Multiple sequence alignment - TraesCS1A01G442600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G442600 chr1A 100.000 5735 0 0 1 5735 591158532 591152798 0.000000e+00 10591.0
1 TraesCS1A01G442600 chr1B 91.462 4310 169 69 950 5124 688996907 689001152 0.000000e+00 5736.0
2 TraesCS1A01G442600 chr1B 88.669 353 27 8 5255 5602 689001332 689001676 8.890000e-113 418.0
3 TraesCS1A01G442600 chr1B 94.416 197 5 3 664 859 688996407 688996598 1.210000e-76 298.0
4 TraesCS1A01G442600 chr1B 96.296 135 3 2 5602 5735 685295134 685295001 2.690000e-53 220.0
5 TraesCS1A01G442600 chr1B 81.685 273 34 7 274 545 688995759 688996016 4.500000e-51 213.0
6 TraesCS1A01G442600 chr1B 81.818 99 3 5 548 645 688996040 688996124 1.030000e-07 69.4
7 TraesCS1A01G442600 chr1D 93.083 3643 163 41 1668 5257 492649615 492646009 0.000000e+00 5249.0
8 TraesCS1A01G442600 chr1D 91.164 464 22 9 997 1441 492650481 492650018 3.800000e-171 612.0
9 TraesCS1A01G442600 chr1D 86.364 396 30 15 579 969 492651177 492650801 1.490000e-110 411.0
10 TraesCS1A01G442600 chr1D 92.578 256 12 4 5274 5527 492645910 492645660 1.520000e-95 361.0
11 TraesCS1A01G442600 chr1D 80.323 310 39 13 2739 3048 208420339 208420052 1.250000e-51 215.0
12 TraesCS1A01G442600 chr1D 90.076 131 9 4 5606 5735 492645624 492645497 3.550000e-37 167.0
13 TraesCS1A01G442600 chr1D 75.676 222 18 17 1462 1669 492649945 492649746 1.710000e-10 78.7
14 TraesCS1A01G442600 chr5A 80.868 1014 126 26 3101 4085 231065636 231064662 0.000000e+00 736.0
15 TraesCS1A01G442600 chr7B 82.030 946 66 47 684 1584 689888190 689887304 0.000000e+00 710.0
16 TraesCS1A01G442600 chr7B 82.993 294 38 4 3192 3485 417057255 417057536 7.370000e-64 255.0
17 TraesCS1A01G442600 chr7A 82.510 789 63 32 804 1559 37300739 37299993 1.750000e-174 623.0
18 TraesCS1A01G442600 chr7A 88.136 59 6 1 5548 5605 686596581 686596523 1.030000e-07 69.4
19 TraesCS1A01G442600 chr3D 84.927 617 70 16 3219 3831 504066482 504067079 2.290000e-168 603.0
20 TraesCS1A01G442600 chr3D 87.601 371 37 5 2806 3170 504066113 504066480 6.870000e-114 422.0
21 TraesCS1A01G442600 chr3D 88.043 92 10 1 992 1082 275994903 275994994 2.190000e-19 108.0
22 TraesCS1A01G442600 chr3A 84.554 628 76 12 3216 3831 642384652 642385270 2.290000e-168 603.0
23 TraesCS1A01G442600 chr3A 86.010 386 43 7 2806 3184 642384283 642384664 2.490000e-108 403.0
24 TraesCS1A01G442600 chr3A 75.439 456 85 20 2957 3404 364196176 364195740 4.530000e-46 196.0
25 TraesCS1A01G442600 chr3A 86.957 92 11 1 992 1082 364198278 364198187 1.020000e-17 102.0
26 TraesCS1A01G442600 chr2A 85.095 369 48 4 2806 3170 526300332 526300697 2.520000e-98 370.0
27 TraesCS1A01G442600 chr6B 79.032 248 31 11 1884 2123 600606612 600606378 3.580000e-32 150.0
28 TraesCS1A01G442600 chr2B 79.032 248 31 11 1884 2123 623525433 623525199 3.580000e-32 150.0
29 TraesCS1A01G442600 chr3B 78.629 248 32 12 1884 2123 168299162 168299396 1.670000e-30 145.0
30 TraesCS1A01G442600 chr3B 88.043 92 10 1 992 1082 375500308 375500217 2.190000e-19 108.0
31 TraesCS1A01G442600 chr3B 83.871 93 14 1 990 1081 451845924 451845832 2.850000e-13 87.9
32 TraesCS1A01G442600 chrUn 77.174 276 40 14 1857 2123 316173971 316174232 7.750000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G442600 chr1A 591152798 591158532 5734 True 10591.00 10591 100.000000 1 5735 1 chr1A.!!$R1 5734
1 TraesCS1A01G442600 chr1B 688995759 689001676 5917 False 1346.88 5736 87.610000 274 5602 5 chr1B.!!$F1 5328
2 TraesCS1A01G442600 chr1D 492645497 492651177 5680 True 1146.45 5249 88.156833 579 5735 6 chr1D.!!$R2 5156
3 TraesCS1A01G442600 chr5A 231064662 231065636 974 True 736.00 736 80.868000 3101 4085 1 chr5A.!!$R1 984
4 TraesCS1A01G442600 chr7B 689887304 689888190 886 True 710.00 710 82.030000 684 1584 1 chr7B.!!$R1 900
5 TraesCS1A01G442600 chr7A 37299993 37300739 746 True 623.00 623 82.510000 804 1559 1 chr7A.!!$R1 755
6 TraesCS1A01G442600 chr3D 504066113 504067079 966 False 512.50 603 86.264000 2806 3831 2 chr3D.!!$F2 1025
7 TraesCS1A01G442600 chr3A 642384283 642385270 987 False 503.00 603 85.282000 2806 3831 2 chr3A.!!$F1 1025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 270 0.031994 ACCTTGTTGACGGCATTTGC 59.968 50.0 0.00 0.00 41.14 3.68 F
524 526 0.034186 AAATGCTTGGCCATCGGAGA 60.034 50.0 6.09 0.00 45.75 3.71 F
526 528 0.034186 ATGCTTGGCCATCGGAGAAA 60.034 50.0 6.09 0.00 43.58 2.52 F
632 656 0.112412 GTTGGCTTGGGAAAGGGAGA 59.888 55.0 0.00 0.00 0.00 3.71 F
2381 3450 0.036164 AACGCTACATTCCACTGGCA 59.964 50.0 0.00 0.00 0.00 4.92 F
2870 3947 1.404843 ACTTAGACTCCCGAGGCATC 58.595 55.0 0.00 0.00 39.50 3.91 F
3625 4724 0.673644 GCGCCATGGTCAGTACTGTT 60.674 55.0 21.99 3.95 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 2893 0.655733 AACCACGCAGAAACAAGACG 59.344 50.000 0.00 0.0 0.00 4.18 R
2361 3430 0.447801 GCCAGTGGAATGTAGCGTTG 59.552 55.000 15.20 0.0 0.00 4.10 R
2364 3433 0.659427 CATGCCAGTGGAATGTAGCG 59.341 55.000 20.94 0.0 34.11 4.26 R
2617 3694 8.428186 AAAATGCTTATGCCATGAATGTAAAG 57.572 30.769 0.00 0.0 38.71 1.85 R
3586 4685 1.003355 CGGTGGAGCACTGGTCATT 60.003 57.895 10.34 0.0 37.12 2.57 R
4122 5293 1.015109 TTCAGCGCACGGTTGTTAAA 58.985 45.000 11.47 0.0 0.00 1.52 R
5235 6440 0.035056 ATAGCACACCACTTCAGCCC 60.035 55.000 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.394674 TGACTGTTATTCCTTGTCGCA 57.605 42.857 0.00 0.00 0.00 5.10
21 22 3.734463 TGACTGTTATTCCTTGTCGCAA 58.266 40.909 0.00 0.00 0.00 4.85
22 23 3.745975 TGACTGTTATTCCTTGTCGCAAG 59.254 43.478 11.23 11.23 0.00 4.01
23 24 2.484264 ACTGTTATTCCTTGTCGCAAGC 59.516 45.455 12.35 1.64 37.18 4.01
24 25 2.744202 CTGTTATTCCTTGTCGCAAGCT 59.256 45.455 12.35 0.00 37.18 3.74
25 26 2.742053 TGTTATTCCTTGTCGCAAGCTC 59.258 45.455 12.35 2.61 37.18 4.09
26 27 3.003480 GTTATTCCTTGTCGCAAGCTCT 58.997 45.455 12.35 3.86 37.18 4.09
27 28 1.731720 ATTCCTTGTCGCAAGCTCTC 58.268 50.000 12.35 0.00 37.18 3.20
28 29 0.681733 TTCCTTGTCGCAAGCTCTCT 59.318 50.000 12.35 0.00 37.18 3.10
29 30 0.037882 TCCTTGTCGCAAGCTCTCTG 60.038 55.000 12.35 0.00 37.18 3.35
30 31 1.633852 CCTTGTCGCAAGCTCTCTGC 61.634 60.000 12.35 0.00 43.29 4.26
31 32 1.633852 CTTGTCGCAAGCTCTCTGCC 61.634 60.000 3.34 0.00 44.23 4.85
32 33 2.047844 GTCGCAAGCTCTCTGCCA 60.048 61.111 3.34 0.00 44.23 4.92
33 34 1.449246 GTCGCAAGCTCTCTGCCAT 60.449 57.895 3.34 0.00 44.23 4.40
34 35 1.449070 TCGCAAGCTCTCTGCCATG 60.449 57.895 3.34 0.00 44.23 3.66
35 36 1.744368 CGCAAGCTCTCTGCCATGT 60.744 57.895 3.34 0.00 44.23 3.21
36 37 1.703438 CGCAAGCTCTCTGCCATGTC 61.703 60.000 3.34 0.00 44.23 3.06
37 38 0.675837 GCAAGCTCTCTGCCATGTCA 60.676 55.000 0.00 0.00 44.23 3.58
38 39 1.085091 CAAGCTCTCTGCCATGTCAC 58.915 55.000 0.00 0.00 44.23 3.67
39 40 0.035630 AAGCTCTCTGCCATGTCACC 60.036 55.000 0.00 0.00 44.23 4.02
40 41 0.908656 AGCTCTCTGCCATGTCACCT 60.909 55.000 0.00 0.00 44.23 4.00
41 42 0.743701 GCTCTCTGCCATGTCACCTG 60.744 60.000 0.00 0.00 35.15 4.00
42 43 0.612229 CTCTCTGCCATGTCACCTGT 59.388 55.000 0.00 0.00 0.00 4.00
43 44 0.610174 TCTCTGCCATGTCACCTGTC 59.390 55.000 0.00 0.00 0.00 3.51
44 45 0.392193 CTCTGCCATGTCACCTGTCC 60.392 60.000 0.00 0.00 0.00 4.02
45 46 0.837691 TCTGCCATGTCACCTGTCCT 60.838 55.000 0.00 0.00 0.00 3.85
46 47 0.392193 CTGCCATGTCACCTGTCCTC 60.392 60.000 0.00 0.00 0.00 3.71
47 48 1.078143 GCCATGTCACCTGTCCTCC 60.078 63.158 0.00 0.00 0.00 4.30
48 49 1.557269 GCCATGTCACCTGTCCTCCT 61.557 60.000 0.00 0.00 0.00 3.69
49 50 0.539051 CCATGTCACCTGTCCTCCTC 59.461 60.000 0.00 0.00 0.00 3.71
50 51 0.174389 CATGTCACCTGTCCTCCTCG 59.826 60.000 0.00 0.00 0.00 4.63
51 52 1.608717 ATGTCACCTGTCCTCCTCGC 61.609 60.000 0.00 0.00 0.00 5.03
52 53 2.680352 TCACCTGTCCTCCTCGCC 60.680 66.667 0.00 0.00 0.00 5.54
53 54 3.775654 CACCTGTCCTCCTCGCCC 61.776 72.222 0.00 0.00 0.00 6.13
68 69 3.387947 CCCCGGCGACACCTAGTT 61.388 66.667 9.30 0.00 35.61 2.24
69 70 2.183555 CCCGGCGACACCTAGTTC 59.816 66.667 9.30 0.00 35.61 3.01
70 71 2.348888 CCCGGCGACACCTAGTTCT 61.349 63.158 9.30 0.00 35.61 3.01
71 72 1.590147 CCGGCGACACCTAGTTCTT 59.410 57.895 9.30 0.00 35.61 2.52
72 73 0.458025 CCGGCGACACCTAGTTCTTC 60.458 60.000 9.30 0.00 35.61 2.87
73 74 0.797249 CGGCGACACCTAGTTCTTCG 60.797 60.000 0.00 0.00 35.61 3.79
74 75 0.524862 GGCGACACCTAGTTCTTCGA 59.475 55.000 4.90 0.00 34.51 3.71
75 76 1.134560 GGCGACACCTAGTTCTTCGAT 59.865 52.381 4.90 0.00 34.51 3.59
76 77 2.186076 GCGACACCTAGTTCTTCGATG 58.814 52.381 4.90 0.00 0.00 3.84
77 78 2.798680 CGACACCTAGTTCTTCGATGG 58.201 52.381 0.00 0.00 0.00 3.51
78 79 2.163815 CGACACCTAGTTCTTCGATGGT 59.836 50.000 0.00 0.00 0.00 3.55
80 81 3.594603 CACCTAGTTCTTCGATGGTGT 57.405 47.619 0.00 0.00 39.80 4.16
81 82 3.512680 CACCTAGTTCTTCGATGGTGTC 58.487 50.000 0.00 0.00 39.80 3.67
82 83 2.496470 ACCTAGTTCTTCGATGGTGTCC 59.504 50.000 0.00 0.00 0.00 4.02
83 84 2.761208 CCTAGTTCTTCGATGGTGTCCT 59.239 50.000 0.00 0.00 0.00 3.85
84 85 3.195825 CCTAGTTCTTCGATGGTGTCCTT 59.804 47.826 0.00 0.00 0.00 3.36
85 86 3.320673 AGTTCTTCGATGGTGTCCTTC 57.679 47.619 0.00 0.00 0.00 3.46
86 87 2.900546 AGTTCTTCGATGGTGTCCTTCT 59.099 45.455 0.00 0.00 0.00 2.85
87 88 3.056465 AGTTCTTCGATGGTGTCCTTCTC 60.056 47.826 0.00 0.00 0.00 2.87
88 89 1.825474 TCTTCGATGGTGTCCTTCTCC 59.175 52.381 0.00 0.00 0.00 3.71
89 90 1.550524 CTTCGATGGTGTCCTTCTCCA 59.449 52.381 0.00 0.00 42.73 3.86
91 92 1.482182 TCGATGGTGTCCTTCTCCATG 59.518 52.381 6.23 0.00 46.43 3.66
92 93 1.208052 CGATGGTGTCCTTCTCCATGT 59.792 52.381 6.23 0.00 46.43 3.21
93 94 2.355108 CGATGGTGTCCTTCTCCATGTT 60.355 50.000 6.23 0.00 46.43 2.71
94 95 2.566833 TGGTGTCCTTCTCCATGTTG 57.433 50.000 0.00 0.00 35.16 3.33
95 96 1.168714 GGTGTCCTTCTCCATGTTGC 58.831 55.000 0.00 0.00 0.00 4.17
96 97 1.271597 GGTGTCCTTCTCCATGTTGCT 60.272 52.381 0.00 0.00 0.00 3.91
97 98 2.079925 GTGTCCTTCTCCATGTTGCTC 58.920 52.381 0.00 0.00 0.00 4.26
98 99 1.699083 TGTCCTTCTCCATGTTGCTCA 59.301 47.619 0.00 0.00 0.00 4.26
99 100 2.306805 TGTCCTTCTCCATGTTGCTCAT 59.693 45.455 0.00 0.00 37.22 2.90
100 101 2.941720 GTCCTTCTCCATGTTGCTCATC 59.058 50.000 0.00 0.00 34.09 2.92
101 102 2.573009 TCCTTCTCCATGTTGCTCATCA 59.427 45.455 0.00 0.00 34.09 3.07
102 103 2.681848 CCTTCTCCATGTTGCTCATCAC 59.318 50.000 0.00 0.00 34.09 3.06
103 104 2.408271 TCTCCATGTTGCTCATCACC 57.592 50.000 0.00 0.00 34.09 4.02
104 105 1.911357 TCTCCATGTTGCTCATCACCT 59.089 47.619 0.00 0.00 34.09 4.00
105 106 2.306805 TCTCCATGTTGCTCATCACCTT 59.693 45.455 0.00 0.00 34.09 3.50
106 107 2.422479 CTCCATGTTGCTCATCACCTTG 59.578 50.000 0.00 0.00 34.09 3.61
107 108 2.040145 TCCATGTTGCTCATCACCTTGA 59.960 45.455 0.00 0.00 34.09 3.02
108 109 2.163010 CCATGTTGCTCATCACCTTGAC 59.837 50.000 0.00 0.00 34.09 3.18
109 110 2.936919 TGTTGCTCATCACCTTGACT 57.063 45.000 0.00 0.00 0.00 3.41
110 111 2.771089 TGTTGCTCATCACCTTGACTC 58.229 47.619 0.00 0.00 0.00 3.36
111 112 2.104622 TGTTGCTCATCACCTTGACTCA 59.895 45.455 0.00 0.00 0.00 3.41
112 113 2.462456 TGCTCATCACCTTGACTCAC 57.538 50.000 0.00 0.00 0.00 3.51
113 114 1.337167 TGCTCATCACCTTGACTCACG 60.337 52.381 0.00 0.00 0.00 4.35
114 115 1.354040 CTCATCACCTTGACTCACGC 58.646 55.000 0.00 0.00 0.00 5.34
115 116 0.037326 TCATCACCTTGACTCACGCC 60.037 55.000 0.00 0.00 0.00 5.68
116 117 0.320683 CATCACCTTGACTCACGCCA 60.321 55.000 0.00 0.00 0.00 5.69
117 118 0.396435 ATCACCTTGACTCACGCCAA 59.604 50.000 0.00 0.00 0.00 4.52
118 119 0.249868 TCACCTTGACTCACGCCAAG 60.250 55.000 0.00 0.00 39.43 3.61
119 120 0.249868 CACCTTGACTCACGCCAAGA 60.250 55.000 0.00 0.00 41.56 3.02
120 121 0.249911 ACCTTGACTCACGCCAAGAC 60.250 55.000 0.00 0.00 41.56 3.01
121 122 0.249868 CCTTGACTCACGCCAAGACA 60.250 55.000 0.00 0.00 41.56 3.41
122 123 1.581934 CTTGACTCACGCCAAGACAA 58.418 50.000 0.00 0.00 41.56 3.18
123 124 1.528586 CTTGACTCACGCCAAGACAAG 59.471 52.381 9.00 9.00 41.56 3.16
124 125 0.750249 TGACTCACGCCAAGACAAGA 59.250 50.000 0.00 0.00 0.00 3.02
125 126 1.138069 TGACTCACGCCAAGACAAGAA 59.862 47.619 0.00 0.00 0.00 2.52
126 127 1.795286 GACTCACGCCAAGACAAGAAG 59.205 52.381 0.00 0.00 0.00 2.85
127 128 1.412710 ACTCACGCCAAGACAAGAAGA 59.587 47.619 0.00 0.00 0.00 2.87
128 129 1.795286 CTCACGCCAAGACAAGAAGAC 59.205 52.381 0.00 0.00 0.00 3.01
129 130 1.138069 TCACGCCAAGACAAGAAGACA 59.862 47.619 0.00 0.00 0.00 3.41
130 131 1.939934 CACGCCAAGACAAGAAGACAA 59.060 47.619 0.00 0.00 0.00 3.18
131 132 1.940613 ACGCCAAGACAAGAAGACAAC 59.059 47.619 0.00 0.00 0.00 3.32
132 133 1.939934 CGCCAAGACAAGAAGACAACA 59.060 47.619 0.00 0.00 0.00 3.33
133 134 2.549754 CGCCAAGACAAGAAGACAACAT 59.450 45.455 0.00 0.00 0.00 2.71
134 135 3.607775 CGCCAAGACAAGAAGACAACATG 60.608 47.826 0.00 0.00 0.00 3.21
135 136 3.316308 GCCAAGACAAGAAGACAACATGT 59.684 43.478 0.00 0.00 0.00 3.21
136 137 4.790766 GCCAAGACAAGAAGACAACATGTG 60.791 45.833 0.00 0.00 0.00 3.21
137 138 4.576053 CCAAGACAAGAAGACAACATGTGA 59.424 41.667 0.00 0.00 0.00 3.58
138 139 5.504665 CCAAGACAAGAAGACAACATGTGAC 60.505 44.000 0.00 0.00 0.00 3.67
139 140 5.028549 AGACAAGAAGACAACATGTGACT 57.971 39.130 0.00 0.00 33.36 3.41
140 141 5.431765 AGACAAGAAGACAACATGTGACTT 58.568 37.500 0.00 5.63 43.60 3.01
141 142 5.295292 AGACAAGAAGACAACATGTGACTTG 59.705 40.000 14.22 15.85 41.45 3.16
142 143 4.201950 ACAAGAAGACAACATGTGACTTGC 60.202 41.667 14.22 8.25 41.45 4.01
143 144 3.813443 AGAAGACAACATGTGACTTGCT 58.187 40.909 14.22 9.72 41.45 3.91
144 145 4.960938 AGAAGACAACATGTGACTTGCTA 58.039 39.130 14.22 0.00 41.45 3.49
145 146 5.555017 AGAAGACAACATGTGACTTGCTAT 58.445 37.500 14.22 0.00 41.45 2.97
146 147 5.410746 AGAAGACAACATGTGACTTGCTATG 59.589 40.000 14.22 2.75 41.45 2.23
147 148 3.438087 AGACAACATGTGACTTGCTATGC 59.562 43.478 0.00 0.00 0.00 3.14
148 149 3.415212 ACAACATGTGACTTGCTATGCT 58.585 40.909 0.00 0.00 0.00 3.79
149 150 3.822735 ACAACATGTGACTTGCTATGCTT 59.177 39.130 0.00 0.00 0.00 3.91
150 151 4.163552 CAACATGTGACTTGCTATGCTTG 58.836 43.478 0.00 0.00 0.00 4.01
151 152 3.415212 ACATGTGACTTGCTATGCTTGT 58.585 40.909 0.00 0.00 0.00 3.16
152 153 3.822735 ACATGTGACTTGCTATGCTTGTT 59.177 39.130 0.00 0.00 0.00 2.83
153 154 3.902261 TGTGACTTGCTATGCTTGTTG 57.098 42.857 0.00 0.00 0.00 3.33
154 155 2.553602 TGTGACTTGCTATGCTTGTTGG 59.446 45.455 0.00 0.00 0.00 3.77
155 156 1.541147 TGACTTGCTATGCTTGTTGGC 59.459 47.619 0.00 0.00 0.00 4.52
156 157 1.541147 GACTTGCTATGCTTGTTGGCA 59.459 47.619 0.00 0.00 46.63 4.92
157 158 1.270550 ACTTGCTATGCTTGTTGGCAC 59.729 47.619 0.00 0.00 45.36 5.01
158 159 1.270274 CTTGCTATGCTTGTTGGCACA 59.730 47.619 0.00 0.00 45.36 4.57
159 160 0.883153 TGCTATGCTTGTTGGCACAG 59.117 50.000 0.00 0.00 45.36 3.66
160 161 0.883833 GCTATGCTTGTTGGCACAGT 59.116 50.000 0.00 0.00 45.36 3.55
161 162 1.135575 GCTATGCTTGTTGGCACAGTC 60.136 52.381 0.00 0.00 45.36 3.51
162 163 2.153645 CTATGCTTGTTGGCACAGTCA 58.846 47.619 0.00 0.00 45.36 3.41
163 164 0.956633 ATGCTTGTTGGCACAGTCAG 59.043 50.000 0.00 0.00 45.36 3.51
164 165 0.394216 TGCTTGTTGGCACAGTCAGT 60.394 50.000 0.00 0.00 42.39 3.41
176 177 2.292267 ACAGTCAGTGAGTTGCTTTGG 58.708 47.619 0.00 0.00 0.00 3.28
177 178 1.002033 CAGTCAGTGAGTTGCTTTGGC 60.002 52.381 0.00 0.00 39.26 4.52
214 215 9.613957 TGTAAAACATGTTTATTGTTGTATCCG 57.386 29.630 23.53 0.00 37.38 4.18
215 216 9.068008 GTAAAACATGTTTATTGTTGTATCCGG 57.932 33.333 23.53 0.00 37.38 5.14
216 217 6.827586 AACATGTTTATTGTTGTATCCGGT 57.172 33.333 4.92 0.00 36.02 5.28
217 218 6.827586 ACATGTTTATTGTTGTATCCGGTT 57.172 33.333 0.00 0.00 0.00 4.44
218 219 6.616947 ACATGTTTATTGTTGTATCCGGTTG 58.383 36.000 0.00 0.00 0.00 3.77
219 220 6.207810 ACATGTTTATTGTTGTATCCGGTTGT 59.792 34.615 0.00 0.00 0.00 3.32
220 221 6.243811 TGTTTATTGTTGTATCCGGTTGTC 57.756 37.500 0.00 0.00 0.00 3.18
221 222 5.763698 TGTTTATTGTTGTATCCGGTTGTCA 59.236 36.000 0.00 0.00 0.00 3.58
222 223 6.431543 TGTTTATTGTTGTATCCGGTTGTCAT 59.568 34.615 0.00 0.00 0.00 3.06
223 224 7.040340 TGTTTATTGTTGTATCCGGTTGTCATT 60.040 33.333 0.00 0.00 0.00 2.57
224 225 5.975693 ATTGTTGTATCCGGTTGTCATTT 57.024 34.783 0.00 0.00 0.00 2.32
225 226 4.757799 TGTTGTATCCGGTTGTCATTTG 57.242 40.909 0.00 0.00 0.00 2.32
226 227 4.390264 TGTTGTATCCGGTTGTCATTTGA 58.610 39.130 0.00 0.00 0.00 2.69
227 228 4.454161 TGTTGTATCCGGTTGTCATTTGAG 59.546 41.667 0.00 0.00 0.00 3.02
228 229 4.280436 TGTATCCGGTTGTCATTTGAGT 57.720 40.909 0.00 0.00 0.00 3.41
229 230 5.408880 TGTATCCGGTTGTCATTTGAGTA 57.591 39.130 0.00 0.00 0.00 2.59
230 231 5.416083 TGTATCCGGTTGTCATTTGAGTAG 58.584 41.667 0.00 0.00 0.00 2.57
231 232 4.553330 ATCCGGTTGTCATTTGAGTAGT 57.447 40.909 0.00 0.00 0.00 2.73
232 233 5.670792 ATCCGGTTGTCATTTGAGTAGTA 57.329 39.130 0.00 0.00 0.00 1.82
233 234 5.471556 TCCGGTTGTCATTTGAGTAGTAA 57.528 39.130 0.00 0.00 0.00 2.24
234 235 5.232463 TCCGGTTGTCATTTGAGTAGTAAC 58.768 41.667 0.00 0.00 0.00 2.50
235 236 5.011329 TCCGGTTGTCATTTGAGTAGTAACT 59.989 40.000 0.00 0.00 39.21 2.24
236 237 6.209192 TCCGGTTGTCATTTGAGTAGTAACTA 59.791 38.462 0.00 0.00 35.56 2.24
237 238 6.869913 CCGGTTGTCATTTGAGTAGTAACTAA 59.130 38.462 0.00 0.00 35.56 2.24
238 239 7.548075 CCGGTTGTCATTTGAGTAGTAACTAAT 59.452 37.037 0.00 0.00 35.56 1.73
239 240 9.577110 CGGTTGTCATTTGAGTAGTAACTAATA 57.423 33.333 0.00 0.00 35.56 0.98
258 259 9.442047 AACTAATAGAAGATCTTGACCTTGTTG 57.558 33.333 14.00 0.18 0.00 3.33
259 260 8.816894 ACTAATAGAAGATCTTGACCTTGTTGA 58.183 33.333 14.00 0.00 0.00 3.18
260 261 7.913674 AATAGAAGATCTTGACCTTGTTGAC 57.086 36.000 14.00 0.00 0.00 3.18
261 262 4.310769 AGAAGATCTTGACCTTGTTGACG 58.689 43.478 14.00 0.00 0.00 4.35
262 263 3.045601 AGATCTTGACCTTGTTGACGG 57.954 47.619 0.00 0.00 0.00 4.79
263 264 1.464997 GATCTTGACCTTGTTGACGGC 59.535 52.381 0.00 0.00 0.00 5.68
264 265 0.179234 TCTTGACCTTGTTGACGGCA 59.821 50.000 0.00 0.00 0.00 5.69
265 266 1.202758 TCTTGACCTTGTTGACGGCAT 60.203 47.619 0.00 0.00 0.00 4.40
266 267 1.608590 CTTGACCTTGTTGACGGCATT 59.391 47.619 0.00 0.00 0.00 3.56
267 268 1.686355 TGACCTTGTTGACGGCATTT 58.314 45.000 0.00 0.00 0.00 2.32
268 269 1.336440 TGACCTTGTTGACGGCATTTG 59.664 47.619 0.00 0.00 0.00 2.32
269 270 0.031994 ACCTTGTTGACGGCATTTGC 59.968 50.000 0.00 0.00 41.14 3.68
270 271 0.314935 CCTTGTTGACGGCATTTGCT 59.685 50.000 0.00 0.00 41.70 3.91
289 290 1.817357 TGCACCAAATGAGAGCAGAG 58.183 50.000 0.00 0.00 0.00 3.35
290 291 0.450983 GCACCAAATGAGAGCAGAGC 59.549 55.000 0.00 0.00 0.00 4.09
291 292 1.949547 GCACCAAATGAGAGCAGAGCT 60.950 52.381 0.00 0.00 43.88 4.09
293 294 1.350351 ACCAAATGAGAGCAGAGCTGT 59.650 47.619 0.00 0.00 39.88 4.40
294 295 2.568956 ACCAAATGAGAGCAGAGCTGTA 59.431 45.455 0.00 0.00 39.88 2.74
306 307 3.618507 GCAGAGCTGTAATCCTTGTCAGT 60.619 47.826 0.00 0.00 0.00 3.41
307 308 4.573900 CAGAGCTGTAATCCTTGTCAGTT 58.426 43.478 0.00 0.00 0.00 3.16
310 311 3.327757 AGCTGTAATCCTTGTCAGTTCCA 59.672 43.478 0.00 0.00 0.00 3.53
311 312 3.437049 GCTGTAATCCTTGTCAGTTCCAC 59.563 47.826 0.00 0.00 0.00 4.02
312 313 4.641396 CTGTAATCCTTGTCAGTTCCACA 58.359 43.478 0.00 0.00 0.00 4.17
328 329 3.449918 TCCACACATGAGGAGGTCATAA 58.550 45.455 0.00 0.00 44.73 1.90
340 341 2.435805 GAGGTCATAAGCACCCTCATCA 59.564 50.000 0.00 0.00 42.51 3.07
346 347 5.931146 GTCATAAGCACCCTCATCAGATAAG 59.069 44.000 0.00 0.00 0.00 1.73
347 348 5.604231 TCATAAGCACCCTCATCAGATAAGT 59.396 40.000 0.00 0.00 0.00 2.24
348 349 4.414337 AAGCACCCTCATCAGATAAGTC 57.586 45.455 0.00 0.00 0.00 3.01
350 351 2.748605 CACCCTCATCAGATAAGTCGC 58.251 52.381 0.00 0.00 0.00 5.19
423 425 1.270094 ACATCGACGGAAGCAGAAACA 60.270 47.619 0.00 0.00 0.00 2.83
424 426 1.126846 CATCGACGGAAGCAGAAACAC 59.873 52.381 0.00 0.00 0.00 3.32
426 428 1.204312 GACGGAAGCAGAAACACGC 59.796 57.895 0.00 0.00 0.00 5.34
428 430 1.205064 CGGAAGCAGAAACACGCAG 59.795 57.895 0.00 0.00 0.00 5.18
431 433 0.110464 GAAGCAGAAACACGCAGCTC 60.110 55.000 0.00 0.00 33.83 4.09
432 434 0.815213 AAGCAGAAACACGCAGCTCA 60.815 50.000 0.00 0.00 33.83 4.26
433 435 0.604780 AGCAGAAACACGCAGCTCAT 60.605 50.000 0.00 0.00 0.00 2.90
434 436 0.179205 GCAGAAACACGCAGCTCATC 60.179 55.000 0.00 0.00 0.00 2.92
435 437 0.445436 CAGAAACACGCAGCTCATCC 59.555 55.000 0.00 0.00 0.00 3.51
436 438 1.016130 AGAAACACGCAGCTCATCCG 61.016 55.000 0.00 0.00 0.00 4.18
437 439 1.005037 AAACACGCAGCTCATCCGA 60.005 52.632 0.00 0.00 0.00 4.55
438 440 1.016130 AAACACGCAGCTCATCCGAG 61.016 55.000 0.00 0.00 42.66 4.63
439 441 2.584418 CACGCAGCTCATCCGAGG 60.584 66.667 0.00 0.00 39.88 4.63
456 458 2.869801 CGAGGCAACAACAACAGTAAGA 59.130 45.455 0.00 0.00 41.41 2.10
459 461 4.460263 AGGCAACAACAACAGTAAGATGA 58.540 39.130 0.00 0.00 41.41 2.92
466 468 3.937814 ACAACAGTAAGATGATTCCGCA 58.062 40.909 0.00 0.00 0.00 5.69
483 485 2.956386 CGCAAGGTCGAATGTAAATCG 58.044 47.619 0.00 0.00 41.53 3.34
487 489 3.175109 AGGTCGAATGTAAATCGTCCC 57.825 47.619 8.23 4.54 45.53 4.46
488 490 1.856597 GGTCGAATGTAAATCGTCCCG 59.143 52.381 0.00 0.00 40.89 5.14
502 504 1.796459 CGTCCCGTGAAACTACCAAAG 59.204 52.381 0.00 0.00 31.75 2.77
510 512 4.085107 CGTGAAACTACCAAAGCAAAATGC 60.085 41.667 0.00 0.00 38.18 3.56
523 525 0.819582 AAAATGCTTGGCCATCGGAG 59.180 50.000 6.09 0.84 0.00 4.63
524 526 0.034186 AAATGCTTGGCCATCGGAGA 60.034 50.000 6.09 0.00 45.75 3.71
525 527 0.034186 AATGCTTGGCCATCGGAGAA 60.034 50.000 6.09 0.00 43.58 2.87
526 528 0.034186 ATGCTTGGCCATCGGAGAAA 60.034 50.000 6.09 0.00 43.58 2.52
527 529 0.960364 TGCTTGGCCATCGGAGAAAC 60.960 55.000 6.09 0.00 43.58 2.78
528 530 0.678048 GCTTGGCCATCGGAGAAACT 60.678 55.000 6.09 0.00 43.58 2.66
545 547 7.414540 CGGAGAAACTAGAATTCCTTTTGATGG 60.415 40.741 0.65 0.00 0.00 3.51
571 594 5.405935 CCAAACTAAAAATGGGAGGAAGG 57.594 43.478 0.00 0.00 0.00 3.46
572 595 4.838423 CCAAACTAAAAATGGGAGGAAGGT 59.162 41.667 0.00 0.00 0.00 3.50
573 596 5.279456 CCAAACTAAAAATGGGAGGAAGGTG 60.279 44.000 0.00 0.00 0.00 4.00
574 597 5.333566 AACTAAAAATGGGAGGAAGGTGA 57.666 39.130 0.00 0.00 0.00 4.02
575 598 5.333566 ACTAAAAATGGGAGGAAGGTGAA 57.666 39.130 0.00 0.00 0.00 3.18
576 599 5.711698 ACTAAAAATGGGAGGAAGGTGAAA 58.288 37.500 0.00 0.00 0.00 2.69
577 600 5.775195 ACTAAAAATGGGAGGAAGGTGAAAG 59.225 40.000 0.00 0.00 0.00 2.62
578 601 4.469469 AAAATGGGAGGAAGGTGAAAGA 57.531 40.909 0.00 0.00 0.00 2.52
581 604 2.921221 TGGGAGGAAGGTGAAAGAGAT 58.079 47.619 0.00 0.00 0.00 2.75
602 625 2.880268 TGGTGAAAGAGATGTTGTGCTG 59.120 45.455 0.00 0.00 0.00 4.41
632 656 0.112412 GTTGGCTTGGGAAAGGGAGA 59.888 55.000 0.00 0.00 0.00 3.71
742 1028 0.463116 CCGGGTTCCCCAGTATTTCG 60.463 60.000 0.00 0.00 45.83 3.46
795 1081 2.262915 GGTCAGGTCAGGTGCTCG 59.737 66.667 0.00 0.00 0.00 5.03
871 1159 3.686045 GATCGAGCCCTAGCCCCG 61.686 72.222 0.00 0.00 41.25 5.73
917 1214 2.601966 GCCCCGATCCGATCCTCT 60.602 66.667 2.69 0.00 0.00 3.69
920 1217 1.979693 CCCGATCCGATCCTCTCCC 60.980 68.421 2.69 0.00 0.00 4.30
923 1220 0.963355 CGATCCGATCCTCTCCCTCC 60.963 65.000 2.69 0.00 0.00 4.30
924 1221 0.613572 GATCCGATCCTCTCCCTCCC 60.614 65.000 0.00 0.00 0.00 4.30
925 1222 2.100525 ATCCGATCCTCTCCCTCCCC 62.101 65.000 0.00 0.00 0.00 4.81
926 1223 2.784654 CCGATCCTCTCCCTCCCCT 61.785 68.421 0.00 0.00 0.00 4.79
927 1224 1.228737 CGATCCTCTCCCTCCCCTC 60.229 68.421 0.00 0.00 0.00 4.30
1132 1960 1.548269 CCCAAAGCCATCGCCTTTTTA 59.452 47.619 0.00 0.00 34.57 1.52
1173 2004 2.263077 CAAATTCCGTCTCCGTCTCTG 58.737 52.381 0.00 0.00 0.00 3.35
1241 2072 0.612453 GTGAGTTCCTCCGTCCCTCT 60.612 60.000 0.00 0.00 0.00 3.69
1345 2190 3.199677 CGAATTGCCATGCCATGATTTT 58.800 40.909 6.18 0.00 0.00 1.82
1369 2214 0.788391 GCGTCGGATTAATAAGGCCG 59.212 55.000 9.81 9.81 44.83 6.13
1411 2256 3.063997 CCGCTTGTTAATTCCTGTAGCTG 59.936 47.826 0.00 0.00 0.00 4.24
1519 2440 1.063166 GCTGCTGCTGCCGAAATAC 59.937 57.895 19.30 0.00 38.71 1.89
1520 2441 1.647545 GCTGCTGCTGCCGAAATACA 61.648 55.000 19.30 0.00 38.71 2.29
1555 2476 6.668541 AAGAGATGGAATACACAAATGTCG 57.331 37.500 0.00 0.00 40.48 4.35
1570 2506 0.321564 TGTCGATGCCCCTCTGTTTG 60.322 55.000 0.00 0.00 0.00 2.93
1608 2544 6.112058 AGGATTCATTTGCTCAGTCTCTTAC 58.888 40.000 0.00 0.00 0.00 2.34
1610 2546 3.849911 TCATTTGCTCAGTCTCTTACCG 58.150 45.455 0.00 0.00 0.00 4.02
1612 2548 0.966179 TTGCTCAGTCTCTTACCGCA 59.034 50.000 0.00 0.00 0.00 5.69
1614 2550 1.067565 TGCTCAGTCTCTTACCGCAAG 60.068 52.381 0.00 0.00 35.38 4.01
1615 2551 1.634702 CTCAGTCTCTTACCGCAAGC 58.365 55.000 0.00 0.00 33.94 4.01
1616 2552 1.203523 CTCAGTCTCTTACCGCAAGCT 59.796 52.381 0.00 0.00 33.94 3.74
1617 2553 1.618837 TCAGTCTCTTACCGCAAGCTT 59.381 47.619 0.00 0.00 33.94 3.74
1618 2554 1.728971 CAGTCTCTTACCGCAAGCTTG 59.271 52.381 22.44 22.44 33.94 4.01
1619 2555 1.344763 AGTCTCTTACCGCAAGCTTGT 59.655 47.619 26.55 10.62 33.94 3.16
1620 2556 2.561419 AGTCTCTTACCGCAAGCTTGTA 59.439 45.455 26.55 9.58 33.94 2.41
1621 2557 3.006537 AGTCTCTTACCGCAAGCTTGTAA 59.993 43.478 26.55 16.12 33.94 2.41
1622 2558 3.933332 GTCTCTTACCGCAAGCTTGTAAT 59.067 43.478 26.55 14.60 33.94 1.89
1690 2758 2.533942 GGAACACACAAATGTTTCGCAC 59.466 45.455 0.00 0.00 42.89 5.34
1700 2768 5.472137 ACAAATGTTTCGCACCAGTATAGTT 59.528 36.000 0.00 0.00 0.00 2.24
1701 2769 5.545658 AATGTTTCGCACCAGTATAGTTG 57.454 39.130 0.00 0.00 0.00 3.16
1733 2802 4.775780 TCACTTTTCTGTAGGCTAGCCTTA 59.224 41.667 40.02 26.96 45.70 2.69
1824 2893 2.611292 CCGAGGTGATGCTCTTTGATTC 59.389 50.000 0.00 0.00 0.00 2.52
1979 3048 4.164221 TGGTCCAGTCTCTTTTCTCTTGTT 59.836 41.667 0.00 0.00 0.00 2.83
1980 3049 5.126779 GGTCCAGTCTCTTTTCTCTTGTTT 58.873 41.667 0.00 0.00 0.00 2.83
1981 3050 6.126883 TGGTCCAGTCTCTTTTCTCTTGTTTA 60.127 38.462 0.00 0.00 0.00 2.01
2114 3183 1.977293 GCCCAAGCCTCGAGGATCTT 61.977 60.000 35.69 24.81 37.39 2.40
2138 3207 3.195396 TCAGTTTTTGCAACAGGAAGCTT 59.805 39.130 0.00 0.00 0.00 3.74
2186 3255 4.675510 CTGATCAAATGGTATGCAACACC 58.324 43.478 12.76 12.76 36.54 4.16
2232 3301 5.765182 ACTTTGGTCTCTTTCGTTTCATCAT 59.235 36.000 0.00 0.00 0.00 2.45
2240 3309 5.009631 TCTTTCGTTTCATCATGTGGGATT 58.990 37.500 0.00 0.00 0.00 3.01
2242 3311 4.700268 TCGTTTCATCATGTGGGATTTG 57.300 40.909 0.00 0.00 0.00 2.32
2245 3314 5.418524 TCGTTTCATCATGTGGGATTTGAAT 59.581 36.000 0.00 0.00 0.00 2.57
2246 3315 6.071447 TCGTTTCATCATGTGGGATTTGAATT 60.071 34.615 0.00 0.00 0.00 2.17
2361 3430 1.550524 GGGAAAAGGGCAAATCAGGTC 59.449 52.381 0.00 0.00 0.00 3.85
2364 3433 3.554960 GGAAAAGGGCAAATCAGGTCAAC 60.555 47.826 0.00 0.00 0.00 3.18
2380 3449 0.447801 CAACGCTACATTCCACTGGC 59.552 55.000 0.00 0.00 0.00 4.85
2381 3450 0.036164 AACGCTACATTCCACTGGCA 59.964 50.000 0.00 0.00 0.00 4.92
2421 3490 8.507249 GGATGTATTATTGGTGTTCTTATCTGC 58.493 37.037 0.00 0.00 0.00 4.26
2589 3658 7.549839 ACAGTATATTGTCAAAGTTACGGCTA 58.450 34.615 0.00 0.00 0.00 3.93
2617 3694 4.764679 TGATGTTGCCACACATAACTTC 57.235 40.909 0.00 0.00 37.52 3.01
2670 3747 2.309613 TGCCTGAGTTTTGCACTGATT 58.690 42.857 0.00 0.00 35.01 2.57
2671 3748 3.485394 TGCCTGAGTTTTGCACTGATTA 58.515 40.909 0.00 0.00 35.01 1.75
2672 3749 4.081406 TGCCTGAGTTTTGCACTGATTAT 58.919 39.130 0.00 0.00 35.01 1.28
2853 3930 9.305555 TGTACTCCTTTATTCTGTAACTGTACT 57.694 33.333 0.00 0.00 0.00 2.73
2870 3947 1.404843 ACTTAGACTCCCGAGGCATC 58.595 55.000 0.00 0.00 39.50 3.91
2924 4001 8.677300 TCTTACCTTTCATGCATTAATCTGTTC 58.323 33.333 0.00 0.00 0.00 3.18
3045 4124 3.953874 TGTTGACAATAACCACACGTG 57.046 42.857 15.48 15.48 0.00 4.49
3188 4276 1.714794 CCACTTCAACTGAGGTAGCG 58.285 55.000 0.00 0.00 32.28 4.26
3493 4586 1.848652 ATGCTGCAAATTGCTCTCCT 58.151 45.000 19.34 0.00 45.31 3.69
3497 4591 3.573538 TGCTGCAAATTGCTCTCCTTTTA 59.426 39.130 19.34 0.00 45.31 1.52
3586 4685 6.366061 CGATTCTCAAGTATCAACAGTCACAA 59.634 38.462 0.00 0.00 0.00 3.33
3622 4721 2.184322 CGCGCCATGGTCAGTACT 59.816 61.111 14.67 0.00 0.00 2.73
3623 4722 2.167219 CGCGCCATGGTCAGTACTG 61.167 63.158 17.17 17.17 0.00 2.74
3625 4724 0.673644 GCGCCATGGTCAGTACTGTT 60.674 55.000 21.99 3.95 0.00 3.16
3627 4726 1.739067 GCCATGGTCAGTACTGTTCC 58.261 55.000 21.99 22.63 0.00 3.62
3628 4727 1.279271 GCCATGGTCAGTACTGTTCCT 59.721 52.381 26.77 16.54 0.00 3.36
3630 4729 2.093447 CCATGGTCAGTACTGTTCCTCC 60.093 54.545 26.77 19.93 0.00 4.30
3631 4730 2.696526 TGGTCAGTACTGTTCCTCCT 57.303 50.000 26.77 0.00 0.00 3.69
3654 4761 1.532505 CCTTAATGCTGCGCACATGAC 60.533 52.381 20.86 4.83 43.04 3.06
3677 4784 4.651994 GATTCATGTCTTACCGTTTGCTG 58.348 43.478 0.00 0.00 0.00 4.41
3754 4869 3.580895 TGGCAAATAGACAGTCAGGTACA 59.419 43.478 2.66 0.00 0.00 2.90
3833 4954 7.710907 TGCAAGGCAATAAGTTAGTATCTGTAG 59.289 37.037 0.00 0.00 34.76 2.74
3940 5069 7.744715 CAGGTTGAGATTACAAAATGTTCGTAC 59.255 37.037 0.00 0.00 0.00 3.67
3948 5077 8.937634 ATTACAAAATGTTCGTACTAGTAGGG 57.062 34.615 19.65 8.34 0.00 3.53
3996 5145 3.088532 TGCTTTGTTCTGTTGAGTTGGT 58.911 40.909 0.00 0.00 0.00 3.67
3997 5146 3.509575 TGCTTTGTTCTGTTGAGTTGGTT 59.490 39.130 0.00 0.00 0.00 3.67
3998 5147 4.702612 TGCTTTGTTCTGTTGAGTTGGTTA 59.297 37.500 0.00 0.00 0.00 2.85
3999 5148 5.184096 TGCTTTGTTCTGTTGAGTTGGTTAA 59.816 36.000 0.00 0.00 0.00 2.01
4000 5149 6.127479 TGCTTTGTTCTGTTGAGTTGGTTAAT 60.127 34.615 0.00 0.00 0.00 1.40
4001 5150 6.756542 GCTTTGTTCTGTTGAGTTGGTTAATT 59.243 34.615 0.00 0.00 0.00 1.40
4002 5151 7.254084 GCTTTGTTCTGTTGAGTTGGTTAATTG 60.254 37.037 0.00 0.00 0.00 2.32
4003 5152 6.767524 TGTTCTGTTGAGTTGGTTAATTGT 57.232 33.333 0.00 0.00 0.00 2.71
4004 5153 7.867305 TGTTCTGTTGAGTTGGTTAATTGTA 57.133 32.000 0.00 0.00 0.00 2.41
4005 5154 8.458573 TGTTCTGTTGAGTTGGTTAATTGTAT 57.541 30.769 0.00 0.00 0.00 2.29
4006 5155 8.349245 TGTTCTGTTGAGTTGGTTAATTGTATG 58.651 33.333 0.00 0.00 0.00 2.39
4007 5156 8.349983 GTTCTGTTGAGTTGGTTAATTGTATGT 58.650 33.333 0.00 0.00 0.00 2.29
4008 5157 9.562408 TTCTGTTGAGTTGGTTAATTGTATGTA 57.438 29.630 0.00 0.00 0.00 2.29
4009 5158 9.733556 TCTGTTGAGTTGGTTAATTGTATGTAT 57.266 29.630 0.00 0.00 0.00 2.29
4014 5163 9.483916 TGAGTTGGTTAATTGTATGTATATCCG 57.516 33.333 0.00 0.00 0.00 4.18
4015 5164 8.842358 AGTTGGTTAATTGTATGTATATCCGG 57.158 34.615 0.00 0.00 0.00 5.14
4046 5195 8.882199 CGTTTAAATGATAATCACATAAGCGTG 58.118 33.333 0.79 0.00 33.80 5.34
4085 5234 6.998074 TGTATGATAATGAACCCATTGAGACC 59.002 38.462 0.00 0.00 42.55 3.85
4103 5261 1.308998 CCAGTCGCAGTTTGGTCTTT 58.691 50.000 0.00 0.00 0.00 2.52
4104 5262 1.002468 CCAGTCGCAGTTTGGTCTTTG 60.002 52.381 0.00 0.00 0.00 2.77
4112 5283 2.903547 TTTGGTCTTTGCCTCGCGC 61.904 57.895 0.00 0.00 38.31 6.86
4122 5293 2.106683 GCCTCGCGCCTTTATGTGT 61.107 57.895 0.00 0.00 0.00 3.72
4136 5307 2.392933 ATGTGTTTAACAACCGTGCG 57.607 45.000 0.00 0.00 43.61 5.34
4257 5428 1.896660 GGCCAAACAGAAGTCGCCA 60.897 57.895 0.00 0.00 35.52 5.69
4450 5629 2.484889 AGTTCTCCAGTTCGACTTTGC 58.515 47.619 0.00 0.00 0.00 3.68
4743 5922 1.229359 CCACTACTAGGCCCCGAGA 59.771 63.158 0.00 0.00 0.00 4.04
4850 6033 8.208718 TGGTCTTCTTTATAACGAATGAATGG 57.791 34.615 4.99 0.00 0.00 3.16
5142 6344 1.001048 TGCTGCTGTTGATTCTGTTGC 60.001 47.619 0.00 0.00 0.00 4.17
5144 6346 1.610038 CTGCTGTTGATTCTGTTGCCA 59.390 47.619 0.00 0.00 0.00 4.92
5165 6367 3.630892 AAGCTGAGATGATTGACTGCT 57.369 42.857 0.00 0.00 38.70 4.24
5194 6396 8.857216 CAGATTTGCATTTCATTCTAGTTTGTC 58.143 33.333 0.00 0.00 0.00 3.18
5216 6421 0.458025 GGCTTGAGAATTGCTGCTGC 60.458 55.000 8.89 8.89 40.20 5.25
5225 6430 6.500910 TGAGAATTGCTGCTGCTTATTTATG 58.499 36.000 17.00 0.00 40.48 1.90
5268 6558 6.586082 GTGGTGTGCTATTCCTTGTAAAAATG 59.414 38.462 0.00 0.00 0.00 2.32
5285 6575 8.637986 TGTAAAAATGAAGTAACAAATCCAGCT 58.362 29.630 0.00 0.00 0.00 4.24
5345 6635 1.202915 TCTTGGAGCTGTTCATGCCAA 60.203 47.619 0.00 0.00 37.13 4.52
5351 6642 2.751259 GAGCTGTTCATGCCAATTGAGA 59.249 45.455 7.12 0.00 0.00 3.27
5360 6651 5.258841 TCATGCCAATTGAGAGATCTGTTT 58.741 37.500 7.12 0.00 0.00 2.83
5361 6652 5.713389 TCATGCCAATTGAGAGATCTGTTTT 59.287 36.000 7.12 0.00 0.00 2.43
5362 6653 6.209986 TCATGCCAATTGAGAGATCTGTTTTT 59.790 34.615 7.12 0.00 0.00 1.94
5521 6817 2.573009 TCATCAATCTCAAGACCAGCCA 59.427 45.455 0.00 0.00 0.00 4.75
5534 6830 0.886563 CCAGCCAGCTCAAGGAAAAG 59.113 55.000 0.00 0.00 0.00 2.27
5549 6845 8.547481 TCAAGGAAAAGGGATAAAAGAACTTT 57.453 30.769 0.00 0.00 33.19 2.66
5553 6849 8.642432 AGGAAAAGGGATAAAAGAACTTTCTTG 58.358 33.333 4.99 0.00 46.22 3.02
5562 6858 4.706842 AAGAACTTTCTTGGAGGTGCTA 57.293 40.909 3.36 0.00 45.27 3.49
5570 6866 1.410882 CTTGGAGGTGCTAGTAGAGGC 59.589 57.143 0.00 0.00 0.00 4.70
5596 6892 3.903876 GCATGTGTGCGTTCATAGG 57.096 52.632 0.00 0.00 42.28 2.57
5602 6898 2.268298 GTGTGCGTTCATAGGGTACTG 58.732 52.381 0.00 0.00 0.00 2.74
5603 6899 1.897133 TGTGCGTTCATAGGGTACTGT 59.103 47.619 0.00 0.00 0.00 3.55
5604 6900 3.090790 TGTGCGTTCATAGGGTACTGTA 58.909 45.455 0.00 0.00 0.00 2.74
5605 6901 3.510753 TGTGCGTTCATAGGGTACTGTAA 59.489 43.478 0.00 0.00 0.00 2.41
5606 6902 4.160814 TGTGCGTTCATAGGGTACTGTAAT 59.839 41.667 0.00 0.00 0.00 1.89
5607 6903 4.506654 GTGCGTTCATAGGGTACTGTAATG 59.493 45.833 0.00 0.00 0.00 1.90
5608 6904 4.160814 TGCGTTCATAGGGTACTGTAATGT 59.839 41.667 0.00 0.00 0.00 2.71
5617 6913 5.686753 AGGGTACTGTAATGTGTTTGTCAA 58.313 37.500 0.00 0.00 0.00 3.18
5645 6941 9.758651 AAACAAAATACTCCAATGTAGTTTTCC 57.241 29.630 0.00 0.00 38.22 3.13
5646 6942 7.892609 ACAAAATACTCCAATGTAGTTTTCCC 58.107 34.615 0.00 0.00 38.22 3.97
5709 7005 5.699097 TTAACTTTGCTACACCATCAACC 57.301 39.130 0.00 0.00 0.00 3.77
5714 7010 0.035056 GCTACACCATCAACCTGGCT 60.035 55.000 0.00 0.00 40.15 4.75
5715 7011 1.209504 GCTACACCATCAACCTGGCTA 59.790 52.381 0.00 0.00 40.15 3.93
5717 7013 3.685550 GCTACACCATCAACCTGGCTATT 60.686 47.826 0.00 0.00 40.15 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.394674 TGCGACAAGGAATAACAGTCA 57.605 42.857 0.00 0.00 0.00 3.41
1 2 3.424962 GCTTGCGACAAGGAATAACAGTC 60.425 47.826 17.36 0.00 0.00 3.51
2 3 2.484264 GCTTGCGACAAGGAATAACAGT 59.516 45.455 17.36 0.00 0.00 3.55
3 4 2.744202 AGCTTGCGACAAGGAATAACAG 59.256 45.455 17.36 0.00 0.00 3.16
4 5 2.742053 GAGCTTGCGACAAGGAATAACA 59.258 45.455 17.36 0.00 0.00 2.41
5 6 3.003480 AGAGCTTGCGACAAGGAATAAC 58.997 45.455 17.36 4.10 0.00 1.89
6 7 3.055819 AGAGAGCTTGCGACAAGGAATAA 60.056 43.478 17.36 0.00 0.00 1.40
7 8 2.497675 AGAGAGCTTGCGACAAGGAATA 59.502 45.455 17.36 0.00 0.00 1.75
8 9 1.277557 AGAGAGCTTGCGACAAGGAAT 59.722 47.619 17.36 0.00 0.00 3.01
9 10 0.681733 AGAGAGCTTGCGACAAGGAA 59.318 50.000 17.36 0.00 0.00 3.36
10 11 0.037882 CAGAGAGCTTGCGACAAGGA 60.038 55.000 17.36 0.00 0.00 3.36
11 12 1.633852 GCAGAGAGCTTGCGACAAGG 61.634 60.000 17.36 4.98 41.15 3.61
12 13 1.633852 GGCAGAGAGCTTGCGACAAG 61.634 60.000 13.18 13.18 44.79 3.16
13 14 1.669115 GGCAGAGAGCTTGCGACAA 60.669 57.895 2.90 0.00 44.79 3.18
14 15 2.047844 GGCAGAGAGCTTGCGACA 60.048 61.111 2.90 0.00 44.79 4.35
15 16 1.449246 ATGGCAGAGAGCTTGCGAC 60.449 57.895 2.90 0.00 44.79 5.19
16 17 1.449070 CATGGCAGAGAGCTTGCGA 60.449 57.895 2.90 0.00 44.79 5.10
17 18 1.703438 GACATGGCAGAGAGCTTGCG 61.703 60.000 0.00 0.00 44.79 4.85
18 19 0.675837 TGACATGGCAGAGAGCTTGC 60.676 55.000 0.00 0.00 44.79 4.01
19 20 1.085091 GTGACATGGCAGAGAGCTTG 58.915 55.000 0.00 0.00 44.79 4.01
20 21 0.035630 GGTGACATGGCAGAGAGCTT 60.036 55.000 0.00 0.00 44.79 3.74
21 22 0.908656 AGGTGACATGGCAGAGAGCT 60.909 55.000 0.00 0.00 44.79 4.09
22 23 0.743701 CAGGTGACATGGCAGAGAGC 60.744 60.000 0.00 0.00 44.65 4.09
23 24 0.612229 ACAGGTGACATGGCAGAGAG 59.388 55.000 0.00 0.00 0.00 3.20
24 25 0.610174 GACAGGTGACATGGCAGAGA 59.390 55.000 0.00 0.00 0.00 3.10
25 26 0.392193 GGACAGGTGACATGGCAGAG 60.392 60.000 0.00 0.00 0.00 3.35
26 27 0.837691 AGGACAGGTGACATGGCAGA 60.838 55.000 0.00 0.00 0.00 4.26
27 28 0.392193 GAGGACAGGTGACATGGCAG 60.392 60.000 0.00 0.00 0.00 4.85
28 29 1.679311 GAGGACAGGTGACATGGCA 59.321 57.895 5.13 0.00 0.00 4.92
29 30 1.078143 GGAGGACAGGTGACATGGC 60.078 63.158 1.27 0.00 0.00 4.40
30 31 0.539051 GAGGAGGACAGGTGACATGG 59.461 60.000 1.27 0.00 0.00 3.66
31 32 0.174389 CGAGGAGGACAGGTGACATG 59.826 60.000 0.00 0.00 0.00 3.21
32 33 1.608717 GCGAGGAGGACAGGTGACAT 61.609 60.000 0.00 0.00 0.00 3.06
33 34 2.276116 GCGAGGAGGACAGGTGACA 61.276 63.158 0.00 0.00 0.00 3.58
34 35 2.574399 GCGAGGAGGACAGGTGAC 59.426 66.667 0.00 0.00 0.00 3.67
35 36 2.680352 GGCGAGGAGGACAGGTGA 60.680 66.667 0.00 0.00 0.00 4.02
36 37 3.775654 GGGCGAGGAGGACAGGTG 61.776 72.222 0.00 0.00 0.00 4.00
51 52 3.366739 GAACTAGGTGTCGCCGGGG 62.367 68.421 13.31 13.31 43.70 5.73
52 53 1.885163 AAGAACTAGGTGTCGCCGGG 61.885 60.000 2.18 0.00 43.70 5.73
53 54 0.458025 GAAGAACTAGGTGTCGCCGG 60.458 60.000 0.00 0.00 43.70 6.13
54 55 0.797249 CGAAGAACTAGGTGTCGCCG 60.797 60.000 0.00 0.00 43.70 6.46
55 56 0.524862 TCGAAGAACTAGGTGTCGCC 59.475 55.000 5.73 0.00 37.58 5.54
56 57 2.186076 CATCGAAGAACTAGGTGTCGC 58.814 52.381 5.73 0.00 43.58 5.19
57 58 2.163815 ACCATCGAAGAACTAGGTGTCG 59.836 50.000 4.42 4.42 43.58 4.35
58 59 3.512680 CACCATCGAAGAACTAGGTGTC 58.487 50.000 0.00 0.00 43.58 3.67
59 60 3.594603 CACCATCGAAGAACTAGGTGT 57.405 47.619 0.00 0.00 43.58 4.16
60 61 3.512680 GACACCATCGAAGAACTAGGTG 58.487 50.000 7.78 7.78 46.78 4.00
61 62 2.496470 GGACACCATCGAAGAACTAGGT 59.504 50.000 0.00 0.00 43.58 3.08
62 63 2.761208 AGGACACCATCGAAGAACTAGG 59.239 50.000 0.00 0.00 43.58 3.02
63 64 4.158764 AGAAGGACACCATCGAAGAACTAG 59.841 45.833 0.00 0.00 43.58 2.57
64 65 4.087182 AGAAGGACACCATCGAAGAACTA 58.913 43.478 0.00 0.00 43.58 2.24
65 66 2.900546 AGAAGGACACCATCGAAGAACT 59.099 45.455 0.00 0.00 43.58 3.01
66 67 3.254892 GAGAAGGACACCATCGAAGAAC 58.745 50.000 0.00 0.00 43.58 3.01
67 68 2.233922 GGAGAAGGACACCATCGAAGAA 59.766 50.000 0.00 0.00 43.58 2.52
68 69 1.825474 GGAGAAGGACACCATCGAAGA 59.175 52.381 0.00 0.00 45.75 2.87
69 70 1.550524 TGGAGAAGGACACCATCGAAG 59.449 52.381 0.00 0.00 34.50 3.79
70 71 1.639722 TGGAGAAGGACACCATCGAA 58.360 50.000 0.00 0.00 34.50 3.71
71 72 1.482182 CATGGAGAAGGACACCATCGA 59.518 52.381 0.00 0.00 45.56 3.59
72 73 1.208052 ACATGGAGAAGGACACCATCG 59.792 52.381 0.00 0.00 45.56 3.84
73 74 3.012518 CAACATGGAGAAGGACACCATC 58.987 50.000 0.00 0.00 45.56 3.51
75 76 1.545428 GCAACATGGAGAAGGACACCA 60.545 52.381 0.00 0.00 42.85 4.17
76 77 1.168714 GCAACATGGAGAAGGACACC 58.831 55.000 0.00 0.00 0.00 4.16
77 78 2.079925 GAGCAACATGGAGAAGGACAC 58.920 52.381 0.00 0.00 0.00 3.67
78 79 1.699083 TGAGCAACATGGAGAAGGACA 59.301 47.619 0.00 0.00 0.00 4.02
79 80 2.479566 TGAGCAACATGGAGAAGGAC 57.520 50.000 0.00 0.00 0.00 3.85
80 81 2.573009 TGATGAGCAACATGGAGAAGGA 59.427 45.455 0.00 0.00 39.56 3.36
81 82 2.681848 GTGATGAGCAACATGGAGAAGG 59.318 50.000 0.00 0.00 39.56 3.46
82 83 2.681848 GGTGATGAGCAACATGGAGAAG 59.318 50.000 0.00 0.00 39.56 2.85
83 84 2.306805 AGGTGATGAGCAACATGGAGAA 59.693 45.455 0.00 0.00 39.56 2.87
84 85 1.911357 AGGTGATGAGCAACATGGAGA 59.089 47.619 0.00 0.00 39.56 3.71
85 86 2.414994 AGGTGATGAGCAACATGGAG 57.585 50.000 0.00 0.00 39.56 3.86
86 87 2.040145 TCAAGGTGATGAGCAACATGGA 59.960 45.455 0.00 0.00 39.56 3.41
87 88 2.163010 GTCAAGGTGATGAGCAACATGG 59.837 50.000 0.00 0.00 39.56 3.66
88 89 3.079578 AGTCAAGGTGATGAGCAACATG 58.920 45.455 0.00 0.00 39.56 3.21
89 90 3.244665 TGAGTCAAGGTGATGAGCAACAT 60.245 43.478 0.00 0.00 42.47 2.71
90 91 2.104622 TGAGTCAAGGTGATGAGCAACA 59.895 45.455 0.00 0.00 36.36 3.33
91 92 2.481952 GTGAGTCAAGGTGATGAGCAAC 59.518 50.000 0.00 0.00 0.00 4.17
92 93 2.771089 GTGAGTCAAGGTGATGAGCAA 58.229 47.619 0.00 0.00 0.00 3.91
93 94 1.337167 CGTGAGTCAAGGTGATGAGCA 60.337 52.381 0.00 0.00 0.00 4.26
94 95 1.354040 CGTGAGTCAAGGTGATGAGC 58.646 55.000 0.00 0.00 0.00 4.26
95 96 1.354040 GCGTGAGTCAAGGTGATGAG 58.646 55.000 8.19 0.00 0.00 2.90
96 97 0.037326 GGCGTGAGTCAAGGTGATGA 60.037 55.000 8.19 0.00 34.40 2.92
97 98 0.320683 TGGCGTGAGTCAAGGTGATG 60.321 55.000 8.19 0.00 46.60 3.07
98 99 2.057830 TGGCGTGAGTCAAGGTGAT 58.942 52.632 8.19 0.00 46.60 3.06
99 100 3.544772 TGGCGTGAGTCAAGGTGA 58.455 55.556 8.19 0.00 46.60 4.02
106 107 1.795286 CTTCTTGTCTTGGCGTGAGTC 59.205 52.381 0.00 0.00 0.00 3.36
107 108 1.412710 TCTTCTTGTCTTGGCGTGAGT 59.587 47.619 0.00 0.00 0.00 3.41
108 109 1.795286 GTCTTCTTGTCTTGGCGTGAG 59.205 52.381 0.00 0.00 0.00 3.51
109 110 1.138069 TGTCTTCTTGTCTTGGCGTGA 59.862 47.619 0.00 0.00 0.00 4.35
110 111 1.581934 TGTCTTCTTGTCTTGGCGTG 58.418 50.000 0.00 0.00 0.00 5.34
111 112 1.940613 GTTGTCTTCTTGTCTTGGCGT 59.059 47.619 0.00 0.00 0.00 5.68
112 113 1.939934 TGTTGTCTTCTTGTCTTGGCG 59.060 47.619 0.00 0.00 0.00 5.69
113 114 3.316308 ACATGTTGTCTTCTTGTCTTGGC 59.684 43.478 0.00 0.00 0.00 4.52
114 115 4.576053 TCACATGTTGTCTTCTTGTCTTGG 59.424 41.667 0.00 0.00 0.00 3.61
115 116 5.295292 AGTCACATGTTGTCTTCTTGTCTTG 59.705 40.000 0.00 0.00 0.00 3.02
116 117 5.431765 AGTCACATGTTGTCTTCTTGTCTT 58.568 37.500 0.00 0.00 0.00 3.01
117 118 5.028549 AGTCACATGTTGTCTTCTTGTCT 57.971 39.130 0.00 0.00 0.00 3.41
118 119 5.505286 CAAGTCACATGTTGTCTTCTTGTC 58.495 41.667 0.00 0.00 31.98 3.18
119 120 4.201950 GCAAGTCACATGTTGTCTTCTTGT 60.202 41.667 0.00 0.00 34.71 3.16
120 121 4.036027 AGCAAGTCACATGTTGTCTTCTTG 59.964 41.667 0.00 6.38 31.98 3.02
121 122 4.202441 AGCAAGTCACATGTTGTCTTCTT 58.798 39.130 0.00 0.00 31.98 2.52
122 123 3.813443 AGCAAGTCACATGTTGTCTTCT 58.187 40.909 0.00 0.00 31.98 2.85
123 124 5.625251 CATAGCAAGTCACATGTTGTCTTC 58.375 41.667 0.00 0.00 31.98 2.87
124 125 4.083110 GCATAGCAAGTCACATGTTGTCTT 60.083 41.667 0.00 0.00 34.32 3.01
125 126 3.438087 GCATAGCAAGTCACATGTTGTCT 59.562 43.478 0.00 0.00 0.00 3.41
126 127 3.438087 AGCATAGCAAGTCACATGTTGTC 59.562 43.478 0.00 0.00 0.00 3.18
127 128 3.415212 AGCATAGCAAGTCACATGTTGT 58.585 40.909 0.00 0.00 0.00 3.32
128 129 4.163552 CAAGCATAGCAAGTCACATGTTG 58.836 43.478 0.00 0.00 0.00 3.33
129 130 3.822735 ACAAGCATAGCAAGTCACATGTT 59.177 39.130 0.00 0.00 0.00 2.71
130 131 3.415212 ACAAGCATAGCAAGTCACATGT 58.585 40.909 0.00 0.00 0.00 3.21
131 132 4.163552 CAACAAGCATAGCAAGTCACATG 58.836 43.478 0.00 0.00 0.00 3.21
132 133 3.192001 CCAACAAGCATAGCAAGTCACAT 59.808 43.478 0.00 0.00 0.00 3.21
133 134 2.553602 CCAACAAGCATAGCAAGTCACA 59.446 45.455 0.00 0.00 0.00 3.58
134 135 2.669391 GCCAACAAGCATAGCAAGTCAC 60.669 50.000 0.00 0.00 0.00 3.67
135 136 1.541147 GCCAACAAGCATAGCAAGTCA 59.459 47.619 0.00 0.00 0.00 3.41
136 137 1.541147 TGCCAACAAGCATAGCAAGTC 59.459 47.619 0.00 0.00 38.00 3.01
137 138 1.270550 GTGCCAACAAGCATAGCAAGT 59.729 47.619 0.00 0.00 46.24 3.16
138 139 1.270274 TGTGCCAACAAGCATAGCAAG 59.730 47.619 0.00 0.00 46.24 4.01
139 140 1.270274 CTGTGCCAACAAGCATAGCAA 59.730 47.619 0.00 0.00 46.24 3.91
140 141 0.883153 CTGTGCCAACAAGCATAGCA 59.117 50.000 0.00 0.00 46.24 3.49
141 142 3.708195 CTGTGCCAACAAGCATAGC 57.292 52.632 0.00 0.00 46.24 2.97
143 144 2.153645 CTGACTGTGCCAACAAGCATA 58.846 47.619 0.00 0.00 46.24 3.14
144 145 0.956633 CTGACTGTGCCAACAAGCAT 59.043 50.000 0.00 0.00 46.24 3.79
145 146 0.394216 ACTGACTGTGCCAACAAGCA 60.394 50.000 0.00 0.00 41.46 3.91
146 147 0.029834 CACTGACTGTGCCAACAAGC 59.970 55.000 0.00 0.00 40.06 4.01
147 148 1.600957 CTCACTGACTGTGCCAACAAG 59.399 52.381 7.56 0.00 45.81 3.16
148 149 1.065491 ACTCACTGACTGTGCCAACAA 60.065 47.619 7.56 0.00 45.81 2.83
149 150 0.541392 ACTCACTGACTGTGCCAACA 59.459 50.000 7.56 0.00 45.81 3.33
150 151 1.331756 CAACTCACTGACTGTGCCAAC 59.668 52.381 7.56 0.00 45.81 3.77
151 152 1.667236 CAACTCACTGACTGTGCCAA 58.333 50.000 7.56 0.00 45.81 4.52
152 153 0.815213 GCAACTCACTGACTGTGCCA 60.815 55.000 7.56 0.00 45.81 4.92
153 154 0.533755 AGCAACTCACTGACTGTGCC 60.534 55.000 7.56 0.00 45.81 5.01
154 155 1.303309 AAGCAACTCACTGACTGTGC 58.697 50.000 7.56 0.00 45.81 4.57
155 156 5.623951 GCCAAAGCAACTCACTGACTGTG 62.624 52.174 6.15 6.15 42.75 3.66
156 157 2.292267 CCAAAGCAACTCACTGACTGT 58.708 47.619 0.00 0.00 0.00 3.55
157 158 1.002033 GCCAAAGCAACTCACTGACTG 60.002 52.381 0.00 0.00 39.53 3.51
158 159 1.312815 GCCAAAGCAACTCACTGACT 58.687 50.000 0.00 0.00 39.53 3.41
159 160 3.853623 GCCAAAGCAACTCACTGAC 57.146 52.632 0.00 0.00 39.53 3.51
188 189 9.613957 CGGATACAACAATAAACATGTTTTACA 57.386 29.630 27.66 11.69 38.90 2.41
189 190 9.068008 CCGGATACAACAATAAACATGTTTTAC 57.932 33.333 27.66 7.49 38.90 2.01
190 191 8.794553 ACCGGATACAACAATAAACATGTTTTA 58.205 29.630 27.66 13.14 38.90 1.52
191 192 7.662897 ACCGGATACAACAATAAACATGTTTT 58.337 30.769 27.66 13.43 38.90 2.43
192 193 7.222000 ACCGGATACAACAATAAACATGTTT 57.778 32.000 25.99 25.99 38.90 2.83
193 194 6.827586 ACCGGATACAACAATAAACATGTT 57.172 33.333 9.46 4.92 41.50 2.71
194 195 6.207810 ACAACCGGATACAACAATAAACATGT 59.792 34.615 9.46 0.00 0.00 3.21
195 196 6.616947 ACAACCGGATACAACAATAAACATG 58.383 36.000 9.46 0.00 0.00 3.21
196 197 6.431543 TGACAACCGGATACAACAATAAACAT 59.568 34.615 9.46 0.00 0.00 2.71
197 198 5.763698 TGACAACCGGATACAACAATAAACA 59.236 36.000 9.46 0.00 0.00 2.83
198 199 6.243811 TGACAACCGGATACAACAATAAAC 57.756 37.500 9.46 0.00 0.00 2.01
199 200 7.455641 AATGACAACCGGATACAACAATAAA 57.544 32.000 9.46 0.00 0.00 1.40
200 201 7.175119 TCAAATGACAACCGGATACAACAATAA 59.825 33.333 9.46 0.00 0.00 1.40
201 202 6.655425 TCAAATGACAACCGGATACAACAATA 59.345 34.615 9.46 0.00 0.00 1.90
202 203 5.475220 TCAAATGACAACCGGATACAACAAT 59.525 36.000 9.46 0.00 0.00 2.71
203 204 4.822350 TCAAATGACAACCGGATACAACAA 59.178 37.500 9.46 0.00 0.00 2.83
204 205 4.390264 TCAAATGACAACCGGATACAACA 58.610 39.130 9.46 0.43 0.00 3.33
205 206 4.454504 ACTCAAATGACAACCGGATACAAC 59.545 41.667 9.46 0.00 0.00 3.32
206 207 4.647611 ACTCAAATGACAACCGGATACAA 58.352 39.130 9.46 0.00 0.00 2.41
207 208 4.280436 ACTCAAATGACAACCGGATACA 57.720 40.909 9.46 0.00 0.00 2.29
208 209 5.416947 ACTACTCAAATGACAACCGGATAC 58.583 41.667 9.46 0.00 0.00 2.24
209 210 5.670792 ACTACTCAAATGACAACCGGATA 57.329 39.130 9.46 0.00 0.00 2.59
210 211 4.553330 ACTACTCAAATGACAACCGGAT 57.447 40.909 9.46 0.00 0.00 4.18
211 212 5.011329 AGTTACTACTCAAATGACAACCGGA 59.989 40.000 9.46 0.00 0.00 5.14
212 213 5.235516 AGTTACTACTCAAATGACAACCGG 58.764 41.667 0.00 0.00 0.00 5.28
213 214 7.878477 TTAGTTACTACTCAAATGACAACCG 57.122 36.000 0.00 0.00 35.78 4.44
232 233 9.442047 CAACAAGGTCAAGATCTTCTATTAGTT 57.558 33.333 4.57 4.69 27.13 2.24
233 234 8.816894 TCAACAAGGTCAAGATCTTCTATTAGT 58.183 33.333 4.57 0.00 27.13 2.24
234 235 9.092876 GTCAACAAGGTCAAGATCTTCTATTAG 57.907 37.037 4.57 0.00 27.13 1.73
235 236 7.759886 CGTCAACAAGGTCAAGATCTTCTATTA 59.240 37.037 4.57 0.00 27.13 0.98
236 237 6.591834 CGTCAACAAGGTCAAGATCTTCTATT 59.408 38.462 4.57 0.00 27.13 1.73
237 238 6.102663 CGTCAACAAGGTCAAGATCTTCTAT 58.897 40.000 4.57 0.00 27.13 1.98
238 239 5.470368 CGTCAACAAGGTCAAGATCTTCTA 58.530 41.667 4.57 0.00 27.13 2.10
239 240 4.310769 CGTCAACAAGGTCAAGATCTTCT 58.689 43.478 4.57 0.00 27.13 2.85
240 241 3.433615 CCGTCAACAAGGTCAAGATCTTC 59.566 47.826 4.57 0.00 27.13 2.87
241 242 3.403038 CCGTCAACAAGGTCAAGATCTT 58.597 45.455 0.88 0.88 30.48 2.40
242 243 2.872038 GCCGTCAACAAGGTCAAGATCT 60.872 50.000 0.00 0.00 0.00 2.75
243 244 1.464997 GCCGTCAACAAGGTCAAGATC 59.535 52.381 0.00 0.00 0.00 2.75
244 245 1.202758 TGCCGTCAACAAGGTCAAGAT 60.203 47.619 0.00 0.00 0.00 2.40
245 246 0.179234 TGCCGTCAACAAGGTCAAGA 59.821 50.000 0.00 0.00 0.00 3.02
246 247 1.238439 ATGCCGTCAACAAGGTCAAG 58.762 50.000 0.00 0.00 0.00 3.02
247 248 1.686355 AATGCCGTCAACAAGGTCAA 58.314 45.000 0.00 0.00 0.00 3.18
248 249 1.336440 CAAATGCCGTCAACAAGGTCA 59.664 47.619 0.00 0.00 0.00 4.02
249 250 1.930371 GCAAATGCCGTCAACAAGGTC 60.930 52.381 0.00 0.00 34.31 3.85
250 251 0.031994 GCAAATGCCGTCAACAAGGT 59.968 50.000 0.00 0.00 34.31 3.50
251 252 0.314935 AGCAAATGCCGTCAACAAGG 59.685 50.000 0.94 0.00 43.38 3.61
252 253 1.411394 CAGCAAATGCCGTCAACAAG 58.589 50.000 0.94 0.00 43.38 3.16
253 254 3.566273 CAGCAAATGCCGTCAACAA 57.434 47.368 0.94 0.00 43.38 2.83
264 265 2.353406 GCTCTCATTTGGTGCAGCAAAT 60.353 45.455 38.19 38.19 34.99 2.32
265 266 1.000060 GCTCTCATTTGGTGCAGCAAA 60.000 47.619 37.48 37.48 34.99 3.68
266 267 0.599558 GCTCTCATTTGGTGCAGCAA 59.400 50.000 26.54 26.54 34.99 3.91
267 268 0.537828 TGCTCTCATTTGGTGCAGCA 60.538 50.000 15.99 15.99 39.63 4.41
268 269 0.170561 CTGCTCTCATTTGGTGCAGC 59.829 55.000 9.47 9.47 41.85 5.25
269 270 1.738350 CTCTGCTCTCATTTGGTGCAG 59.262 52.381 6.91 6.91 46.27 4.41
270 271 1.817357 CTCTGCTCTCATTTGGTGCA 58.183 50.000 0.00 0.00 0.00 4.57
271 272 0.450983 GCTCTGCTCTCATTTGGTGC 59.549 55.000 0.00 0.00 0.00 5.01
272 273 1.738350 CAGCTCTGCTCTCATTTGGTG 59.262 52.381 0.00 0.00 36.40 4.17
287 288 3.935828 GGAACTGACAAGGATTACAGCTC 59.064 47.826 0.00 0.00 35.90 4.09
288 289 3.327757 TGGAACTGACAAGGATTACAGCT 59.672 43.478 0.00 0.00 35.90 4.24
289 290 3.437049 GTGGAACTGACAAGGATTACAGC 59.563 47.826 0.00 0.00 35.90 4.40
290 291 4.452455 GTGTGGAACTGACAAGGATTACAG 59.548 45.833 0.00 0.00 38.04 2.74
291 292 4.141597 TGTGTGGAACTGACAAGGATTACA 60.142 41.667 0.00 0.00 38.04 2.41
293 294 4.698201 TGTGTGGAACTGACAAGGATTA 57.302 40.909 0.00 0.00 38.04 1.75
294 295 3.576078 TGTGTGGAACTGACAAGGATT 57.424 42.857 0.00 0.00 38.04 3.01
306 307 1.728323 TGACCTCCTCATGTGTGGAA 58.272 50.000 11.33 0.00 37.27 3.53
307 308 1.956869 ATGACCTCCTCATGTGTGGA 58.043 50.000 11.33 3.99 38.28 4.02
310 311 2.840038 TGCTTATGACCTCCTCATGTGT 59.160 45.455 0.00 0.00 40.12 3.72
311 312 3.201290 GTGCTTATGACCTCCTCATGTG 58.799 50.000 0.00 0.00 40.12 3.21
312 313 2.171448 GGTGCTTATGACCTCCTCATGT 59.829 50.000 0.00 0.00 40.12 3.21
328 329 2.363680 CGACTTATCTGATGAGGGTGCT 59.636 50.000 13.23 0.00 0.00 4.40
340 341 8.362464 TCTAATATAATGGTGGCGACTTATCT 57.638 34.615 0.00 0.00 0.00 1.98
346 347 5.107220 CGGTTTCTAATATAATGGTGGCGAC 60.107 44.000 0.00 0.00 0.00 5.19
347 348 4.992319 CGGTTTCTAATATAATGGTGGCGA 59.008 41.667 0.00 0.00 0.00 5.54
348 349 4.753107 ACGGTTTCTAATATAATGGTGGCG 59.247 41.667 0.00 0.00 0.00 5.69
350 351 6.218019 TCGACGGTTTCTAATATAATGGTGG 58.782 40.000 0.00 0.00 0.00 4.61
381 383 1.940613 GGATTTTCGGTCCTTCGATGG 59.059 52.381 11.07 11.07 39.03 3.51
387 389 3.449737 TCGATGTAGGATTTTCGGTCCTT 59.550 43.478 0.00 0.00 43.52 3.36
423 425 4.521062 GCCTCGGATGAGCTGCGT 62.521 66.667 0.00 0.00 41.13 5.24
424 426 4.519437 TGCCTCGGATGAGCTGCG 62.519 66.667 0.00 0.00 41.13 5.18
426 428 0.674581 TTGTTGCCTCGGATGAGCTG 60.675 55.000 0.00 0.00 41.13 4.24
428 430 0.955428 TGTTGTTGCCTCGGATGAGC 60.955 55.000 0.00 0.00 41.13 4.26
431 433 0.950836 TGTTGTTGTTGCCTCGGATG 59.049 50.000 0.00 0.00 0.00 3.51
432 434 1.238439 CTGTTGTTGTTGCCTCGGAT 58.762 50.000 0.00 0.00 0.00 4.18
433 435 0.107410 ACTGTTGTTGTTGCCTCGGA 60.107 50.000 0.00 0.00 0.00 4.55
434 436 1.588674 TACTGTTGTTGTTGCCTCGG 58.411 50.000 0.00 0.00 0.00 4.63
435 437 2.869801 TCTTACTGTTGTTGTTGCCTCG 59.130 45.455 0.00 0.00 0.00 4.63
436 438 4.515191 TCATCTTACTGTTGTTGTTGCCTC 59.485 41.667 0.00 0.00 0.00 4.70
437 439 4.460263 TCATCTTACTGTTGTTGTTGCCT 58.540 39.130 0.00 0.00 0.00 4.75
438 440 4.829064 TCATCTTACTGTTGTTGTTGCC 57.171 40.909 0.00 0.00 0.00 4.52
439 441 5.858581 GGAATCATCTTACTGTTGTTGTTGC 59.141 40.000 0.00 0.00 0.00 4.17
456 458 1.942657 CATTCGACCTTGCGGAATCAT 59.057 47.619 0.00 0.00 0.00 2.45
459 461 2.684001 TACATTCGACCTTGCGGAAT 57.316 45.000 0.00 0.00 0.00 3.01
466 468 3.528532 GGGACGATTTACATTCGACCTT 58.471 45.455 12.69 0.00 46.11 3.50
483 485 1.534163 GCTTTGGTAGTTTCACGGGAC 59.466 52.381 0.00 0.00 0.00 4.46
487 489 4.085107 GCATTTTGCTTTGGTAGTTTCACG 60.085 41.667 0.00 0.00 40.96 4.35
488 490 5.328886 GCATTTTGCTTTGGTAGTTTCAC 57.671 39.130 0.00 0.00 40.96 3.18
502 504 1.085501 CCGATGGCCAAGCATTTTGC 61.086 55.000 10.96 0.00 45.46 3.68
510 512 2.168521 TCTAGTTTCTCCGATGGCCAAG 59.831 50.000 10.96 7.14 0.00 3.61
511 513 2.184533 TCTAGTTTCTCCGATGGCCAA 58.815 47.619 10.96 0.00 0.00 4.52
519 521 7.414540 CCATCAAAAGGAATTCTAGTTTCTCCG 60.415 40.741 5.23 0.00 0.00 4.63
523 525 6.333416 GGCCATCAAAAGGAATTCTAGTTTC 58.667 40.000 5.23 0.00 0.00 2.78
524 526 5.187772 GGGCCATCAAAAGGAATTCTAGTTT 59.812 40.000 4.39 0.73 0.00 2.66
525 527 4.711846 GGGCCATCAAAAGGAATTCTAGTT 59.288 41.667 4.39 0.00 0.00 2.24
526 528 4.281657 GGGCCATCAAAAGGAATTCTAGT 58.718 43.478 4.39 0.00 0.00 2.57
527 529 3.638627 GGGGCCATCAAAAGGAATTCTAG 59.361 47.826 4.39 0.00 0.00 2.43
528 530 3.629796 GGGGGCCATCAAAAGGAATTCTA 60.630 47.826 4.39 0.00 0.00 2.10
545 547 2.779755 CCCATTTTTAGTTTGGGGGC 57.220 50.000 0.00 0.00 45.37 5.80
567 590 5.308825 TCTTTCACCATCTCTTTCACCTTC 58.691 41.667 0.00 0.00 0.00 3.46
568 591 5.072329 TCTCTTTCACCATCTCTTTCACCTT 59.928 40.000 0.00 0.00 0.00 3.50
569 592 4.594920 TCTCTTTCACCATCTCTTTCACCT 59.405 41.667 0.00 0.00 0.00 4.00
570 593 4.899502 TCTCTTTCACCATCTCTTTCACC 58.100 43.478 0.00 0.00 0.00 4.02
571 594 5.936956 ACATCTCTTTCACCATCTCTTTCAC 59.063 40.000 0.00 0.00 0.00 3.18
572 595 6.119240 ACATCTCTTTCACCATCTCTTTCA 57.881 37.500 0.00 0.00 0.00 2.69
573 596 6.429385 ACAACATCTCTTTCACCATCTCTTTC 59.571 38.462 0.00 0.00 0.00 2.62
574 597 6.206243 CACAACATCTCTTTCACCATCTCTTT 59.794 38.462 0.00 0.00 0.00 2.52
575 598 5.704515 CACAACATCTCTTTCACCATCTCTT 59.295 40.000 0.00 0.00 0.00 2.85
576 599 5.243981 CACAACATCTCTTTCACCATCTCT 58.756 41.667 0.00 0.00 0.00 3.10
577 600 4.142730 GCACAACATCTCTTTCACCATCTC 60.143 45.833 0.00 0.00 0.00 2.75
578 601 3.755378 GCACAACATCTCTTTCACCATCT 59.245 43.478 0.00 0.00 0.00 2.90
581 604 2.880268 CAGCACAACATCTCTTTCACCA 59.120 45.455 0.00 0.00 0.00 4.17
602 625 1.202521 CCAAGCCAACAAACCTCAACC 60.203 52.381 0.00 0.00 0.00 3.77
757 1043 2.805353 CCACGAGACGGACAAGCG 60.805 66.667 0.00 0.00 0.00 4.68
771 1057 1.122019 ACCTGACCTGACCTGACCAC 61.122 60.000 0.00 0.00 0.00 4.16
814 1100 2.515853 AGGAGGGATTGGGGATTTCTTC 59.484 50.000 0.00 0.00 0.00 2.87
924 1221 4.838152 CATGCGGTGGACGGGAGG 62.838 72.222 0.00 0.00 44.51 4.30
1091 1911 2.286121 AAAGGGGGATCTGGCGGA 60.286 61.111 0.00 0.00 0.00 5.54
1241 2072 0.676782 TGATGAGCGTCGTGGAGAGA 60.677 55.000 0.00 0.00 0.00 3.10
1345 2190 4.553323 GCCTTATTAATCCGACGCTAAGA 58.447 43.478 0.00 0.00 0.00 2.10
1411 2256 2.030185 GCATCACCATTCCATGAGCATC 60.030 50.000 0.00 0.00 0.00 3.91
1555 2476 1.260544 AAAGCAAACAGAGGGGCATC 58.739 50.000 0.00 0.00 0.00 3.91
1608 2544 4.355543 ACATGTAATTACAAGCTTGCGG 57.644 40.909 26.27 3.28 39.99 5.69
1610 2546 7.382218 AGACAAAACATGTAATTACAAGCTTGC 59.618 33.333 26.27 16.80 44.12 4.01
1612 2548 7.382218 GCAGACAAAACATGTAATTACAAGCTT 59.618 33.333 21.57 12.30 44.12 3.74
1614 2550 6.089417 GGCAGACAAAACATGTAATTACAAGC 59.911 38.462 21.57 11.87 44.12 4.01
1615 2551 7.144661 TGGCAGACAAAACATGTAATTACAAG 58.855 34.615 21.57 19.17 44.12 3.16
1616 2552 7.043961 TGGCAGACAAAACATGTAATTACAA 57.956 32.000 21.57 6.33 44.12 2.41
1617 2553 6.641169 TGGCAGACAAAACATGTAATTACA 57.359 33.333 20.14 20.14 44.12 2.41
1618 2554 7.938563 TTTGGCAGACAAAACATGTAATTAC 57.061 32.000 8.75 8.75 45.59 1.89
1690 2758 5.934625 AGTGAAACAGAAGCAACTATACTGG 59.065 40.000 0.00 0.00 41.43 4.00
1700 2768 5.296780 CCTACAGAAAAGTGAAACAGAAGCA 59.703 40.000 0.00 0.00 41.43 3.91
1701 2769 5.752712 CCTACAGAAAAGTGAAACAGAAGC 58.247 41.667 0.00 0.00 41.43 3.86
1766 2835 7.752239 CAGGCAGAACACTTGTAATGAAATTAG 59.248 37.037 0.00 0.00 39.94 1.73
1772 2841 4.350368 TCAGGCAGAACACTTGTAATGA 57.650 40.909 0.00 0.00 0.00 2.57
1824 2893 0.655733 AACCACGCAGAAACAAGACG 59.344 50.000 0.00 0.00 0.00 4.18
1931 3000 3.532641 AGACCAAGGAAGCAGGAAAAT 57.467 42.857 0.00 0.00 0.00 1.82
1935 3004 2.621070 AGTAAGACCAAGGAAGCAGGA 58.379 47.619 0.00 0.00 0.00 3.86
1936 3005 3.077359 CAAGTAAGACCAAGGAAGCAGG 58.923 50.000 0.00 0.00 0.00 4.85
1979 3048 6.765989 CAGTTGATCCCTCCGTGAATAAATAA 59.234 38.462 0.00 0.00 0.00 1.40
1980 3049 6.099125 TCAGTTGATCCCTCCGTGAATAAATA 59.901 38.462 0.00 0.00 0.00 1.40
1981 3050 5.104527 TCAGTTGATCCCTCCGTGAATAAAT 60.105 40.000 0.00 0.00 0.00 1.40
2114 3183 3.932089 GCTTCCTGTTGCAAAAACTGAAA 59.068 39.130 0.00 0.00 0.00 2.69
2138 3207 7.222611 GCAAGCATCAAAACAGTTTTTAGAGAA 59.777 33.333 8.65 0.00 32.90 2.87
2186 3255 2.723322 TGATGCCAAGGGAATCTGAG 57.277 50.000 4.90 0.00 38.55 3.35
2232 3301 7.610580 AAAAGGAAGTAATTCAAATCCCACA 57.389 32.000 5.15 0.00 0.00 4.17
2258 3327 2.804697 TTCGACACGGTTGATCTGAA 57.195 45.000 0.00 0.00 0.00 3.02
2268 3337 1.323534 GAATGGACGAATTCGACACGG 59.676 52.381 33.05 4.51 43.02 4.94
2361 3430 0.447801 GCCAGTGGAATGTAGCGTTG 59.552 55.000 15.20 0.00 0.00 4.10
2364 3433 0.659427 CATGCCAGTGGAATGTAGCG 59.341 55.000 20.94 0.00 34.11 4.26
2617 3694 8.428186 AAAATGCTTATGCCATGAATGTAAAG 57.572 30.769 0.00 0.00 38.71 1.85
2853 3930 2.175069 ACTAGATGCCTCGGGAGTCTAA 59.825 50.000 0.00 0.00 0.00 2.10
3045 4124 6.675987 CAGATAATTAGGCTGCCAGAAAATC 58.324 40.000 22.65 18.40 0.00 2.17
3188 4276 4.979197 CGCAGGATATAGAGAAGAACACAC 59.021 45.833 0.00 0.00 0.00 3.82
3446 4538 7.537715 TGGTGTGTAAACATCAATGAATCATC 58.462 34.615 0.00 0.00 0.00 2.92
3520 4619 4.038642 TCAAATTGAAACCCTGCAAGTACC 59.961 41.667 0.00 0.00 0.00 3.34
3586 4685 1.003355 CGGTGGAGCACTGGTCATT 60.003 57.895 10.34 0.00 37.12 2.57
3622 4721 4.335416 CAGCATTAAGGAAAGGAGGAACA 58.665 43.478 0.00 0.00 0.00 3.18
3623 4722 3.129462 GCAGCATTAAGGAAAGGAGGAAC 59.871 47.826 0.00 0.00 0.00 3.62
3625 4724 2.680805 CGCAGCATTAAGGAAAGGAGGA 60.681 50.000 0.00 0.00 0.00 3.71
3654 4761 3.370978 AGCAAACGGTAAGACATGAATCG 59.629 43.478 0.00 0.00 0.00 3.34
3669 4776 4.298332 ACATAAAAGGAAAGCAGCAAACG 58.702 39.130 0.00 0.00 0.00 3.60
3677 4784 3.733988 GCGGCCTAACATAAAAGGAAAGC 60.734 47.826 0.00 0.00 34.58 3.51
3833 4954 9.856488 TTGAAGAATACACAGACTTACATCTAC 57.144 33.333 0.00 0.00 0.00 2.59
3917 5038 9.953825 CTAGTACGAACATTTTGTAATCTCAAC 57.046 33.333 0.00 0.00 31.58 3.18
3940 5069 5.836358 AGCCTGATTTCTAACTCCCTACTAG 59.164 44.000 0.00 0.00 0.00 2.57
3948 5077 6.587273 AGGTAATGAGCCTGATTTCTAACTC 58.413 40.000 0.00 0.00 34.56 3.01
3975 5104 3.088532 ACCAACTCAACAGAACAAAGCA 58.911 40.909 0.00 0.00 0.00 3.91
3996 5145 7.098477 CGGTTCCCGGATATACATACAATTAA 58.902 38.462 0.73 0.00 44.15 1.40
3997 5146 6.632909 CGGTTCCCGGATATACATACAATTA 58.367 40.000 0.73 0.00 44.15 1.40
3998 5147 5.484715 CGGTTCCCGGATATACATACAATT 58.515 41.667 0.73 0.00 44.15 2.32
3999 5148 5.080969 CGGTTCCCGGATATACATACAAT 57.919 43.478 0.73 0.00 44.15 2.71
4000 5149 4.524316 CGGTTCCCGGATATACATACAA 57.476 45.455 0.73 0.00 44.15 2.41
4014 5163 7.090953 TGTGATTATCATTTAAACGGTTCCC 57.909 36.000 0.00 0.00 0.00 3.97
4037 5186 4.188462 TCTGTATTTCCCACACGCTTATG 58.812 43.478 0.00 0.00 0.00 1.90
4046 5195 9.725019 TCATTATCATACATCTGTATTTCCCAC 57.275 33.333 0.06 0.00 39.06 4.61
4085 5234 1.597937 GCAAAGACCAAACTGCGACTG 60.598 52.381 0.00 0.00 0.00 3.51
4112 5283 4.677832 GCACGGTTGTTAAACACATAAAGG 59.322 41.667 0.00 0.00 38.10 3.11
4122 5293 1.015109 TTCAGCGCACGGTTGTTAAA 58.985 45.000 11.47 0.00 0.00 1.52
4257 5428 3.267812 AGGTGGATTGGTCATGTCTGATT 59.732 43.478 0.00 0.00 32.98 2.57
4450 5629 2.907897 GATCCGCTTGACCGTCCCAG 62.908 65.000 0.00 0.00 0.00 4.45
4784 5967 2.271497 GCTGCCTGGCTGAGACAT 59.729 61.111 27.16 0.00 0.00 3.06
4824 6007 8.840321 CCATTCATTCGTTATAAAGAAGACCAT 58.160 33.333 17.00 6.19 30.32 3.55
4850 6033 6.704493 CACCATTCATTCATTCCATTTCCATC 59.296 38.462 0.00 0.00 0.00 3.51
5142 6344 3.181499 GCAGTCAATCATCTCAGCTTTGG 60.181 47.826 0.00 0.00 0.00 3.28
5144 6346 3.952931 AGCAGTCAATCATCTCAGCTTT 58.047 40.909 0.00 0.00 0.00 3.51
5185 6387 3.577649 TCTCAAGCCTCGACAAACTAG 57.422 47.619 0.00 0.00 0.00 2.57
5194 6396 0.098376 GCAGCAATTCTCAAGCCTCG 59.902 55.000 0.00 0.00 0.00 4.63
5225 6430 1.291272 CTTCAGCCCTGCCAAAAGC 59.709 57.895 0.00 0.00 44.14 3.51
5235 6440 0.035056 ATAGCACACCACTTCAGCCC 60.035 55.000 0.00 0.00 0.00 5.19
5268 6558 6.174049 AGTAAGGAGCTGGATTTGTTACTTC 58.826 40.000 0.00 0.00 0.00 3.01
5418 6713 7.252708 TCAATTGTAAATTCAGCAGCATACAG 58.747 34.615 5.13 0.00 0.00 2.74
5521 6817 5.892348 TCTTTTATCCCTTTTCCTTGAGCT 58.108 37.500 0.00 0.00 0.00 4.09
5534 6830 6.010850 ACCTCCAAGAAAGTTCTTTTATCCC 58.989 40.000 3.51 0.00 44.70 3.85
5549 6845 2.950874 GCCTCTACTAGCACCTCCAAGA 60.951 54.545 0.00 0.00 0.00 3.02
5552 6848 0.335019 TGCCTCTACTAGCACCTCCA 59.665 55.000 0.00 0.00 33.08 3.86
5553 6849 1.036707 CTGCCTCTACTAGCACCTCC 58.963 60.000 0.00 0.00 34.68 4.30
5583 6879 1.897133 ACAGTACCCTATGAACGCACA 59.103 47.619 0.00 0.00 0.00 4.57
5629 6925 4.586841 TGGTTTGGGAAAACTACATTGGAG 59.413 41.667 0.00 0.00 33.37 3.86
5633 6929 8.681806 CAAAATTTGGTTTGGGAAAACTACATT 58.318 29.630 0.00 0.00 35.29 2.71
5637 6933 8.103935 AGTTCAAAATTTGGTTTGGGAAAACTA 58.896 29.630 5.83 0.00 38.72 2.24
5639 6935 7.151999 AGTTCAAAATTTGGTTTGGGAAAAC 57.848 32.000 5.83 0.17 38.72 2.43
5643 6939 6.241645 ACAAAGTTCAAAATTTGGTTTGGGA 58.758 32.000 21.46 0.00 45.28 4.37
5644 6940 6.507958 ACAAAGTTCAAAATTTGGTTTGGG 57.492 33.333 21.46 8.09 45.28 4.12
5645 6941 7.588512 TCAACAAAGTTCAAAATTTGGTTTGG 58.411 30.769 21.46 10.15 40.54 3.28
5646 6942 9.455847 TTTCAACAAAGTTCAAAATTTGGTTTG 57.544 25.926 16.96 18.56 40.54 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.