Multiple sequence alignment - TraesCS1A01G443500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G443500 chr1A 100.000 2755 0 0 1 2755 591949274 591946520 0.000000e+00 5088.0
1 TraesCS1A01G443500 chr1A 99.398 166 1 0 2530 2695 591946685 591946520 4.810000e-78 302.0
2 TraesCS1A01G443500 chr1A 99.398 166 1 0 2590 2755 591946745 591946580 4.810000e-78 302.0
3 TraesCS1A01G443500 chr1A 100.000 112 0 0 2856 2967 591946419 591946308 1.080000e-49 207.0
4 TraesCS1A01G443500 chr1A 99.057 106 1 0 2530 2635 591946625 591946520 1.090000e-44 191.0
5 TraesCS1A01G443500 chr1A 99.057 106 1 0 2650 2755 591946745 591946640 1.090000e-44 191.0
6 TraesCS1A01G443500 chr1A 100.000 91 0 0 2619 2709 591946419 591946329 5.090000e-38 169.0
7 TraesCS1A01G443500 chr1A 100.000 91 0 0 2856 2946 591946656 591946566 5.090000e-38 169.0
8 TraesCS1A01G443500 chr1A 98.901 91 1 0 2559 2649 591946419 591946329 2.370000e-36 163.0
9 TraesCS1A01G443500 chr1A 98.901 91 1 0 2856 2946 591946716 591946626 2.370000e-36 163.0
10 TraesCS1A01G443500 chr1A 100.000 77 0 0 2679 2755 591946419 591946343 3.080000e-30 143.0
11 TraesCS1A01G443500 chr1A 100.000 77 0 0 2856 2932 591946596 591946520 3.080000e-30 143.0
12 TraesCS1A01G443500 chr1A 98.333 60 1 0 2530 2589 591946388 591946329 4.040000e-19 106.0
13 TraesCS1A01G443500 chr1A 98.333 60 1 0 2887 2946 591946745 591946686 4.040000e-19 106.0
14 TraesCS1A01G443500 chr1A 100.000 44 0 0 2530 2573 591946565 591946522 6.820000e-12 82.4
15 TraesCS1A01G443500 chr1A 100.000 44 0 0 2710 2753 591946745 591946702 6.820000e-12 82.4
16 TraesCS1A01G443500 chr1A 86.441 59 3 5 2026 2082 99183072 99183127 3.190000e-05 60.2
17 TraesCS1A01G443500 chr1A 100.000 31 0 0 2856 2886 591946359 591946329 1.150000e-04 58.4
18 TraesCS1A01G443500 chr1A 100.000 31 0 0 2916 2946 591946419 591946389 1.150000e-04 58.4
19 TraesCS1A01G443500 chr1D 90.516 1202 51 33 780 1956 493703912 493702749 0.000000e+00 1530.0
20 TraesCS1A01G443500 chr1D 93.267 401 27 0 1556 1956 493701618 493701218 2.550000e-165 592.0
21 TraesCS1A01G443500 chr1D 94.722 360 12 1 1 360 493705641 493705289 1.200000e-153 553.0
22 TraesCS1A01G443500 chr1D 98.524 271 4 0 1556 1826 493684154 493683884 2.070000e-131 479.0
23 TraesCS1A01G443500 chr1D 91.045 67 2 1 2361 2423 493683592 493683526 1.470000e-13 87.9
24 TraesCS1A01G443500 chr1D 86.420 81 2 5 2892 2967 103327180 103327104 2.450000e-11 80.5
25 TraesCS1A01G443500 chr1B 94.084 862 40 7 1101 1956 686747879 686747023 0.000000e+00 1299.0
26 TraesCS1A01G443500 chr1B 92.778 360 12 3 1 360 686750083 686749738 2.640000e-140 508.0
27 TraesCS1A01G443500 chr1B 95.954 173 7 0 2002 2174 686747027 686746855 6.260000e-72 281.0
28 TraesCS1A01G443500 chr1B 96.117 103 4 0 2164 2266 686746823 686746721 5.090000e-38 169.0
29 TraesCS1A01G443500 chr1B 100.000 30 0 0 1981 2010 332096603 332096574 4.130000e-04 56.5
30 TraesCS1A01G443500 chr5B 98.193 166 3 0 384 549 446576702 446576537 1.040000e-74 291.0
31 TraesCS1A01G443500 chr5B 97.093 172 4 1 378 549 656244958 656245128 3.740000e-74 289.0
32 TraesCS1A01G443500 chr5B 96.023 176 6 1 378 553 549420000 549420174 4.840000e-73 285.0
33 TraesCS1A01G443500 chr5B 96.023 176 6 1 378 553 549445644 549445818 4.840000e-73 285.0
34 TraesCS1A01G443500 chr5B 96.491 171 6 0 379 549 396856583 396856753 1.740000e-72 283.0
35 TraesCS1A01G443500 chr5B 94.444 36 0 2 1975 2008 418466874 418466839 1.000000e-03 54.7
36 TraesCS1A01G443500 chr7A 97.076 171 4 1 380 549 486649169 486649339 1.350000e-73 287.0
37 TraesCS1A01G443500 chr7A 96.532 173 5 1 383 554 589994216 589994044 4.840000e-73 285.0
38 TraesCS1A01G443500 chr7A 96.774 31 1 0 1950 1980 724519993 724519963 5.000000e-03 52.8
39 TraesCS1A01G443500 chr2A 93.717 191 7 5 362 552 603083429 603083614 6.260000e-72 281.0
40 TraesCS1A01G443500 chr3B 94.444 180 9 1 370 549 306557381 306557559 2.910000e-70 276.0
41 TraesCS1A01G443500 chr3B 92.000 50 2 2 2035 2082 476524393 476524344 5.310000e-08 69.4
42 TraesCS1A01G443500 chr4D 76.806 263 50 7 1688 1940 97385961 97386222 1.430000e-28 137.0
43 TraesCS1A01G443500 chr4A 76.692 266 51 7 1688 1943 478746796 478746532 1.430000e-28 137.0
44 TraesCS1A01G443500 chr4A 100.000 32 0 0 1950 1981 570237435 570237404 3.190000e-05 60.2
45 TraesCS1A01G443500 chr4A 86.207 58 3 5 2027 2082 19660251 19660305 1.150000e-04 58.4
46 TraesCS1A01G443500 chr4B 77.447 235 42 7 1716 1940 139134861 139135094 2.400000e-26 130.0
47 TraesCS1A01G443500 chr4B 86.667 60 3 5 2025 2082 578094769 578094825 8.880000e-06 62.1
48 TraesCS1A01G443500 chr4B 94.595 37 0 2 1975 2009 70256664 70256628 4.130000e-04 56.5
49 TraesCS1A01G443500 chr7D 84.615 65 4 6 2020 2082 361747029 361747089 3.190000e-05 60.2
50 TraesCS1A01G443500 chr2D 86.441 59 3 5 2026 2082 629532573 629532518 3.190000e-05 60.2
51 TraesCS1A01G443500 chr6D 86.207 58 3 5 2027 2082 410110900 410110846 1.150000e-04 58.4
52 TraesCS1A01G443500 chr3D 89.583 48 2 3 2027 2074 328514848 328514892 1.150000e-04 58.4
53 TraesCS1A01G443500 chr6B 100.000 28 0 0 1954 1981 24799123 24799150 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G443500 chr1A 591946308 591949274 2966 True 429.144444 5088 99.52100 1 2967 18 chr1A.!!$R1 2966
1 TraesCS1A01G443500 chr1D 493701218 493705641 4423 True 891.666667 1530 92.83500 1 1956 3 chr1D.!!$R3 1955
2 TraesCS1A01G443500 chr1D 493683526 493684154 628 True 283.450000 479 94.78450 1556 2423 2 chr1D.!!$R2 867
3 TraesCS1A01G443500 chr1B 686746721 686750083 3362 True 564.250000 1299 94.73325 1 2266 4 chr1B.!!$R2 2265

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 586 0.397941 CTGTTGGGGAGCAGAGACAA 59.602 55.0 0.0 0.0 34.87 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2400 4943 0.034767 CCTCAATGAGCAAGCCCTCA 60.035 55.0 4.4 2.33 45.16 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 7.496920 TGTTATGTTTTTGTTGGCATTTCATCA 59.503 29.630 0.00 0.00 0.00 3.07
160 161 8.686334 AGTAGAGAAGAAGATGAAGATGAAGAC 58.314 37.037 0.00 0.00 0.00 3.01
161 162 7.479352 AGAGAAGAAGATGAAGATGAAGACA 57.521 36.000 0.00 0.00 0.00 3.41
162 163 7.549839 AGAGAAGAAGATGAAGATGAAGACAG 58.450 38.462 0.00 0.00 0.00 3.51
173 174 5.779529 AGATGAAGACAGTGCATTTTGTT 57.220 34.783 0.00 0.00 0.00 2.83
179 180 4.675510 AGACAGTGCATTTTGTTCTTGTG 58.324 39.130 0.00 0.00 0.00 3.33
197 198 3.090790 TGTGGATTGGTTGATGACATGG 58.909 45.455 0.00 0.00 0.00 3.66
198 199 3.245193 TGTGGATTGGTTGATGACATGGA 60.245 43.478 0.00 0.00 0.00 3.41
199 200 3.129287 GTGGATTGGTTGATGACATGGAC 59.871 47.826 0.00 0.00 0.00 4.02
200 201 3.245193 TGGATTGGTTGATGACATGGACA 60.245 43.478 0.00 0.00 0.00 4.02
201 202 3.956199 GGATTGGTTGATGACATGGACAT 59.044 43.478 7.24 7.24 0.00 3.06
202 203 4.202080 GGATTGGTTGATGACATGGACATG 60.202 45.833 10.57 10.57 44.15 3.21
352 353 3.756963 GGGTCCTAAAGTTGTGGATGAAC 59.243 47.826 1.15 0.00 32.03 3.18
360 361 5.948992 AAGTTGTGGATGAACTAAGCTTC 57.051 39.130 0.00 0.00 33.20 3.86
361 362 4.973168 AGTTGTGGATGAACTAAGCTTCA 58.027 39.130 0.00 0.00 31.72 3.02
362 363 5.564550 AGTTGTGGATGAACTAAGCTTCAT 58.435 37.500 0.00 0.00 42.47 2.57
363 364 6.006449 AGTTGTGGATGAACTAAGCTTCATT 58.994 36.000 0.00 0.00 40.33 2.57
364 365 6.491403 AGTTGTGGATGAACTAAGCTTCATTT 59.509 34.615 0.00 0.00 40.33 2.32
365 366 6.500684 TGTGGATGAACTAAGCTTCATTTC 57.499 37.500 0.00 4.95 40.33 2.17
366 367 6.240894 TGTGGATGAACTAAGCTTCATTTCT 58.759 36.000 0.00 0.00 40.33 2.52
367 368 6.372659 TGTGGATGAACTAAGCTTCATTTCTC 59.627 38.462 0.00 4.39 40.33 2.87
368 369 6.597280 GTGGATGAACTAAGCTTCATTTCTCT 59.403 38.462 0.00 0.00 40.33 3.10
369 370 7.120432 GTGGATGAACTAAGCTTCATTTCTCTT 59.880 37.037 0.00 0.00 40.33 2.85
391 392 9.492973 CTCTTGTAGTAGTAAGTATCTACTCCC 57.507 40.741 8.56 3.41 44.39 4.30
393 394 9.492973 CTTGTAGTAGTAAGTATCTACTCCCTC 57.507 40.741 8.56 1.76 44.39 4.30
394 395 7.972301 TGTAGTAGTAAGTATCTACTCCCTCC 58.028 42.308 8.56 0.00 44.39 4.30
395 396 6.112927 AGTAGTAAGTATCTACTCCCTCCG 57.887 45.833 0.00 0.00 42.74 4.63
396 397 5.606329 AGTAGTAAGTATCTACTCCCTCCGT 59.394 44.000 0.00 0.00 42.74 4.69
397 398 5.385628 AGTAAGTATCTACTCCCTCCGTT 57.614 43.478 0.00 0.00 34.99 4.44
398 399 5.375773 AGTAAGTATCTACTCCCTCCGTTC 58.624 45.833 0.00 0.00 34.99 3.95
399 400 3.226682 AGTATCTACTCCCTCCGTTCC 57.773 52.381 0.00 0.00 0.00 3.62
400 401 2.784682 AGTATCTACTCCCTCCGTTCCT 59.215 50.000 0.00 0.00 0.00 3.36
401 402 3.979347 AGTATCTACTCCCTCCGTTCCTA 59.021 47.826 0.00 0.00 0.00 2.94
402 403 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
403 404 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
404 405 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
405 406 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
406 407 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
407 408 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
408 409 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
409 410 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
410 411 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
411 412 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
412 413 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
413 414 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
414 415 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
415 416 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
416 417 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
417 418 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
418 419 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
419 420 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
420 421 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
421 422 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
422 423 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
423 424 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
424 425 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
426 427 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
427 428 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
428 429 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
429 430 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
430 431 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
431 432 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
432 433 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
433 434 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
434 435 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
435 436 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
436 437 3.745975 TCTAGGCATTTCAACAAGTGACG 59.254 43.478 0.00 0.00 35.39 4.35
437 438 2.571212 AGGCATTTCAACAAGTGACGA 58.429 42.857 0.00 0.00 35.39 4.20
438 439 2.290641 AGGCATTTCAACAAGTGACGAC 59.709 45.455 0.00 0.00 35.39 4.34
439 440 2.032799 GGCATTTCAACAAGTGACGACA 59.967 45.455 0.00 0.00 35.39 4.35
440 441 3.304659 GGCATTTCAACAAGTGACGACAT 60.305 43.478 0.00 0.00 35.39 3.06
441 442 4.083537 GGCATTTCAACAAGTGACGACATA 60.084 41.667 0.00 0.00 35.39 2.29
442 443 5.391950 GGCATTTCAACAAGTGACGACATAT 60.392 40.000 0.00 0.00 35.39 1.78
443 444 5.509272 GCATTTCAACAAGTGACGACATATG 59.491 40.000 0.00 0.00 35.39 1.78
444 445 5.605564 TTTCAACAAGTGACGACATATGG 57.394 39.130 7.80 0.00 35.39 2.74
445 446 4.529109 TCAACAAGTGACGACATATGGA 57.471 40.909 7.80 0.00 0.00 3.41
446 447 4.494484 TCAACAAGTGACGACATATGGAG 58.506 43.478 7.80 2.92 0.00 3.86
447 448 2.893637 ACAAGTGACGACATATGGAGC 58.106 47.619 7.80 0.00 0.00 4.70
448 449 2.233676 ACAAGTGACGACATATGGAGCA 59.766 45.455 7.80 0.00 0.00 4.26
449 450 3.261580 CAAGTGACGACATATGGAGCAA 58.738 45.455 7.80 0.00 0.00 3.91
450 451 3.610040 AGTGACGACATATGGAGCAAA 57.390 42.857 7.80 0.00 0.00 3.68
451 452 3.937814 AGTGACGACATATGGAGCAAAA 58.062 40.909 7.80 0.00 0.00 2.44
452 453 4.517285 AGTGACGACATATGGAGCAAAAT 58.483 39.130 7.80 0.00 0.00 1.82
453 454 4.333649 AGTGACGACATATGGAGCAAAATG 59.666 41.667 7.80 0.00 0.00 2.32
454 455 4.332543 GTGACGACATATGGAGCAAAATGA 59.667 41.667 7.80 0.00 0.00 2.57
455 456 4.571984 TGACGACATATGGAGCAAAATGAG 59.428 41.667 7.80 0.00 0.00 2.90
456 457 4.517285 ACGACATATGGAGCAAAATGAGT 58.483 39.130 7.80 0.00 0.00 3.41
457 458 4.333649 ACGACATATGGAGCAAAATGAGTG 59.666 41.667 7.80 0.00 0.00 3.51
458 459 4.571984 CGACATATGGAGCAAAATGAGTGA 59.428 41.667 7.80 0.00 0.00 3.41
459 460 5.065090 CGACATATGGAGCAAAATGAGTGAA 59.935 40.000 7.80 0.00 0.00 3.18
460 461 6.238566 CGACATATGGAGCAAAATGAGTGAAT 60.239 38.462 7.80 0.00 0.00 2.57
461 462 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
462 463 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
463 464 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
464 465 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
465 466 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
466 467 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
509 510 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
510 511 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
511 512 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
512 513 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
540 541 9.211485 TCTAGAAAAACAAGTATTTAGGAACGG 57.789 33.333 0.00 0.00 0.00 4.44
541 542 9.211485 CTAGAAAAACAAGTATTTAGGAACGGA 57.789 33.333 0.00 0.00 0.00 4.69
542 543 8.095937 AGAAAAACAAGTATTTAGGAACGGAG 57.904 34.615 0.00 0.00 0.00 4.63
543 544 6.812879 AAAACAAGTATTTAGGAACGGAGG 57.187 37.500 0.00 0.00 0.00 4.30
544 545 4.482952 ACAAGTATTTAGGAACGGAGGG 57.517 45.455 0.00 0.00 0.00 4.30
545 546 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
546 547 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
547 548 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
548 549 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
549 550 4.892345 AGTATTTAGGAACGGAGGGAGTAC 59.108 45.833 0.00 0.00 0.00 2.73
550 551 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
551 552 4.591321 TTTAGGAACGGAGGGAGTACTA 57.409 45.455 0.00 0.00 0.00 1.82
552 553 2.433662 AGGAACGGAGGGAGTACTAC 57.566 55.000 0.00 0.00 0.00 2.73
553 554 1.921748 AGGAACGGAGGGAGTACTACT 59.078 52.381 4.77 1.85 0.00 2.57
554 555 2.092484 AGGAACGGAGGGAGTACTACTC 60.092 54.545 15.38 15.38 44.32 2.59
555 556 2.092484 GGAACGGAGGGAGTACTACTCT 60.092 54.545 20.36 10.41 44.46 3.24
556 557 3.135530 GGAACGGAGGGAGTACTACTCTA 59.864 52.174 20.36 0.00 44.46 2.43
557 558 3.836365 ACGGAGGGAGTACTACTCTAC 57.164 52.381 20.36 10.22 44.46 2.59
558 559 2.102252 ACGGAGGGAGTACTACTCTACG 59.898 54.545 20.51 20.51 44.46 3.51
584 585 0.471780 TCTGTTGGGGAGCAGAGACA 60.472 55.000 0.00 0.00 36.89 3.41
585 586 0.397941 CTGTTGGGGAGCAGAGACAA 59.602 55.000 0.00 0.00 34.87 3.18
586 587 0.397941 TGTTGGGGAGCAGAGACAAG 59.602 55.000 0.00 0.00 0.00 3.16
587 588 0.957888 GTTGGGGAGCAGAGACAAGC 60.958 60.000 0.00 0.00 0.00 4.01
601 602 1.095228 ACAAGCTGGTGTGTTGGTCG 61.095 55.000 0.00 0.00 0.00 4.79
605 606 1.298859 GCTGGTGTGTTGGTCGGATC 61.299 60.000 0.00 0.00 0.00 3.36
611 612 2.993899 GTGTGTTGGTCGGATCAACTAG 59.006 50.000 28.59 0.00 43.36 2.57
612 613 2.894765 TGTGTTGGTCGGATCAACTAGA 59.105 45.455 28.59 14.66 43.36 2.43
614 615 4.202274 TGTGTTGGTCGGATCAACTAGAAA 60.202 41.667 28.59 10.59 43.36 2.52
615 616 4.935808 GTGTTGGTCGGATCAACTAGAAAT 59.064 41.667 28.59 0.00 43.36 2.17
617 618 4.819105 TGGTCGGATCAACTAGAAATGT 57.181 40.909 0.00 0.00 0.00 2.71
618 619 4.503910 TGGTCGGATCAACTAGAAATGTG 58.496 43.478 0.00 0.00 0.00 3.21
619 620 4.221924 TGGTCGGATCAACTAGAAATGTGA 59.778 41.667 0.00 0.00 0.00 3.58
641 653 9.524106 TGTGATTGATGATCAATTTATTGAAGC 57.476 29.630 20.49 6.46 46.20 3.86
642 654 9.524106 GTGATTGATGATCAATTTATTGAAGCA 57.476 29.630 20.49 8.77 46.20 3.91
656 694 4.707030 TTGAAGCATGTGGATGATGAAC 57.293 40.909 0.00 0.00 0.00 3.18
665 703 6.852853 GCATGTGGATGATGAACGTTAATTAG 59.147 38.462 0.00 0.00 0.00 1.73
670 708 8.753175 GTGGATGATGAACGTTAATTAGTCTAC 58.247 37.037 0.00 3.99 0.00 2.59
671 709 8.692710 TGGATGATGAACGTTAATTAGTCTACT 58.307 33.333 0.00 0.00 0.00 2.57
675 713 9.999009 TGATGAACGTTAATTAGTCTACTACAG 57.001 33.333 0.00 0.00 0.00 2.74
852 2235 9.829507 ATCCATATATAGAAGAAGCAAGCATAC 57.170 33.333 0.00 0.00 0.00 2.39
853 2236 8.815912 TCCATATATAGAAGAAGCAAGCATACA 58.184 33.333 0.00 0.00 0.00 2.29
857 2240 2.751806 AGAAGAAGCAAGCATACAAGGC 59.248 45.455 0.00 0.00 0.00 4.35
858 2241 2.205022 AGAAGCAAGCATACAAGGCA 57.795 45.000 0.00 0.00 0.00 4.75
859 2242 2.517959 AGAAGCAAGCATACAAGGCAA 58.482 42.857 0.00 0.00 0.00 4.52
861 2244 2.205022 AGCAAGCATACAAGGCAAGA 57.795 45.000 0.00 0.00 0.00 3.02
882 2274 3.229276 TGGCCACAAAATGATTTAGCG 57.771 42.857 0.00 0.00 0.00 4.26
900 2292 2.941453 CGGTGCCACGCTATCTATAT 57.059 50.000 0.00 0.00 0.00 0.86
901 2293 2.530177 CGGTGCCACGCTATCTATATG 58.470 52.381 0.00 0.00 0.00 1.78
902 2294 2.094700 CGGTGCCACGCTATCTATATGT 60.095 50.000 0.00 0.00 0.00 2.29
903 2295 3.614150 CGGTGCCACGCTATCTATATGTT 60.614 47.826 0.00 0.00 0.00 2.71
904 2296 4.315803 GGTGCCACGCTATCTATATGTTT 58.684 43.478 0.00 0.00 0.00 2.83
905 2297 4.389077 GGTGCCACGCTATCTATATGTTTC 59.611 45.833 0.00 0.00 0.00 2.78
906 2298 5.230942 GTGCCACGCTATCTATATGTTTCT 58.769 41.667 0.00 0.00 0.00 2.52
907 2299 5.346281 GTGCCACGCTATCTATATGTTTCTC 59.654 44.000 0.00 0.00 0.00 2.87
908 2300 4.865365 GCCACGCTATCTATATGTTTCTCC 59.135 45.833 0.00 0.00 0.00 3.71
909 2301 5.336849 GCCACGCTATCTATATGTTTCTCCT 60.337 44.000 0.00 0.00 0.00 3.69
915 2307 8.740906 CGCTATCTATATGTTTCTCCTTCCTTA 58.259 37.037 0.00 0.00 0.00 2.69
970 2365 1.480137 CCACTTGCCCTCAACAAACAA 59.520 47.619 0.00 0.00 0.00 2.83
971 2366 2.093764 CCACTTGCCCTCAACAAACAAA 60.094 45.455 0.00 0.00 0.00 2.83
972 2367 2.929398 CACTTGCCCTCAACAAACAAAC 59.071 45.455 0.00 0.00 0.00 2.93
974 2369 2.663826 TGCCCTCAACAAACAAACAC 57.336 45.000 0.00 0.00 0.00 3.32
978 2373 2.433970 CCCTCAACAAACAAACACCCAT 59.566 45.455 0.00 0.00 0.00 4.00
979 2374 3.492482 CCCTCAACAAACAAACACCCATC 60.492 47.826 0.00 0.00 0.00 3.51
980 2375 3.492482 CCTCAACAAACAAACACCCATCC 60.492 47.826 0.00 0.00 0.00 3.51
981 2376 3.099905 TCAACAAACAAACACCCATCCA 58.900 40.909 0.00 0.00 0.00 3.41
984 2379 4.769345 ACAAACAAACACCCATCCAATT 57.231 36.364 0.00 0.00 0.00 2.32
985 2380 5.109500 ACAAACAAACACCCATCCAATTT 57.891 34.783 0.00 0.00 0.00 1.82
986 2381 5.122519 ACAAACAAACACCCATCCAATTTC 58.877 37.500 0.00 0.00 0.00 2.17
987 2382 5.121811 CAAACAAACACCCATCCAATTTCA 58.878 37.500 0.00 0.00 0.00 2.69
988 2383 5.565455 AACAAACACCCATCCAATTTCAT 57.435 34.783 0.00 0.00 0.00 2.57
989 2384 5.151297 ACAAACACCCATCCAATTTCATC 57.849 39.130 0.00 0.00 0.00 2.92
990 2385 4.592351 ACAAACACCCATCCAATTTCATCA 59.408 37.500 0.00 0.00 0.00 3.07
991 2386 5.248934 ACAAACACCCATCCAATTTCATCAT 59.751 36.000 0.00 0.00 0.00 2.45
992 2387 5.603170 AACACCCATCCAATTTCATCATC 57.397 39.130 0.00 0.00 0.00 2.92
993 2388 3.962718 ACACCCATCCAATTTCATCATCC 59.037 43.478 0.00 0.00 0.00 3.51
994 2389 3.962063 CACCCATCCAATTTCATCATCCA 59.038 43.478 0.00 0.00 0.00 3.41
995 2390 4.038763 CACCCATCCAATTTCATCATCCAG 59.961 45.833 0.00 0.00 0.00 3.86
996 2391 4.079038 ACCCATCCAATTTCATCATCCAGA 60.079 41.667 0.00 0.00 0.00 3.86
997 2392 5.084519 CCCATCCAATTTCATCATCCAGAT 58.915 41.667 0.00 0.00 37.48 2.90
1017 2412 0.887247 CAATGGCGTCCCAAATGTCA 59.113 50.000 0.00 0.00 46.14 3.58
1050 2445 0.247735 CTGTCGTCGTCATCGTCTCC 60.248 60.000 0.00 0.00 38.33 3.71
1053 2448 1.088340 TCGTCGTCATCGTCTCCTCC 61.088 60.000 0.00 0.00 38.33 4.30
1054 2449 1.728672 GTCGTCATCGTCTCCTCCC 59.271 63.158 0.00 0.00 38.33 4.30
1055 2450 0.748729 GTCGTCATCGTCTCCTCCCT 60.749 60.000 0.00 0.00 38.33 4.20
1074 2469 4.583254 CTCGCCGTCGCTCTCTCG 62.583 72.222 0.00 0.00 35.26 4.04
1142 2603 2.307496 ATTGGTGGAGTGGAATTGCA 57.693 45.000 0.00 0.00 0.00 4.08
1143 2604 2.307496 TTGGTGGAGTGGAATTGCAT 57.693 45.000 1.94 0.00 0.00 3.96
1144 2605 1.548081 TGGTGGAGTGGAATTGCATG 58.452 50.000 1.94 0.00 0.00 4.06
1174 2645 9.081204 TGATGAAGAAAAGAAGGATTGAAATGA 57.919 29.630 0.00 0.00 0.00 2.57
1179 2650 8.543862 AGAAAAGAAGGATTGAAATGAAATGC 57.456 30.769 0.00 0.00 0.00 3.56
1180 2651 8.152246 AGAAAAGAAGGATTGAAATGAAATGCA 58.848 29.630 0.00 0.00 0.00 3.96
1181 2652 7.900782 AAAGAAGGATTGAAATGAAATGCAG 57.099 32.000 0.00 0.00 0.00 4.41
1182 2653 6.845758 AGAAGGATTGAAATGAAATGCAGA 57.154 33.333 0.00 0.00 0.00 4.26
1183 2654 7.419711 AGAAGGATTGAAATGAAATGCAGAT 57.580 32.000 0.00 0.00 0.00 2.90
1201 2672 2.043953 GATGAAGGTGGTGGGCCC 60.044 66.667 17.59 17.59 0.00 5.80
1351 2822 2.347490 CCCAACCTCGACACCCTG 59.653 66.667 0.00 0.00 0.00 4.45
1495 2966 2.287915 CACCGTCAAGGAGTTCAAGTTG 59.712 50.000 0.00 0.00 45.00 3.16
1790 3261 2.583441 CCCTGCACGGAGAAGGTGA 61.583 63.158 0.00 0.00 37.60 4.02
1958 3429 3.835395 CTCCATCCAATCCCTAGTACTCC 59.165 52.174 0.00 0.00 0.00 3.85
1959 3430 2.907042 CCATCCAATCCCTAGTACTCCC 59.093 54.545 0.00 0.00 0.00 4.30
1960 3431 3.440154 CCATCCAATCCCTAGTACTCCCT 60.440 52.174 0.00 0.00 0.00 4.20
1961 3432 3.614568 TCCAATCCCTAGTACTCCCTC 57.385 52.381 0.00 0.00 0.00 4.30
1962 3433 2.179424 TCCAATCCCTAGTACTCCCTCC 59.821 54.545 0.00 0.00 0.00 4.30
1963 3434 2.610873 CAATCCCTAGTACTCCCTCCC 58.389 57.143 0.00 0.00 0.00 4.30
1964 3435 2.180308 CAATCCCTAGTACTCCCTCCCT 59.820 54.545 0.00 0.00 0.00 4.20
1965 3436 2.925115 TCCCTAGTACTCCCTCCCTA 57.075 55.000 0.00 0.00 0.00 3.53
1966 3437 3.171202 TCCCTAGTACTCCCTCCCTAA 57.829 52.381 0.00 0.00 0.00 2.69
1967 3438 3.488226 TCCCTAGTACTCCCTCCCTAAA 58.512 50.000 0.00 0.00 0.00 1.85
1968 3439 3.206185 TCCCTAGTACTCCCTCCCTAAAC 59.794 52.174 0.00 0.00 0.00 2.01
1969 3440 3.207093 CCCTAGTACTCCCTCCCTAAACT 59.793 52.174 0.00 0.00 0.00 2.66
1970 3441 4.418190 CCCTAGTACTCCCTCCCTAAACTA 59.582 50.000 0.00 0.00 0.00 2.24
1971 3442 5.103344 CCCTAGTACTCCCTCCCTAAACTAA 60.103 48.000 0.00 0.00 0.00 2.24
1972 3443 6.412969 CCCTAGTACTCCCTCCCTAAACTAAT 60.413 46.154 0.00 0.00 0.00 1.73
1973 3444 7.202355 CCCTAGTACTCCCTCCCTAAACTAATA 60.202 44.444 0.00 0.00 0.00 0.98
1974 3445 8.400317 CCTAGTACTCCCTCCCTAAACTAATAT 58.600 40.741 0.00 0.00 0.00 1.28
1980 3451 8.438373 ACTCCCTCCCTAAACTAATATAAAAGC 58.562 37.037 0.00 0.00 0.00 3.51
1981 3452 8.577164 TCCCTCCCTAAACTAATATAAAAGCT 57.423 34.615 0.00 0.00 0.00 3.74
1982 3453 9.010767 TCCCTCCCTAAACTAATATAAAAGCTT 57.989 33.333 0.00 0.00 0.00 3.74
2000 3471 6.575162 AAGCTTACATTTGTTTACAGAGGG 57.425 37.500 0.00 0.00 0.00 4.30
2001 3472 5.876357 AGCTTACATTTGTTTACAGAGGGA 58.124 37.500 0.00 0.00 0.00 4.20
2002 3473 5.940470 AGCTTACATTTGTTTACAGAGGGAG 59.060 40.000 0.00 0.00 0.00 4.30
2003 3474 5.705905 GCTTACATTTGTTTACAGAGGGAGT 59.294 40.000 0.00 0.00 0.00 3.85
2004 3475 6.877322 GCTTACATTTGTTTACAGAGGGAGTA 59.123 38.462 0.00 0.00 0.00 2.59
2005 3476 7.148457 GCTTACATTTGTTTACAGAGGGAGTAC 60.148 40.741 0.00 0.00 0.00 2.73
2025 3496 7.378995 GGAGTACAATAAGCAAGACATAGTACG 59.621 40.741 0.00 0.00 35.67 3.67
2038 3509 2.898729 TAGTACGTACTCCCTCCTCG 57.101 55.000 30.53 0.00 37.73 4.63
2041 3512 0.620556 TACGTACTCCCTCCTCGGTT 59.379 55.000 0.00 0.00 0.00 4.44
2045 3516 0.324091 TACTCCCTCCTCGGTTCCAC 60.324 60.000 0.00 0.00 0.00 4.02
2052 3523 3.389983 CCCTCCTCGGTTCCACAATATAA 59.610 47.826 0.00 0.00 0.00 0.98
2097 3568 8.443160 ACATGTCAAAATGAGTAAACATCTACG 58.557 33.333 0.00 0.00 0.00 3.51
2225 3792 3.848272 AATGTACTTTTGGGATGTGCG 57.152 42.857 0.00 0.00 0.00 5.34
2268 4770 8.608102 CAGTCAATGCTATACGTATGTATCTC 57.392 38.462 18.37 5.44 41.50 2.75
2269 4771 8.454894 CAGTCAATGCTATACGTATGTATCTCT 58.545 37.037 18.37 8.96 41.50 3.10
2270 4772 9.668497 AGTCAATGCTATACGTATGTATCTCTA 57.332 33.333 18.37 0.00 41.50 2.43
2271 4773 9.705471 GTCAATGCTATACGTATGTATCTCTAC 57.295 37.037 18.37 4.33 41.50 2.59
2272 4774 9.668497 TCAATGCTATACGTATGTATCTCTACT 57.332 33.333 18.37 0.00 41.50 2.57
2273 4775 9.923786 CAATGCTATACGTATGTATCTCTACTC 57.076 37.037 18.37 0.00 41.50 2.59
2274 4776 9.893634 AATGCTATACGTATGTATCTCTACTCT 57.106 33.333 18.37 0.00 41.50 3.24
2275 4777 8.929827 TGCTATACGTATGTATCTCTACTCTC 57.070 38.462 18.37 0.00 41.50 3.20
2276 4778 8.529476 TGCTATACGTATGTATCTCTACTCTCA 58.471 37.037 18.37 0.00 41.50 3.27
2277 4779 9.368674 GCTATACGTATGTATCTCTACTCTCAA 57.631 37.037 18.37 0.00 41.50 3.02
2361 4900 2.125912 ATGCGCTCGACCACAGAC 60.126 61.111 9.73 0.00 0.00 3.51
2362 4901 2.931068 ATGCGCTCGACCACAGACA 61.931 57.895 9.73 0.00 0.00 3.41
2363 4902 2.807045 GCGCTCGACCACAGACAG 60.807 66.667 0.00 0.00 0.00 3.51
2364 4903 2.954611 CGCTCGACCACAGACAGA 59.045 61.111 0.00 0.00 0.00 3.41
2367 4906 0.814457 GCTCGACCACAGACAGAGAT 59.186 55.000 0.00 0.00 0.00 2.75
2423 4966 0.674895 GGCTTGCTCATTGAGGACGT 60.675 55.000 15.28 0.00 27.75 4.34
2424 4967 1.405526 GGCTTGCTCATTGAGGACGTA 60.406 52.381 15.28 0.00 27.75 3.57
2425 4968 1.661112 GCTTGCTCATTGAGGACGTAC 59.339 52.381 15.28 0.00 27.75 3.67
2426 4969 1.920574 CTTGCTCATTGAGGACGTACG 59.079 52.381 15.01 15.01 27.75 3.67
2427 4970 0.885879 TGCTCATTGAGGACGTACGT 59.114 50.000 23.04 23.04 0.00 3.57
2428 4971 2.086094 TGCTCATTGAGGACGTACGTA 58.914 47.619 22.87 5.45 0.00 3.57
2429 4972 2.159476 TGCTCATTGAGGACGTACGTAC 60.159 50.000 23.27 23.27 0.00 3.67
2438 4981 4.062183 CGTACGTACGGCTTCCAC 57.938 61.111 34.54 4.73 45.30 4.02
2439 4982 1.514873 CGTACGTACGGCTTCCACC 60.515 63.158 34.54 1.44 45.30 4.61
2440 4983 1.153765 GTACGTACGGCTTCCACCC 60.154 63.158 21.06 0.00 0.00 4.61
2441 4984 1.606025 TACGTACGGCTTCCACCCA 60.606 57.895 21.06 0.00 0.00 4.51
2442 4985 1.184322 TACGTACGGCTTCCACCCAA 61.184 55.000 21.06 0.00 0.00 4.12
2443 4986 1.301874 CGTACGGCTTCCACCCAAA 60.302 57.895 7.57 0.00 0.00 3.28
2444 4987 1.571215 CGTACGGCTTCCACCCAAAC 61.571 60.000 7.57 0.00 0.00 2.93
2445 4988 1.301874 TACGGCTTCCACCCAAACG 60.302 57.895 0.00 0.00 0.00 3.60
2446 4989 1.756408 TACGGCTTCCACCCAAACGA 61.756 55.000 0.00 0.00 0.00 3.85
2447 4990 1.674322 CGGCTTCCACCCAAACGAT 60.674 57.895 0.00 0.00 0.00 3.73
2448 4991 1.241315 CGGCTTCCACCCAAACGATT 61.241 55.000 0.00 0.00 0.00 3.34
2449 4992 0.243636 GGCTTCCACCCAAACGATTG 59.756 55.000 0.00 0.00 36.25 2.67
2450 4993 0.388520 GCTTCCACCCAAACGATTGC 60.389 55.000 0.00 0.00 35.10 3.56
2451 4994 1.247567 CTTCCACCCAAACGATTGCT 58.752 50.000 0.00 0.00 35.10 3.91
2452 4995 0.958091 TTCCACCCAAACGATTGCTG 59.042 50.000 0.00 0.00 35.10 4.41
2453 4996 0.893270 TCCACCCAAACGATTGCTGG 60.893 55.000 11.82 11.82 35.58 4.85
2454 4997 0.893270 CCACCCAAACGATTGCTGGA 60.893 55.000 12.41 0.00 35.99 3.86
2455 4998 1.176527 CACCCAAACGATTGCTGGAT 58.823 50.000 7.53 0.00 35.10 3.41
2456 4999 1.545582 CACCCAAACGATTGCTGGATT 59.454 47.619 7.53 0.00 35.10 3.01
2457 5000 1.545582 ACCCAAACGATTGCTGGATTG 59.454 47.619 7.53 0.00 35.10 2.67
2458 5001 1.632422 CCAAACGATTGCTGGATTGC 58.368 50.000 0.00 0.00 35.10 3.56
2459 5002 1.203052 CCAAACGATTGCTGGATTGCT 59.797 47.619 0.00 0.00 35.10 3.91
2460 5003 2.256174 CAAACGATTGCTGGATTGCTG 58.744 47.619 0.00 0.00 0.00 4.41
2461 5004 0.171903 AACGATTGCTGGATTGCTGC 59.828 50.000 0.00 0.00 0.00 5.25
2462 5005 1.298116 CGATTGCTGGATTGCTGCG 60.298 57.895 2.82 0.00 0.00 5.18
2463 5006 1.065273 GATTGCTGGATTGCTGCGG 59.935 57.895 2.82 0.00 0.00 5.69
2464 5007 2.948840 GATTGCTGGATTGCTGCGGC 62.949 60.000 11.65 11.65 44.79 6.53
2479 5022 3.762247 GGCGGCCACAACATGCAT 61.762 61.111 15.62 0.00 0.00 3.96
2480 5023 2.507547 GCGGCCACAACATGCATG 60.508 61.111 25.09 25.09 0.00 4.06
2481 5024 2.182284 CGGCCACAACATGCATGG 59.818 61.111 29.41 15.07 36.51 3.66
2486 5029 2.282701 CCACAACATGCATGGCTAAC 57.717 50.000 29.41 0.00 0.00 2.34
2487 5030 1.545136 CCACAACATGCATGGCTAACA 59.455 47.619 29.41 0.00 0.00 2.41
2488 5031 2.029200 CCACAACATGCATGGCTAACAA 60.029 45.455 29.41 0.00 0.00 2.83
2489 5032 2.988493 CACAACATGCATGGCTAACAAC 59.012 45.455 29.41 0.00 0.00 3.32
2490 5033 2.627221 ACAACATGCATGGCTAACAACA 59.373 40.909 29.41 0.00 0.00 3.33
2491 5034 3.069300 ACAACATGCATGGCTAACAACAA 59.931 39.130 29.41 0.00 0.00 2.83
2492 5035 3.581024 ACATGCATGGCTAACAACAAG 57.419 42.857 29.41 0.88 0.00 3.16
2493 5036 2.231964 ACATGCATGGCTAACAACAAGG 59.768 45.455 29.41 0.42 0.00 3.61
2494 5037 1.255882 TGCATGGCTAACAACAAGGG 58.744 50.000 0.00 0.00 0.00 3.95
2495 5038 0.108662 GCATGGCTAACAACAAGGGC 60.109 55.000 0.00 0.00 0.00 5.19
2496 5039 0.532115 CATGGCTAACAACAAGGGCC 59.468 55.000 0.00 0.00 42.73 5.80
2497 5040 4.511838 GGCTAACAACAAGGGCCA 57.488 55.556 6.18 0.00 42.08 5.36
2498 5041 0.825840 TGGCTAACAACAAGGGCCAC 60.826 55.000 6.18 0.00 46.35 5.01
2499 5042 0.539669 GGCTAACAACAAGGGCCACT 60.540 55.000 6.18 0.00 42.08 4.00
2500 5043 1.271707 GGCTAACAACAAGGGCCACTA 60.272 52.381 6.18 0.00 42.08 2.74
2501 5044 2.084546 GCTAACAACAAGGGCCACTAG 58.915 52.381 6.18 0.00 0.00 2.57
2502 5045 2.711542 CTAACAACAAGGGCCACTAGG 58.288 52.381 6.18 0.00 38.23 3.02
2512 5055 4.461119 CCACTAGGCACTCCCAGA 57.539 61.111 0.00 0.00 41.75 3.86
2513 5056 1.901085 CCACTAGGCACTCCCAGAC 59.099 63.158 0.00 0.00 41.75 3.51
2514 5057 0.904865 CCACTAGGCACTCCCAGACA 60.905 60.000 0.00 0.00 41.75 3.41
2515 5058 1.198713 CACTAGGCACTCCCAGACAT 58.801 55.000 0.00 0.00 41.75 3.06
2516 5059 2.388735 CACTAGGCACTCCCAGACATA 58.611 52.381 0.00 0.00 41.75 2.29
2517 5060 2.101582 CACTAGGCACTCCCAGACATAC 59.898 54.545 0.00 0.00 41.75 2.39
2518 5061 1.338337 CTAGGCACTCCCAGACATACG 59.662 57.143 0.00 0.00 41.75 3.06
2519 5062 0.324368 AGGCACTCCCAGACATACGA 60.324 55.000 0.00 0.00 35.39 3.43
2520 5063 0.753262 GGCACTCCCAGACATACGAT 59.247 55.000 0.00 0.00 0.00 3.73
2521 5064 1.539065 GGCACTCCCAGACATACGATG 60.539 57.143 0.00 0.00 0.00 3.84
2533 5076 2.352651 ACATACGATGTCAACAGCATGC 59.647 45.455 10.51 10.51 39.92 4.06
2534 5077 2.091852 TACGATGTCAACAGCATGCA 57.908 45.000 21.98 0.00 42.53 3.96
2535 5078 1.456296 ACGATGTCAACAGCATGCAT 58.544 45.000 21.98 4.26 42.53 3.96
2536 5079 2.631267 ACGATGTCAACAGCATGCATA 58.369 42.857 21.98 0.00 42.53 3.14
2537 5080 2.352651 ACGATGTCAACAGCATGCATAC 59.647 45.455 21.98 10.35 42.53 2.39
2538 5081 2.610833 CGATGTCAACAGCATGCATACT 59.389 45.455 21.98 0.00 42.53 2.12
2539 5082 3.302935 CGATGTCAACAGCATGCATACTC 60.303 47.826 21.98 6.18 42.53 2.59
2540 5083 2.001872 TGTCAACAGCATGCATACTCG 58.998 47.619 21.98 2.93 42.53 4.18
2541 5084 1.009078 TCAACAGCATGCATACTCGC 58.991 50.000 21.98 0.00 42.53 5.03
2542 5085 0.315625 CAACAGCATGCATACTCGCG 60.316 55.000 21.98 0.00 42.53 5.87
2543 5086 1.431488 AACAGCATGCATACTCGCGG 61.431 55.000 21.98 1.72 42.53 6.46
2544 5087 1.592400 CAGCATGCATACTCGCGGA 60.592 57.895 21.98 0.00 33.35 5.54
2545 5088 1.592669 AGCATGCATACTCGCGGAC 60.593 57.895 21.98 0.00 33.35 4.79
2546 5089 2.932083 GCATGCATACTCGCGGACG 61.932 63.158 14.21 0.00 42.01 4.79
2547 5090 2.027605 ATGCATACTCGCGGACGG 59.972 61.111 6.13 0.00 40.63 4.79
2548 5091 4.865761 TGCATACTCGCGGACGGC 62.866 66.667 6.13 4.94 40.63 5.68
2571 5114 3.730761 GCGTGCTCAAGGCCAGTG 61.731 66.667 5.01 2.04 40.92 3.66
2572 5115 3.730761 CGTGCTCAAGGCCAGTGC 61.731 66.667 5.01 10.49 40.92 4.40
2573 5116 2.282040 GTGCTCAAGGCCAGTGCT 60.282 61.111 18.84 0.00 40.92 4.40
2574 5117 1.900498 GTGCTCAAGGCCAGTGCTT 60.900 57.895 18.84 0.00 40.92 3.91
2575 5118 1.900016 TGCTCAAGGCCAGTGCTTG 60.900 57.895 18.84 9.09 40.92 4.01
2576 5119 2.960170 CTCAAGGCCAGTGCTTGC 59.040 61.111 5.01 0.00 37.74 4.01
2577 5120 2.974489 CTCAAGGCCAGTGCTTGCG 61.974 63.158 5.01 0.00 37.74 4.85
2578 5121 4.047059 CAAGGCCAGTGCTTGCGG 62.047 66.667 5.01 0.00 37.74 5.69
2579 5122 4.269523 AAGGCCAGTGCTTGCGGA 62.270 61.111 5.01 0.00 37.74 5.54
2580 5123 3.790416 AAGGCCAGTGCTTGCGGAA 62.790 57.895 5.01 0.00 37.74 4.30
2581 5124 3.741476 GGCCAGTGCTTGCGGAAG 61.741 66.667 12.94 12.94 37.74 3.46
2582 5125 3.741476 GCCAGTGCTTGCGGAAGG 61.741 66.667 18.86 3.03 33.53 3.46
2583 5126 3.741476 CCAGTGCTTGCGGAAGGC 61.741 66.667 18.86 11.00 43.96 4.35
2592 5135 3.499737 GCGGAAGGCGGTGTCATG 61.500 66.667 0.00 0.00 0.00 3.07
2593 5136 3.499737 CGGAAGGCGGTGTCATGC 61.500 66.667 0.00 0.00 0.00 4.06
2594 5137 2.359850 GGAAGGCGGTGTCATGCA 60.360 61.111 0.00 0.00 0.00 3.96
2595 5138 1.750399 GGAAGGCGGTGTCATGCAT 60.750 57.895 0.00 0.00 0.00 3.96
2596 5139 0.463654 GGAAGGCGGTGTCATGCATA 60.464 55.000 0.00 0.00 0.00 3.14
2597 5140 0.657840 GAAGGCGGTGTCATGCATAC 59.342 55.000 0.00 0.00 0.00 2.39
2598 5141 0.253044 AAGGCGGTGTCATGCATACT 59.747 50.000 0.00 0.00 0.00 2.12
2599 5142 0.179073 AGGCGGTGTCATGCATACTC 60.179 55.000 0.00 0.00 0.00 2.59
2600 5143 1.490693 GGCGGTGTCATGCATACTCG 61.491 60.000 0.00 8.15 0.00 4.18
2601 5144 1.927210 CGGTGTCATGCATACTCGC 59.073 57.895 0.00 0.00 0.00 5.03
2602 5145 1.811217 CGGTGTCATGCATACTCGCG 61.811 60.000 0.00 0.00 33.35 5.87
2603 5146 1.490693 GGTGTCATGCATACTCGCGG 61.491 60.000 6.13 0.00 33.35 6.46
2604 5147 0.527600 GTGTCATGCATACTCGCGGA 60.528 55.000 6.13 0.00 33.35 5.54
2605 5148 0.527600 TGTCATGCATACTCGCGGAC 60.528 55.000 6.13 1.14 38.54 4.79
2606 5149 1.299089 TCATGCATACTCGCGGACG 60.299 57.895 6.13 0.00 42.01 4.79
2607 5150 2.027605 ATGCATACTCGCGGACGG 59.972 61.111 6.13 0.00 40.63 4.79
2608 5151 4.865761 TGCATACTCGCGGACGGC 62.866 66.667 6.13 4.94 40.63 5.68
2631 5174 3.730761 GCGTGCTCAAGGCCAGTG 61.731 66.667 5.01 2.04 40.92 3.66
2632 5175 3.730761 CGTGCTCAAGGCCAGTGC 61.731 66.667 5.01 10.49 40.92 4.40
2652 5195 3.499737 GCGGAAGGCGGTGTCATG 61.500 66.667 0.00 0.00 0.00 3.07
2653 5196 3.499737 CGGAAGGCGGTGTCATGC 61.500 66.667 0.00 0.00 0.00 4.06
2654 5197 2.359850 GGAAGGCGGTGTCATGCA 60.360 61.111 0.00 0.00 0.00 3.96
2655 5198 1.750399 GGAAGGCGGTGTCATGCAT 60.750 57.895 0.00 0.00 0.00 3.96
2656 5199 0.463654 GGAAGGCGGTGTCATGCATA 60.464 55.000 0.00 0.00 0.00 3.14
2657 5200 0.657840 GAAGGCGGTGTCATGCATAC 59.342 55.000 0.00 0.00 0.00 2.39
2658 5201 0.253044 AAGGCGGTGTCATGCATACT 59.747 50.000 0.00 0.00 0.00 2.12
2659 5202 0.179073 AGGCGGTGTCATGCATACTC 60.179 55.000 0.00 0.00 0.00 2.59
2660 5203 1.490693 GGCGGTGTCATGCATACTCG 61.491 60.000 0.00 8.15 0.00 4.18
2661 5204 1.927210 CGGTGTCATGCATACTCGC 59.073 57.895 0.00 0.00 0.00 5.03
2662 5205 1.811217 CGGTGTCATGCATACTCGCG 61.811 60.000 0.00 0.00 33.35 5.87
2663 5206 1.490693 GGTGTCATGCATACTCGCGG 61.491 60.000 6.13 0.00 33.35 6.46
2664 5207 0.527600 GTGTCATGCATACTCGCGGA 60.528 55.000 6.13 0.00 33.35 5.54
2665 5208 0.527600 TGTCATGCATACTCGCGGAC 60.528 55.000 6.13 1.14 38.54 4.79
2666 5209 1.299089 TCATGCATACTCGCGGACG 60.299 57.895 6.13 0.00 42.01 4.79
2667 5210 2.027605 ATGCATACTCGCGGACGG 59.972 61.111 6.13 0.00 40.63 4.79
2668 5211 4.865761 TGCATACTCGCGGACGGC 62.866 66.667 6.13 4.94 40.63 5.68
2691 5234 3.730761 GCGTGCTCAAGGCCAGTG 61.731 66.667 5.01 2.04 40.92 3.66
2692 5235 3.730761 CGTGCTCAAGGCCAGTGC 61.731 66.667 5.01 10.49 40.92 4.40
2712 5255 3.499737 GCGGAAGGCGGTGTCATG 61.500 66.667 0.00 0.00 0.00 3.07
2713 5256 3.499737 CGGAAGGCGGTGTCATGC 61.500 66.667 0.00 0.00 0.00 4.06
2714 5257 2.359850 GGAAGGCGGTGTCATGCA 60.360 61.111 0.00 0.00 0.00 3.96
2715 5258 1.750399 GGAAGGCGGTGTCATGCAT 60.750 57.895 0.00 0.00 0.00 3.96
2716 5259 0.463654 GGAAGGCGGTGTCATGCATA 60.464 55.000 0.00 0.00 0.00 3.14
2717 5260 0.657840 GAAGGCGGTGTCATGCATAC 59.342 55.000 0.00 0.00 0.00 2.39
2718 5261 0.253044 AAGGCGGTGTCATGCATACT 59.747 50.000 0.00 0.00 0.00 2.12
2719 5262 0.179073 AGGCGGTGTCATGCATACTC 60.179 55.000 0.00 0.00 0.00 2.59
2720 5263 1.490693 GGCGGTGTCATGCATACTCG 61.491 60.000 0.00 8.15 0.00 4.18
2721 5264 1.927210 CGGTGTCATGCATACTCGC 59.073 57.895 0.00 0.00 0.00 5.03
2722 5265 1.811217 CGGTGTCATGCATACTCGCG 61.811 60.000 0.00 0.00 33.35 5.87
2723 5266 1.490693 GGTGTCATGCATACTCGCGG 61.491 60.000 6.13 0.00 33.35 6.46
2724 5267 0.527600 GTGTCATGCATACTCGCGGA 60.528 55.000 6.13 0.00 33.35 5.54
2725 5268 0.527600 TGTCATGCATACTCGCGGAC 60.528 55.000 6.13 1.14 38.54 4.79
2726 5269 1.299089 TCATGCATACTCGCGGACG 60.299 57.895 6.13 0.00 42.01 4.79
2727 5270 2.027605 ATGCATACTCGCGGACGG 59.972 61.111 6.13 0.00 40.63 4.79
2728 5271 4.865761 TGCATACTCGCGGACGGC 62.866 66.667 6.13 4.94 40.63 5.68
2751 5294 3.730761 GCGTGCTCAAGGCCAGTG 61.731 66.667 5.01 2.04 40.92 3.66
2752 5295 3.730761 CGTGCTCAAGGCCAGTGC 61.731 66.667 5.01 10.49 40.92 4.40
2889 5432 3.499737 GCGGAAGGCGGTGTCATG 61.500 66.667 0.00 0.00 0.00 3.07
2890 5433 3.499737 CGGAAGGCGGTGTCATGC 61.500 66.667 0.00 0.00 0.00 4.06
2891 5434 2.359850 GGAAGGCGGTGTCATGCA 60.360 61.111 0.00 0.00 0.00 3.96
2892 5435 1.750399 GGAAGGCGGTGTCATGCAT 60.750 57.895 0.00 0.00 0.00 3.96
2893 5436 0.463654 GGAAGGCGGTGTCATGCATA 60.464 55.000 0.00 0.00 0.00 3.14
2894 5437 0.657840 GAAGGCGGTGTCATGCATAC 59.342 55.000 0.00 0.00 0.00 2.39
2895 5438 0.253044 AAGGCGGTGTCATGCATACT 59.747 50.000 0.00 0.00 0.00 2.12
2896 5439 0.179073 AGGCGGTGTCATGCATACTC 60.179 55.000 0.00 0.00 0.00 2.59
2897 5440 1.490693 GGCGGTGTCATGCATACTCG 61.491 60.000 0.00 8.15 0.00 4.18
2898 5441 1.927210 CGGTGTCATGCATACTCGC 59.073 57.895 0.00 0.00 0.00 5.03
2899 5442 1.811217 CGGTGTCATGCATACTCGCG 61.811 60.000 0.00 0.00 33.35 5.87
2900 5443 1.490693 GGTGTCATGCATACTCGCGG 61.491 60.000 6.13 0.00 33.35 6.46
2901 5444 0.527600 GTGTCATGCATACTCGCGGA 60.528 55.000 6.13 0.00 33.35 5.54
2902 5445 0.527600 TGTCATGCATACTCGCGGAC 60.528 55.000 6.13 1.14 38.54 4.79
2903 5446 1.299089 TCATGCATACTCGCGGACG 60.299 57.895 6.13 0.00 42.01 4.79
2904 5447 2.027605 ATGCATACTCGCGGACGG 59.972 61.111 6.13 0.00 40.63 4.79
2905 5448 4.865761 TGCATACTCGCGGACGGC 62.866 66.667 6.13 4.94 40.63 5.68
2928 5471 3.730761 GCGTGCTCAAGGCCAGTG 61.731 66.667 5.01 2.04 40.92 3.66
2929 5472 3.730761 CGTGCTCAAGGCCAGTGC 61.731 66.667 5.01 10.49 40.92 4.40
2950 5493 2.125912 CGGAAGGCGGTGTGAGAG 60.126 66.667 0.00 0.00 0.00 3.20
2959 5502 2.280797 GTGTGAGAGCGGCAACCA 60.281 61.111 1.45 0.00 0.00 3.67
2960 5503 2.031012 TGTGAGAGCGGCAACCAG 59.969 61.111 1.45 0.00 0.00 4.00
2961 5504 3.426568 GTGAGAGCGGCAACCAGC 61.427 66.667 1.45 0.00 44.65 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.742268 GAATCCTTGCTTCCACTCAGC 59.258 52.381 0.00 0.00 37.82 4.26
124 125 9.639563 TCATCTTCTTCTCTACTCTAATGACAT 57.360 33.333 0.00 0.00 0.00 3.06
160 161 4.044336 TCCACAAGAACAAAATGCACTG 57.956 40.909 0.00 0.00 0.00 3.66
161 162 4.942761 ATCCACAAGAACAAAATGCACT 57.057 36.364 0.00 0.00 0.00 4.40
162 163 4.211794 CCAATCCACAAGAACAAAATGCAC 59.788 41.667 0.00 0.00 0.00 4.57
173 174 4.097551 TGTCATCAACCAATCCACAAGA 57.902 40.909 0.00 0.00 0.00 3.02
179 180 3.355378 TGTCCATGTCATCAACCAATCC 58.645 45.455 0.00 0.00 0.00 3.01
197 198 3.376234 CACACCTGATTCATGTCCATGTC 59.624 47.826 7.13 0.00 39.72 3.06
198 199 3.349927 CACACCTGATTCATGTCCATGT 58.650 45.455 7.13 0.00 39.72 3.21
199 200 2.686405 CCACACCTGATTCATGTCCATG 59.314 50.000 0.71 0.71 40.09 3.66
200 201 2.357465 CCCACACCTGATTCATGTCCAT 60.357 50.000 0.00 0.00 0.00 3.41
201 202 1.004628 CCCACACCTGATTCATGTCCA 59.995 52.381 0.00 0.00 0.00 4.02
202 203 1.281867 TCCCACACCTGATTCATGTCC 59.718 52.381 0.00 0.00 0.00 4.02
379 380 2.784682 AGGAACGGAGGGAGTAGATACT 59.215 50.000 0.00 0.00 39.71 2.12
389 390 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
391 392 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
393 394 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
394 395 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
395 396 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
396 397 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
397 398 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
398 399 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
400 401 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
401 402 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
402 403 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
403 404 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
404 405 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
405 406 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
406 407 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
407 408 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
408 409 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
409 410 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
410 411 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
411 412 6.145535 GTCACTTGTTGAAATGCCTAGAAAG 58.854 40.000 0.00 0.00 35.39 2.62
412 413 5.277779 CGTCACTTGTTGAAATGCCTAGAAA 60.278 40.000 0.00 0.00 35.39 2.52
413 414 4.213270 CGTCACTTGTTGAAATGCCTAGAA 59.787 41.667 0.00 0.00 35.39 2.10
414 415 3.745975 CGTCACTTGTTGAAATGCCTAGA 59.254 43.478 0.00 0.00 35.39 2.43
415 416 3.745975 TCGTCACTTGTTGAAATGCCTAG 59.254 43.478 0.00 0.00 35.39 3.02
416 417 3.496884 GTCGTCACTTGTTGAAATGCCTA 59.503 43.478 0.00 0.00 35.39 3.93
417 418 2.290641 GTCGTCACTTGTTGAAATGCCT 59.709 45.455 0.00 0.00 35.39 4.75
418 419 2.032799 TGTCGTCACTTGTTGAAATGCC 59.967 45.455 0.00 0.00 35.39 4.40
419 420 3.332761 TGTCGTCACTTGTTGAAATGC 57.667 42.857 0.00 0.00 35.39 3.56
420 421 6.023435 CCATATGTCGTCACTTGTTGAAATG 58.977 40.000 1.24 0.00 35.39 2.32
421 422 5.937540 TCCATATGTCGTCACTTGTTGAAAT 59.062 36.000 1.24 0.00 35.39 2.17
422 423 5.301555 TCCATATGTCGTCACTTGTTGAAA 58.698 37.500 1.24 0.00 35.39 2.69
423 424 4.888917 TCCATATGTCGTCACTTGTTGAA 58.111 39.130 1.24 0.00 35.39 2.69
424 425 4.494484 CTCCATATGTCGTCACTTGTTGA 58.506 43.478 1.24 0.00 0.00 3.18
425 426 3.062639 GCTCCATATGTCGTCACTTGTTG 59.937 47.826 1.24 0.00 0.00 3.33
426 427 3.262420 GCTCCATATGTCGTCACTTGTT 58.738 45.455 1.24 0.00 0.00 2.83
427 428 2.233676 TGCTCCATATGTCGTCACTTGT 59.766 45.455 1.24 0.00 0.00 3.16
428 429 2.892374 TGCTCCATATGTCGTCACTTG 58.108 47.619 1.24 0.00 0.00 3.16
429 430 3.610040 TTGCTCCATATGTCGTCACTT 57.390 42.857 1.24 0.00 0.00 3.16
430 431 3.610040 TTTGCTCCATATGTCGTCACT 57.390 42.857 1.24 0.00 0.00 3.41
431 432 4.332543 TCATTTTGCTCCATATGTCGTCAC 59.667 41.667 1.24 0.00 0.00 3.67
432 433 4.512484 TCATTTTGCTCCATATGTCGTCA 58.488 39.130 1.24 0.00 0.00 4.35
433 434 4.572389 ACTCATTTTGCTCCATATGTCGTC 59.428 41.667 1.24 0.00 0.00 4.20
434 435 4.333649 CACTCATTTTGCTCCATATGTCGT 59.666 41.667 1.24 0.00 0.00 4.34
435 436 4.571984 TCACTCATTTTGCTCCATATGTCG 59.428 41.667 1.24 0.00 0.00 4.35
436 437 6.441093 TTCACTCATTTTGCTCCATATGTC 57.559 37.500 1.24 0.00 0.00 3.06
437 438 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
438 439 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
439 440 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
440 441 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
441 442 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
442 443 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
443 444 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
444 445 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
483 484 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
484 485 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
486 487 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
514 515 9.211485 CCGTTCCTAAATACTTGTTTTTCTAGA 57.789 33.333 0.00 0.00 0.00 2.43
515 516 9.211485 TCCGTTCCTAAATACTTGTTTTTCTAG 57.789 33.333 0.00 0.00 0.00 2.43
516 517 9.211485 CTCCGTTCCTAAATACTTGTTTTTCTA 57.789 33.333 0.00 0.00 0.00 2.10
517 518 7.174426 CCTCCGTTCCTAAATACTTGTTTTTCT 59.826 37.037 0.00 0.00 0.00 2.52
518 519 7.303261 CCTCCGTTCCTAAATACTTGTTTTTC 58.697 38.462 0.00 0.00 0.00 2.29
519 520 6.208007 CCCTCCGTTCCTAAATACTTGTTTTT 59.792 38.462 0.00 0.00 0.00 1.94
520 521 5.708697 CCCTCCGTTCCTAAATACTTGTTTT 59.291 40.000 0.00 0.00 0.00 2.43
521 522 5.013391 TCCCTCCGTTCCTAAATACTTGTTT 59.987 40.000 0.00 0.00 0.00 2.83
522 523 4.533311 TCCCTCCGTTCCTAAATACTTGTT 59.467 41.667 0.00 0.00 0.00 2.83
523 524 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
524 525 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
525 526 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
526 527 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
527 528 4.892345 AGTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
528 529 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
529 530 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
530 531 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
531 532 3.525199 AGTAGTACTCCCTCCGTTCCTAA 59.475 47.826 0.00 0.00 0.00 2.69
532 533 3.118531 AGTAGTACTCCCTCCGTTCCTA 58.881 50.000 0.00 0.00 0.00 2.94
533 534 1.921748 AGTAGTACTCCCTCCGTTCCT 59.078 52.381 0.00 0.00 0.00 3.36
534 535 2.092484 AGAGTAGTACTCCCTCCGTTCC 60.092 54.545 23.82 0.00 46.18 3.62
535 536 3.280197 AGAGTAGTACTCCCTCCGTTC 57.720 52.381 23.82 0.00 46.18 3.95
536 537 3.431486 CGTAGAGTAGTACTCCCTCCGTT 60.431 52.174 23.82 8.60 46.18 4.44
537 538 2.102252 CGTAGAGTAGTACTCCCTCCGT 59.898 54.545 23.82 9.26 46.18 4.69
538 539 2.102252 ACGTAGAGTAGTACTCCCTCCG 59.898 54.545 23.82 20.92 46.18 4.63
539 540 3.836365 ACGTAGAGTAGTACTCCCTCC 57.164 52.381 23.82 10.35 46.18 4.30
550 551 5.423015 CCCAACAGACTACTACGTAGAGTA 58.577 45.833 28.74 13.42 38.29 2.59
551 552 4.260170 CCCAACAGACTACTACGTAGAGT 58.740 47.826 28.74 23.87 38.29 3.24
552 553 3.626670 CCCCAACAGACTACTACGTAGAG 59.373 52.174 28.74 21.18 38.29 2.43
553 554 3.264193 TCCCCAACAGACTACTACGTAGA 59.736 47.826 28.74 11.46 38.29 2.59
554 555 3.614092 TCCCCAACAGACTACTACGTAG 58.386 50.000 20.97 20.97 41.43 3.51
555 556 3.614092 CTCCCCAACAGACTACTACGTA 58.386 50.000 0.00 0.00 0.00 3.57
556 557 2.444421 CTCCCCAACAGACTACTACGT 58.556 52.381 0.00 0.00 0.00 3.57
557 558 1.134560 GCTCCCCAACAGACTACTACG 59.865 57.143 0.00 0.00 0.00 3.51
558 559 2.166664 CTGCTCCCCAACAGACTACTAC 59.833 54.545 0.00 0.00 35.90 2.73
584 585 1.525995 CCGACCAACACACCAGCTT 60.526 57.895 0.00 0.00 0.00 3.74
585 586 1.768684 ATCCGACCAACACACCAGCT 61.769 55.000 0.00 0.00 0.00 4.24
586 587 1.298859 GATCCGACCAACACACCAGC 61.299 60.000 0.00 0.00 0.00 4.85
587 588 0.034756 TGATCCGACCAACACACCAG 59.965 55.000 0.00 0.00 0.00 4.00
601 602 8.442632 TCATCAATCACATTTCTAGTTGATCC 57.557 34.615 0.00 0.00 34.96 3.36
615 616 9.524106 GCTTCAATAAATTGATCATCAATCACA 57.476 29.630 13.44 2.57 45.57 3.58
639 651 2.408271 ACGTTCATCATCCACATGCT 57.592 45.000 0.00 0.00 0.00 3.79
640 652 4.614555 TTAACGTTCATCATCCACATGC 57.385 40.909 2.82 0.00 0.00 4.06
641 653 7.919690 ACTAATTAACGTTCATCATCCACATG 58.080 34.615 2.82 0.00 0.00 3.21
642 654 7.987458 AGACTAATTAACGTTCATCATCCACAT 59.013 33.333 2.82 0.00 0.00 3.21
643 655 7.327975 AGACTAATTAACGTTCATCATCCACA 58.672 34.615 2.82 0.00 0.00 4.17
644 656 7.772332 AGACTAATTAACGTTCATCATCCAC 57.228 36.000 2.82 0.00 0.00 4.02
645 657 8.692710 AGTAGACTAATTAACGTTCATCATCCA 58.307 33.333 2.82 0.00 0.00 3.41
670 708 6.974932 AATCAACACAAGCATCTACTGTAG 57.025 37.500 8.55 8.55 0.00 2.74
671 709 7.744087 AAAATCAACACAAGCATCTACTGTA 57.256 32.000 0.00 0.00 0.00 2.74
672 710 6.639632 AAAATCAACACAAGCATCTACTGT 57.360 33.333 0.00 0.00 0.00 3.55
776 2153 9.734620 CAGTCAAACTTTGTCTATTTTCAATCA 57.265 29.630 1.44 0.00 0.00 2.57
777 2154 9.736023 ACAGTCAAACTTTGTCTATTTTCAATC 57.264 29.630 1.44 0.00 0.00 2.67
778 2155 9.736023 GACAGTCAAACTTTGTCTATTTTCAAT 57.264 29.630 0.00 0.00 38.49 2.57
857 2240 5.292589 GCTAAATCATTTTGTGGCCATCTTG 59.707 40.000 9.72 3.09 0.00 3.02
858 2241 5.422145 GCTAAATCATTTTGTGGCCATCTT 58.578 37.500 9.72 0.00 0.00 2.40
859 2242 4.440525 CGCTAAATCATTTTGTGGCCATCT 60.441 41.667 9.72 0.00 0.00 2.90
861 2244 3.430651 CCGCTAAATCATTTTGTGGCCAT 60.431 43.478 9.72 0.00 38.72 4.40
882 2274 3.594603 ACATATAGATAGCGTGGCACC 57.405 47.619 12.86 4.98 0.00 5.01
899 2291 7.057264 GGAAATAGCTAAGGAAGGAGAAACAT 58.943 38.462 0.00 0.00 0.00 2.71
900 2292 6.215636 AGGAAATAGCTAAGGAAGGAGAAACA 59.784 38.462 0.00 0.00 0.00 2.83
901 2293 6.654959 AGGAAATAGCTAAGGAAGGAGAAAC 58.345 40.000 0.00 0.00 0.00 2.78
902 2294 6.893020 AGGAAATAGCTAAGGAAGGAGAAA 57.107 37.500 0.00 0.00 0.00 2.52
903 2295 6.126739 GGAAGGAAATAGCTAAGGAAGGAGAA 60.127 42.308 0.00 0.00 0.00 2.87
904 2296 5.367060 GGAAGGAAATAGCTAAGGAAGGAGA 59.633 44.000 0.00 0.00 0.00 3.71
905 2297 5.368230 AGGAAGGAAATAGCTAAGGAAGGAG 59.632 44.000 0.00 0.00 0.00 3.69
906 2298 5.289510 AGGAAGGAAATAGCTAAGGAAGGA 58.710 41.667 0.00 0.00 0.00 3.36
907 2299 5.455469 GGAGGAAGGAAATAGCTAAGGAAGG 60.455 48.000 0.00 0.00 0.00 3.46
908 2300 5.455469 GGGAGGAAGGAAATAGCTAAGGAAG 60.455 48.000 0.00 0.00 0.00 3.46
909 2301 4.412528 GGGAGGAAGGAAATAGCTAAGGAA 59.587 45.833 0.00 0.00 0.00 3.36
915 2307 2.413601 GGAGGGAGGAAGGAAATAGCT 58.586 52.381 0.00 0.00 0.00 3.32
916 2308 1.422024 GGGAGGGAGGAAGGAAATAGC 59.578 57.143 0.00 0.00 0.00 2.97
970 2365 4.406649 GGATGATGAAATTGGATGGGTGTT 59.593 41.667 0.00 0.00 0.00 3.32
971 2366 3.962718 GGATGATGAAATTGGATGGGTGT 59.037 43.478 0.00 0.00 0.00 4.16
972 2367 3.962063 TGGATGATGAAATTGGATGGGTG 59.038 43.478 0.00 0.00 0.00 4.61
974 2369 4.476297 TCTGGATGATGAAATTGGATGGG 58.524 43.478 0.00 0.00 0.00 4.00
978 2373 6.266786 CCATTGATCTGGATGATGAAATTGGA 59.733 38.462 0.00 0.00 38.69 3.53
979 2374 6.455647 CCATTGATCTGGATGATGAAATTGG 58.544 40.000 0.00 0.00 38.69 3.16
980 2375 5.926542 GCCATTGATCTGGATGATGAAATTG 59.073 40.000 5.19 0.00 38.69 2.32
981 2376 5.278808 CGCCATTGATCTGGATGATGAAATT 60.279 40.000 5.19 0.00 38.69 1.82
984 2379 3.143728 CGCCATTGATCTGGATGATGAA 58.856 45.455 5.19 0.00 38.69 2.57
985 2380 2.105306 ACGCCATTGATCTGGATGATGA 59.895 45.455 5.19 0.00 38.69 2.92
986 2381 2.483106 GACGCCATTGATCTGGATGATG 59.517 50.000 5.19 1.36 38.69 3.07
987 2382 2.551721 GGACGCCATTGATCTGGATGAT 60.552 50.000 5.19 0.00 38.69 2.45
988 2383 1.202687 GGACGCCATTGATCTGGATGA 60.203 52.381 5.19 0.00 38.69 2.92
989 2384 1.233019 GGACGCCATTGATCTGGATG 58.767 55.000 5.19 1.95 38.69 3.51
990 2385 0.109342 GGGACGCCATTGATCTGGAT 59.891 55.000 5.19 0.00 38.69 3.41
991 2386 1.271127 TGGGACGCCATTGATCTGGA 61.271 55.000 5.19 0.00 38.69 3.86
992 2387 0.394216 TTGGGACGCCATTGATCTGG 60.394 55.000 0.00 0.00 39.45 3.86
993 2388 1.462616 TTTGGGACGCCATTGATCTG 58.537 50.000 0.00 0.00 0.00 2.90
994 2389 2.026641 CATTTGGGACGCCATTGATCT 58.973 47.619 0.00 0.00 0.00 2.75
995 2390 1.750778 ACATTTGGGACGCCATTGATC 59.249 47.619 0.00 0.00 0.00 2.92
996 2391 1.750778 GACATTTGGGACGCCATTGAT 59.249 47.619 0.00 0.00 0.00 2.57
997 2392 1.173043 GACATTTGGGACGCCATTGA 58.827 50.000 0.00 0.00 0.00 2.57
1054 2449 4.244802 GAGAGCGACGGCGAGGAG 62.245 72.222 18.90 2.30 46.35 3.69
1055 2450 4.779966 AGAGAGCGACGGCGAGGA 62.780 66.667 18.90 0.00 46.35 3.71
1074 2469 5.908916 AAGAAAGAAAGAGACACTTACGC 57.091 39.130 0.00 0.00 37.93 4.42
1109 2513 7.052873 CACTCCACCAATTATCATCTCTTCTT 58.947 38.462 0.00 0.00 0.00 2.52
1111 2515 5.762218 CCACTCCACCAATTATCATCTCTTC 59.238 44.000 0.00 0.00 0.00 2.87
1112 2516 5.429762 TCCACTCCACCAATTATCATCTCTT 59.570 40.000 0.00 0.00 0.00 2.85
1114 2518 5.296151 TCCACTCCACCAATTATCATCTC 57.704 43.478 0.00 0.00 0.00 2.75
1115 2519 5.715439 TTCCACTCCACCAATTATCATCT 57.285 39.130 0.00 0.00 0.00 2.90
1116 2520 6.736794 GCAATTCCACTCCACCAATTATCATC 60.737 42.308 0.00 0.00 0.00 2.92
1142 2603 5.188434 TCCTTCTTTTCTTCATCATCGCAT 58.812 37.500 0.00 0.00 0.00 4.73
1143 2604 4.578871 TCCTTCTTTTCTTCATCATCGCA 58.421 39.130 0.00 0.00 0.00 5.10
1144 2605 5.747951 ATCCTTCTTTTCTTCATCATCGC 57.252 39.130 0.00 0.00 0.00 4.58
1174 2645 3.446161 CACCACCTTCATCATCTGCATTT 59.554 43.478 0.00 0.00 0.00 2.32
1176 2647 2.651455 CACCACCTTCATCATCTGCAT 58.349 47.619 0.00 0.00 0.00 3.96
1177 2648 1.340308 CCACCACCTTCATCATCTGCA 60.340 52.381 0.00 0.00 0.00 4.41
1178 2649 1.386533 CCACCACCTTCATCATCTGC 58.613 55.000 0.00 0.00 0.00 4.26
1179 2650 2.020694 GCCCACCACCTTCATCATCTG 61.021 57.143 0.00 0.00 0.00 2.90
1180 2651 0.257039 GCCCACCACCTTCATCATCT 59.743 55.000 0.00 0.00 0.00 2.90
1181 2652 0.753111 GGCCCACCACCTTCATCATC 60.753 60.000 0.00 0.00 35.26 2.92
1182 2653 1.307647 GGCCCACCACCTTCATCAT 59.692 57.895 0.00 0.00 35.26 2.45
1183 2654 2.763215 GGCCCACCACCTTCATCA 59.237 61.111 0.00 0.00 35.26 3.07
1201 2672 2.813908 GGCGTGTACCCGAAGCTG 60.814 66.667 0.63 0.00 0.00 4.24
1262 2733 4.536687 GCCGCACGCCTTGTATGC 62.537 66.667 0.00 0.00 35.96 3.14
1264 2735 4.444838 TCGCCGCACGCCTTGTAT 62.445 61.111 0.00 0.00 43.23 2.29
1495 2966 1.293924 CGTGCCAGTGGATCATCTTC 58.706 55.000 15.20 0.00 0.00 2.87
1790 3261 2.173519 CTTGCCCAGAATGTTCCACAT 58.826 47.619 0.00 0.00 41.31 3.21
1835 3306 1.017177 GGCGCGGTGATGAGTTGTAA 61.017 55.000 8.83 0.00 0.00 2.41
1974 3445 8.573035 CCCTCTGTAAACAAATGTAAGCTTTTA 58.427 33.333 3.20 0.00 0.00 1.52
1975 3446 7.286775 TCCCTCTGTAAACAAATGTAAGCTTTT 59.713 33.333 3.20 0.00 0.00 2.27
1976 3447 6.775629 TCCCTCTGTAAACAAATGTAAGCTTT 59.224 34.615 3.20 0.00 0.00 3.51
1977 3448 6.303839 TCCCTCTGTAAACAAATGTAAGCTT 58.696 36.000 3.48 3.48 0.00 3.74
1978 3449 5.876357 TCCCTCTGTAAACAAATGTAAGCT 58.124 37.500 0.00 0.00 0.00 3.74
1979 3450 5.705905 ACTCCCTCTGTAAACAAATGTAAGC 59.294 40.000 0.00 0.00 0.00 3.09
1980 3451 7.876068 TGTACTCCCTCTGTAAACAAATGTAAG 59.124 37.037 0.00 0.00 0.00 2.34
1981 3452 7.737869 TGTACTCCCTCTGTAAACAAATGTAA 58.262 34.615 0.00 0.00 0.00 2.41
1982 3453 7.305813 TGTACTCCCTCTGTAAACAAATGTA 57.694 36.000 0.00 0.00 0.00 2.29
1983 3454 6.182507 TGTACTCCCTCTGTAAACAAATGT 57.817 37.500 0.00 0.00 0.00 2.71
1984 3455 7.687941 ATTGTACTCCCTCTGTAAACAAATG 57.312 36.000 0.00 0.00 0.00 2.32
1985 3456 9.449719 CTTATTGTACTCCCTCTGTAAACAAAT 57.550 33.333 0.00 0.00 0.00 2.32
1986 3457 7.389607 GCTTATTGTACTCCCTCTGTAAACAAA 59.610 37.037 0.00 0.00 0.00 2.83
1987 3458 6.877322 GCTTATTGTACTCCCTCTGTAAACAA 59.123 38.462 0.00 0.00 0.00 2.83
1988 3459 6.014070 TGCTTATTGTACTCCCTCTGTAAACA 60.014 38.462 0.00 0.00 0.00 2.83
1989 3460 6.403878 TGCTTATTGTACTCCCTCTGTAAAC 58.596 40.000 0.00 0.00 0.00 2.01
1990 3461 6.614694 TGCTTATTGTACTCCCTCTGTAAA 57.385 37.500 0.00 0.00 0.00 2.01
1991 3462 6.439375 TCTTGCTTATTGTACTCCCTCTGTAA 59.561 38.462 0.00 0.00 0.00 2.41
1992 3463 5.955959 TCTTGCTTATTGTACTCCCTCTGTA 59.044 40.000 0.00 0.00 0.00 2.74
1993 3464 4.777896 TCTTGCTTATTGTACTCCCTCTGT 59.222 41.667 0.00 0.00 0.00 3.41
1994 3465 5.112686 GTCTTGCTTATTGTACTCCCTCTG 58.887 45.833 0.00 0.00 0.00 3.35
1995 3466 4.777896 TGTCTTGCTTATTGTACTCCCTCT 59.222 41.667 0.00 0.00 0.00 3.69
1996 3467 5.086104 TGTCTTGCTTATTGTACTCCCTC 57.914 43.478 0.00 0.00 0.00 4.30
1997 3468 5.700402 ATGTCTTGCTTATTGTACTCCCT 57.300 39.130 0.00 0.00 0.00 4.20
1998 3469 6.583562 ACTATGTCTTGCTTATTGTACTCCC 58.416 40.000 0.00 0.00 0.00 4.30
1999 3470 7.378995 CGTACTATGTCTTGCTTATTGTACTCC 59.621 40.741 0.00 0.00 33.73 3.85
2000 3471 7.914346 ACGTACTATGTCTTGCTTATTGTACTC 59.086 37.037 0.00 0.00 33.73 2.59
2001 3472 7.769220 ACGTACTATGTCTTGCTTATTGTACT 58.231 34.615 0.00 0.00 33.73 2.73
2002 3473 7.982371 ACGTACTATGTCTTGCTTATTGTAC 57.018 36.000 0.00 0.00 33.07 2.90
2003 3474 8.896744 AGTACGTACTATGTCTTGCTTATTGTA 58.103 33.333 26.36 0.00 34.13 2.41
2004 3475 7.769220 AGTACGTACTATGTCTTGCTTATTGT 58.231 34.615 26.36 0.00 34.13 2.71
2005 3476 7.378995 GGAGTACGTACTATGTCTTGCTTATTG 59.621 40.741 27.44 0.00 36.50 1.90
2025 3496 0.324091 TGGAACCGAGGAGGGAGTAC 60.324 60.000 0.00 0.00 46.96 2.73
2038 3509 8.077386 TCAAAAACGTTCTTATATTGTGGAACC 58.923 33.333 0.00 0.00 35.90 3.62
2041 3512 8.071368 GTGTCAAAAACGTTCTTATATTGTGGA 58.929 33.333 0.00 0.00 0.00 4.02
2052 3523 7.724305 ACATGTATAGTGTCAAAAACGTTCT 57.276 32.000 0.00 0.00 0.00 3.01
2075 3546 8.918658 TGTACGTAGATGTTTACTCATTTTGAC 58.081 33.333 0.00 0.00 0.00 3.18
2225 3792 3.119193 CCTTGTGGTGTGGTGCAC 58.881 61.111 8.80 8.80 46.97 4.57
2283 4785 1.756333 GCCCACTACCCACCACTTTTT 60.756 52.381 0.00 0.00 0.00 1.94
2284 4786 0.178973 GCCCACTACCCACCACTTTT 60.179 55.000 0.00 0.00 0.00 2.27
2285 4787 1.458927 GCCCACTACCCACCACTTT 59.541 57.895 0.00 0.00 0.00 2.66
2286 4788 2.535331 GGCCCACTACCCACCACTT 61.535 63.158 0.00 0.00 0.00 3.16
2287 4789 2.933834 GGCCCACTACCCACCACT 60.934 66.667 0.00 0.00 0.00 4.00
2288 4790 2.836187 TTGGCCCACTACCCACCAC 61.836 63.158 0.00 0.00 0.00 4.16
2289 4791 2.450699 TTGGCCCACTACCCACCA 60.451 61.111 0.00 0.00 0.00 4.17
2293 4795 1.134189 GTAGATGTTGGCCCACTACCC 60.134 57.143 8.65 0.00 0.00 3.69
2295 4797 3.055385 TCTTGTAGATGTTGGCCCACTAC 60.055 47.826 8.65 10.73 35.47 2.73
2361 4900 1.471676 GCGTCCTGGTGGTTATCTCTG 60.472 57.143 0.00 0.00 34.23 3.35
2362 4901 0.824759 GCGTCCTGGTGGTTATCTCT 59.175 55.000 0.00 0.00 34.23 3.10
2363 4902 0.535335 TGCGTCCTGGTGGTTATCTC 59.465 55.000 0.00 0.00 34.23 2.75
2364 4903 0.537188 CTGCGTCCTGGTGGTTATCT 59.463 55.000 0.00 0.00 34.23 1.98
2367 4906 2.345991 GCTGCGTCCTGGTGGTTA 59.654 61.111 0.00 0.00 34.23 2.85
2400 4943 0.034767 CCTCAATGAGCAAGCCCTCA 60.035 55.000 4.40 2.33 45.16 3.86
2431 4974 0.388520 GCAATCGTTTGGGTGGAAGC 60.389 55.000 8.24 0.00 33.22 3.86
2432 4975 1.068333 CAGCAATCGTTTGGGTGGAAG 60.068 52.381 8.24 0.00 33.22 3.46
2433 4976 0.958091 CAGCAATCGTTTGGGTGGAA 59.042 50.000 8.24 0.00 33.22 3.53
2434 4977 2.639970 CAGCAATCGTTTGGGTGGA 58.360 52.632 8.24 0.00 33.22 4.02
2435 4978 1.586028 CCAGCAATCGTTTGGGTGG 59.414 57.895 8.24 9.51 42.93 4.61
2436 4979 1.176527 ATCCAGCAATCGTTTGGGTG 58.823 50.000 8.24 5.05 33.22 4.61
2437 4980 1.545582 CAATCCAGCAATCGTTTGGGT 59.454 47.619 8.24 0.00 33.22 4.51
2438 4981 1.736696 GCAATCCAGCAATCGTTTGGG 60.737 52.381 8.24 2.35 33.22 4.12
2439 4982 1.203052 AGCAATCCAGCAATCGTTTGG 59.797 47.619 8.24 0.00 36.85 3.28
2440 4983 2.256174 CAGCAATCCAGCAATCGTTTG 58.744 47.619 1.73 1.73 36.85 2.93
2441 4984 1.403249 GCAGCAATCCAGCAATCGTTT 60.403 47.619 0.00 0.00 36.85 3.60
2442 4985 0.171903 GCAGCAATCCAGCAATCGTT 59.828 50.000 0.00 0.00 36.85 3.85
2443 4986 1.805254 GCAGCAATCCAGCAATCGT 59.195 52.632 0.00 0.00 36.85 3.73
2444 4987 1.298116 CGCAGCAATCCAGCAATCG 60.298 57.895 0.00 0.00 36.85 3.34
2445 4988 1.065273 CCGCAGCAATCCAGCAATC 59.935 57.895 0.00 0.00 36.85 2.67
2446 4989 3.072486 GCCGCAGCAATCCAGCAAT 62.072 57.895 0.00 0.00 39.53 3.56
2447 4990 3.751246 GCCGCAGCAATCCAGCAA 61.751 61.111 0.00 0.00 39.53 3.91
2462 5005 3.762247 ATGCATGTTGTGGCCGCC 61.762 61.111 15.15 1.04 0.00 6.13
2463 5006 2.507547 CATGCATGTTGTGGCCGC 60.508 61.111 18.91 10.11 0.00 6.53
2464 5007 2.182284 CCATGCATGTTGTGGCCG 59.818 61.111 24.58 3.50 0.00 6.13
2467 5010 1.545136 TGTTAGCCATGCATGTTGTGG 59.455 47.619 24.58 12.35 36.09 4.17
2468 5011 2.988493 GTTGTTAGCCATGCATGTTGTG 59.012 45.455 24.58 10.82 0.00 3.33
2469 5012 2.627221 TGTTGTTAGCCATGCATGTTGT 59.373 40.909 24.58 11.33 0.00 3.32
2470 5013 3.300852 TGTTGTTAGCCATGCATGTTG 57.699 42.857 24.58 11.90 0.00 3.33
2471 5014 3.306225 CCTTGTTGTTAGCCATGCATGTT 60.306 43.478 24.58 14.88 0.00 2.71
2472 5015 2.231964 CCTTGTTGTTAGCCATGCATGT 59.768 45.455 24.58 10.36 0.00 3.21
2473 5016 2.417651 CCCTTGTTGTTAGCCATGCATG 60.418 50.000 20.19 20.19 0.00 4.06
2474 5017 1.826720 CCCTTGTTGTTAGCCATGCAT 59.173 47.619 0.00 0.00 0.00 3.96
2475 5018 1.255882 CCCTTGTTGTTAGCCATGCA 58.744 50.000 0.00 0.00 0.00 3.96
2476 5019 0.108662 GCCCTTGTTGTTAGCCATGC 60.109 55.000 0.00 0.00 0.00 4.06
2477 5020 0.532115 GGCCCTTGTTGTTAGCCATG 59.468 55.000 0.00 0.00 43.32 3.66
2478 5021 2.976099 GGCCCTTGTTGTTAGCCAT 58.024 52.632 0.00 0.00 43.32 4.40
2479 5022 4.511838 GGCCCTTGTTGTTAGCCA 57.488 55.556 0.00 0.00 43.32 4.75
2480 5023 0.539669 AGTGGCCCTTGTTGTTAGCC 60.540 55.000 0.00 0.00 44.13 3.93
2481 5024 2.084546 CTAGTGGCCCTTGTTGTTAGC 58.915 52.381 0.00 0.00 0.00 3.09
2482 5025 2.711542 CCTAGTGGCCCTTGTTGTTAG 58.288 52.381 0.00 0.00 0.00 2.34
2483 5026 2.871096 CCTAGTGGCCCTTGTTGTTA 57.129 50.000 0.00 0.00 0.00 2.41
2484 5027 3.745723 CCTAGTGGCCCTTGTTGTT 57.254 52.632 0.00 0.00 0.00 2.83
2495 5038 0.904865 TGTCTGGGAGTGCCTAGTGG 60.905 60.000 1.06 0.00 42.93 4.00
2496 5039 1.198713 ATGTCTGGGAGTGCCTAGTG 58.801 55.000 1.06 0.00 42.93 2.74
2497 5040 2.389715 GTATGTCTGGGAGTGCCTAGT 58.610 52.381 1.06 0.00 42.93 2.57
2498 5041 1.338337 CGTATGTCTGGGAGTGCCTAG 59.662 57.143 1.06 0.00 43.71 3.02
2499 5042 1.064240 TCGTATGTCTGGGAGTGCCTA 60.064 52.381 1.06 0.00 0.00 3.93
2500 5043 0.324368 TCGTATGTCTGGGAGTGCCT 60.324 55.000 1.06 0.00 0.00 4.75
2501 5044 0.753262 ATCGTATGTCTGGGAGTGCC 59.247 55.000 0.00 0.00 0.00 5.01
2502 5045 1.137086 ACATCGTATGTCTGGGAGTGC 59.863 52.381 0.00 0.00 39.92 4.40
2513 5056 2.352342 TGCATGCTGTTGACATCGTATG 59.648 45.455 20.33 0.00 0.00 2.39
2514 5057 2.631267 TGCATGCTGTTGACATCGTAT 58.369 42.857 20.33 0.00 0.00 3.06
2515 5058 2.091852 TGCATGCTGTTGACATCGTA 57.908 45.000 20.33 0.00 0.00 3.43
2516 5059 1.456296 ATGCATGCTGTTGACATCGT 58.544 45.000 20.33 0.00 0.00 3.73
2517 5060 2.610833 AGTATGCATGCTGTTGACATCG 59.389 45.455 17.13 0.00 0.00 3.84
2518 5061 3.302935 CGAGTATGCATGCTGTTGACATC 60.303 47.826 22.78 4.28 0.00 3.06
2519 5062 2.610833 CGAGTATGCATGCTGTTGACAT 59.389 45.455 22.78 4.38 0.00 3.06
2520 5063 2.001872 CGAGTATGCATGCTGTTGACA 58.998 47.619 22.78 0.00 0.00 3.58
2521 5064 1.267732 GCGAGTATGCATGCTGTTGAC 60.268 52.381 22.78 6.21 34.15 3.18
2522 5065 1.009078 GCGAGTATGCATGCTGTTGA 58.991 50.000 22.78 0.00 34.15 3.18
2523 5066 0.315625 CGCGAGTATGCATGCTGTTG 60.316 55.000 22.78 12.24 34.15 3.33
2524 5067 1.431488 CCGCGAGTATGCATGCTGTT 61.431 55.000 22.78 6.43 34.15 3.16
2525 5068 1.884464 CCGCGAGTATGCATGCTGT 60.884 57.895 22.78 10.26 34.15 4.40
2526 5069 1.592400 TCCGCGAGTATGCATGCTG 60.592 57.895 22.78 14.57 34.15 4.41
2527 5070 1.592669 GTCCGCGAGTATGCATGCT 60.593 57.895 17.87 17.87 34.15 3.79
2528 5071 2.931386 GTCCGCGAGTATGCATGC 59.069 61.111 11.82 11.82 34.15 4.06
2529 5072 2.302952 CCGTCCGCGAGTATGCATG 61.303 63.158 8.23 0.00 41.33 4.06
2530 5073 2.027605 CCGTCCGCGAGTATGCAT 59.972 61.111 8.23 3.79 41.33 3.96
2531 5074 4.865761 GCCGTCCGCGAGTATGCA 62.866 66.667 8.23 0.00 41.33 3.96
2554 5097 3.730761 CACTGGCCTTGAGCACGC 61.731 66.667 3.32 0.00 46.50 5.34
2555 5098 3.730761 GCACTGGCCTTGAGCACG 61.731 66.667 3.32 0.00 46.50 5.34
2556 5099 1.900498 AAGCACTGGCCTTGAGCAC 60.900 57.895 17.20 0.00 46.50 4.40
2557 5100 1.900016 CAAGCACTGGCCTTGAGCA 60.900 57.895 17.20 0.00 46.50 4.26
2558 5101 2.960170 CAAGCACTGGCCTTGAGC 59.040 61.111 3.32 7.48 42.56 4.26
2559 5102 2.960170 GCAAGCACTGGCCTTGAG 59.040 61.111 3.32 0.00 42.56 3.02
2560 5103 2.979676 CGCAAGCACTGGCCTTGA 60.980 61.111 3.32 0.00 42.56 3.02
2561 5104 4.047059 CCGCAAGCACTGGCCTTG 62.047 66.667 3.32 1.80 42.56 3.61
2562 5105 3.790416 TTCCGCAAGCACTGGCCTT 62.790 57.895 3.32 0.00 42.56 4.35
2563 5106 4.269523 TTCCGCAAGCACTGGCCT 62.270 61.111 3.32 0.00 42.56 5.19
2564 5107 3.741476 CTTCCGCAAGCACTGGCC 61.741 66.667 0.00 0.00 42.56 5.36
2565 5108 3.741476 CCTTCCGCAAGCACTGGC 61.741 66.667 0.00 0.00 41.61 4.85
2566 5109 3.741476 GCCTTCCGCAAGCACTGG 61.741 66.667 0.00 0.00 37.47 4.00
2567 5110 4.093952 CGCCTTCCGCAAGCACTG 62.094 66.667 0.00 0.00 37.30 3.66
2572 5115 3.423154 GACACCGCCTTCCGCAAG 61.423 66.667 0.00 0.00 37.30 4.01
2573 5116 3.545124 ATGACACCGCCTTCCGCAA 62.545 57.895 0.00 0.00 37.30 4.85
2574 5117 4.015406 ATGACACCGCCTTCCGCA 62.015 61.111 0.00 0.00 37.30 5.69
2575 5118 3.499737 CATGACACCGCCTTCCGC 61.500 66.667 0.00 0.00 35.03 5.54
2576 5119 3.499737 GCATGACACCGCCTTCCG 61.500 66.667 0.00 0.00 0.00 4.30
2577 5120 0.463654 TATGCATGACACCGCCTTCC 60.464 55.000 10.16 0.00 0.00 3.46
2578 5121 0.657840 GTATGCATGACACCGCCTTC 59.342 55.000 10.16 0.00 0.00 3.46
2579 5122 0.253044 AGTATGCATGACACCGCCTT 59.747 50.000 10.16 0.00 0.00 4.35
2580 5123 0.179073 GAGTATGCATGACACCGCCT 60.179 55.000 10.16 0.00 0.00 5.52
2581 5124 1.490693 CGAGTATGCATGACACCGCC 61.491 60.000 10.16 0.00 0.00 6.13
2582 5125 1.927210 CGAGTATGCATGACACCGC 59.073 57.895 10.16 0.00 0.00 5.68
2583 5126 1.811217 CGCGAGTATGCATGACACCG 61.811 60.000 10.16 11.57 34.15 4.94
2584 5127 1.490693 CCGCGAGTATGCATGACACC 61.491 60.000 8.23 0.00 34.15 4.16
2585 5128 0.527600 TCCGCGAGTATGCATGACAC 60.528 55.000 8.23 0.00 34.15 3.67
2586 5129 0.527600 GTCCGCGAGTATGCATGACA 60.528 55.000 8.23 0.00 36.69 3.58
2587 5130 1.540607 CGTCCGCGAGTATGCATGAC 61.541 60.000 8.23 5.23 41.33 3.06
2588 5131 1.299089 CGTCCGCGAGTATGCATGA 60.299 57.895 8.23 0.00 41.33 3.07
2589 5132 2.302952 CCGTCCGCGAGTATGCATG 61.303 63.158 8.23 0.00 41.33 4.06
2590 5133 2.027605 CCGTCCGCGAGTATGCAT 59.972 61.111 8.23 3.79 41.33 3.96
2591 5134 4.865761 GCCGTCCGCGAGTATGCA 62.866 66.667 8.23 0.00 41.33 3.96
2614 5157 3.730761 CACTGGCCTTGAGCACGC 61.731 66.667 3.32 0.00 46.50 5.34
2615 5158 3.730761 GCACTGGCCTTGAGCACG 61.731 66.667 3.32 0.00 46.50 5.34
2633 5176 3.958147 ATGACACCGCCTTCCGCAG 62.958 63.158 0.00 0.00 37.30 5.18
2634 5177 4.015406 ATGACACCGCCTTCCGCA 62.015 61.111 0.00 0.00 37.30 5.69
2635 5178 3.499737 CATGACACCGCCTTCCGC 61.500 66.667 0.00 0.00 35.03 5.54
2636 5179 3.499737 GCATGACACCGCCTTCCG 61.500 66.667 0.00 0.00 0.00 4.30
2637 5180 0.463654 TATGCATGACACCGCCTTCC 60.464 55.000 10.16 0.00 0.00 3.46
2638 5181 0.657840 GTATGCATGACACCGCCTTC 59.342 55.000 10.16 0.00 0.00 3.46
2639 5182 0.253044 AGTATGCATGACACCGCCTT 59.747 50.000 10.16 0.00 0.00 4.35
2640 5183 0.179073 GAGTATGCATGACACCGCCT 60.179 55.000 10.16 0.00 0.00 5.52
2641 5184 1.490693 CGAGTATGCATGACACCGCC 61.491 60.000 10.16 0.00 0.00 6.13
2642 5185 1.927210 CGAGTATGCATGACACCGC 59.073 57.895 10.16 0.00 0.00 5.68
2643 5186 1.811217 CGCGAGTATGCATGACACCG 61.811 60.000 10.16 11.57 34.15 4.94
2644 5187 1.490693 CCGCGAGTATGCATGACACC 61.491 60.000 8.23 0.00 34.15 4.16
2645 5188 0.527600 TCCGCGAGTATGCATGACAC 60.528 55.000 8.23 0.00 34.15 3.67
2646 5189 0.527600 GTCCGCGAGTATGCATGACA 60.528 55.000 8.23 0.00 36.69 3.58
2647 5190 1.540607 CGTCCGCGAGTATGCATGAC 61.541 60.000 8.23 5.23 41.33 3.06
2648 5191 1.299089 CGTCCGCGAGTATGCATGA 60.299 57.895 8.23 0.00 41.33 3.07
2649 5192 2.302952 CCGTCCGCGAGTATGCATG 61.303 63.158 8.23 0.00 41.33 4.06
2650 5193 2.027605 CCGTCCGCGAGTATGCAT 59.972 61.111 8.23 3.79 41.33 3.96
2651 5194 4.865761 GCCGTCCGCGAGTATGCA 62.866 66.667 8.23 0.00 41.33 3.96
2674 5217 3.730761 CACTGGCCTTGAGCACGC 61.731 66.667 3.32 0.00 46.50 5.34
2675 5218 3.730761 GCACTGGCCTTGAGCACG 61.731 66.667 3.32 0.00 46.50 5.34
2693 5236 3.958147 ATGACACCGCCTTCCGCAG 62.958 63.158 0.00 0.00 37.30 5.18
2694 5237 4.015406 ATGACACCGCCTTCCGCA 62.015 61.111 0.00 0.00 37.30 5.69
2695 5238 3.499737 CATGACACCGCCTTCCGC 61.500 66.667 0.00 0.00 35.03 5.54
2696 5239 3.499737 GCATGACACCGCCTTCCG 61.500 66.667 0.00 0.00 0.00 4.30
2697 5240 0.463654 TATGCATGACACCGCCTTCC 60.464 55.000 10.16 0.00 0.00 3.46
2698 5241 0.657840 GTATGCATGACACCGCCTTC 59.342 55.000 10.16 0.00 0.00 3.46
2699 5242 0.253044 AGTATGCATGACACCGCCTT 59.747 50.000 10.16 0.00 0.00 4.35
2700 5243 0.179073 GAGTATGCATGACACCGCCT 60.179 55.000 10.16 0.00 0.00 5.52
2701 5244 1.490693 CGAGTATGCATGACACCGCC 61.491 60.000 10.16 0.00 0.00 6.13
2702 5245 1.927210 CGAGTATGCATGACACCGC 59.073 57.895 10.16 0.00 0.00 5.68
2703 5246 1.811217 CGCGAGTATGCATGACACCG 61.811 60.000 10.16 11.57 34.15 4.94
2704 5247 1.490693 CCGCGAGTATGCATGACACC 61.491 60.000 8.23 0.00 34.15 4.16
2705 5248 0.527600 TCCGCGAGTATGCATGACAC 60.528 55.000 8.23 0.00 34.15 3.67
2706 5249 0.527600 GTCCGCGAGTATGCATGACA 60.528 55.000 8.23 0.00 36.69 3.58
2707 5250 1.540607 CGTCCGCGAGTATGCATGAC 61.541 60.000 8.23 5.23 41.33 3.06
2708 5251 1.299089 CGTCCGCGAGTATGCATGA 60.299 57.895 8.23 0.00 41.33 3.07
2709 5252 2.302952 CCGTCCGCGAGTATGCATG 61.303 63.158 8.23 0.00 41.33 4.06
2710 5253 2.027605 CCGTCCGCGAGTATGCAT 59.972 61.111 8.23 3.79 41.33 3.96
2711 5254 4.865761 GCCGTCCGCGAGTATGCA 62.866 66.667 8.23 0.00 41.33 3.96
2734 5277 3.730761 CACTGGCCTTGAGCACGC 61.731 66.667 3.32 0.00 46.50 5.34
2735 5278 3.730761 GCACTGGCCTTGAGCACG 61.731 66.667 3.32 0.00 46.50 5.34
2870 5413 3.958147 ATGACACCGCCTTCCGCAG 62.958 63.158 0.00 0.00 37.30 5.18
2871 5414 4.015406 ATGACACCGCCTTCCGCA 62.015 61.111 0.00 0.00 37.30 5.69
2872 5415 3.499737 CATGACACCGCCTTCCGC 61.500 66.667 0.00 0.00 35.03 5.54
2873 5416 3.499737 GCATGACACCGCCTTCCG 61.500 66.667 0.00 0.00 0.00 4.30
2874 5417 0.463654 TATGCATGACACCGCCTTCC 60.464 55.000 10.16 0.00 0.00 3.46
2875 5418 0.657840 GTATGCATGACACCGCCTTC 59.342 55.000 10.16 0.00 0.00 3.46
2876 5419 0.253044 AGTATGCATGACACCGCCTT 59.747 50.000 10.16 0.00 0.00 4.35
2877 5420 0.179073 GAGTATGCATGACACCGCCT 60.179 55.000 10.16 0.00 0.00 5.52
2878 5421 1.490693 CGAGTATGCATGACACCGCC 61.491 60.000 10.16 0.00 0.00 6.13
2879 5422 1.927210 CGAGTATGCATGACACCGC 59.073 57.895 10.16 0.00 0.00 5.68
2880 5423 1.811217 CGCGAGTATGCATGACACCG 61.811 60.000 10.16 11.57 34.15 4.94
2881 5424 1.490693 CCGCGAGTATGCATGACACC 61.491 60.000 8.23 0.00 34.15 4.16
2882 5425 0.527600 TCCGCGAGTATGCATGACAC 60.528 55.000 8.23 0.00 34.15 3.67
2883 5426 0.527600 GTCCGCGAGTATGCATGACA 60.528 55.000 8.23 0.00 36.69 3.58
2884 5427 1.540607 CGTCCGCGAGTATGCATGAC 61.541 60.000 8.23 5.23 41.33 3.06
2885 5428 1.299089 CGTCCGCGAGTATGCATGA 60.299 57.895 8.23 0.00 41.33 3.07
2886 5429 2.302952 CCGTCCGCGAGTATGCATG 61.303 63.158 8.23 0.00 41.33 4.06
2887 5430 2.027605 CCGTCCGCGAGTATGCAT 59.972 61.111 8.23 3.79 41.33 3.96
2888 5431 4.865761 GCCGTCCGCGAGTATGCA 62.866 66.667 8.23 0.00 41.33 3.96
2911 5454 3.730761 CACTGGCCTTGAGCACGC 61.731 66.667 3.32 0.00 46.50 5.34
2912 5455 3.730761 GCACTGGCCTTGAGCACG 61.731 66.667 3.32 0.00 46.50 5.34
2930 5473 4.680237 TCACACCGCCTTCCGCAG 62.680 66.667 0.00 0.00 37.30 5.18
2931 5474 4.680237 CTCACACCGCCTTCCGCA 62.680 66.667 0.00 0.00 37.30 5.69
2932 5475 4.373116 TCTCACACCGCCTTCCGC 62.373 66.667 0.00 0.00 35.03 5.54
2933 5476 2.125912 CTCTCACACCGCCTTCCG 60.126 66.667 0.00 0.00 0.00 4.30
2934 5477 2.435059 GCTCTCACACCGCCTTCC 60.435 66.667 0.00 0.00 0.00 3.46
2935 5478 2.811317 CGCTCTCACACCGCCTTC 60.811 66.667 0.00 0.00 0.00 3.46
2936 5479 4.379243 CCGCTCTCACACCGCCTT 62.379 66.667 0.00 0.00 0.00 4.35
2940 5483 3.414700 GTTGCCGCTCTCACACCG 61.415 66.667 0.00 0.00 0.00 4.94
2941 5484 3.050275 GGTTGCCGCTCTCACACC 61.050 66.667 0.00 0.00 0.00 4.16
2942 5485 2.280797 TGGTTGCCGCTCTCACAC 60.281 61.111 0.00 0.00 0.00 3.82
2943 5486 2.031012 CTGGTTGCCGCTCTCACA 59.969 61.111 0.00 0.00 0.00 3.58
2944 5487 3.426568 GCTGGTTGCCGCTCTCAC 61.427 66.667 0.00 0.00 35.15 3.51
2945 5488 3.889134 CTGCTGGTTGCCGCTCTCA 62.889 63.158 0.00 0.00 42.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.