.783 40.000 0.00 0.00 42.79 4.18
407 418 6.202379 AGGAGTAGAAAACACTCGTAAAAAGC 59.798 38.462 0.00 0.00 42.79 3.51
409 420 6.712549 AGTAGAAAACACTCGTAAAAAGCAC 58.287 36.000 0.00 0.00 0.00 4.40
410 421 5.554822 AGAAAACACTCGTAAAAAGCACA 57.445 34.783 0.00 0.00 0.00 4.57
411 422 6.131544 AGAAAACACTCGTAAAAAGCACAT 57.868 33.333 0.00 0.00 0.00 3.21
413 424 4.483476 AACACTCGTAAAAAGCACATCC 57.517 40.909 0.00 0.00 0.00 3.51
423 434 6.088085 CGTAAAAAGCACATCCATCTTTTGTC 59.912 38.462 0.00 0.00 39.24 3.18
424 435 5.534207 AAAAGCACATCCATCTTTTGTCA 57.466 34.783 0.00 0.00 38.26 3.58
427 438 5.534207 AGCACATCCATCTTTTGTCAAAA 57.466 34.783 10.27 10.27 0.00 2.44
450 461 6.835819 AAAAAGAAAAGGTATGGCTAGGTC 57.164 37.500 0.00 0.00 0.00 3.85
451 462 5.514500 AAAGAAAAGGTATGGCTAGGTCA 57.486 39.130 0.00 0.00 0.00 4.02
452 463 5.514500 AAGAAAAGGTATGGCTAGGTCAA 57.486 39.130 0.00 0.00 0.00 3.18
453 464 5.514500 AGAAAAGGTATGGCTAGGTCAAA 57.486 39.130 0.00 0.00 0.00 2.69
454 465 5.501156 AGAAAAGGTATGGCTAGGTCAAAG 58.499 41.667 0.00 0.00 0.00 2.77
455 466 4.929146 AAAGGTATGGCTAGGTCAAAGT 57.071 40.909 0.00 0.00 0.00 2.66
456 467 4.489306 AAGGTATGGCTAGGTCAAAGTC 57.511 45.455 0.00 0.00 0.00 3.01
457 468 2.431057 AGGTATGGCTAGGTCAAAGTCG 59.569 50.000 0.00 0.00 0.00 4.18
458 469 2.429610 GGTATGGCTAGGTCAAAGTCGA 59.570 50.000 0.00 0.00 0.00 4.20
459 470 2.674796 ATGGCTAGGTCAAAGTCGAC 57.325 50.000 7.70 7.70 35.03 4.20
460 471 1.629043 TGGCTAGGTCAAAGTCGACT 58.371 50.000 13.58 13.58 36.12 4.18
461 472 1.272490 TGGCTAGGTCAAAGTCGACTG 59.728 52.381 20.85 8.81 36.12 3.51
462 473 1.544691 GGCTAGGTCAAAGTCGACTGA 59.455 52.381 20.85 11.35 36.12 3.41
463 474 2.416162 GGCTAGGTCAAAGTCGACTGAG 60.416 54.545 20.85 14.75 36.12 3.35
464 475 2.488545 GCTAGGTCAAAGTCGACTGAGA 59.511 50.000 20.85 16.93 36.12 3.27
465 476 3.129638 GCTAGGTCAAAGTCGACTGAGAT 59.870 47.826 20.85 8.61 36.12 2.75
466 477 4.381079 GCTAGGTCAAAGTCGACTGAGATT 60.381 45.833 20.85 6.62 36.12 2.40
467 478 4.608948 AGGTCAAAGTCGACTGAGATTT 57.391 40.909 20.85 6.20 36.12 2.17
468 479 5.723672 AGGTCAAAGTCGACTGAGATTTA 57.276 39.130 20.85 0.00 36.12 1.40
469 480 6.097915 AGGTCAAAGTCGACTGAGATTTAA 57.902 37.500 20.85 0.00 36.12 1.52
470 481 5.927115 AGGTCAAAGTCGACTGAGATTTAAC 59.073 40.000 20.85 5.22 36.12 2.01
471 482 5.120363 GGTCAAAGTCGACTGAGATTTAACC 59.880 44.000 20.85 11.09 36.12 2.85
472 483 5.694910 GTCAAAGTCGACTGAGATTTAACCA 59.305 40.000 20.85 0.00 32.92 3.67
473 484 6.202188 GTCAAAGTCGACTGAGATTTAACCAA 59.798 38.462 20.85 0.00 32.92 3.67
474 485 6.423905 TCAAAGTCGACTGAGATTTAACCAAG 59.576 38.462 20.85 0.00 0.00 3.61
475 486 5.470047 AGTCGACTGAGATTTAACCAAGT 57.530 39.130 19.30 0.00 0.00 3.16
476 487 5.471257 AGTCGACTGAGATTTAACCAAGTC 58.529 41.667 19.30 0.00 0.00 3.01
477 488 5.244178 AGTCGACTGAGATTTAACCAAGTCT 59.756 40.000 19.30 0.00 33.74 3.24
478 489 5.573669 GTCGACTGAGATTTAACCAAGTCTC 59.426 44.000 8.70 3.67 44.01 3.36
487 498 9.565213 GAGATTTAACCAAGTCTCAATCAAATG 57.435 33.333 5.36 0.00 43.50 2.32
488 499 9.300681 AGATTTAACCAAGTCTCAATCAAATGA 57.699 29.630 0.00 0.00 0.00 2.57
489 500 9.346725 GATTTAACCAAGTCTCAATCAAATGAC 57.653 33.333 0.00 0.00 0.00 3.06
490 501 7.815840 TTAACCAAGTCTCAATCAAATGACA 57.184 32.000 0.00 0.00 32.41 3.58
491 502 6.906157 AACCAAGTCTCAATCAAATGACAT 57.094 33.333 0.00 0.00 32.41 3.06
492 503 9.513906 TTAACCAAGTCTCAATCAAATGACATA 57.486 29.630 0.00 0.00 32.41 2.29
493 504 8.408043 AACCAAGTCTCAATCAAATGACATAA 57.592 30.769 0.00 0.00 32.41 1.90
494 505 7.820648 ACCAAGTCTCAATCAAATGACATAAC 58.179 34.615 0.00 0.00 32.41 1.89
495 506 7.448161 ACCAAGTCTCAATCAAATGACATAACA 59.552 33.333 0.00 0.00 32.41 2.41
496 507 8.464404 CCAAGTCTCAATCAAATGACATAACAT 58.536 33.333 0.00 0.00 32.41 2.71
497 508 9.285770 CAAGTCTCAATCAAATGACATAACATG 57.714 33.333 0.00 0.00 32.41 3.21
498 509 7.993101 AGTCTCAATCAAATGACATAACATGG 58.007 34.615 0.00 0.00 33.60 3.66
499 510 7.613022 AGTCTCAATCAAATGACATAACATGGT 59.387 33.333 0.00 0.00 33.60 3.55
500 511 8.892723 GTCTCAATCAAATGACATAACATGGTA 58.107 33.333 0.00 0.00 33.60 3.25
501 512 9.112725 TCTCAATCAAATGACATAACATGGTAG 57.887 33.333 0.00 0.00 33.60 3.18
502 513 9.112725 CTCAATCAAATGACATAACATGGTAGA 57.887 33.333 0.00 0.00 33.60 2.59
503 514 9.112725 TCAATCAAATGACATAACATGGTAGAG 57.887 33.333 0.00 0.00 33.60 2.43
504 515 9.112725 CAATCAAATGACATAACATGGTAGAGA 57.887 33.333 0.00 0.00 33.60 3.10
505 516 8.899427 ATCAAATGACATAACATGGTAGAGAG 57.101 34.615 0.00 0.00 33.60 3.20
506 517 8.078060 TCAAATGACATAACATGGTAGAGAGA 57.922 34.615 0.00 0.00 33.60 3.10
507 518 8.539544 TCAAATGACATAACATGGTAGAGAGAA 58.460 33.333 0.00 0.00 33.60 2.87
508 519 9.166173 CAAATGACATAACATGGTAGAGAGAAA 57.834 33.333 0.00 0.00 33.60 2.52
509 520 9.739276 AAATGACATAACATGGTAGAGAGAAAA 57.261 29.630 0.00 0.00 33.60 2.29
510 521 9.739276 AATGACATAACATGGTAGAGAGAAAAA 57.261 29.630 0.00 0.00 33.60 1.94
539 550 8.786826 TTTTTACACGGATCTCAACATAAGAT 57.213 30.769 0.00 0.00 36.19 2.40
540 551 8.420374 TTTTACACGGATCTCAACATAAGATC 57.580 34.615 4.85 4.85 45.54 2.75
541 552 5.860941 ACACGGATCTCAACATAAGATCT 57.139 39.130 11.66 0.00 45.56 2.75
542 553 6.227298 ACACGGATCTCAACATAAGATCTT 57.773 37.500 13.56 13.56 45.56 2.40
543 554 7.348080 ACACGGATCTCAACATAAGATCTTA 57.652 36.000 17.32 17.32 45.56 2.10
544 555 7.203910 ACACGGATCTCAACATAAGATCTTAC 58.796 38.462 17.35 1.78 45.56 2.34
545 556 6.360947 CACGGATCTCAACATAAGATCTTACG 59.639 42.308 17.35 12.12 45.56 3.18
546 557 5.859114 CGGATCTCAACATAAGATCTTACGG 59.141 44.000 17.35 14.40 45.56 4.02
547 558 6.294010 CGGATCTCAACATAAGATCTTACGGA 60.294 42.308 17.35 11.03 45.56 4.69
548 559 7.575909 CGGATCTCAACATAAGATCTTACGGAT 60.576 40.741 17.35 13.07 45.56 4.18
549 560 8.740906 GGATCTCAACATAAGATCTTACGGATA 58.259 37.037 17.35 6.28 45.56 2.59
559 570 6.864360 AGATCTTACGGATATAGTATCGGC 57.136 41.667 0.00 0.00 34.33 5.54
560 571 6.593807 AGATCTTACGGATATAGTATCGGCT 58.406 40.000 0.00 0.00 34.33 5.52
561 572 7.055378 AGATCTTACGGATATAGTATCGGCTT 58.945 38.462 0.00 0.00 34.33 4.35
562 573 8.209584 AGATCTTACGGATATAGTATCGGCTTA 58.790 37.037 0.00 0.00 34.33 3.09
563 574 7.783090 TCTTACGGATATAGTATCGGCTTAG 57.217 40.000 4.93 1.90 0.00 2.18
564 575 7.559486 TCTTACGGATATAGTATCGGCTTAGA 58.441 38.462 4.93 3.61 0.00 2.10
565 576 8.209584 TCTTACGGATATAGTATCGGCTTAGAT 58.790 37.037 4.93 0.00 34.79 1.98
566 577 8.743085 TTACGGATATAGTATCGGCTTAGATT 57.257 34.615 4.93 0.00 32.39 2.40
567 578 7.642082 ACGGATATAGTATCGGCTTAGATTT 57.358 36.000 4.93 0.00 32.39 2.17
568 579 8.743085 ACGGATATAGTATCGGCTTAGATTTA 57.257 34.615 4.93 0.00 32.39 1.40
569 580 9.182214 ACGGATATAGTATCGGCTTAGATTTAA 57.818 33.333 4.93 0.00 32.39 1.52
570 581 9.448294 CGGATATAGTATCGGCTTAGATTTAAC 57.552 37.037 0.00 0.00 32.39 2.01
577 588 9.530633 AGTATCGGCTTAGATTTAACAGTTAAG 57.469 33.333 5.88 0.00 32.39 1.85
578 589 9.310716 GTATCGGCTTAGATTTAACAGTTAAGT 57.689 33.333 5.88 3.39 32.39 2.24
579 590 7.823149 TCGGCTTAGATTTAACAGTTAAGTC 57.177 36.000 17.00 17.00 33.52 3.01
580 591 7.609056 TCGGCTTAGATTTAACAGTTAAGTCT 58.391 34.615 25.88 25.88 42.52 3.24
581 592 8.742777 TCGGCTTAGATTTAACAGTTAAGTCTA 58.257 33.333 24.31 24.31 40.96 2.59
582 593 8.805688 CGGCTTAGATTTAACAGTTAAGTCTAC 58.194 37.037 26.44 19.37 41.31 2.59
583 594 9.096160 GGCTTAGATTTAACAGTTAAGTCTACC 57.904 37.037 26.44 22.56 41.31 3.18
584 595 9.649167 GCTTAGATTTAACAGTTAAGTCTACCA 57.351 33.333 26.44 17.32 41.31 3.25
599 610 3.939066 TCTACCAAGACTTAGCAAAGGC 58.061 45.455 0.00 0.00 41.53 4.35
619 630 5.660460 AGGCTGAAAAAGAAAATTCGTTGT 58.340 33.333 0.00 0.00 0.00 3.32
632 643 6.900568 AAATTCGTTGTTGATTTTTGAGCA 57.099 29.167 0.00 0.00 0.00 4.26
720 743 0.817013 GAGCAGAGAGTGAGGGACTG 59.183 60.000 0.00 0.00 41.55 3.51
807 830 1.782569 CAACGTTGCACTGCATGAAAG 59.217 47.619 16.51 0.00 38.76 2.62
834 882 1.516892 CCAAACCCCATCGCCATTG 59.483 57.895 0.00 0.00 0.00 2.82
840 892 1.688269 CCCCATCGCCATTGCCATTT 61.688 55.000 0.00 0.00 0.00 2.32
846 898 0.458889 CGCCATTGCCATTTCCACAG 60.459 55.000 0.00 0.00 0.00 3.66
954 1033 1.810441 CCAAGAGCAGAGCAGAGCG 60.810 63.158 0.00 0.00 35.48 5.03
955 1034 1.810441 CAAGAGCAGAGCAGAGCGG 60.810 63.158 0.00 0.00 35.48 5.52
956 1035 1.981312 AAGAGCAGAGCAGAGCGGA 60.981 57.895 0.00 0.00 35.48 5.54
957 1036 1.947597 AAGAGCAGAGCAGAGCGGAG 61.948 60.000 0.00 0.00 35.48 4.63
993 1072 4.311520 TCATTCCATCCATCCATCCATC 57.688 45.455 0.00 0.00 0.00 3.51
994 1073 3.010920 TCATTCCATCCATCCATCCATCC 59.989 47.826 0.00 0.00 0.00 3.51
995 1074 2.136974 TCCATCCATCCATCCATCCA 57.863 50.000 0.00 0.00 0.00 3.41
996 1075 2.651190 TCCATCCATCCATCCATCCAT 58.349 47.619 0.00 0.00 0.00 3.41
1027 1106 4.767255 CCGTCCTCCCACTGCTGC 62.767 72.222 0.00 0.00 0.00 5.25
1121 1200 3.450115 CCCCGACTCCGACTGGAC 61.450 72.222 0.00 0.00 40.17 4.02
1598 1680 3.169198 CGGCAACTTCTTCTCCGC 58.831 61.111 0.00 0.00 33.36 5.54
2025 2107 2.223144 CGTCAACATGTTCATCAACCGT 59.777 45.455 8.48 0.00 0.00 4.83
2413 2495 0.101399 CCATCTTCCAGAGGACGACG 59.899 60.000 0.00 0.00 32.86 5.12
3743 3865 2.601628 TACATCGCGCCAGGTACGTG 62.602 60.000 8.61 8.61 42.18 4.49
3768 3890 3.069158 ACACGTTCTACTGCTACCACTTT 59.931 43.478 0.00 0.00 0.00 2.66
3772 3894 4.748102 CGTTCTACTGCTACCACTTTTTGA 59.252 41.667 0.00 0.00 0.00 2.69
3773 3895 5.235616 CGTTCTACTGCTACCACTTTTTGAA 59.764 40.000 0.00 0.00 0.00 2.69
3775 3897 7.519970 CGTTCTACTGCTACCACTTTTTGAATT 60.520 37.037 0.00 0.00 0.00 2.17
3776 3898 8.780249 GTTCTACTGCTACCACTTTTTGAATTA 58.220 33.333 0.00 0.00 0.00 1.40
3809 3931 6.929625 TGAACTTTCCACTGTTTGAATTTGA 58.070 32.000 0.00 0.00 0.00 2.69
3810 3932 7.382110 TGAACTTTCCACTGTTTGAATTTGAA 58.618 30.769 0.00 0.00 0.00 2.69
3835 4230 4.786507 CTCACTTGTCGATCAAATTTGCA 58.213 39.130 13.54 2.44 35.48 4.08
3837 4232 5.155643 TCACTTGTCGATCAAATTTGCATG 58.844 37.500 13.54 9.49 35.48 4.06
3838 4233 4.325204 CACTTGTCGATCAAATTTGCATGG 59.675 41.667 13.54 9.16 35.48 3.66
3839 4234 4.022068 ACTTGTCGATCAAATTTGCATGGT 60.022 37.500 13.54 5.10 35.48 3.55
3840 4235 3.835779 TGTCGATCAAATTTGCATGGTG 58.164 40.909 13.54 0.62 0.00 4.17
3841 4236 3.505293 TGTCGATCAAATTTGCATGGTGA 59.495 39.130 13.54 2.87 0.00 4.02
3842 4237 4.022503 TGTCGATCAAATTTGCATGGTGAA 60.023 37.500 13.54 0.00 0.00 3.18
3844 4239 3.861113 CGATCAAATTTGCATGGTGAAGG 59.139 43.478 13.54 0.00 0.00 3.46
3845 4240 4.618927 CGATCAAATTTGCATGGTGAAGGT 60.619 41.667 13.54 0.00 0.00 3.50
3846 4241 3.992643 TCAAATTTGCATGGTGAAGGTG 58.007 40.909 13.54 0.00 0.00 4.00
3847 4242 2.460757 AATTTGCATGGTGAAGGTGC 57.539 45.000 0.00 0.00 39.26 5.01
3851 4246 2.401766 GCATGGTGAAGGTGCCTCG 61.402 63.158 0.00 0.00 32.88 4.63
3852 4247 1.296392 CATGGTGAAGGTGCCTCGA 59.704 57.895 0.00 0.00 0.00 4.04
3864 4259 2.688958 GGTGCCTCGATTCTACTGTAGT 59.311 50.000 14.11 0.00 0.00 2.73
3865 4260 3.243134 GGTGCCTCGATTCTACTGTAGTC 60.243 52.174 14.11 5.24 0.00 2.59
3867 4262 4.815308 GTGCCTCGATTCTACTGTAGTCTA 59.185 45.833 14.11 2.78 0.00 2.59
3871 5774 5.697633 CCTCGATTCTACTGTAGTCTAGTCC 59.302 48.000 14.11 0.00 0.00 3.85
3899 5814 3.345209 TACGCGTCGTGTCCATGGG 62.345 63.158 18.63 0.00 41.39 4.00
3919 5834 1.298157 TGCTGCTGCGTCCAATGTAC 61.298 55.000 11.21 0.00 43.34 2.90
3920 5835 1.021390 GCTGCTGCGTCCAATGTACT 61.021 55.000 0.00 0.00 0.00 2.73
3921 5836 1.442769 CTGCTGCGTCCAATGTACTT 58.557 50.000 0.00 0.00 0.00 2.24
3922 5837 2.616960 CTGCTGCGTCCAATGTACTTA 58.383 47.619 0.00 0.00 0.00 2.24
3924 5839 2.028476 TGCTGCGTCCAATGTACTTACT 60.028 45.455 0.00 0.00 0.00 2.24
3950 5865 3.499737 CGAGTCCGTTGGGCATGC 61.500 66.667 9.90 9.90 0.00 4.06
3951 5866 2.359850 GAGTCCGTTGGGCATGCA 60.360 61.111 21.36 0.00 0.00 3.96
3965 5880 1.790755 CATGCATGCAACACAAGCTT 58.209 45.000 26.68 0.80 43.42 3.74
3968 6153 2.630158 TGCATGCAACACAAGCTTTTT 58.370 38.095 20.30 0.00 43.42 1.94
4055 6268 2.299993 TAGATGCTGCCGAGTCTTTG 57.700 50.000 0.00 0.00 0.00 2.77
4071 6284 6.918569 CGAGTCTTTGTTTCTTTCTCTGTCTA 59.081 38.462 0.00 0.00 0.00 2.59
4074 6287 7.708752 AGTCTTTGTTTCTTTCTCTGTCTACTG 59.291 37.037 0.00 0.00 0.00 2.74
4077 6290 6.465439 TGTTTCTTTCTCTGTCTACTGTGA 57.535 37.500 0.00 0.00 0.00 3.58
4118 6331 4.496895 GGTCGAAATTCTTTTGATGCATCG 59.503 41.667 21.34 7.55 35.61 3.84
4119 6332 4.028187 GTCGAAATTCTTTTGATGCATCGC 60.028 41.667 21.34 0.00 35.61 4.58
4120 6333 4.100529 CGAAATTCTTTTGATGCATCGCT 58.899 39.130 21.34 0.00 0.00 4.93
4156 6379 0.694105 ATGGATGGATGGACCGTGGA 60.694 55.000 0.00 0.00 42.61 4.02
4157 6380 0.694105 TGGATGGATGGACCGTGGAT 60.694 55.000 0.00 0.00 42.61 3.41
4158 6381 0.250467 GGATGGATGGACCGTGGATG 60.250 60.000 0.00 0.00 42.61 3.51
4159 6382 0.758734 GATGGATGGACCGTGGATGA 59.241 55.000 0.00 0.00 42.61 2.92
4184 6420 2.171003 TGGAGAGCGAGTGATGAAAGA 58.829 47.619 0.00 0.00 0.00 2.52
4188 6424 3.594134 AGAGCGAGTGATGAAAGAAAGG 58.406 45.455 0.00 0.00 0.00 3.11
4190 6426 3.997021 GAGCGAGTGATGAAAGAAAGGAA 59.003 43.478 0.00 0.00 0.00 3.36
4191 6427 3.999663 AGCGAGTGATGAAAGAAAGGAAG 59.000 43.478 0.00 0.00 0.00 3.46
4192 6428 3.997021 GCGAGTGATGAAAGAAAGGAAGA 59.003 43.478 0.00 0.00 0.00 2.87
4193 6429 4.452455 GCGAGTGATGAAAGAAAGGAAGAA 59.548 41.667 0.00 0.00 0.00 2.52
4194 6430 5.049405 GCGAGTGATGAAAGAAAGGAAGAAA 60.049 40.000 0.00 0.00 0.00 2.52
4275 6523 1.736681 GAAGAGCTCCTGCATCACAAC 59.263 52.381 10.93 0.00 42.74 3.32
4276 6524 0.035630 AGAGCTCCTGCATCACAACC 60.036 55.000 10.93 0.00 42.74 3.77
4277 6525 1.001641 AGCTCCTGCATCACAACCC 60.002 57.895 0.00 0.00 42.74 4.11
4278 6526 1.303561 GCTCCTGCATCACAACCCA 60.304 57.895 0.00 0.00 39.41 4.51
4280 6528 0.250858 CTCCTGCATCACAACCCACA 60.251 55.000 0.00 0.00 0.00 4.17
4281 6529 0.405198 TCCTGCATCACAACCCACAT 59.595 50.000 0.00 0.00 0.00 3.21
4282 6530 0.528924 CCTGCATCACAACCCACATG 59.471 55.000 0.00 0.00 0.00 3.21
4322 6573 4.735662 ACTCTAGACTTATTAGCGAGCG 57.264 45.455 0.00 0.00 0.00 5.03
4323 6574 4.378774 ACTCTAGACTTATTAGCGAGCGA 58.621 43.478 0.00 0.00 0.00 4.93
4324 6575 4.449743 ACTCTAGACTTATTAGCGAGCGAG 59.550 45.833 0.00 0.00 0.00 5.03
4325 6576 3.747010 TCTAGACTTATTAGCGAGCGAGG 59.253 47.826 0.00 0.00 0.00 4.63
4326 6577 1.001158 AGACTTATTAGCGAGCGAGGC 60.001 52.381 0.00 0.00 0.00 4.70
4338 6664 0.032952 AGCGAGGCGAGTACAACAAA 59.967 50.000 0.00 0.00 0.00 2.83
4380 6711 8.693542 ACTACTTTACAAAGTTTATATCGCGT 57.306 30.769 12.28 0.00 46.52 6.01
4384 6724 8.801913 ACTTTACAAAGTTTATATCGCGTCTAC 58.198 33.333 5.77 0.00 46.52 2.59
4401 6746 3.802685 GTCTACTTATGCATGGTCGGAAC 59.197 47.826 10.16 0.00 0.00 3.62
4443 6827 4.313277 TCGATCCTCATCTGACAATGAC 57.687 45.455 0.00 0.00 32.36 3.06
4446 6830 4.448060 CGATCCTCATCTGACAATGACATG 59.552 45.833 0.00 0.00 32.36 3.21
4447 6831 3.538591 TCCTCATCTGACAATGACATGC 58.461 45.455 0.00 0.00 32.36 4.06
4448 6832 3.054948 TCCTCATCTGACAATGACATGCA 60.055 43.478 0.00 0.00 32.36 3.96
4449 6833 3.883489 CCTCATCTGACAATGACATGCAT 59.117 43.478 0.00 0.00 39.43 3.96
4450 6834 4.261197 CCTCATCTGACAATGACATGCATG 60.261 45.833 25.09 25.09 37.28 4.06
4451 6835 3.066203 TCATCTGACAATGACATGCATGC 59.934 43.478 26.53 18.59 37.28 4.06
4452 6836 2.438411 TCTGACAATGACATGCATGCA 58.562 42.857 26.53 25.04 37.28 3.96
4453 6837 3.020984 TCTGACAATGACATGCATGCAT 58.979 40.909 27.46 27.46 37.28 3.96
4470 6854 5.968254 CATGCATGCATATCTCTCTCTAGT 58.032 41.667 31.73 3.67 34.91 2.57
4471 6855 7.098074 CATGCATGCATATCTCTCTCTAGTA 57.902 40.000 31.73 0.00 34.91 1.82
4487 6871 8.967918 TCTCTCTAGTATCTCTCTATCTACAGC 58.032 40.741 0.00 0.00 0.00 4.40
4509 6893 4.381411 CAGCTACTAGGAAATTACCAGCC 58.619 47.826 0.00 0.00 0.00 4.85
4513 6897 2.846827 ACTAGGAAATTACCAGCCAGCT 59.153 45.455 0.00 0.00 0.00 4.24
4514 6898 2.426842 AGGAAATTACCAGCCAGCTC 57.573 50.000 0.00 0.00 0.00 4.09
4516 6900 1.017387 GAAATTACCAGCCAGCTCCG 58.983 55.000 0.00 0.00 0.00 4.63
4526 6910 2.418777 CAGCTCCGGCATCGATCA 59.581 61.111 0.00 0.00 41.70 2.92
4557 6941 5.004448 GGGTCTAGCTGCTTTACTCTTTTT 58.996 41.667 7.79 0.00 0.00 1.94
4614 7001 2.099427 GCTTTAGCTAGGACTACGTGCT 59.901 50.000 0.00 0.00 38.00 4.40
4615 7002 3.792794 GCTTTAGCTAGGACTACGTGCTC 60.793 52.174 0.00 0.00 35.47 4.26
4616 7003 1.964552 TAGCTAGGACTACGTGCTCC 58.035 55.000 0.00 1.16 35.47 4.70
4617 7004 0.256464 AGCTAGGACTACGTGCTCCT 59.744 55.000 17.33 17.33 40.26 3.69
4618 7005 0.382515 GCTAGGACTACGTGCTCCTG 59.617 60.000 20.73 13.61 37.48 3.86
4619 7006 0.382515 CTAGGACTACGTGCTCCTGC 59.617 60.000 20.73 0.00 37.48 4.85
4620 7007 0.034380 TAGGACTACGTGCTCCTGCT 60.034 55.000 20.73 3.41 37.48 4.24
4621 7008 0.034380 AGGACTACGTGCTCCTGCTA 60.034 55.000 13.58 0.00 35.42 3.49
4622 7009 0.100861 GGACTACGTGCTCCTGCTAC 59.899 60.000 0.00 0.00 40.48 3.58
4623 7010 1.096416 GACTACGTGCTCCTGCTACT 58.904 55.000 0.00 0.00 40.48 2.57
4624 7011 1.473278 GACTACGTGCTCCTGCTACTT 59.527 52.381 0.00 0.00 40.48 2.24
4625 7012 2.681848 GACTACGTGCTCCTGCTACTTA 59.318 50.000 0.00 0.00 40.48 2.24
4626 7013 2.422832 ACTACGTGCTCCTGCTACTTAC 59.577 50.000 0.00 0.00 40.48 2.34
4627 7014 1.254026 ACGTGCTCCTGCTACTTACA 58.746 50.000 0.00 0.00 40.48 2.41
4628 7015 1.067776 ACGTGCTCCTGCTACTTACAC 60.068 52.381 0.00 0.00 40.48 2.90
4629 7016 1.202582 CGTGCTCCTGCTACTTACACT 59.797 52.381 0.00 0.00 40.48 3.55
4630 7017 2.422479 CGTGCTCCTGCTACTTACACTA 59.578 50.000 0.00 0.00 40.48 2.74
4631 7018 3.731264 CGTGCTCCTGCTACTTACACTAC 60.731 52.174 0.00 0.00 40.48 2.73
4632 7019 2.422479 TGCTCCTGCTACTTACACTACG 59.578 50.000 0.00 0.00 40.48 3.51
4663 7052 2.214387 GCACTTTTGCTCTGCTTTGT 57.786 45.000 0.00 0.00 46.17 2.83
4664 7053 3.354089 GCACTTTTGCTCTGCTTTGTA 57.646 42.857 0.00 0.00 46.17 2.41
4665 7054 3.045688 GCACTTTTGCTCTGCTTTGTAC 58.954 45.455 0.00 0.00 46.17 2.90
4682 7089 4.251543 TGTACTGCAAAGACTGATCGAA 57.748 40.909 0.00 0.00 0.00 3.71
4693 7100 5.821516 AGACTGATCGAACCTAGTAACAG 57.178 43.478 0.00 0.00 0.00 3.16
4744 7161 3.713003 CCCTCCCTTTGCTTTCCTTTAT 58.287 45.455 0.00 0.00 0.00 1.40
4748 7165 5.239525 CCTCCCTTTGCTTTCCTTTATATCG 59.760 44.000 0.00 0.00 0.00 2.92
4760 7177 3.844657 CCTTTATATCGAATCGACGACCG 59.155 47.826 7.77 13.32 44.84 4.79
4768 7185 2.564975 TCGACGACCGAGCTTTCC 59.435 61.111 0.00 0.00 43.23 3.13
4769 7186 2.874780 CGACGACCGAGCTTTCCG 60.875 66.667 0.00 0.00 41.76 4.30
4770 7187 2.257676 GACGACCGAGCTTTCCGT 59.742 61.111 0.00 4.50 36.08 4.69
4788 7205 2.973224 CCGTTGTTCAATTGCTTTCGAG 59.027 45.455 0.00 0.00 0.00 4.04
4819 7236 5.634118 ACAATCCTAGAGAGATCCAGAGAG 58.366 45.833 0.00 0.00 0.00 3.20
4822 7239 5.567037 TCCTAGAGAGATCCAGAGAGAAG 57.433 47.826 0.00 0.00 0.00 2.85
4823 7240 5.223655 TCCTAGAGAGATCCAGAGAGAAGA 58.776 45.833 0.00 0.00 0.00 2.87
4824 7241 5.307976 TCCTAGAGAGATCCAGAGAGAAGAG 59.692 48.000 0.00 0.00 0.00 2.85
4853 7271 5.060662 CATGTATCCATGGTACCTACGAG 57.939 47.826 14.36 0.11 43.95 4.18
4854 7272 4.174704 TGTATCCATGGTACCTACGAGT 57.825 45.455 14.36 0.00 0.00 4.18
4855 7273 4.139786 TGTATCCATGGTACCTACGAGTC 58.860 47.826 14.36 0.20 0.00 3.36
4872 7410 3.495331 GAGTCCAGCTCTCCATCATCTA 58.505 50.000 0.00 0.00 40.98 1.98
4906 7444 2.263077 CTCCGTGATCTTCCTTTGTCG 58.737 52.381 0.00 0.00 0.00 4.35
4924 7462 6.872628 TTGTCGATACGAATATACCACTCT 57.127 37.500 0.00 0.00 37.72 3.24
4928 7466 7.117379 TGTCGATACGAATATACCACTCTACTG 59.883 40.741 0.00 0.00 37.72 2.74
4931 7469 5.184340 ACGAATATACCACTCTACTGTGC 57.816 43.478 0.00 0.00 36.68 4.57
4949 7487 2.733552 GTGCATGTACACTGACACTGAG 59.266 50.000 9.26 0.00 37.58 3.35
4960 7498 2.735663 CTGACACTGAGACTGACAATGC 59.264 50.000 0.00 0.00 0.00 3.56
4964 7502 3.136763 CACTGAGACTGACAATGCAACT 58.863 45.455 0.00 0.00 0.00 3.16
4966 7504 2.407090 TGAGACTGACAATGCAACTCG 58.593 47.619 0.00 0.00 0.00 4.18
4967 7505 2.224042 TGAGACTGACAATGCAACTCGT 60.224 45.455 0.00 0.00 0.00 4.18
5231 7778 2.047274 CGCTGTTCGTGGGGATGT 60.047 61.111 0.00 0.00 0.00 3.06
5325 7875 4.329545 GCCAACTCCGTCCCTGCA 62.330 66.667 0.00 0.00 0.00 4.41
5331 7881 4.988716 TCCGTCCCTGCACGACCT 62.989 66.667 0.00 0.00 42.69 3.85
5332 7882 4.436998 CCGTCCCTGCACGACCTC 62.437 72.222 0.00 0.00 42.69 3.85
5338 7888 3.062466 CTGCACGACCTCCGAGGA 61.062 66.667 21.89 0.00 37.67 3.71
5339 7889 3.057547 CTGCACGACCTCCGAGGAG 62.058 68.421 21.89 15.77 40.23 3.69
5347 7897 2.912542 CTCCGAGGAGGCGCCATA 60.913 66.667 31.54 4.15 40.77 2.74
5355 7905 1.371183 GAGGCGCCATACCTATGCA 59.629 57.895 31.54 0.00 37.77 3.96
5360 7910 1.611673 GCGCCATACCTATGCATCCTT 60.612 52.381 0.19 0.00 32.40 3.36
5455 8005 0.028110 GCGAAGGCCGATGAATGAAC 59.972 55.000 0.00 0.00 41.76 3.18
5461 8011 1.939934 GGCCGATGAATGAACGAATGA 59.060 47.619 0.00 0.00 0.00 2.57
5487 8041 0.177604 CAGGAGCTGTGATGGAGACC 59.822 60.000 0.00 0.00 0.00 3.85
5548 8116 1.366366 GCTCCGGCCATATGTACGT 59.634 57.895 2.24 0.00 0.00 3.57
5549 8117 0.599558 GCTCCGGCCATATGTACGTA 59.400 55.000 2.24 0.00 0.00 3.57
5550 8118 1.000060 GCTCCGGCCATATGTACGTAA 60.000 52.381 2.24 0.00 0.00 3.18
5551 8119 2.669364 CTCCGGCCATATGTACGTAAC 58.331 52.381 2.24 0.00 0.00 2.50
5552 8120 1.001487 TCCGGCCATATGTACGTAACG 60.001 52.381 2.24 2.53 0.00 3.18
5553 8121 1.269206 CCGGCCATATGTACGTAACGT 60.269 52.381 2.24 0.00 44.35 3.99
5554 8122 2.031245 CCGGCCATATGTACGTAACGTA 60.031 50.000 2.24 0.00 41.54 3.57
5555 8123 3.366273 CCGGCCATATGTACGTAACGTAT 60.366 47.826 2.24 0.80 44.12 3.06
5556 8124 4.229096 CGGCCATATGTACGTAACGTATT 58.771 43.478 2.24 0.00 44.12 1.89
5699 8314 2.042831 GCTGTGCATGGTCTGACCC 61.043 63.158 23.42 9.31 37.50 4.46
5702 8317 1.448540 GTGCATGGTCTGACCCTCG 60.449 63.158 23.42 12.73 37.50 4.63
5741 8356 2.789208 CAATCAAGGCATGCTTGTACG 58.211 47.619 18.92 8.61 31.91 3.67
5742 8357 2.113860 ATCAAGGCATGCTTGTACGT 57.886 45.000 18.92 0.00 33.84 3.57
5745 8363 1.129251 CAAGGCATGCTTGTACGTCTG 59.871 52.381 18.92 0.00 0.00 3.51
5761 8379 2.943345 CTGACCTGCGCAACACGTC 61.943 63.158 13.05 14.79 46.11 4.34
5762 8380 2.964925 GACCTGCGCAACACGTCA 60.965 61.111 13.05 0.00 46.11 4.35
5763 8381 2.943345 GACCTGCGCAACACGTCAG 61.943 63.158 13.05 0.00 46.11 3.51
5764 8382 2.967076 CCTGCGCAACACGTCAGT 60.967 61.111 13.05 0.00 46.11 3.41
5830 8468 1.812571 GGATTTGTCACGGCAGATGTT 59.187 47.619 0.00 0.00 0.00 2.71
5954 8593 1.485294 TTTAGACAGCTTCGGGCCCA 61.485 55.000 24.92 6.15 43.05 5.36
6027 8677 1.373748 GAGTCGCTGTAAACCGGCA 60.374 57.895 0.00 0.00 46.47 5.69
6078 8731 5.125417 TGTTTCTTCTTGCTTGTAGCTTGTT 59.875 36.000 0.00 0.00 42.97 2.83
6119 8773 5.014123 TGCCCCTCCTTATATATGTTGAAGG 59.986 44.000 5.85 5.85 39.94 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.035208 TCCTTCGAAGAAAGAAAGTGCAAC 59.965 41.667 26.61 0.00 45.90 4.17
3 4 4.196193 TCCTTCGAAGAAAGAAAGTGCAA 58.804 39.130 26.61 0.00 45.90 4.08
4 5 3.804036 TCCTTCGAAGAAAGAAAGTGCA 58.196 40.909 26.61 0.00 45.90 4.57
5 6 4.813296 TTCCTTCGAAGAAAGAAAGTGC 57.187 40.909 26.61 0.00 45.90 4.40
30 31 5.428184 TGAAAACATGGGGTTCACTTTTT 57.572 34.783 0.00 0.00 39.29 1.94
31 32 5.628797 ATGAAAACATGGGGTTCACTTTT 57.371 34.783 9.35 0.00 39.29 2.27
32 33 5.367302 CAATGAAAACATGGGGTTCACTTT 58.633 37.500 9.35 1.11 39.29 2.66
33 34 4.743348 GCAATGAAAACATGGGGTTCACTT 60.743 41.667 9.35 4.63 39.29 3.16
34 35 3.244181 GCAATGAAAACATGGGGTTCACT 60.244 43.478 9.35 0.00 39.29 3.41
35 36 3.066380 GCAATGAAAACATGGGGTTCAC 58.934 45.455 9.35 0.00 39.29 3.18
36 37 2.971330 AGCAATGAAAACATGGGGTTCA 59.029 40.909 9.52 9.52 39.29 3.18
37 38 3.683365 AGCAATGAAAACATGGGGTTC 57.317 42.857 0.00 0.00 39.29 3.62
38 39 3.055891 GCTAGCAATGAAAACATGGGGTT 60.056 43.478 10.63 0.00 42.98 4.11
39 40 2.497273 GCTAGCAATGAAAACATGGGGT 59.503 45.455 10.63 0.00 0.00 4.95
40 41 2.496871 TGCTAGCAATGAAAACATGGGG 59.503 45.455 16.84 0.00 0.00 4.96
41 42 3.056678 TGTGCTAGCAATGAAAACATGGG 60.057 43.478 21.29 0.00 0.00 4.00
42 43 4.171005 CTGTGCTAGCAATGAAAACATGG 58.829 43.478 21.29 0.00 0.00 3.66
43 44 4.801891 ACTGTGCTAGCAATGAAAACATG 58.198 39.130 21.29 7.83 0.00 3.21
44 45 5.458041 AACTGTGCTAGCAATGAAAACAT 57.542 34.783 21.29 0.00 0.00 2.71
45 46 4.916983 AACTGTGCTAGCAATGAAAACA 57.083 36.364 21.29 10.36 0.00 2.83
46 47 5.519927 ACAAAACTGTGCTAGCAATGAAAAC 59.480 36.000 21.29 5.57 0.00 2.43
47 48 5.659463 ACAAAACTGTGCTAGCAATGAAAA 58.341 33.333 21.29 0.20 0.00 2.29
48 49 5.261209 ACAAAACTGTGCTAGCAATGAAA 57.739 34.783 21.29 2.07 0.00 2.69
49 50 4.916983 ACAAAACTGTGCTAGCAATGAA 57.083 36.364 21.29 4.72 0.00 2.57
50 51 4.916983 AACAAAACTGTGCTAGCAATGA 57.083 36.364 21.29 5.55 0.00 2.57
51 52 4.318263 GCAAACAAAACTGTGCTAGCAATG 60.318 41.667 21.29 17.11 34.13 2.82
52 53 3.803778 GCAAACAAAACTGTGCTAGCAAT 59.196 39.130 21.29 5.16 34.13 3.56
53 54 3.186119 GCAAACAAAACTGTGCTAGCAA 58.814 40.909 21.29 9.13 34.13 3.91
54 55 2.794282 CGCAAACAAAACTGTGCTAGCA 60.794 45.455 14.93 14.93 34.79 3.49
55 56 1.780860 CGCAAACAAAACTGTGCTAGC 59.219 47.619 8.10 8.10 34.79 3.42
56 57 1.780860 GCGCAAACAAAACTGTGCTAG 59.219 47.619 0.30 0.00 43.96 3.42
57 58 1.133216 TGCGCAAACAAAACTGTGCTA 59.867 42.857 8.16 0.00 46.72 3.49
58 59 0.108898 TGCGCAAACAAAACTGTGCT 60.109 45.000 8.16 0.00 46.72 4.40
59 60 0.929615 ATGCGCAAACAAAACTGTGC 59.070 45.000 17.11 0.81 46.76 4.57
60 61 2.153627 GCTATGCGCAAACAAAACTGTG 59.846 45.455 17.11 0.00 38.92 3.66
155 156 7.537649 GGGAATGCTTACGACTTTTCTAAAAAG 59.462 37.037 9.93 9.93 0.00 2.27
169 170 5.817816 ACATCTTTTCTAGGGAATGCTTACG 59.182 40.000 0.00 0.00 0.00 3.18
170 171 8.732746 TTACATCTTTTCTAGGGAATGCTTAC 57.267 34.615 0.00 0.00 0.00 2.34
171 172 8.768397 TCTTACATCTTTTCTAGGGAATGCTTA 58.232 33.333 0.00 0.00 0.00 3.09
243 244 2.660572 TGGCACAACTTTAAGGAGCAA 58.339 42.857 0.00 0.00 31.92 3.91
244 245 2.356665 TGGCACAACTTTAAGGAGCA 57.643 45.000 0.00 0.00 31.92 4.26
257 258 1.369321 GCCCCGAAAAATTGGCACA 59.631 52.632 0.00 0.00 43.46 4.57
259 260 2.653702 CGCCCCGAAAAATTGGCA 59.346 55.556 3.45 0.00 44.22 4.92
265 266 1.182385 AATTCCAGCGCCCCGAAAAA 61.182 50.000 2.29 0.00 0.00 1.94
270 271 2.063541 GATGAAATTCCAGCGCCCCG 62.064 60.000 2.29 0.00 0.00 5.73
282 283 4.463891 GTCAACATGGTCCTTGGATGAAAT 59.536 41.667 13.65 0.00 0.00 2.17
286 287 1.739466 CGTCAACATGGTCCTTGGATG 59.261 52.381 9.44 7.80 0.00 3.51
287 288 1.351017 ACGTCAACATGGTCCTTGGAT 59.649 47.619 9.44 0.00 0.00 3.41
288 289 0.762418 ACGTCAACATGGTCCTTGGA 59.238 50.000 9.44 0.00 0.00 3.53
296 300 2.029244 GCGATTAGTCACGTCAACATGG 59.971 50.000 0.00 0.00 0.00 3.66
307 311 2.778299 ACTTTGGCAAGCGATTAGTCA 58.222 42.857 0.00 0.00 32.57 3.41
308 312 6.202954 ACATATACTTTGGCAAGCGATTAGTC 59.797 38.462 0.00 0.00 32.57 2.59
309 313 6.017934 CACATATACTTTGGCAAGCGATTAGT 60.018 38.462 0.00 2.51 32.57 2.24
310 314 6.017934 ACACATATACTTTGGCAAGCGATTAG 60.018 38.462 0.00 0.00 32.57 1.73
317 321 6.586082 GGTTGAAACACATATACTTTGGCAAG 59.414 38.462 0.00 0.00 35.92 4.01
318 322 6.040955 TGGTTGAAACACATATACTTTGGCAA 59.959 34.615 0.00 0.00 0.00 4.52
319 323 5.536538 TGGTTGAAACACATATACTTTGGCA 59.463 36.000 0.00 0.00 0.00 4.92
329 333 9.307121 CTTTTGTAAACATGGTTGAAACACATA 57.693 29.630 6.16 0.00 0.00 2.29
376 387 5.984323 ACGAGTGTTTTCTACTCCTTCTTTC 59.016 40.000 0.00 0.00 41.10 2.62
381 392 7.254692 GCTTTTTACGAGTGTTTTCTACTCCTT 60.255 37.037 0.00 0.00 41.10 3.36
383 394 6.018507 TGCTTTTTACGAGTGTTTTCTACTCC 60.019 38.462 0.00 0.00 41.10 3.85
384 395 6.844779 GTGCTTTTTACGAGTGTTTTCTACTC 59.155 38.462 0.00 0.00 40.83 2.59
386 397 6.480285 TGTGCTTTTTACGAGTGTTTTCTAC 58.520 36.000 0.00 0.00 0.00 2.59
390 401 5.163602 TGGATGTGCTTTTTACGAGTGTTTT 60.164 36.000 0.00 0.00 0.00 2.43
391 402 4.336993 TGGATGTGCTTTTTACGAGTGTTT 59.663 37.500 0.00 0.00 0.00 2.83
395 406 4.579869 AGATGGATGTGCTTTTTACGAGT 58.420 39.130 0.00 0.00 0.00 4.18
399 410 6.922957 TGACAAAAGATGGATGTGCTTTTTAC 59.077 34.615 0.00 0.00 39.16 2.01
427 438 6.311735 TGACCTAGCCATACCTTTTCTTTTT 58.688 36.000 0.00 0.00 0.00 1.94
429 440 5.514500 TGACCTAGCCATACCTTTTCTTT 57.486 39.130 0.00 0.00 0.00 2.52
430 441 5.514500 TTGACCTAGCCATACCTTTTCTT 57.486 39.130 0.00 0.00 0.00 2.52
431 442 5.014228 ACTTTGACCTAGCCATACCTTTTCT 59.986 40.000 0.00 0.00 0.00 2.52
432 443 5.254115 ACTTTGACCTAGCCATACCTTTTC 58.746 41.667 0.00 0.00 0.00 2.29
433 444 5.254115 GACTTTGACCTAGCCATACCTTTT 58.746 41.667 0.00 0.00 0.00 2.27
434 445 4.623171 CGACTTTGACCTAGCCATACCTTT 60.623 45.833 0.00 0.00 0.00 3.11
435 446 3.118738 CGACTTTGACCTAGCCATACCTT 60.119 47.826 0.00 0.00 0.00 3.50
436 447 2.431057 CGACTTTGACCTAGCCATACCT 59.569 50.000 0.00 0.00 0.00 3.08
437 448 2.429610 TCGACTTTGACCTAGCCATACC 59.570 50.000 0.00 0.00 0.00 2.73
438 449 3.130693 AGTCGACTTTGACCTAGCCATAC 59.869 47.826 13.58 0.00 39.77 2.39
439 450 3.130516 CAGTCGACTTTGACCTAGCCATA 59.869 47.826 17.26 0.00 39.77 2.74
440 451 2.093973 CAGTCGACTTTGACCTAGCCAT 60.094 50.000 17.26 0.00 39.77 4.40
441 452 1.272490 CAGTCGACTTTGACCTAGCCA 59.728 52.381 17.26 0.00 39.77 4.75
442 453 1.544691 TCAGTCGACTTTGACCTAGCC 59.455 52.381 17.26 0.00 39.77 3.93
443 454 2.488545 TCTCAGTCGACTTTGACCTAGC 59.511 50.000 17.26 0.00 39.77 3.42
444 455 4.974368 ATCTCAGTCGACTTTGACCTAG 57.026 45.455 17.26 1.73 39.77 3.02
445 456 5.723672 AAATCTCAGTCGACTTTGACCTA 57.276 39.130 17.26 0.00 39.77 3.08
446 457 4.608948 AAATCTCAGTCGACTTTGACCT 57.391 40.909 17.26 5.41 39.77 3.85
447 458 5.120363 GGTTAAATCTCAGTCGACTTTGACC 59.880 44.000 17.26 18.48 39.77 4.02
448 459 5.694910 TGGTTAAATCTCAGTCGACTTTGAC 59.305 40.000 17.26 13.58 39.21 3.18
449 460 5.849510 TGGTTAAATCTCAGTCGACTTTGA 58.150 37.500 17.26 16.79 0.00 2.69
450 461 6.202954 ACTTGGTTAAATCTCAGTCGACTTTG 59.797 38.462 17.26 11.69 0.00 2.77
451 462 6.289064 ACTTGGTTAAATCTCAGTCGACTTT 58.711 36.000 17.26 10.06 0.00 2.66
452 463 5.855045 ACTTGGTTAAATCTCAGTCGACTT 58.145 37.500 17.26 2.43 0.00 3.01
453 464 5.244178 AGACTTGGTTAAATCTCAGTCGACT 59.756 40.000 13.58 13.58 0.00 4.18
454 465 5.471257 AGACTTGGTTAAATCTCAGTCGAC 58.529 41.667 7.70 7.70 0.00 4.20
455 466 5.243060 TGAGACTTGGTTAAATCTCAGTCGA 59.757 40.000 0.00 0.00 41.99 4.20
456 467 5.470368 TGAGACTTGGTTAAATCTCAGTCG 58.530 41.667 0.00 0.00 41.99 4.18
457 468 7.604164 TGATTGAGACTTGGTTAAATCTCAGTC 59.396 37.037 14.97 14.97 46.12 3.51
458 469 7.453393 TGATTGAGACTTGGTTAAATCTCAGT 58.547 34.615 3.29 0.93 46.12 3.41
459 470 7.912056 TGATTGAGACTTGGTTAAATCTCAG 57.088 36.000 3.29 0.00 46.12 3.35
460 471 8.690203 TTTGATTGAGACTTGGTTAAATCTCA 57.310 30.769 0.00 0.00 44.46 3.27
461 472 9.565213 CATTTGATTGAGACTTGGTTAAATCTC 57.435 33.333 0.00 0.00 38.46 2.75
462 473 9.300681 TCATTTGATTGAGACTTGGTTAAATCT 57.699 29.630 0.00 0.00 0.00 2.40
463 474 9.346725 GTCATTTGATTGAGACTTGGTTAAATC 57.653 33.333 0.00 0.00 0.00 2.17
464 475 8.859090 TGTCATTTGATTGAGACTTGGTTAAAT 58.141 29.630 0.00 0.00 32.41 1.40
465 476 8.231692 TGTCATTTGATTGAGACTTGGTTAAA 57.768 30.769 0.00 0.00 32.41 1.52
466 477 7.815840 TGTCATTTGATTGAGACTTGGTTAA 57.184 32.000 0.00 0.00 32.41 2.01
467 478 9.513906 TTATGTCATTTGATTGAGACTTGGTTA 57.486 29.630 0.00 0.00 32.41 2.85
468 479 6.906157 ATGTCATTTGATTGAGACTTGGTT 57.094 33.333 0.00 0.00 32.41 3.67
469 480 7.448161 TGTTATGTCATTTGATTGAGACTTGGT 59.552 33.333 0.00 0.00 32.41 3.67
470 481 7.819644 TGTTATGTCATTTGATTGAGACTTGG 58.180 34.615 0.00 0.00 32.41 3.61
471 482 9.285770 CATGTTATGTCATTTGATTGAGACTTG 57.714 33.333 0.00 0.00 32.41 3.16
472 483 8.464404 CCATGTTATGTCATTTGATTGAGACTT 58.536 33.333 0.00 0.00 32.41 3.01
473 484 7.613022 ACCATGTTATGTCATTTGATTGAGACT 59.387 33.333 0.00 0.00 32.41 3.24
474 485 7.765307 ACCATGTTATGTCATTTGATTGAGAC 58.235 34.615 0.00 0.00 0.00 3.36
475 486 7.943079 ACCATGTTATGTCATTTGATTGAGA 57.057 32.000 0.00 0.00 0.00 3.27
476 487 9.112725 TCTACCATGTTATGTCATTTGATTGAG 57.887 33.333 0.00 0.00 0.00 3.02
477 488 9.112725 CTCTACCATGTTATGTCATTTGATTGA 57.887 33.333 0.00 0.00 0.00 2.57
478 489 9.112725 TCTCTACCATGTTATGTCATTTGATTG 57.887 33.333 0.00 0.00 0.00 2.67
479 490 9.334947 CTCTCTACCATGTTATGTCATTTGATT 57.665 33.333 0.00 0.00 0.00 2.57
480 491 8.708378 TCTCTCTACCATGTTATGTCATTTGAT 58.292 33.333 0.00 0.00 0.00 2.57
481 492 8.078060 TCTCTCTACCATGTTATGTCATTTGA 57.922 34.615 0.00 0.00 0.00 2.69
482 493 8.722480 TTCTCTCTACCATGTTATGTCATTTG 57.278 34.615 0.00 0.00 0.00 2.32
483 494 9.739276 TTTTCTCTCTACCATGTTATGTCATTT 57.261 29.630 0.00 0.00 0.00 2.32
484 495 9.739276 TTTTTCTCTCTACCATGTTATGTCATT 57.261 29.630 0.00 0.00 0.00 2.57
514 525 8.786826 ATCTTATGTTGAGATCCGTGTAAAAA 57.213 30.769 0.00 0.00 0.00 1.94
515 526 8.258007 AGATCTTATGTTGAGATCCGTGTAAAA 58.742 33.333 9.76 0.00 46.88 1.52
516 527 7.782049 AGATCTTATGTTGAGATCCGTGTAAA 58.218 34.615 9.76 0.00 46.88 2.01
517 528 7.348080 AGATCTTATGTTGAGATCCGTGTAA 57.652 36.000 9.76 0.00 46.88 2.41
518 529 6.961360 AGATCTTATGTTGAGATCCGTGTA 57.039 37.500 9.76 0.00 46.88 2.90
519 530 5.860941 AGATCTTATGTTGAGATCCGTGT 57.139 39.130 9.76 0.00 46.88 4.49
520 531 6.360947 CGTAAGATCTTATGTTGAGATCCGTG 59.639 42.308 21.82 0.00 46.88 4.94
521 532 6.439599 CGTAAGATCTTATGTTGAGATCCGT 58.560 40.000 21.82 2.95 46.88 4.69
522 533 5.859114 CCGTAAGATCTTATGTTGAGATCCG 59.141 44.000 25.91 16.64 46.88 4.18
523 534 6.982852 TCCGTAAGATCTTATGTTGAGATCC 58.017 40.000 25.91 7.79 46.88 3.36
533 544 9.001542 GCCGATACTATATCCGTAAGATCTTAT 57.998 37.037 17.95 6.11 43.02 1.73
534 545 8.209584 AGCCGATACTATATCCGTAAGATCTTA 58.790 37.037 11.24 11.24 43.02 2.10
535 546 7.055378 AGCCGATACTATATCCGTAAGATCTT 58.945 38.462 13.56 13.56 43.02 2.40
536 547 6.593807 AGCCGATACTATATCCGTAAGATCT 58.406 40.000 0.00 0.00 43.02 2.75
537 548 6.864360 AGCCGATACTATATCCGTAAGATC 57.136 41.667 0.00 0.00 43.02 2.75
538 549 8.209584 TCTAAGCCGATACTATATCCGTAAGAT 58.790 37.037 0.00 0.00 43.02 2.40
539 550 7.559486 TCTAAGCCGATACTATATCCGTAAGA 58.441 38.462 0.00 0.00 43.02 2.10
540 551 7.783090 TCTAAGCCGATACTATATCCGTAAG 57.217 40.000 0.00 0.00 0.00 2.34
541 552 8.743085 AATCTAAGCCGATACTATATCCGTAA 57.257 34.615 0.00 0.00 0.00 3.18
542 553 8.743085 AAATCTAAGCCGATACTATATCCGTA 57.257 34.615 0.00 0.00 0.00 4.02
543 554 7.642082 AAATCTAAGCCGATACTATATCCGT 57.358 36.000 0.00 0.00 0.00 4.69
544 555 9.448294 GTTAAATCTAAGCCGATACTATATCCG 57.552 37.037 0.00 0.00 0.00 4.18
551 562 9.530633 CTTAACTGTTAAATCTAAGCCGATACT 57.469 33.333 13.46 0.00 0.00 2.12
552 563 9.310716 ACTTAACTGTTAAATCTAAGCCGATAC 57.689 33.333 13.46 0.00 0.00 2.24
553 564 9.525409 GACTTAACTGTTAAATCTAAGCCGATA 57.475 33.333 12.94 0.00 0.00 2.92
554 565 8.258708 AGACTTAACTGTTAAATCTAAGCCGAT 58.741 33.333 19.29 0.00 30.67 4.18
555 566 7.609056 AGACTTAACTGTTAAATCTAAGCCGA 58.391 34.615 19.29 0.00 30.67 5.54
556 567 7.829378 AGACTTAACTGTTAAATCTAAGCCG 57.171 36.000 19.29 5.86 30.67 5.52
557 568 9.096160 GGTAGACTTAACTGTTAAATCTAAGCC 57.904 37.037 24.62 20.07 36.20 4.35
558 569 9.649167 TGGTAGACTTAACTGTTAAATCTAAGC 57.351 33.333 24.62 19.33 36.20 3.09
562 573 9.708092 GTCTTGGTAGACTTAACTGTTAAATCT 57.292 33.333 22.79 22.79 45.99 2.40
577 588 3.685272 GCCTTTGCTAAGTCTTGGTAGAC 59.315 47.826 7.14 0.00 41.89 2.59
578 589 3.939066 GCCTTTGCTAAGTCTTGGTAGA 58.061 45.455 7.14 0.00 33.53 2.59
592 603 5.006649 ACGAATTTTCTTTTTCAGCCTTTGC 59.993 36.000 0.00 0.00 37.95 3.68
593 604 6.588348 ACGAATTTTCTTTTTCAGCCTTTG 57.412 33.333 0.00 0.00 0.00 2.77
594 605 6.593770 ACAACGAATTTTCTTTTTCAGCCTTT 59.406 30.769 0.00 0.00 0.00 3.11
595 606 6.106003 ACAACGAATTTTCTTTTTCAGCCTT 58.894 32.000 0.00 0.00 0.00 4.35
596 607 5.660460 ACAACGAATTTTCTTTTTCAGCCT 58.340 33.333 0.00 0.00 0.00 4.58
597 608 5.966636 ACAACGAATTTTCTTTTTCAGCC 57.033 34.783 0.00 0.00 0.00 4.85
598 609 6.988329 TCAACAACGAATTTTCTTTTTCAGC 58.012 32.000 0.00 0.00 0.00 4.26
599 610 9.971744 AAATCAACAACGAATTTTCTTTTTCAG 57.028 25.926 0.00 0.00 0.00 3.02
607 618 7.397970 TGCTCAAAAATCAACAACGAATTTTC 58.602 30.769 0.00 0.00 27.92 2.29
612 623 5.406649 AGTTGCTCAAAAATCAACAACGAA 58.593 33.333 7.03 0.00 41.67 3.85
632 643 9.136952 CGTGCTACAAGAATTAGTTAGTTAGTT 57.863 33.333 0.00 0.00 0.00 2.24
720 743 1.472480 GAGTGCTCTGTCTCTGTCCTC 59.528 57.143 0.00 0.00 0.00 3.71
807 830 3.636231 GGGGTTTGGGCTTTGGGC 61.636 66.667 0.00 0.00 40.90 5.36
834 882 1.588082 CTGTGGCTGTGGAAATGGC 59.412 57.895 0.00 0.00 0.00 4.40
840 892 1.455849 CTTTCCCTGTGGCTGTGGA 59.544 57.895 0.00 0.00 0.00 4.02
846 898 0.601046 GCTTTTGCTTTCCCTGTGGC 60.601 55.000 0.00 0.00 43.35 5.01
954 1033 3.984193 ATGGTTGCTCTGCCGCTCC 62.984 63.158 0.00 0.00 0.00 4.70
955 1034 2.437359 ATGGTTGCTCTGCCGCTC 60.437 61.111 0.00 0.00 0.00 5.03
956 1035 2.437359 GATGGTTGCTCTGCCGCT 60.437 61.111 0.00 0.00 0.00 5.52
957 1036 1.660560 AATGATGGTTGCTCTGCCGC 61.661 55.000 0.00 0.00 0.00 6.53
958 1037 0.379669 GAATGATGGTTGCTCTGCCG 59.620 55.000 0.00 0.00 0.00 5.69
959 1038 0.743097 GGAATGATGGTTGCTCTGCC 59.257 55.000 0.00 0.00 0.00 4.85
960 1039 1.466856 TGGAATGATGGTTGCTCTGC 58.533 50.000 0.00 0.00 0.00 4.26
961 1040 2.621998 GGATGGAATGATGGTTGCTCTG 59.378 50.000 0.00 0.00 0.00 3.35
962 1041 2.242965 TGGATGGAATGATGGTTGCTCT 59.757 45.455 0.00 0.00 0.00 4.09
963 1042 2.658285 TGGATGGAATGATGGTTGCTC 58.342 47.619 0.00 0.00 0.00 4.26
964 1043 2.832643 TGGATGGAATGATGGTTGCT 57.167 45.000 0.00 0.00 0.00 3.91
965 1044 2.298163 GGATGGATGGAATGATGGTTGC 59.702 50.000 0.00 0.00 0.00 4.17
966 1045 3.568443 TGGATGGATGGAATGATGGTTG 58.432 45.455 0.00 0.00 0.00 3.77
1027 1106 2.072298 GAGCAAGACAAGCACTAGTGG 58.928 52.381 23.95 10.27 0.00 4.00
1105 1184 3.812019 CGTCCAGTCGGAGTCGGG 61.812 72.222 0.00 0.00 43.99 5.14
1114 1193 3.117171 CTGCTGCTGCGTCCAGTC 61.117 66.667 11.21 0.00 43.34 3.51
1261 1343 3.735029 GAGCGAGACGACGGTGGT 61.735 66.667 0.00 0.00 43.81 4.16
1262 1344 4.813526 CGAGCGAGACGACGGTGG 62.814 72.222 0.00 6.17 43.81 4.61
1419 1501 2.104792 CTGGTTGTTGGAGAGGTTGAGA 59.895 50.000 0.00 0.00 0.00 3.27
1540 1622 4.101448 CCTGGCCGGCAGCTTACT 62.101 66.667 30.85 0.00 43.05 2.24
1773 1855 2.039624 AGGTGGACGAGGCTGGAT 59.960 61.111 2.65 0.00 0.00 3.41
1774 1856 2.680352 GAGGTGGACGAGGCTGGA 60.680 66.667 2.65 0.00 0.00 3.86
2364 2446 1.814772 AGTTGCTCTGCAGCTCGACT 61.815 55.000 9.47 14.50 46.49 4.18
2424 2506 2.738000 CGACAGCATCTTCCTCTCCTTG 60.738 54.545 0.00 0.00 0.00 3.61
2820 2905 1.663702 CGACAGGTCGTTGTGGGAC 60.664 63.158 13.35 0.00 46.99 4.46
3743 3865 1.347320 GTAGCAGTAGAACGTGTGGC 58.653 55.000 0.00 0.00 0.00 5.01
3744 3866 1.271379 TGGTAGCAGTAGAACGTGTGG 59.729 52.381 0.00 0.00 0.00 4.17
3747 3869 3.299340 AAGTGGTAGCAGTAGAACGTG 57.701 47.619 1.99 0.00 0.00 4.49
3782 3904 8.502387 CAAATTCAAACAGTGGAAAGTTCAAAA 58.498 29.630 0.00 0.00 0.00 2.44
3784 3906 7.382110 TCAAATTCAAACAGTGGAAAGTTCAA 58.618 30.769 0.00 0.00 0.00 2.69
3787 3909 7.201635 GCATTCAAATTCAAACAGTGGAAAGTT 60.202 33.333 0.00 0.00 0.00 2.66
3788 3910 6.258507 GCATTCAAATTCAAACAGTGGAAAGT 59.741 34.615 0.00 0.00 0.00 2.66
3789 3911 6.480981 AGCATTCAAATTCAAACAGTGGAAAG 59.519 34.615 0.00 0.00 0.00 2.62
3792 3914 5.068855 TGAGCATTCAAATTCAAACAGTGGA 59.931 36.000 0.00 0.00 0.00 4.02
3794 3916 5.981315 AGTGAGCATTCAAATTCAAACAGTG 59.019 36.000 0.00 0.00 34.49 3.66
3795 3917 6.152932 AGTGAGCATTCAAATTCAAACAGT 57.847 33.333 0.00 0.00 34.49 3.55
3796 3918 6.477688 ACAAGTGAGCATTCAAATTCAAACAG 59.522 34.615 0.00 0.00 34.49 3.16
3797 3919 6.339730 ACAAGTGAGCATTCAAATTCAAACA 58.660 32.000 0.00 0.00 34.49 2.83
3798 3920 6.345250 CGACAAGTGAGCATTCAAATTCAAAC 60.345 38.462 0.00 0.00 34.49 2.93
3799 3921 5.686841 CGACAAGTGAGCATTCAAATTCAAA 59.313 36.000 0.00 0.00 34.49 2.69
3800 3922 5.008514 TCGACAAGTGAGCATTCAAATTCAA 59.991 36.000 0.00 0.00 34.49 2.69
3803 3925 5.181811 TGATCGACAAGTGAGCATTCAAATT 59.818 36.000 0.00 0.00 34.49 1.82
3804 3926 4.696877 TGATCGACAAGTGAGCATTCAAAT 59.303 37.500 0.00 0.00 34.49 2.32
3805 3927 4.064388 TGATCGACAAGTGAGCATTCAAA 58.936 39.130 0.00 0.00 34.49 2.69
3809 3931 5.633830 AATTTGATCGACAAGTGAGCATT 57.366 34.783 0.00 0.00 39.77 3.56
3810 3932 5.396484 CAAATTTGATCGACAAGTGAGCAT 58.604 37.500 13.08 0.00 39.77 3.79
3835 4230 0.620556 AATCGAGGCACCTTCACCAT 59.379 50.000 0.00 0.00 0.00 3.55
3837 4232 0.250513 AGAATCGAGGCACCTTCACC 59.749 55.000 0.00 0.00 0.00 4.02
3838 4233 2.166664 AGTAGAATCGAGGCACCTTCAC 59.833 50.000 0.00 0.00 0.00 3.18
3839 4234 2.166459 CAGTAGAATCGAGGCACCTTCA 59.834 50.000 0.00 0.00 0.00 3.02
3840 4235 2.166664 ACAGTAGAATCGAGGCACCTTC 59.833 50.000 0.00 0.00 0.00 3.46
3841 4236 2.180276 ACAGTAGAATCGAGGCACCTT 58.820 47.619 0.00 0.00 0.00 3.50
3842 4237 1.853963 ACAGTAGAATCGAGGCACCT 58.146 50.000 0.00 0.00 0.00 4.00
3844 4239 3.628487 AGACTACAGTAGAATCGAGGCAC 59.372 47.826 14.94 0.00 0.00 5.01
3845 4240 3.887352 AGACTACAGTAGAATCGAGGCA 58.113 45.455 14.94 0.00 0.00 4.75
3846 4241 5.058490 ACTAGACTACAGTAGAATCGAGGC 58.942 45.833 14.94 0.00 0.00 4.70
3847 4242 5.697633 GGACTAGACTACAGTAGAATCGAGG 59.302 48.000 14.94 1.82 0.00 4.63
3851 4246 7.209475 ACGTAGGACTAGACTACAGTAGAATC 58.791 42.308 14.94 2.44 40.58 2.52
3852 4247 7.123355 ACGTAGGACTAGACTACAGTAGAAT 57.877 40.000 14.94 4.75 40.58 2.40
3864 4259 2.540515 CGTACCGAACGTAGGACTAGA 58.459 52.381 15.81 0.00 46.72 2.43
3899 5814 1.298157 TACATTGGACGCAGCAGCAC 61.298 55.000 0.82 0.00 42.27 4.40
3919 5834 3.128242 ACGGACTCGACCAACATAGTAAG 59.872 47.826 0.00 0.00 40.11 2.34
3920 5835 3.084039 ACGGACTCGACCAACATAGTAA 58.916 45.455 0.00 0.00 40.11 2.24
3921 5836 2.715046 ACGGACTCGACCAACATAGTA 58.285 47.619 0.00 0.00 40.11 1.82
3922 5837 1.542492 ACGGACTCGACCAACATAGT 58.458 50.000 0.00 0.00 40.11 2.12
3924 5839 1.067425 CCAACGGACTCGACCAACATA 60.067 52.381 0.00 0.00 40.11 2.29
3973 6158 0.178938 TGCATGCCTTCCCCTCAAAA 60.179 50.000 16.68 0.00 0.00 2.44
3979 6164 1.470996 TTGTGTTGCATGCCTTCCCC 61.471 55.000 16.68 0.00 0.00 4.81
3981 6166 0.668401 GCTTGTGTTGCATGCCTTCC 60.668 55.000 16.68 1.19 40.95 3.46
4025 6210 4.708909 TCGGCAGCATCTATCTATGAATCT 59.291 41.667 0.00 0.00 0.00 2.40
4026 6211 5.003692 TCGGCAGCATCTATCTATGAATC 57.996 43.478 0.00 0.00 0.00 2.52
4029 6214 3.425659 ACTCGGCAGCATCTATCTATGA 58.574 45.455 0.00 0.00 0.00 2.15
4030 6215 3.443329 AGACTCGGCAGCATCTATCTATG 59.557 47.826 0.00 0.00 0.00 2.23
4038 6223 1.160137 AACAAAGACTCGGCAGCATC 58.840 50.000 0.00 0.00 0.00 3.91
4055 6268 6.508777 AGTCACAGTAGACAGAGAAAGAAAC 58.491 40.000 0.00 0.00 40.98 2.78
4071 6284 0.032678 CAACAGAGCCGAGTCACAGT 59.967 55.000 0.00 0.00 0.00 3.55
4074 6287 0.315568 ACTCAACAGAGCCGAGTCAC 59.684 55.000 0.00 0.00 35.02 3.67
4077 6290 0.034059 CCAACTCAACAGAGCCGAGT 59.966 55.000 0.00 0.00 41.70 4.18
4118 6331 0.034186 TGGTCCATGGTCCATGAAGC 60.034 55.000 30.14 21.92 43.81 3.86
4119 6332 2.742428 ATGGTCCATGGTCCATGAAG 57.258 50.000 34.18 16.10 43.81 3.02
4149 6372 1.628340 TCTCCAACATTCATCCACGGT 59.372 47.619 0.00 0.00 0.00 4.83
4151 6374 1.667724 GCTCTCCAACATTCATCCACG 59.332 52.381 0.00 0.00 0.00 4.94
4152 6375 1.667724 CGCTCTCCAACATTCATCCAC 59.332 52.381 0.00 0.00 0.00 4.02
4156 6379 2.234661 TCACTCGCTCTCCAACATTCAT 59.765 45.455 0.00 0.00 0.00 2.57
4157 6380 1.618343 TCACTCGCTCTCCAACATTCA 59.382 47.619 0.00 0.00 0.00 2.57
4158 6381 2.370281 TCACTCGCTCTCCAACATTC 57.630 50.000 0.00 0.00 0.00 2.67
4159 6382 2.234661 TCATCACTCGCTCTCCAACATT 59.765 45.455 0.00 0.00 0.00 2.71
4184 6420 6.663734 TCCTTGTCTCTTTCTTTCTTCCTTT 58.336 36.000 0.00 0.00 0.00 3.11
4188 6424 7.793927 TCTTTCCTTGTCTCTTTCTTTCTTC 57.206 36.000 0.00 0.00 0.00 2.87
4190 6426 8.049721 TCTTTCTTTCCTTGTCTCTTTCTTTCT 58.950 33.333 0.00 0.00 0.00 2.52
4191 6427 8.214721 TCTTTCTTTCCTTGTCTCTTTCTTTC 57.785 34.615 0.00 0.00 0.00 2.62
4192 6428 8.759481 ATCTTTCTTTCCTTGTCTCTTTCTTT 57.241 30.769 0.00 0.00 0.00 2.52
4193 6429 8.217111 AGATCTTTCTTTCCTTGTCTCTTTCTT 58.783 33.333 0.00 0.00 0.00 2.52
4194 6430 7.661027 CAGATCTTTCTTTCCTTGTCTCTTTCT 59.339 37.037 0.00 0.00 0.00 2.52
4280 6528 6.488086 GAGTATTCTACTGGCAAGCATGCAT 61.488 44.000 21.98 4.57 46.46 3.96
4281 6529 5.218030 GAGTATTCTACTGGCAAGCATGCA 61.218 45.833 21.98 0.00 46.46 3.96
4282 6530 3.249559 GAGTATTCTACTGGCAAGCATGC 59.750 47.826 10.51 10.51 45.04 4.06
4318 6569 0.388134 TTGTTGTACTCGCCTCGCTC 60.388 55.000 0.00 0.00 0.00 5.03
4319 6570 0.032952 TTTGTTGTACTCGCCTCGCT 59.967 50.000 0.00 0.00 0.00 4.93
4320 6571 0.163146 GTTTGTTGTACTCGCCTCGC 59.837 55.000 0.00 0.00 0.00 5.03
4322 6573 1.191647 CGTGTTTGTTGTACTCGCCTC 59.808 52.381 0.00 0.00 0.00 4.70
4323 6574 1.214367 CGTGTTTGTTGTACTCGCCT 58.786 50.000 0.00 0.00 0.00 5.52
4324 6575 0.932399 ACGTGTTTGTTGTACTCGCC 59.068 50.000 0.00 0.00 36.33 5.54
4325 6576 1.914257 GCACGTGTTTGTTGTACTCGC 60.914 52.381 18.38 0.00 36.33 5.03
4326 6577 1.325037 TGCACGTGTTTGTTGTACTCG 59.675 47.619 18.38 0.00 38.17 4.18
4378 6709 2.034179 TCCGACCATGCATAAGTAGACG 59.966 50.000 0.00 0.52 0.00 4.18
4380 6711 3.490249 CGTTCCGACCATGCATAAGTAGA 60.490 47.826 0.00 0.00 0.00 2.59
4384 6724 0.304705 GCGTTCCGACCATGCATAAG 59.695 55.000 0.00 0.00 0.00 1.73
4407 6752 1.062148 GATCGATCCGCATGCATGATG 59.938 52.381 30.64 19.99 34.84 3.07
4408 6753 1.366679 GATCGATCCGCATGCATGAT 58.633 50.000 30.64 18.15 0.00 2.45
4447 6831 5.968254 ACTAGAGAGAGATATGCATGCATG 58.032 41.667 37.43 22.70 37.82 4.06
4448 6832 7.781219 AGATACTAGAGAGAGATATGCATGCAT 59.219 37.037 33.92 33.92 40.19 3.96
4449 6833 7.118060 AGATACTAGAGAGAGATATGCATGCA 58.882 38.462 25.04 25.04 0.00 3.96
4450 6834 7.500227 AGAGATACTAGAGAGAGATATGCATGC 59.500 40.741 11.82 11.82 0.00 4.06
4451 6835 8.969260 AGAGATACTAGAGAGAGATATGCATG 57.031 38.462 10.16 0.00 0.00 4.06
4452 6836 8.996655 AGAGAGATACTAGAGAGAGATATGCAT 58.003 37.037 3.79 3.79 0.00 3.96
4453 6837 8.379428 AGAGAGATACTAGAGAGAGATATGCA 57.621 38.462 0.00 0.00 0.00 3.96
4461 6845 8.967918 GCTGTAGATAGAGAGATACTAGAGAGA 58.032 40.741 0.00 0.00 29.79 3.10
4462 6846 8.749354 TGCTGTAGATAGAGAGATACTAGAGAG 58.251 40.741 0.00 0.00 29.79 3.20
4463 6847 8.658840 TGCTGTAGATAGAGAGATACTAGAGA 57.341 38.462 0.00 0.00 29.79 3.10
4464 6848 7.492669 GCTGCTGTAGATAGAGAGATACTAGAG 59.507 44.444 0.00 0.00 0.00 2.43
4465 6849 7.180229 AGCTGCTGTAGATAGAGAGATACTAGA 59.820 40.741 0.00 0.00 0.00 2.43
4466 6850 7.331026 AGCTGCTGTAGATAGAGAGATACTAG 58.669 42.308 0.00 0.00 0.00 2.57
4467 6851 7.252612 AGCTGCTGTAGATAGAGAGATACTA 57.747 40.000 0.00 0.00 0.00 1.82
4468 6852 6.126863 AGCTGCTGTAGATAGAGAGATACT 57.873 41.667 0.00 0.00 0.00 2.12
4469 6853 7.103641 AGTAGCTGCTGTAGATAGAGAGATAC 58.896 42.308 13.43 0.00 0.00 2.24
4470 6854 7.252612 AGTAGCTGCTGTAGATAGAGAGATA 57.747 40.000 13.43 0.00 0.00 1.98
4471 6855 6.126863 AGTAGCTGCTGTAGATAGAGAGAT 57.873 41.667 13.43 0.00 0.00 2.75
4480 6864 6.040616 GGTAATTTCCTAGTAGCTGCTGTAGA 59.959 42.308 15.31 5.43 0.00 2.59
4484 6868 5.023533 TGGTAATTTCCTAGTAGCTGCTG 57.976 43.478 15.31 4.54 0.00 4.41
4487 6871 4.141711 TGGCTGGTAATTTCCTAGTAGCTG 60.142 45.833 9.89 0.00 0.00 4.24
4509 6893 1.005275 ATGATCGATGCCGGAGCTG 60.005 57.895 5.05 0.00 40.80 4.24
4513 6897 2.650778 CGGATGATCGATGCCGGA 59.349 61.111 18.27 0.00 40.08 5.14
4516 6900 2.743928 GGCCGGATGATCGATGCC 60.744 66.667 5.05 4.24 32.30 4.40
4526 6910 4.541648 AGCTAGACCCGGCCGGAT 62.542 66.667 45.44 33.79 37.50 4.18
4557 6941 7.327761 GTCTAAAGTAAACTACGCATGACAGAA 59.672 37.037 0.00 0.00 0.00 3.02
4614 7001 4.836825 ACTACGTAGTGTAAGTAGCAGGA 58.163 43.478 26.87 0.00 45.73 3.86
4615 7002 5.236047 CCTACTACGTAGTGTAAGTAGCAGG 59.764 48.000 33.23 24.33 43.18 4.85
4616 7003 6.045318 TCCTACTACGTAGTGTAAGTAGCAG 58.955 44.000 33.23 20.23 45.73 4.24
4617 7004 5.977635 TCCTACTACGTAGTGTAAGTAGCA 58.022 41.667 33.23 12.74 45.73 3.49
4618 7005 6.045955 ACTCCTACTACGTAGTGTAAGTAGC 58.954 44.000 33.23 0.00 45.73 3.58
4619 7006 7.381139 GCTACTCCTACTACGTAGTGTAAGTAG 59.619 44.444 34.95 34.95 45.73 2.57
4620 7007 7.147897 TGCTACTCCTACTACGTAGTGTAAGTA 60.148 40.741 33.23 29.20 45.73 2.24
4621 7008 6.045955 GCTACTCCTACTACGTAGTGTAAGT 58.954 44.000 33.23 29.55 45.73 2.24
4622 7009 6.019156 GTGCTACTCCTACTACGTAGTGTAAG 60.019 46.154 33.23 26.50 45.73 2.34
4623 7010 5.812642 GTGCTACTCCTACTACGTAGTGTAA 59.187 44.000 33.23 16.17 45.73 2.41
4624 7011 5.127845 AGTGCTACTCCTACTACGTAGTGTA 59.872 44.000 33.23 24.52 45.73 2.90
4625 7012 4.081198 AGTGCTACTCCTACTACGTAGTGT 60.081 45.833 33.23 24.70 45.73 3.55
4626 7013 4.440880 AGTGCTACTCCTACTACGTAGTG 58.559 47.826 33.23 22.90 45.73 2.74
4628 7015 6.256686 CAAAAGTGCTACTCCTACTACGTAG 58.743 44.000 20.97 20.97 36.04 3.51
4629 7016 6.187125 CAAAAGTGCTACTCCTACTACGTA 57.813 41.667 0.00 0.00 0.00 3.57
4630 7017 5.056894 CAAAAGTGCTACTCCTACTACGT 57.943 43.478 0.00 0.00 0.00 3.57
4663 7052 3.258372 AGGTTCGATCAGTCTTTGCAGTA 59.742 43.478 0.00 0.00 0.00 2.74
4664 7053 2.037772 AGGTTCGATCAGTCTTTGCAGT 59.962 45.455 0.00 0.00 0.00 4.40
4665 7054 2.693069 AGGTTCGATCAGTCTTTGCAG 58.307 47.619 0.00 0.00 0.00 4.41
4693 7100 6.808212 TCATGCCACGTACTTTACTTTACTAC 59.192 38.462 0.00 0.00 0.00 2.73
4760 7177 2.726241 GCAATTGAACAACGGAAAGCTC 59.274 45.455 10.34 0.00 0.00 4.09
4767 7184 2.973224 CTCGAAAGCAATTGAACAACGG 59.027 45.455 10.34 0.00 0.00 4.44
4768 7185 2.973224 CCTCGAAAGCAATTGAACAACG 59.027 45.455 10.34 7.75 0.00 4.10
4769 7186 4.223320 TCCTCGAAAGCAATTGAACAAC 57.777 40.909 10.34 0.00 0.00 3.32
4770 7187 4.378356 CGATCCTCGAAAGCAATTGAACAA 60.378 41.667 10.34 0.00 43.74 2.83
4788 7205 5.776173 TCTCTCTAGGATTGTTTCGATCC 57.224 43.478 7.69 7.69 43.07 3.36
4795 7212 6.024563 TCTCTGGATCTCTCTAGGATTGTT 57.975 41.667 0.00 0.00 31.23 2.83
4796 7213 5.372363 TCTCTCTGGATCTCTCTAGGATTGT 59.628 44.000 0.00 0.00 31.23 2.71
4797 7214 5.879763 TCTCTCTGGATCTCTCTAGGATTG 58.120 45.833 0.00 0.00 31.23 2.67
4851 7269 2.318908 AGATGATGGAGAGCTGGACTC 58.681 52.381 0.00 0.00 46.66 3.36
4852 7270 2.475339 AGATGATGGAGAGCTGGACT 57.525 50.000 0.00 0.00 0.00 3.85
4853 7271 3.230134 ACTAGATGATGGAGAGCTGGAC 58.770 50.000 0.00 0.00 0.00 4.02
4854 7272 3.609256 ACTAGATGATGGAGAGCTGGA 57.391 47.619 0.00 0.00 0.00 3.86
4855 7273 4.686191 AAACTAGATGATGGAGAGCTGG 57.314 45.455 0.00 0.00 0.00 4.85
4872 7410 2.171870 TCACGGAGGAAGGACAAAAACT 59.828 45.455 0.00 0.00 0.00 2.66
4906 7444 7.022384 GCACAGTAGAGTGGTATATTCGTATC 58.978 42.308 0.00 0.00 39.87 2.24
4924 7462 3.320826 AGTGTCAGTGTACATGCACAGTA 59.679 43.478 6.08 0.00 41.52 2.74
4928 7466 2.733552 CTCAGTGTCAGTGTACATGCAC 59.266 50.000 7.54 10.54 39.51 4.57
4931 7469 4.022849 TCAGTCTCAGTGTCAGTGTACATG 60.023 45.833 7.54 0.00 0.00 3.21
4949 7487 3.062639 CCATACGAGTTGCATTGTCAGTC 59.937 47.826 0.00 0.00 0.00 3.51
4960 7498 1.311859 ATGCCATGCCATACGAGTTG 58.688 50.000 0.00 0.00 0.00 3.16
4964 7502 0.385029 GCAAATGCCATGCCATACGA 59.615 50.000 0.00 0.00 37.85 3.43
4966 7504 1.409790 TCTGCAAATGCCATGCCATAC 59.590 47.619 2.46 0.00 43.16 2.39
4967 7505 1.684450 CTCTGCAAATGCCATGCCATA 59.316 47.619 2.46 0.00 43.16 2.74
5231 7778 2.974148 CTGCTCCTGCACGCACAA 60.974 61.111 0.00 0.00 45.31 3.33
5272 7819 1.153549 GAGCATGTGGACGACCTCC 60.154 63.158 5.33 0.00 39.97 4.30
5320 7867 4.135153 CCTCGGAGGTCGTGCAGG 62.135 72.222 16.15 0.00 40.32 4.85
5331 7881 3.224324 GTATGGCGCCTCCTCGGA 61.224 66.667 29.70 5.17 35.26 4.55
5332 7882 4.301027 GGTATGGCGCCTCCTCGG 62.301 72.222 29.70 0.00 35.26 4.63
5338 7888 0.036010 GATGCATAGGTATGGCGCCT 60.036 55.000 29.70 15.76 40.00 5.52
5339 7889 1.026718 GGATGCATAGGTATGGCGCC 61.027 60.000 22.73 22.73 34.32 6.53
5355 7905 1.749638 GCAGCAGCAGCAGAAGGAT 60.750 57.895 4.63 0.00 45.49 3.24
5360 7910 3.999948 ACGAGCAGCAGCAGCAGA 62.000 61.111 12.92 0.00 45.49 4.26
5455 8005 0.302890 GCTCCTGCGACATTCATTCG 59.697 55.000 0.00 0.00 39.56 3.34
5461 8011 0.251354 ATCACAGCTCCTGCGACATT 59.749 50.000 0.00 0.00 45.42 2.71
5546 8114 3.279950 GTGCATGCATGAATACGTTACG 58.720 45.455 30.64 2.19 0.00 3.18
5548 8116 3.312146 CAGGTGCATGCATGAATACGTTA 59.688 43.478 30.64 2.45 0.00 3.18
5549 8117 2.097954 CAGGTGCATGCATGAATACGTT 59.902 45.455 30.64 13.10 0.00 3.99
5550 8118 1.672363 CAGGTGCATGCATGAATACGT 59.328 47.619 30.64 20.95 0.00 3.57
5551 8119 1.672363 ACAGGTGCATGCATGAATACG 59.328 47.619 30.64 16.17 0.00 3.06
5552 8120 3.003689 GGTACAGGTGCATGCATGAATAC 59.996 47.826 30.64 22.18 0.00 1.89
5553 8121 3.213506 GGTACAGGTGCATGCATGAATA 58.786 45.455 30.64 12.42 0.00 1.75
5554 8122 2.026641 GGTACAGGTGCATGCATGAAT 58.973 47.619 30.64 12.78 0.00 2.57
5555 8123 1.462616 GGTACAGGTGCATGCATGAA 58.537 50.000 30.64 18.49 0.00 2.57
5556 8124 0.744057 CGGTACAGGTGCATGCATGA 60.744 55.000 30.64 12.48 0.00 3.07
5599 8171 3.489277 GACACCGACCCGACACGTT 62.489 63.158 0.00 0.00 0.00 3.99
5635 8207 2.753043 CACAGGAGGGCCATGCAC 60.753 66.667 12.68 0.00 36.29 4.57
5699 8314 5.970592 TGCATTTCCTATGGATCTATCGAG 58.029 41.667 0.00 0.00 0.00 4.04
5702 8317 8.571461 TTGATTGCATTTCCTATGGATCTATC 57.429 34.615 0.00 0.00 0.00 2.08
5741 8356 2.939022 GTGTTGCGCAGGTCAGAC 59.061 61.111 11.31 5.29 0.00 3.51
5742 8357 2.661537 CGTGTTGCGCAGGTCAGA 60.662 61.111 11.31 0.00 0.00 3.27
5761 8379 3.763360 AGGAGACAATCTCTCACTCACTG 59.237 47.826 5.84 0.00 46.81 3.66
5762 8380 3.763360 CAGGAGACAATCTCTCACTCACT 59.237 47.826 5.84 0.00 46.81 3.41
5763 8381 3.675775 GCAGGAGACAATCTCTCACTCAC 60.676 52.174 5.84 0.00 46.81 3.51
5764 8382 2.495270 GCAGGAGACAATCTCTCACTCA 59.505 50.000 5.84 0.00 46.81 3.41
5830 8468 3.439476 GCGACTAAGTCCTGACACTAAGA 59.561 47.826 0.00 0.00 0.00 2.10
5954 8593 4.310022 TTTTACCGGATGATGTTTCCCT 57.690 40.909 9.46 0.00 0.00 4.20
6027 8677 1.903183 GGGCTAGACACAAAGAGGAGT 59.097 52.381 0.00 0.00 0.00 3.85
6119 8773 1.451387 CTCCACATGTAACCCGCCC 60.451 63.158 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.