Multiple sequence alignment - TraesCS1A01G442300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G442300 chr1A 100.000 3771 0 0 1 3771 590998413 590994643 0.000000e+00 6964.0
1 TraesCS1A01G442300 chr1A 84.607 968 120 17 971 1926 590969006 590968056 0.000000e+00 935.0
2 TraesCS1A01G442300 chr1A 81.806 764 129 6 2121 2879 590967915 590967157 1.910000e-177 632.0
3 TraesCS1A01G442300 chr1D 92.769 1217 52 21 850 2042 492538107 492536903 0.000000e+00 1727.0
4 TraesCS1A01G442300 chr1D 95.876 873 32 4 2085 2957 492534925 492534057 0.000000e+00 1410.0
5 TraesCS1A01G442300 chr1D 93.513 632 27 5 1 618 59533485 59534116 0.000000e+00 928.0
6 TraesCS1A01G442300 chr1D 94.133 392 22 1 2959 3349 416482192 416482583 2.510000e-166 595.0
7 TraesCS1A01G442300 chr1D 90.038 261 25 1 3483 3743 492533914 492533655 1.680000e-88 337.0
8 TraesCS1A01G442300 chr1D 85.774 239 9 14 622 853 492538425 492538205 2.930000e-56 230.0
9 TraesCS1A01G442300 chr1B 90.026 1163 67 21 850 1984 685233604 685232463 0.000000e+00 1459.0
10 TraesCS1A01G442300 chr1B 93.850 748 43 3 2085 2830 685232317 685231571 0.000000e+00 1123.0
11 TraesCS1A01G442300 chr1B 87.111 225 16 8 616 834 685233898 685233681 3.760000e-60 243.0
12 TraesCS1A01G442300 chr2B 85.421 974 123 8 996 1962 792677472 792678433 0.000000e+00 994.0
13 TraesCS1A01G442300 chr2B 78.395 162 33 2 2298 2458 727221652 727221492 1.850000e-18 104.0
14 TraesCS1A01G442300 chr5D 95.025 603 25 2 1 599 318819183 318818582 0.000000e+00 942.0
15 TraesCS1A01G442300 chr5D 94.362 603 28 3 1 599 539720423 539721023 0.000000e+00 920.0
16 TraesCS1A01G442300 chr5D 93.874 604 30 3 1 599 478458542 478459143 0.000000e+00 904.0
17 TraesCS1A01G442300 chr2D 94.472 597 30 1 1 594 555390937 555391533 0.000000e+00 917.0
18 TraesCS1A01G442300 chr2D 93.894 606 28 5 1 599 314360151 314360754 0.000000e+00 905.0
19 TraesCS1A01G442300 chr4A 94.186 602 29 3 1 598 597455822 597456421 0.000000e+00 913.0
20 TraesCS1A01G442300 chr4A 94.186 602 29 3 1 598 597634698 597635297 0.000000e+00 913.0
21 TraesCS1A01G442300 chr4A 94.602 389 20 1 2962 3349 212693691 212693303 5.390000e-168 601.0
22 TraesCS1A01G442300 chr3D 92.902 634 32 4 1 621 551075070 551075703 0.000000e+00 909.0
23 TraesCS1A01G442300 chr3A 95.373 389 17 1 2962 3349 468013712 468013324 5.350000e-173 617.0
24 TraesCS1A01G442300 chr6D 94.207 397 21 2 2952 3347 34523656 34524051 4.170000e-169 604.0
25 TraesCS1A01G442300 chr6D 90.909 44 3 1 1354 1396 449161600 449161557 1.460000e-04 58.4
26 TraesCS1A01G442300 chr6A 94.859 389 16 4 2962 3348 503431402 503431788 4.170000e-169 604.0
27 TraesCS1A01G442300 chr6A 94.595 37 2 0 2297 2333 64505891 64505855 1.460000e-04 58.4
28 TraesCS1A01G442300 chr5B 94.133 392 22 1 2959 3349 517189964 517190355 2.510000e-166 595.0
29 TraesCS1A01G442300 chr4D 93.719 398 23 2 2954 3350 10921079 10921475 2.510000e-166 595.0
30 TraesCS1A01G442300 chr4D 94.118 391 21 2 2962 3351 33237538 33237149 9.020000e-166 593.0
31 TraesCS1A01G442300 chr4B 94.344 389 21 1 2962 3349 396387222 396386834 2.510000e-166 595.0
32 TraesCS1A01G442300 chr7B 78.130 631 123 14 2142 2766 556457037 556456416 1.640000e-103 387.0
33 TraesCS1A01G442300 chr7D 77.389 628 126 15 2142 2762 522503149 522502531 3.580000e-95 359.0
34 TraesCS1A01G442300 chr6B 90.909 44 3 1 1354 1396 680767683 680767640 1.460000e-04 58.4
35 TraesCS1A01G442300 chr6B 90.909 44 3 1 1354 1396 680894646 680894689 1.460000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G442300 chr1A 590994643 590998413 3770 True 6964.000000 6964 100.00000 1 3771 1 chr1A.!!$R1 3770
1 TraesCS1A01G442300 chr1A 590967157 590969006 1849 True 783.500000 935 83.20650 971 2879 2 chr1A.!!$R2 1908
2 TraesCS1A01G442300 chr1D 59533485 59534116 631 False 928.000000 928 93.51300 1 618 1 chr1D.!!$F1 617
3 TraesCS1A01G442300 chr1D 492533655 492538425 4770 True 926.000000 1727 91.11425 622 3743 4 chr1D.!!$R1 3121
4 TraesCS1A01G442300 chr1B 685231571 685233898 2327 True 941.666667 1459 90.32900 616 2830 3 chr1B.!!$R1 2214
5 TraesCS1A01G442300 chr2B 792677472 792678433 961 False 994.000000 994 85.42100 996 1962 1 chr2B.!!$F1 966
6 TraesCS1A01G442300 chr5D 318818582 318819183 601 True 942.000000 942 95.02500 1 599 1 chr5D.!!$R1 598
7 TraesCS1A01G442300 chr5D 539720423 539721023 600 False 920.000000 920 94.36200 1 599 1 chr5D.!!$F2 598
8 TraesCS1A01G442300 chr5D 478458542 478459143 601 False 904.000000 904 93.87400 1 599 1 chr5D.!!$F1 598
9 TraesCS1A01G442300 chr2D 555390937 555391533 596 False 917.000000 917 94.47200 1 594 1 chr2D.!!$F2 593
10 TraesCS1A01G442300 chr2D 314360151 314360754 603 False 905.000000 905 93.89400 1 599 1 chr2D.!!$F1 598
11 TraesCS1A01G442300 chr4A 597455822 597456421 599 False 913.000000 913 94.18600 1 598 1 chr4A.!!$F1 597
12 TraesCS1A01G442300 chr4A 597634698 597635297 599 False 913.000000 913 94.18600 1 598 1 chr4A.!!$F2 597
13 TraesCS1A01G442300 chr3D 551075070 551075703 633 False 909.000000 909 92.90200 1 621 1 chr3D.!!$F1 620
14 TraesCS1A01G442300 chr7B 556456416 556457037 621 True 387.000000 387 78.13000 2142 2766 1 chr7B.!!$R1 624
15 TraesCS1A01G442300 chr7D 522502531 522503149 618 True 359.000000 359 77.38900 2142 2762 1 chr7D.!!$R1 620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
772 784 0.032217 TCCCATTTTGGCCATCTCCC 60.032 55.0 6.09 0.00 35.79 4.30 F
992 1109 0.317479 ACAAACGAACCGAGCTAGCT 59.683 50.0 19.45 19.45 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2253 4428 0.031721 GTCGGTTTCTGTGACGAGGT 59.968 55.000 0.0 0.0 35.88 3.85 R
2804 4983 1.687123 AGGTACATCGGATCGAAAGGG 59.313 52.381 0.0 0.0 39.99 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 0.963962 GGGCATCGTTCCGTATCCTA 59.036 55.000 0.00 0.00 0.00 2.94
88 89 1.461127 CTTGGAGCACGCAGAAACTAC 59.539 52.381 0.00 0.00 0.00 2.73
180 181 3.882888 ACGATCAAGGCTTTCAGTTTCAA 59.117 39.130 0.00 0.00 0.00 2.69
223 224 2.772077 TGGAGTAGCGGCAACATTTA 57.228 45.000 1.45 0.00 0.00 1.40
228 229 2.817258 AGTAGCGGCAACATTTAAGCAA 59.183 40.909 1.45 0.00 0.00 3.91
271 272 1.234821 GCGTGATTGGGAAACTCACA 58.765 50.000 0.00 0.00 39.36 3.58
318 320 5.425217 TGAGTATATGTGGACTCATGTTGGT 59.575 40.000 2.52 0.00 45.49 3.67
321 323 8.034313 AGTATATGTGGACTCATGTTGGTAAT 57.966 34.615 0.00 0.00 0.00 1.89
409 417 6.206048 GCCTGTAATACTATTTATTTGGGCGT 59.794 38.462 0.00 0.00 0.00 5.68
471 479 0.954938 GCAATGCAAAATTGGGCGGT 60.955 50.000 0.00 0.00 0.00 5.68
538 546 4.574892 TGCCGACTCATATGAAAAACAGA 58.425 39.130 6.90 0.00 0.00 3.41
596 604 3.252484 CGGACGAAATCGCCGGTC 61.252 66.667 22.18 6.68 46.81 4.79
597 605 2.889018 GGACGAAATCGCCGGTCC 60.889 66.667 1.90 0.00 44.43 4.46
598 606 3.252484 GACGAAATCGCCGGTCCG 61.252 66.667 3.60 3.60 44.43 4.79
610 618 4.324991 GGTCCGCCCGTTGGAGTT 62.325 66.667 0.00 0.00 35.82 3.01
611 619 3.047877 GTCCGCCCGTTGGAGTTG 61.048 66.667 0.00 0.00 35.82 3.16
614 622 3.423154 CGCCCGTTGGAGTTGCTC 61.423 66.667 0.00 0.00 0.00 4.26
665 676 6.929606 GTGTTTTACAAGAAGCTAGAAGGAGA 59.070 38.462 0.00 0.00 0.00 3.71
696 707 4.523173 TGACGTGGAAGAAACATAGAGAGT 59.477 41.667 0.00 0.00 0.00 3.24
697 708 5.010719 TGACGTGGAAGAAACATAGAGAGTT 59.989 40.000 0.00 0.00 0.00 3.01
698 709 5.855045 ACGTGGAAGAAACATAGAGAGTTT 58.145 37.500 0.00 0.00 41.53 2.66
699 710 5.696724 ACGTGGAAGAAACATAGAGAGTTTG 59.303 40.000 0.00 0.00 39.15 2.93
700 711 5.926542 CGTGGAAGAAACATAGAGAGTTTGA 59.073 40.000 0.00 0.00 39.15 2.69
723 734 2.332063 AGTTAACATATGCGGCTGCT 57.668 45.000 20.27 6.90 43.34 4.24
735 746 1.080995 CGGCTGCTAAGTGAGTGAGC 61.081 60.000 0.00 0.00 36.72 4.26
747 758 2.280119 GTGAGCGAGTGGTGCACA 60.280 61.111 20.43 1.62 36.74 4.57
772 784 0.032217 TCCCATTTTGGCCATCTCCC 60.032 55.000 6.09 0.00 35.79 4.30
792 804 3.691049 CAAAGTCGTTTGGAAAGCTCA 57.309 42.857 0.00 0.00 39.63 4.26
803 815 3.620488 TGGAAAGCTCAGTTGTTTGTCT 58.380 40.909 0.00 0.00 0.00 3.41
824 836 1.118965 TCTTCCTCGGACTGTGCCAA 61.119 55.000 0.00 0.00 0.00 4.52
825 837 0.671781 CTTCCTCGGACTGTGCCAAG 60.672 60.000 0.00 0.00 0.00 3.61
847 871 1.378646 GGCTTGGGTAGTTGGGAGC 60.379 63.158 0.00 0.00 0.00 4.70
848 872 1.685820 GCTTGGGTAGTTGGGAGCT 59.314 57.895 0.00 0.00 0.00 4.09
872 989 1.447314 GTGGGCGTGTAGGTAGCAC 60.447 63.158 0.00 0.00 34.36 4.40
932 1049 6.352565 GCTCTCCACAGCTCCCATATTTATAT 60.353 42.308 0.00 0.00 36.38 0.86
934 1051 5.500234 TCCACAGCTCCCATATTTATATGC 58.500 41.667 4.53 0.00 38.99 3.14
935 1052 5.014018 TCCACAGCTCCCATATTTATATGCA 59.986 40.000 4.53 0.00 38.99 3.96
936 1053 5.889853 CCACAGCTCCCATATTTATATGCAT 59.110 40.000 3.79 3.79 38.99 3.96
940 1057 4.790766 GCTCCCATATTTATATGCATGCGC 60.791 45.833 14.09 0.00 38.99 6.09
941 1058 4.525996 TCCCATATTTATATGCATGCGCT 58.474 39.130 14.09 5.45 38.99 5.92
942 1059 5.679601 TCCCATATTTATATGCATGCGCTA 58.320 37.500 14.09 7.74 38.99 4.26
943 1060 5.527214 TCCCATATTTATATGCATGCGCTAC 59.473 40.000 14.09 0.00 38.99 3.58
944 1061 5.434706 CCATATTTATATGCATGCGCTACG 58.565 41.667 14.09 0.00 38.99 3.51
945 1062 4.900182 CATATTTATATGCATGCGCTACGC 59.100 41.667 14.09 9.26 42.10 4.42
946 1063 6.325742 CATATTTATATGCATGCGCTACGCG 61.326 44.000 14.09 3.53 43.33 6.01
956 1073 2.421739 GCTACGCGGATGGTGGAT 59.578 61.111 12.47 0.00 0.00 3.41
958 1075 2.041976 CTACGCGGATGGTGGATCT 58.958 57.895 12.47 0.00 0.00 2.75
959 1076 1.244816 CTACGCGGATGGTGGATCTA 58.755 55.000 12.47 0.00 0.00 1.98
960 1077 1.611977 CTACGCGGATGGTGGATCTAA 59.388 52.381 12.47 0.00 0.00 2.10
961 1078 1.048601 ACGCGGATGGTGGATCTAAT 58.951 50.000 12.47 0.00 0.00 1.73
984 1101 3.356145 CAACTACCAAACAAACGAACCG 58.644 45.455 0.00 0.00 0.00 4.44
989 1106 1.868498 CCAAACAAACGAACCGAGCTA 59.132 47.619 0.00 0.00 0.00 3.32
990 1107 2.096417 CCAAACAAACGAACCGAGCTAG 60.096 50.000 0.00 0.00 0.00 3.42
991 1108 1.145803 AACAAACGAACCGAGCTAGC 58.854 50.000 6.62 6.62 0.00 3.42
992 1109 0.317479 ACAAACGAACCGAGCTAGCT 59.683 50.000 19.45 19.45 0.00 3.32
1040 1176 4.824515 CCTCCTCGCCTCCCTCGT 62.825 72.222 0.00 0.00 0.00 4.18
1999 2161 6.073331 GCTTTGCTGACCATATCTACAAGATC 60.073 42.308 0.00 0.00 36.20 2.75
2015 2177 5.690865 ACAAGATCAAAGTTCCAAGGTACA 58.309 37.500 0.00 0.00 0.00 2.90
2016 2178 5.531287 ACAAGATCAAAGTTCCAAGGTACAC 59.469 40.000 0.00 0.00 0.00 2.90
2017 2179 5.568620 AGATCAAAGTTCCAAGGTACACT 57.431 39.130 0.00 0.00 0.00 3.55
2018 2180 6.681729 AGATCAAAGTTCCAAGGTACACTA 57.318 37.500 0.00 0.00 0.00 2.74
2019 2181 6.702329 AGATCAAAGTTCCAAGGTACACTAG 58.298 40.000 0.00 0.00 0.00 2.57
2022 2184 7.549147 TCAAAGTTCCAAGGTACACTAGTAT 57.451 36.000 0.00 0.00 31.84 2.12
2023 2185 8.654485 TCAAAGTTCCAAGGTACACTAGTATA 57.346 34.615 0.00 0.00 31.84 1.47
2025 2187 9.367444 CAAAGTTCCAAGGTACACTAGTATAAG 57.633 37.037 0.00 0.00 31.84 1.73
2026 2188 8.890410 AAGTTCCAAGGTACACTAGTATAAGA 57.110 34.615 0.00 0.00 31.84 2.10
2027 2189 9.490083 AAGTTCCAAGGTACACTAGTATAAGAT 57.510 33.333 0.00 0.00 31.84 2.40
2086 4161 6.129115 CGCAAAGATTTTGGTTATGTCACTTG 60.129 38.462 3.97 0.00 0.00 3.16
2092 4267 9.965824 AGATTTTGGTTATGTCACTTGTTTTAG 57.034 29.630 0.00 0.00 0.00 1.85
2253 4428 1.228003 ACGTTGTCGGAAATGGCCA 60.228 52.632 8.56 8.56 41.85 5.36
2263 4438 0.605319 GAAATGGCCACCTCGTCACA 60.605 55.000 8.16 0.00 0.00 3.58
2267 4442 1.070786 GGCCACCTCGTCACAGAAA 59.929 57.895 0.00 0.00 0.00 2.52
2491 4666 1.000896 CAGGCCCACCCGATTTCTT 60.001 57.895 0.00 0.00 39.21 2.52
2494 4669 1.001393 GCCCACCCGATTTCTTCCA 60.001 57.895 0.00 0.00 0.00 3.53
2497 4672 0.328258 CCACCCGATTTCTTCCAGGT 59.672 55.000 0.00 0.00 0.00 4.00
2804 4983 2.570442 TCTTTGGCGTGTTTTGGTTC 57.430 45.000 0.00 0.00 0.00 3.62
2946 5125 1.937191 TTTTGGAAGGGATGGGAAGC 58.063 50.000 0.00 0.00 0.00 3.86
2950 5129 0.041090 GGAAGGGATGGGAAGCCAAA 59.959 55.000 0.00 0.00 0.00 3.28
2957 5136 2.095461 GATGGGAAGCCAAAGAAGACC 58.905 52.381 0.00 0.00 0.00 3.85
2958 5137 0.850100 TGGGAAGCCAAAGAAGACCA 59.150 50.000 0.00 0.00 0.00 4.02
2959 5138 1.216678 TGGGAAGCCAAAGAAGACCAA 59.783 47.619 0.00 0.00 0.00 3.67
2962 5141 2.297315 GGAAGCCAAAGAAGACCAAAGG 59.703 50.000 0.00 0.00 0.00 3.11
2964 5143 0.969149 GCCAAAGAAGACCAAAGGGG 59.031 55.000 0.00 0.00 44.81 4.79
2975 5154 2.613026 CCAAAGGGGTGTTTGTTTCC 57.387 50.000 0.00 0.00 35.93 3.13
2976 5155 1.834263 CCAAAGGGGTGTTTGTTTCCA 59.166 47.619 0.00 0.00 35.93 3.53
2977 5156 2.158971 CCAAAGGGGTGTTTGTTTCCAG 60.159 50.000 0.00 0.00 35.93 3.86
2978 5157 2.763448 CAAAGGGGTGTTTGTTTCCAGA 59.237 45.455 0.00 0.00 33.48 3.86
2980 5159 1.850345 AGGGGTGTTTGTTTCCAGAGA 59.150 47.619 0.00 0.00 0.00 3.10
2981 5160 1.954382 GGGGTGTTTGTTTCCAGAGAC 59.046 52.381 0.00 0.00 0.00 3.36
2982 5161 2.422945 GGGGTGTTTGTTTCCAGAGACT 60.423 50.000 0.00 0.00 0.00 3.24
2984 5163 3.699538 GGGTGTTTGTTTCCAGAGACTTT 59.300 43.478 0.00 0.00 0.00 2.66
2985 5164 4.159693 GGGTGTTTGTTTCCAGAGACTTTT 59.840 41.667 0.00 0.00 0.00 2.27
3008 5187 7.797038 TTTTGTGTAGGGACTAGAAAAAGTC 57.203 36.000 0.00 0.00 41.46 3.01
3019 5198 7.706100 GACTAGAAAAAGTCCCTCTTAGAGA 57.294 40.000 11.32 0.00 40.06 3.10
3020 5199 8.301252 GACTAGAAAAAGTCCCTCTTAGAGAT 57.699 38.462 11.32 0.00 40.06 2.75
3021 5200 8.673456 ACTAGAAAAAGTCCCTCTTAGAGATT 57.327 34.615 11.32 0.00 35.02 2.40
3022 5201 9.106977 ACTAGAAAAAGTCCCTCTTAGAGATTT 57.893 33.333 11.32 3.75 35.02 2.17
3023 5202 9.952030 CTAGAAAAAGTCCCTCTTAGAGATTTT 57.048 33.333 11.32 9.12 35.02 1.82
3044 5223 4.376225 TTTTATCAAACGGGAGGGACTT 57.624 40.909 0.00 0.00 41.55 3.01
3045 5224 4.376225 TTTATCAAACGGGAGGGACTTT 57.624 40.909 0.00 0.00 41.55 2.66
3046 5225 2.971901 ATCAAACGGGAGGGACTTTT 57.028 45.000 0.00 0.00 41.55 2.27
3047 5226 2.740506 TCAAACGGGAGGGACTTTTT 57.259 45.000 0.00 0.00 41.55 1.94
3048 5227 3.860968 TCAAACGGGAGGGACTTTTTA 57.139 42.857 0.00 0.00 41.55 1.52
3049 5228 3.746940 TCAAACGGGAGGGACTTTTTAG 58.253 45.455 0.00 0.00 41.55 1.85
3050 5229 2.817844 CAAACGGGAGGGACTTTTTAGG 59.182 50.000 0.00 0.00 41.55 2.69
3051 5230 0.989602 ACGGGAGGGACTTTTTAGGG 59.010 55.000 0.00 0.00 41.55 3.53
3052 5231 1.282382 CGGGAGGGACTTTTTAGGGA 58.718 55.000 0.00 0.00 41.55 4.20
3053 5232 1.065636 CGGGAGGGACTTTTTAGGGAC 60.066 57.143 0.00 0.00 41.55 4.46
3054 5233 2.276391 GGGAGGGACTTTTTAGGGACT 58.724 52.381 0.00 0.00 41.55 3.85
3055 5234 3.457836 GGGAGGGACTTTTTAGGGACTA 58.542 50.000 0.00 0.00 41.55 2.59
3056 5235 3.848377 GGGAGGGACTTTTTAGGGACTAA 59.152 47.826 0.00 0.00 45.97 2.24
3078 5257 9.449719 ACTAAACTAGTCATTTGGGACTAAATG 57.550 33.333 13.06 13.06 46.59 2.32
3087 5266 7.693969 CATTTGGGACTAAATGAAGAAGACT 57.306 36.000 13.78 0.00 46.13 3.24
3088 5267 7.756558 CATTTGGGACTAAATGAAGAAGACTC 58.243 38.462 13.78 0.00 46.13 3.36
3089 5268 6.688073 TTGGGACTAAATGAAGAAGACTCT 57.312 37.500 0.00 0.00 0.00 3.24
3090 5269 6.287589 TGGGACTAAATGAAGAAGACTCTC 57.712 41.667 0.00 0.00 0.00 3.20
3091 5270 5.780282 TGGGACTAAATGAAGAAGACTCTCA 59.220 40.000 0.00 0.00 0.00 3.27
3092 5271 6.270000 TGGGACTAAATGAAGAAGACTCTCAA 59.730 38.462 0.00 0.00 0.00 3.02
3093 5272 6.816140 GGGACTAAATGAAGAAGACTCTCAAG 59.184 42.308 0.00 0.00 0.00 3.02
3094 5273 6.816140 GGACTAAATGAAGAAGACTCTCAAGG 59.184 42.308 0.00 0.00 0.00 3.61
3095 5274 7.310113 GGACTAAATGAAGAAGACTCTCAAGGA 60.310 40.741 0.00 0.00 0.00 3.36
3096 5275 7.610865 ACTAAATGAAGAAGACTCTCAAGGAG 58.389 38.462 0.00 0.00 46.87 3.69
3097 5276 6.678568 AAATGAAGAAGACTCTCAAGGAGA 57.321 37.500 0.00 0.00 44.45 3.71
3122 5301 2.858787 TTTTGGGACTTTTGGGGACT 57.141 45.000 0.00 0.00 0.00 3.85
3123 5302 2.858787 TTTGGGACTTTTGGGGACTT 57.141 45.000 0.00 0.00 0.00 3.01
3124 5303 2.858787 TTGGGACTTTTGGGGACTTT 57.141 45.000 0.00 0.00 0.00 2.66
3125 5304 2.858787 TGGGACTTTTGGGGACTTTT 57.141 45.000 0.00 0.00 0.00 2.27
3126 5305 2.673258 TGGGACTTTTGGGGACTTTTC 58.327 47.619 0.00 0.00 0.00 2.29
3127 5306 1.968493 GGGACTTTTGGGGACTTTTCC 59.032 52.381 0.00 0.00 41.95 3.13
3128 5307 2.673258 GGACTTTTGGGGACTTTTCCA 58.327 47.619 0.00 0.00 44.98 3.53
3129 5308 3.035363 GGACTTTTGGGGACTTTTCCAA 58.965 45.455 0.00 0.00 44.98 3.53
3130 5309 3.181469 GGACTTTTGGGGACTTTTCCAAC 60.181 47.826 0.00 0.00 44.98 3.77
3131 5310 3.445987 ACTTTTGGGGACTTTTCCAACA 58.554 40.909 0.00 0.00 44.98 3.33
3132 5311 3.841255 ACTTTTGGGGACTTTTCCAACAA 59.159 39.130 0.00 0.00 44.98 2.83
3133 5312 4.473196 ACTTTTGGGGACTTTTCCAACAAT 59.527 37.500 0.00 0.00 44.98 2.71
3134 5313 4.414337 TTTGGGGACTTTTCCAACAATG 57.586 40.909 0.00 0.00 44.98 2.82
3135 5314 3.039252 TGGGGACTTTTCCAACAATGT 57.961 42.857 0.00 0.00 44.98 2.71
3136 5315 2.962421 TGGGGACTTTTCCAACAATGTC 59.038 45.455 0.00 0.00 44.98 3.06
3137 5316 2.299013 GGGGACTTTTCCAACAATGTCC 59.701 50.000 9.10 9.10 44.98 4.02
3138 5317 3.660501 GGACTTTTCCAACAATGTCCC 57.339 47.619 7.08 0.00 41.80 4.46
3139 5318 3.230976 GGACTTTTCCAACAATGTCCCT 58.769 45.455 7.08 0.00 41.80 4.20
3140 5319 3.255888 GGACTTTTCCAACAATGTCCCTC 59.744 47.826 7.08 0.00 41.80 4.30
3141 5320 3.230976 ACTTTTCCAACAATGTCCCTCC 58.769 45.455 0.00 0.00 0.00 4.30
3142 5321 3.230134 CTTTTCCAACAATGTCCCTCCA 58.770 45.455 0.00 0.00 0.00 3.86
3143 5322 3.541242 TTTCCAACAATGTCCCTCCAT 57.459 42.857 0.00 0.00 0.00 3.41
3144 5323 2.512692 TCCAACAATGTCCCTCCATG 57.487 50.000 0.00 0.00 0.00 3.66
3145 5324 0.819582 CCAACAATGTCCCTCCATGC 59.180 55.000 0.00 0.00 0.00 4.06
3146 5325 1.548081 CAACAATGTCCCTCCATGCA 58.452 50.000 0.00 0.00 0.00 3.96
3147 5326 2.104967 CAACAATGTCCCTCCATGCAT 58.895 47.619 0.00 0.00 0.00 3.96
3148 5327 2.498481 CAACAATGTCCCTCCATGCATT 59.502 45.455 0.00 0.00 32.48 3.56
3149 5328 2.381911 ACAATGTCCCTCCATGCATTC 58.618 47.619 0.00 0.00 30.17 2.67
3150 5329 2.291735 ACAATGTCCCTCCATGCATTCA 60.292 45.455 0.00 0.00 30.17 2.57
3151 5330 2.761767 CAATGTCCCTCCATGCATTCAA 59.238 45.455 0.00 0.00 30.17 2.69
3152 5331 2.832643 TGTCCCTCCATGCATTCAAT 57.167 45.000 0.00 0.00 0.00 2.57
3153 5332 2.380941 TGTCCCTCCATGCATTCAATG 58.619 47.619 0.00 0.00 0.00 2.82
3154 5333 1.684983 GTCCCTCCATGCATTCAATGG 59.315 52.381 0.00 0.00 36.82 3.16
3155 5334 0.391597 CCCTCCATGCATTCAATGGC 59.608 55.000 0.00 0.00 35.51 4.40
3156 5335 0.391597 CCTCCATGCATTCAATGGCC 59.608 55.000 0.00 0.00 35.51 5.36
3157 5336 0.391597 CTCCATGCATTCAATGGCCC 59.608 55.000 0.00 0.00 35.51 5.80
3158 5337 1.068417 CCATGCATTCAATGGCCCG 59.932 57.895 0.00 0.00 0.00 6.13
3159 5338 1.593209 CATGCATTCAATGGCCCGC 60.593 57.895 0.00 0.00 0.00 6.13
3160 5339 2.799452 ATGCATTCAATGGCCCGCC 61.799 57.895 0.00 0.00 0.00 6.13
3179 5358 3.935371 ACCCCATGGTGTTGTTTGA 57.065 47.368 11.73 0.00 45.58 2.69
3180 5359 2.397044 ACCCCATGGTGTTGTTTGAT 57.603 45.000 11.73 0.00 45.58 2.57
3181 5360 2.688477 ACCCCATGGTGTTGTTTGATT 58.312 42.857 11.73 0.00 45.58 2.57
3182 5361 2.368221 ACCCCATGGTGTTGTTTGATTG 59.632 45.455 11.73 0.00 45.58 2.67
3183 5362 2.368221 CCCCATGGTGTTGTTTGATTGT 59.632 45.455 11.73 0.00 0.00 2.71
3184 5363 3.181456 CCCCATGGTGTTGTTTGATTGTT 60.181 43.478 11.73 0.00 0.00 2.83
3185 5364 4.039730 CCCCATGGTGTTGTTTGATTGTTA 59.960 41.667 11.73 0.00 0.00 2.41
3186 5365 5.279910 CCCCATGGTGTTGTTTGATTGTTAT 60.280 40.000 11.73 0.00 0.00 1.89
3187 5366 6.229733 CCCATGGTGTTGTTTGATTGTTATT 58.770 36.000 11.73 0.00 0.00 1.40
3188 5367 6.709846 CCCATGGTGTTGTTTGATTGTTATTT 59.290 34.615 11.73 0.00 0.00 1.40
3189 5368 7.228308 CCCATGGTGTTGTTTGATTGTTATTTT 59.772 33.333 11.73 0.00 0.00 1.82
3190 5369 8.619546 CCATGGTGTTGTTTGATTGTTATTTTT 58.380 29.630 2.57 0.00 0.00 1.94
3191 5370 9.649024 CATGGTGTTGTTTGATTGTTATTTTTC 57.351 29.630 0.00 0.00 0.00 2.29
3192 5371 8.777865 TGGTGTTGTTTGATTGTTATTTTTCA 57.222 26.923 0.00 0.00 0.00 2.69
3193 5372 9.388506 TGGTGTTGTTTGATTGTTATTTTTCAT 57.611 25.926 0.00 0.00 0.00 2.57
3213 5392 9.778741 TTTTCATATACTAGGGACAACATGATC 57.221 33.333 0.00 0.00 0.00 2.92
3214 5393 8.491045 TTCATATACTAGGGACAACATGATCA 57.509 34.615 0.00 0.00 0.00 2.92
3215 5394 8.670521 TCATATACTAGGGACAACATGATCAT 57.329 34.615 1.18 1.18 0.00 2.45
3216 5395 9.104713 TCATATACTAGGGACAACATGATCATT 57.895 33.333 5.16 0.00 0.00 2.57
3217 5396 9.730705 CATATACTAGGGACAACATGATCATTT 57.269 33.333 5.16 0.00 0.00 2.32
3224 5403 8.237811 AGGGACAACATGATCATTTAATAACC 57.762 34.615 5.16 3.87 0.00 2.85
3225 5404 8.061304 AGGGACAACATGATCATTTAATAACCT 58.939 33.333 5.16 6.11 0.00 3.50
3226 5405 8.352942 GGGACAACATGATCATTTAATAACCTC 58.647 37.037 5.16 0.00 0.00 3.85
3227 5406 9.125026 GGACAACATGATCATTTAATAACCTCT 57.875 33.333 5.16 0.00 0.00 3.69
3235 5414 8.660435 TGATCATTTAATAACCTCTAGGAAGGG 58.340 37.037 2.23 0.00 41.04 3.95
3236 5415 8.814448 ATCATTTAATAACCTCTAGGAAGGGA 57.186 34.615 2.23 0.00 41.04 4.20
3237 5416 8.030913 TCATTTAATAACCTCTAGGAAGGGAC 57.969 38.462 2.23 0.00 41.04 4.46
3238 5417 7.849904 TCATTTAATAACCTCTAGGAAGGGACT 59.150 37.037 2.23 0.00 41.04 3.85
3239 5418 9.155785 CATTTAATAACCTCTAGGAAGGGACTA 57.844 37.037 2.23 0.00 41.04 2.59
3240 5419 8.779096 TTTAATAACCTCTAGGAAGGGACTAG 57.221 38.462 2.23 0.00 41.04 2.57
3241 5420 6.609379 AATAACCTCTAGGAAGGGACTAGA 57.391 41.667 2.23 0.00 43.33 2.43
3242 5421 4.969136 AACCTCTAGGAAGGGACTAGAA 57.031 45.455 2.23 0.00 44.45 2.10
3243 5422 4.969136 ACCTCTAGGAAGGGACTAGAAA 57.031 45.455 2.23 0.00 44.45 2.52
3244 5423 4.612401 ACCTCTAGGAAGGGACTAGAAAC 58.388 47.826 2.23 0.00 44.45 2.78
3245 5424 4.295506 ACCTCTAGGAAGGGACTAGAAACT 59.704 45.833 2.23 0.00 44.45 2.66
3246 5425 5.222589 ACCTCTAGGAAGGGACTAGAAACTT 60.223 44.000 2.23 0.00 44.45 2.66
3247 5426 5.722441 CCTCTAGGAAGGGACTAGAAACTTT 59.278 44.000 0.00 0.00 44.45 2.66
3248 5427 6.213802 CCTCTAGGAAGGGACTAGAAACTTTT 59.786 42.308 0.00 0.00 44.45 2.27
3249 5428 7.256727 CCTCTAGGAAGGGACTAGAAACTTTTT 60.257 40.741 0.00 0.00 44.45 1.94
3250 5429 8.731591 TCTAGGAAGGGACTAGAAACTTTTTA 57.268 34.615 0.00 0.00 42.78 1.52
3251 5430 8.813951 TCTAGGAAGGGACTAGAAACTTTTTAG 58.186 37.037 0.00 4.29 42.78 1.85
3252 5431 7.390013 AGGAAGGGACTAGAAACTTTTTAGT 57.610 36.000 4.74 4.74 38.49 2.24
3253 5432 7.451732 AGGAAGGGACTAGAAACTTTTTAGTC 58.548 38.462 17.99 17.99 38.49 2.59
3254 5433 7.292827 AGGAAGGGACTAGAAACTTTTTAGTCT 59.707 37.037 22.33 10.29 41.77 3.24
3255 5434 7.603404 GGAAGGGACTAGAAACTTTTTAGTCTC 59.397 40.741 22.33 20.45 42.56 3.36
3256 5435 7.859026 AGGGACTAGAAACTTTTTAGTCTCT 57.141 36.000 21.23 21.23 45.72 3.10
3257 5436 7.892778 GGGACTAGAAACTTTTTAGTCTCTG 57.107 40.000 22.33 0.00 40.27 3.35
3258 5437 6.874664 GGGACTAGAAACTTTTTAGTCTCTGG 59.125 42.308 22.33 0.86 40.27 3.86
3259 5438 7.256225 GGGACTAGAAACTTTTTAGTCTCTGGA 60.256 40.741 22.33 0.00 40.27 3.86
3260 5439 8.148999 GGACTAGAAACTTTTTAGTCTCTGGAA 58.851 37.037 22.33 0.00 41.77 3.53
3261 5440 9.543783 GACTAGAAACTTTTTAGTCTCTGGAAA 57.456 33.333 18.58 0.00 39.93 3.13
3262 5441 9.327628 ACTAGAAACTTTTTAGTCTCTGGAAAC 57.672 33.333 0.00 0.00 0.00 2.78
3263 5442 9.326413 CTAGAAACTTTTTAGTCTCTGGAAACA 57.674 33.333 0.00 0.00 39.59 2.83
3264 5443 8.575649 AGAAACTTTTTAGTCTCTGGAAACAA 57.424 30.769 0.00 0.00 42.06 2.83
3265 5444 9.020731 AGAAACTTTTTAGTCTCTGGAAACAAA 57.979 29.630 0.00 0.00 42.06 2.83
3266 5445 8.981724 AAACTTTTTAGTCTCTGGAAACAAAC 57.018 30.769 0.00 0.00 42.06 2.93
3267 5446 7.696992 ACTTTTTAGTCTCTGGAAACAAACA 57.303 32.000 0.00 0.00 42.06 2.83
3268 5447 8.117813 ACTTTTTAGTCTCTGGAAACAAACAA 57.882 30.769 0.00 0.00 42.06 2.83
3269 5448 8.244113 ACTTTTTAGTCTCTGGAAACAAACAAG 58.756 33.333 0.00 0.00 42.06 3.16
3270 5449 6.693315 TTTAGTCTCTGGAAACAAACAAGG 57.307 37.500 0.00 0.00 42.06 3.61
3271 5450 4.503714 AGTCTCTGGAAACAAACAAGGA 57.496 40.909 0.00 0.00 42.06 3.36
3272 5451 4.455606 AGTCTCTGGAAACAAACAAGGAG 58.544 43.478 0.00 0.00 42.06 3.69
3273 5452 4.164221 AGTCTCTGGAAACAAACAAGGAGA 59.836 41.667 0.00 0.00 42.06 3.71
3274 5453 4.513318 GTCTCTGGAAACAAACAAGGAGAG 59.487 45.833 0.00 0.00 42.06 3.20
3275 5454 4.408921 TCTCTGGAAACAAACAAGGAGAGA 59.591 41.667 0.00 0.00 42.06 3.10
3276 5455 4.451900 TCTGGAAACAAACAAGGAGAGAC 58.548 43.478 0.00 0.00 42.06 3.36
3277 5456 4.164221 TCTGGAAACAAACAAGGAGAGACT 59.836 41.667 0.00 0.00 42.06 3.24
3278 5457 4.855340 TGGAAACAAACAAGGAGAGACTT 58.145 39.130 0.00 0.00 37.44 3.01
3279 5458 5.261216 TGGAAACAAACAAGGAGAGACTTT 58.739 37.500 0.00 0.00 37.44 2.66
3280 5459 5.714806 TGGAAACAAACAAGGAGAGACTTTT 59.285 36.000 0.00 0.00 37.44 2.27
3281 5460 6.210584 TGGAAACAAACAAGGAGAGACTTTTT 59.789 34.615 0.00 0.00 37.44 1.94
3282 5461 7.394923 TGGAAACAAACAAGGAGAGACTTTTTA 59.605 33.333 0.00 0.00 37.44 1.52
3283 5462 7.915923 GGAAACAAACAAGGAGAGACTTTTTAG 59.084 37.037 0.00 0.00 0.00 1.85
3284 5463 6.944234 ACAAACAAGGAGAGACTTTTTAGG 57.056 37.500 0.00 0.00 0.00 2.69
3285 5464 5.828328 ACAAACAAGGAGAGACTTTTTAGGG 59.172 40.000 0.00 0.00 0.00 3.53
3286 5465 5.906772 AACAAGGAGAGACTTTTTAGGGA 57.093 39.130 0.00 0.00 0.00 4.20
3287 5466 5.230323 ACAAGGAGAGACTTTTTAGGGAC 57.770 43.478 0.00 0.00 0.00 4.46
3288 5467 4.908481 ACAAGGAGAGACTTTTTAGGGACT 59.092 41.667 0.00 0.00 46.37 3.85
3289 5468 6.082707 ACAAGGAGAGACTTTTTAGGGACTA 58.917 40.000 0.00 0.00 41.75 2.59
3290 5469 6.731448 ACAAGGAGAGACTTTTTAGGGACTAT 59.269 38.462 0.00 0.00 42.38 2.12
3291 5470 7.899709 ACAAGGAGAGACTTTTTAGGGACTATA 59.100 37.037 0.00 0.00 42.38 1.31
3292 5471 8.417884 CAAGGAGAGACTTTTTAGGGACTATAG 58.582 40.741 0.00 0.00 42.38 1.31
3293 5472 7.884891 AGGAGAGACTTTTTAGGGACTATAGA 58.115 38.462 6.78 0.00 42.38 1.98
3294 5473 7.781219 AGGAGAGACTTTTTAGGGACTATAGAC 59.219 40.741 6.78 0.00 42.38 2.59
3295 5474 7.781219 GGAGAGACTTTTTAGGGACTATAGACT 59.219 40.741 6.78 4.35 42.38 3.24
3296 5475 9.192642 GAGAGACTTTTTAGGGACTATAGACTT 57.807 37.037 6.78 0.00 42.38 3.01
3297 5476 9.549984 AGAGACTTTTTAGGGACTATAGACTTT 57.450 33.333 6.78 0.00 42.38 2.66
3306 5485 7.196637 AGGGACTATAGACTTTTTAGTTGGG 57.803 40.000 6.78 0.00 36.02 4.12
3307 5486 6.964086 AGGGACTATAGACTTTTTAGTTGGGA 59.036 38.462 6.78 0.00 36.02 4.37
3308 5487 7.046652 GGGACTATAGACTTTTTAGTTGGGAC 58.953 42.308 6.78 0.00 0.00 4.46
3309 5488 7.092979 GGGACTATAGACTTTTTAGTTGGGACT 60.093 40.741 6.78 0.00 39.97 3.85
3310 5489 8.975295 GGACTATAGACTTTTTAGTTGGGACTA 58.025 37.037 6.78 0.00 37.33 2.59
3312 5491 9.765295 ACTATAGACTTTTTAGTTGGGACTAGA 57.235 33.333 6.78 0.00 39.43 2.43
3317 5496 9.121658 AGACTTTTTAGTTGGGACTAGAAAAAG 57.878 33.333 17.36 17.36 45.76 2.27
3318 5497 8.818622 ACTTTTTAGTTGGGACTAGAAAAAGT 57.181 30.769 18.18 18.18 46.80 2.66
3342 5521 8.202745 GTCCTAAGACTTATGAATCAAACAGG 57.797 38.462 2.20 0.00 40.10 4.00
3343 5522 7.281100 GTCCTAAGACTTATGAATCAAACAGGG 59.719 40.741 2.20 0.00 40.10 4.45
3344 5523 5.904362 AAGACTTATGAATCAAACAGGGC 57.096 39.130 0.00 0.00 0.00 5.19
3345 5524 4.273318 AGACTTATGAATCAAACAGGGCC 58.727 43.478 0.00 0.00 0.00 5.80
3346 5525 4.018050 AGACTTATGAATCAAACAGGGCCT 60.018 41.667 0.00 0.00 0.00 5.19
3347 5526 5.191722 AGACTTATGAATCAAACAGGGCCTA 59.808 40.000 5.28 0.00 0.00 3.93
3348 5527 5.826643 ACTTATGAATCAAACAGGGCCTAA 58.173 37.500 5.28 0.00 0.00 2.69
3349 5528 6.252995 ACTTATGAATCAAACAGGGCCTAAA 58.747 36.000 5.28 0.00 0.00 1.85
3350 5529 6.897413 ACTTATGAATCAAACAGGGCCTAAAT 59.103 34.615 5.28 0.00 0.00 1.40
3351 5530 5.603170 ATGAATCAAACAGGGCCTAAATG 57.397 39.130 5.28 5.43 0.00 2.32
3352 5531 4.415596 TGAATCAAACAGGGCCTAAATGT 58.584 39.130 5.28 0.00 0.00 2.71
3353 5532 5.575157 TGAATCAAACAGGGCCTAAATGTA 58.425 37.500 5.28 0.00 0.00 2.29
3354 5533 6.013379 TGAATCAAACAGGGCCTAAATGTAA 58.987 36.000 5.28 0.00 0.00 2.41
3366 5545 8.279361 AGGGCCTAAATGTAAACACTGTATATT 58.721 33.333 2.82 0.00 0.00 1.28
3393 5572 4.175787 TGTTGGCGTTTGTTTTGTTACT 57.824 36.364 0.00 0.00 0.00 2.24
3395 5574 5.706916 TGTTGGCGTTTGTTTTGTTACTAA 58.293 33.333 0.00 0.00 0.00 2.24
3396 5575 6.331061 TGTTGGCGTTTGTTTTGTTACTAAT 58.669 32.000 0.00 0.00 0.00 1.73
3397 5576 6.253727 TGTTGGCGTTTGTTTTGTTACTAATG 59.746 34.615 0.00 0.00 0.00 1.90
3398 5577 5.282510 TGGCGTTTGTTTTGTTACTAATGG 58.717 37.500 0.00 0.00 0.00 3.16
3399 5578 4.149221 GGCGTTTGTTTTGTTACTAATGGC 59.851 41.667 0.00 0.00 37.83 4.40
3400 5579 4.740695 GCGTTTGTTTTGTTACTAATGGCA 59.259 37.500 0.00 0.00 0.00 4.92
3401 5580 5.331980 GCGTTTGTTTTGTTACTAATGGCAC 60.332 40.000 0.00 0.00 0.00 5.01
3402 5581 5.174216 CGTTTGTTTTGTTACTAATGGCACC 59.826 40.000 0.00 0.00 0.00 5.01
3403 5582 4.491234 TGTTTTGTTACTAATGGCACCG 57.509 40.909 0.00 0.00 0.00 4.94
3404 5583 3.253677 TGTTTTGTTACTAATGGCACCGG 59.746 43.478 0.00 0.00 0.00 5.28
3406 5585 0.741574 TGTTACTAATGGCACCGGCG 60.742 55.000 0.00 0.00 42.47 6.46
3407 5586 0.741927 GTTACTAATGGCACCGGCGT 60.742 55.000 6.01 0.00 42.47 5.68
3409 5588 1.890625 TACTAATGGCACCGGCGTGT 61.891 55.000 6.01 0.00 42.39 4.49
3410 5589 2.435234 TAATGGCACCGGCGTGTC 60.435 61.111 6.01 6.64 45.28 3.67
3431 5610 5.221561 TGTCGTTGGGGACATTCGATATATT 60.222 40.000 0.00 0.00 44.30 1.28
3456 5635 9.638239 TTTTGGCATTTATTTTCTTGCTACTAG 57.362 29.630 0.00 0.00 35.46 2.57
3457 5636 6.795399 TGGCATTTATTTTCTTGCTACTAGC 58.205 36.000 0.61 0.61 42.82 3.42
3458 5637 6.603201 TGGCATTTATTTTCTTGCTACTAGCT 59.397 34.615 9.49 0.00 42.97 3.32
3459 5638 6.914757 GGCATTTATTTTCTTGCTACTAGCTG 59.085 38.462 9.49 3.03 42.97 4.24
3460 5639 6.914757 GCATTTATTTTCTTGCTACTAGCTGG 59.085 38.462 9.49 0.00 42.97 4.85
3461 5640 7.420800 CATTTATTTTCTTGCTACTAGCTGGG 58.579 38.462 9.49 0.00 42.97 4.45
3462 5641 4.576330 ATTTTCTTGCTACTAGCTGGGT 57.424 40.909 9.49 0.46 42.97 4.51
3463 5642 3.334583 TTTCTTGCTACTAGCTGGGTG 57.665 47.619 9.49 0.00 42.97 4.61
3464 5643 1.938585 TCTTGCTACTAGCTGGGTGT 58.061 50.000 9.49 0.00 42.97 4.16
3465 5644 1.825474 TCTTGCTACTAGCTGGGTGTC 59.175 52.381 9.49 0.00 42.97 3.67
3466 5645 1.827969 CTTGCTACTAGCTGGGTGTCT 59.172 52.381 9.49 0.00 42.97 3.41
3467 5646 1.186200 TGCTACTAGCTGGGTGTCTG 58.814 55.000 9.49 0.00 42.97 3.51
3468 5647 1.272480 TGCTACTAGCTGGGTGTCTGA 60.272 52.381 9.49 0.00 42.97 3.27
3469 5648 2.035632 GCTACTAGCTGGGTGTCTGAT 58.964 52.381 0.85 0.00 38.45 2.90
3470 5649 2.035321 GCTACTAGCTGGGTGTCTGATC 59.965 54.545 0.85 0.00 38.45 2.92
3471 5650 1.490574 ACTAGCTGGGTGTCTGATCC 58.509 55.000 0.85 0.00 0.00 3.36
3472 5651 1.273267 ACTAGCTGGGTGTCTGATCCA 60.273 52.381 0.85 0.00 0.00 3.41
3473 5652 1.137872 CTAGCTGGGTGTCTGATCCAC 59.862 57.143 0.00 0.00 0.00 4.02
3474 5653 0.546267 AGCTGGGTGTCTGATCCACT 60.546 55.000 0.00 0.00 33.31 4.00
3475 5654 1.195115 GCTGGGTGTCTGATCCACTA 58.805 55.000 0.00 0.00 33.31 2.74
3476 5655 1.555075 GCTGGGTGTCTGATCCACTAA 59.445 52.381 0.00 0.00 33.31 2.24
3477 5656 2.171448 GCTGGGTGTCTGATCCACTAAT 59.829 50.000 0.00 0.00 33.31 1.73
3478 5657 3.801698 CTGGGTGTCTGATCCACTAATG 58.198 50.000 0.00 0.00 33.31 1.90
3479 5658 3.181329 TGGGTGTCTGATCCACTAATGT 58.819 45.455 0.00 0.00 33.31 2.71
3480 5659 4.358214 TGGGTGTCTGATCCACTAATGTA 58.642 43.478 0.00 0.00 33.31 2.29
3481 5660 4.780554 TGGGTGTCTGATCCACTAATGTAA 59.219 41.667 0.00 0.00 33.31 2.41
3482 5661 5.428457 TGGGTGTCTGATCCACTAATGTAAT 59.572 40.000 0.00 0.00 33.31 1.89
3492 5671 8.271458 TGATCCACTAATGTAATAAGCTCCAAA 58.729 33.333 0.00 0.00 0.00 3.28
3502 5681 0.031178 AAGCTCCAAACAAGCAAGCG 59.969 50.000 0.00 0.00 42.35 4.68
3513 5692 2.035832 ACAAGCAAGCGCCTTGTAATTT 59.964 40.909 23.41 4.44 42.77 1.82
3515 5694 3.487563 AGCAAGCGCCTTGTAATTTAC 57.512 42.857 2.29 0.00 42.77 2.01
3526 5705 6.143278 CGCCTTGTAATTTACTGGTGAAAAAC 59.857 38.462 18.89 4.87 36.42 2.43
3537 5716 2.190161 GGTGAAAAACGAACAAGTGGC 58.810 47.619 0.00 0.00 0.00 5.01
3594 5773 5.665916 TCAGACATGAAAGCTATGTGAGA 57.334 39.130 5.33 1.15 38.78 3.27
3623 5802 7.562640 TGCTACTAATTAATTCTATCACGCG 57.437 36.000 3.53 3.53 0.00 6.01
3627 5806 9.990888 CTACTAATTAATTCTATCACGCGTTTC 57.009 33.333 10.22 0.00 0.00 2.78
3653 5832 6.929049 CACTTCCTCACAGTTACTCATTTACA 59.071 38.462 0.00 0.00 0.00 2.41
3659 5838 6.598525 TCACAGTTACTCATTTACAATTGCG 58.401 36.000 5.05 0.00 0.00 4.85
3679 5858 4.279671 TGCGGACATAGAAACAAACCAAAT 59.720 37.500 0.00 0.00 0.00 2.32
3685 5864 9.921637 GGACATAGAAACAAACCAAATTTCATA 57.078 29.630 0.00 0.00 35.26 2.15
3693 5872 9.625747 AAACAAACCAAATTTCATACTTTCCAT 57.374 25.926 0.00 0.00 0.00 3.41
3695 5874 7.598493 ACAAACCAAATTTCATACTTTCCATCG 59.402 33.333 0.00 0.00 0.00 3.84
3698 5877 8.343168 ACCAAATTTCATACTTTCCATCGTAA 57.657 30.769 0.00 0.00 0.00 3.18
3699 5878 8.966868 ACCAAATTTCATACTTTCCATCGTAAT 58.033 29.630 0.00 0.00 0.00 1.89
3701 5880 8.745837 CAAATTTCATACTTTCCATCGTAATGC 58.254 33.333 0.00 0.00 0.00 3.56
3709 5888 1.616374 TCCATCGTAATGCGGATGCTA 59.384 47.619 0.00 0.00 43.34 3.49
3710 5889 2.233676 TCCATCGTAATGCGGATGCTAT 59.766 45.455 0.00 0.00 43.34 2.97
3726 5905 1.401552 GCTATTTTCTGGTGCATGCGA 59.598 47.619 14.09 0.40 0.00 5.10
3737 5916 0.322366 TGCATGCGAAGGGTGAATCA 60.322 50.000 14.09 0.00 0.00 2.57
3743 5922 4.898829 TGCGAAGGGTGAATCATATTTG 57.101 40.909 0.00 0.00 0.00 2.32
3744 5923 4.522114 TGCGAAGGGTGAATCATATTTGA 58.478 39.130 0.00 0.00 36.00 2.69
3745 5924 5.132502 TGCGAAGGGTGAATCATATTTGAT 58.867 37.500 0.00 0.00 44.62 2.57
3746 5925 5.008911 TGCGAAGGGTGAATCATATTTGATG 59.991 40.000 0.00 0.00 41.83 3.07
3747 5926 5.455392 CGAAGGGTGAATCATATTTGATGC 58.545 41.667 0.00 0.00 41.83 3.91
3748 5927 5.563475 CGAAGGGTGAATCATATTTGATGCC 60.563 44.000 0.00 3.48 41.83 4.40
3749 5928 4.154942 AGGGTGAATCATATTTGATGCCC 58.845 43.478 17.87 17.87 41.83 5.36
3750 5929 3.057315 GGGTGAATCATATTTGATGCCCG 60.057 47.826 13.69 0.00 41.83 6.13
3751 5930 3.568538 GTGAATCATATTTGATGCCCGC 58.431 45.455 0.00 0.00 41.83 6.13
3752 5931 3.004629 GTGAATCATATTTGATGCCCGCA 59.995 43.478 0.00 0.00 41.83 5.69
3753 5932 3.253921 TGAATCATATTTGATGCCCGCAG 59.746 43.478 0.00 0.00 41.83 5.18
3754 5933 2.165167 ATCATATTTGATGCCCGCAGG 58.835 47.619 0.00 0.00 44.54 4.85
3767 5946 2.094904 CGCAGGGGTTAAATGGACG 58.905 57.895 0.00 0.00 0.00 4.79
3768 5947 1.807226 GCAGGGGTTAAATGGACGC 59.193 57.895 0.00 0.00 0.00 5.19
3770 5949 3.504927 GGGGTTAAATGGACGCCG 58.495 61.111 0.00 0.00 39.80 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.496070 TCTGCGTGCTCCAAGTATTAGT 59.504 45.455 0.00 0.00 0.00 2.24
88 89 0.742281 CAAGCAGTCATCACCTCCCG 60.742 60.000 0.00 0.00 0.00 5.14
157 158 3.250762 TGAAACTGAAAGCCTTGATCGTG 59.749 43.478 0.00 0.00 37.60 4.35
180 181 1.421268 TCAGGCACAACATTCTCACCT 59.579 47.619 0.00 0.00 0.00 4.00
223 224 6.263842 TCTTCATGAAACTGAGTGAATTGCTT 59.736 34.615 9.88 0.00 30.97 3.91
523 531 4.142988 GCGTCCGTTCTGTTTTTCATATGA 60.143 41.667 0.00 0.00 0.00 2.15
594 602 3.047877 CAACTCCAACGGGCGGAC 61.048 66.667 0.00 0.00 0.00 4.79
597 605 2.501223 TAGAGCAACTCCAACGGGCG 62.501 60.000 0.00 0.00 0.00 6.13
598 606 0.321298 TTAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
599 607 1.002087 AGTTAGAGCAACTCCAACGGG 59.998 52.381 1.24 0.00 44.48 5.28
600 608 2.457366 AGTTAGAGCAACTCCAACGG 57.543 50.000 1.24 0.00 44.48 4.44
601 609 5.892568 AGTATAGTTAGAGCAACTCCAACG 58.107 41.667 1.24 0.00 44.48 4.10
602 610 8.549338 AAAAGTATAGTTAGAGCAACTCCAAC 57.451 34.615 0.00 0.00 44.48 3.77
610 618 9.443323 TGCAACAATAAAAGTATAGTTAGAGCA 57.557 29.630 0.00 0.00 0.00 4.26
620 628 8.940768 AAACACAGTTGCAACAATAAAAGTAT 57.059 26.923 30.11 3.54 0.00 2.12
631 639 5.220209 GCTTCTTGTAAAACACAGTTGCAAC 60.220 40.000 22.17 22.17 38.72 4.17
665 676 2.631160 TCTTCCACGTCACCACAAAT 57.369 45.000 0.00 0.00 0.00 2.32
696 707 5.878116 AGCCGCATATGTTAACTACTTCAAA 59.122 36.000 7.22 0.00 0.00 2.69
697 708 5.293324 CAGCCGCATATGTTAACTACTTCAA 59.707 40.000 7.22 0.00 0.00 2.69
698 709 4.808895 CAGCCGCATATGTTAACTACTTCA 59.191 41.667 7.22 0.00 0.00 3.02
699 710 4.318831 GCAGCCGCATATGTTAACTACTTC 60.319 45.833 7.22 0.00 38.36 3.01
700 711 3.560068 GCAGCCGCATATGTTAACTACTT 59.440 43.478 7.22 0.00 38.36 2.24
723 734 1.269723 CACCACTCGCTCACTCACTTA 59.730 52.381 0.00 0.00 0.00 2.24
735 746 1.078214 ATGGGATGTGCACCACTCG 60.078 57.895 15.69 0.00 40.05 4.18
747 758 0.342665 TGGCCAAAATGGGATGGGAT 59.657 50.000 0.61 0.00 38.19 3.85
772 784 3.065371 ACTGAGCTTTCCAAACGACTTTG 59.935 43.478 0.00 0.00 37.16 2.77
792 804 3.877508 CCGAGGAAGAAAGACAAACAACT 59.122 43.478 0.00 0.00 0.00 3.16
803 815 0.034896 GGCACAGTCCGAGGAAGAAA 59.965 55.000 0.00 0.00 0.00 2.52
824 836 1.302511 CAACTACCCAAGCCGCACT 60.303 57.895 0.00 0.00 0.00 4.40
825 837 2.332654 CCAACTACCCAAGCCGCAC 61.333 63.158 0.00 0.00 0.00 5.34
831 855 1.614317 CCAAGCTCCCAACTACCCAAG 60.614 57.143 0.00 0.00 0.00 3.61
847 871 4.690719 TACACGCCCACGCCCAAG 62.691 66.667 0.00 0.00 45.53 3.61
848 872 4.690719 CTACACGCCCACGCCCAA 62.691 66.667 0.00 0.00 45.53 4.12
861 978 1.171308 GACCAGTCGTGCTACCTACA 58.829 55.000 0.00 0.00 0.00 2.74
889 1006 1.715585 CGCGTGCTCCACCTAAATG 59.284 57.895 0.00 0.00 0.00 2.32
915 1032 5.505159 CGCATGCATATAAATATGGGAGCTG 60.505 44.000 19.57 0.00 40.31 4.24
940 1057 1.244816 TAGATCCACCATCCGCGTAG 58.755 55.000 4.92 0.00 30.71 3.51
941 1058 1.694844 TTAGATCCACCATCCGCGTA 58.305 50.000 4.92 0.00 30.71 4.42
942 1059 1.000955 GATTAGATCCACCATCCGCGT 59.999 52.381 4.92 0.00 30.71 6.01
943 1060 1.714794 GATTAGATCCACCATCCGCG 58.285 55.000 0.00 0.00 30.71 6.46
955 1072 6.938030 TCGTTTGTTTGGTAGTTGGATTAGAT 59.062 34.615 0.00 0.00 0.00 1.98
956 1073 6.289834 TCGTTTGTTTGGTAGTTGGATTAGA 58.710 36.000 0.00 0.00 0.00 2.10
958 1075 6.238703 GGTTCGTTTGTTTGGTAGTTGGATTA 60.239 38.462 0.00 0.00 0.00 1.75
959 1076 5.450826 GGTTCGTTTGTTTGGTAGTTGGATT 60.451 40.000 0.00 0.00 0.00 3.01
960 1077 4.037089 GGTTCGTTTGTTTGGTAGTTGGAT 59.963 41.667 0.00 0.00 0.00 3.41
961 1078 3.377798 GGTTCGTTTGTTTGGTAGTTGGA 59.622 43.478 0.00 0.00 0.00 3.53
969 1086 0.661020 AGCTCGGTTCGTTTGTTTGG 59.339 50.000 0.00 0.00 0.00 3.28
989 1106 0.108207 GTGATCCATGGCTGCTAGCT 59.892 55.000 17.23 0.00 41.99 3.32
990 1107 1.226686 CGTGATCCATGGCTGCTAGC 61.227 60.000 6.96 8.10 41.46 3.42
991 1108 0.390492 TCGTGATCCATGGCTGCTAG 59.610 55.000 6.96 0.00 0.00 3.42
992 1109 0.104855 GTCGTGATCCATGGCTGCTA 59.895 55.000 6.96 0.00 0.00 3.49
1727 1878 1.746615 TGGAGGCGCTTCATCTTGC 60.747 57.895 21.86 3.03 0.00 4.01
1760 1911 1.485895 TGATGAAGCCGTCCATCATGA 59.514 47.619 0.00 0.00 42.76 3.07
1968 2128 7.609918 TGTAGATATGGTCAGCAAAGCTTTTAA 59.390 33.333 9.53 0.00 36.40 1.52
1969 2129 7.109501 TGTAGATATGGTCAGCAAAGCTTTTA 58.890 34.615 9.53 0.00 36.40 1.52
1970 2130 5.945784 TGTAGATATGGTCAGCAAAGCTTTT 59.054 36.000 9.53 0.00 36.40 2.27
1971 2131 5.500234 TGTAGATATGGTCAGCAAAGCTTT 58.500 37.500 5.69 5.69 36.40 3.51
1989 2149 6.187727 ACCTTGGAACTTTGATCTTGTAGA 57.812 37.500 0.00 0.00 0.00 2.59
1999 2161 9.367444 CTTATACTAGTGTACCTTGGAACTTTG 57.633 37.037 5.39 0.00 0.00 2.77
2092 4267 9.855021 AAGGTAAAATGTGCATTTAGTTCATAC 57.145 29.630 10.14 7.99 39.88 2.39
2253 4428 0.031721 GTCGGTTTCTGTGACGAGGT 59.968 55.000 0.00 0.00 35.88 3.85
2263 4438 3.469863 TTGCGGCAGGTCGGTTTCT 62.470 57.895 1.67 0.00 0.00 2.52
2267 4442 4.681978 GAGTTGCGGCAGGTCGGT 62.682 66.667 1.67 0.00 0.00 4.69
2491 4666 3.164977 TCGTGCAACCCACCTGGA 61.165 61.111 0.00 0.00 41.53 3.86
2494 4669 2.743718 CTCTCGTGCAACCCACCT 59.256 61.111 0.00 0.00 41.53 4.00
2804 4983 1.687123 AGGTACATCGGATCGAAAGGG 59.313 52.381 0.00 0.00 39.99 3.95
2843 5022 6.452494 TTCTTTTACAACCGATCCAAACAA 57.548 33.333 0.00 0.00 0.00 2.83
2888 5067 8.893563 ATTTTTCCAGAGTAATTGATAACCCA 57.106 30.769 0.00 0.00 0.00 4.51
2917 5096 8.910188 TCCCATCCCTTCCAAAATAATATCATA 58.090 33.333 0.00 0.00 0.00 2.15
2922 5101 5.838521 GCTTCCCATCCCTTCCAAAATAATA 59.161 40.000 0.00 0.00 0.00 0.98
2957 5136 2.763448 TCTGGAAACAAACACCCCTTTG 59.237 45.455 0.00 0.00 42.06 2.77
2958 5137 3.031013 CTCTGGAAACAAACACCCCTTT 58.969 45.455 0.00 0.00 42.06 3.11
2959 5138 2.243736 TCTCTGGAAACAAACACCCCTT 59.756 45.455 0.00 0.00 42.06 3.95
2962 5141 2.932261 AGTCTCTGGAAACAAACACCC 58.068 47.619 0.00 0.00 42.06 4.61
2984 5163 7.797038 GACTTTTTCTAGTCCCTACACAAAA 57.203 36.000 0.00 0.00 38.88 2.44
2995 5174 7.706100 TCTCTAAGAGGGACTTTTTCTAGTC 57.294 40.000 0.00 0.00 41.55 2.59
2996 5175 8.673456 AATCTCTAAGAGGGACTTTTTCTAGT 57.327 34.615 0.00 0.00 41.55 2.57
2997 5176 9.952030 AAAATCTCTAAGAGGGACTTTTTCTAG 57.048 33.333 0.00 0.00 41.55 2.43
3022 5201 4.376225 AGTCCCTCCCGTTTGATAAAAA 57.624 40.909 0.00 0.00 0.00 1.94
3023 5202 4.376225 AAGTCCCTCCCGTTTGATAAAA 57.624 40.909 0.00 0.00 0.00 1.52
3024 5203 4.376225 AAAGTCCCTCCCGTTTGATAAA 57.624 40.909 0.00 0.00 0.00 1.40
3025 5204 4.376225 AAAAGTCCCTCCCGTTTGATAA 57.624 40.909 0.00 0.00 0.00 1.75
3026 5205 4.376225 AAAAAGTCCCTCCCGTTTGATA 57.624 40.909 0.00 0.00 0.00 2.15
3027 5206 2.971901 AAAAGTCCCTCCCGTTTGAT 57.028 45.000 0.00 0.00 0.00 2.57
3028 5207 2.740506 AAAAAGTCCCTCCCGTTTGA 57.259 45.000 0.00 0.00 0.00 2.69
3029 5208 2.817844 CCTAAAAAGTCCCTCCCGTTTG 59.182 50.000 0.00 0.00 0.00 2.93
3030 5209 2.224942 CCCTAAAAAGTCCCTCCCGTTT 60.225 50.000 0.00 0.00 0.00 3.60
3031 5210 1.353358 CCCTAAAAAGTCCCTCCCGTT 59.647 52.381 0.00 0.00 0.00 4.44
3032 5211 0.989602 CCCTAAAAAGTCCCTCCCGT 59.010 55.000 0.00 0.00 0.00 5.28
3033 5212 1.065636 GTCCCTAAAAAGTCCCTCCCG 60.066 57.143 0.00 0.00 0.00 5.14
3034 5213 2.276391 AGTCCCTAAAAAGTCCCTCCC 58.724 52.381 0.00 0.00 0.00 4.30
3035 5214 5.013913 AGTTTAGTCCCTAAAAAGTCCCTCC 59.986 44.000 0.00 0.00 37.62 4.30
3036 5215 6.124316 AGTTTAGTCCCTAAAAAGTCCCTC 57.876 41.667 0.00 0.00 37.62 4.30
3037 5216 6.791466 ACTAGTTTAGTCCCTAAAAAGTCCCT 59.209 38.462 0.00 0.00 37.62 4.20
3038 5217 7.013823 ACTAGTTTAGTCCCTAAAAAGTCCC 57.986 40.000 0.00 0.00 37.62 4.46
3052 5231 9.449719 CATTTAGTCCCAAATGACTAGTTTAGT 57.550 33.333 0.00 0.00 45.77 2.24
3053 5232 9.667107 TCATTTAGTCCCAAATGACTAGTTTAG 57.333 33.333 0.00 0.00 45.46 1.85
3063 5242 7.609532 AGAGTCTTCTTCATTTAGTCCCAAATG 59.390 37.037 2.83 2.83 44.00 2.32
3064 5243 7.694093 AGAGTCTTCTTCATTTAGTCCCAAAT 58.306 34.615 0.00 0.00 0.00 2.32
3065 5244 7.079451 AGAGTCTTCTTCATTTAGTCCCAAA 57.921 36.000 0.00 0.00 0.00 3.28
3066 5245 6.270000 TGAGAGTCTTCTTCATTTAGTCCCAA 59.730 38.462 0.00 0.00 32.53 4.12
3067 5246 5.780282 TGAGAGTCTTCTTCATTTAGTCCCA 59.220 40.000 0.00 0.00 32.53 4.37
3068 5247 6.287589 TGAGAGTCTTCTTCATTTAGTCCC 57.712 41.667 0.00 0.00 32.53 4.46
3069 5248 6.816140 CCTTGAGAGTCTTCTTCATTTAGTCC 59.184 42.308 0.00 0.00 32.53 3.85
3070 5249 7.607250 TCCTTGAGAGTCTTCTTCATTTAGTC 58.393 38.462 0.00 0.00 32.53 2.59
3071 5250 7.453126 TCTCCTTGAGAGTCTTCTTCATTTAGT 59.547 37.037 0.00 0.00 43.71 2.24
3072 5251 7.835822 TCTCCTTGAGAGTCTTCTTCATTTAG 58.164 38.462 0.00 0.00 43.71 1.85
3073 5252 7.782897 TCTCCTTGAGAGTCTTCTTCATTTA 57.217 36.000 0.00 0.00 43.71 1.40
3074 5253 6.678568 TCTCCTTGAGAGTCTTCTTCATTT 57.321 37.500 0.00 0.00 43.71 2.32
3102 5281 3.123392 AGTCCCCAAAAGTCCCAAAAA 57.877 42.857 0.00 0.00 0.00 1.94
3103 5282 2.858787 AGTCCCCAAAAGTCCCAAAA 57.141 45.000 0.00 0.00 0.00 2.44
3104 5283 2.858787 AAGTCCCCAAAAGTCCCAAA 57.141 45.000 0.00 0.00 0.00 3.28
3105 5284 2.858787 AAAGTCCCCAAAAGTCCCAA 57.141 45.000 0.00 0.00 0.00 4.12
3106 5285 2.673258 GAAAAGTCCCCAAAAGTCCCA 58.327 47.619 0.00 0.00 0.00 4.37
3107 5286 1.968493 GGAAAAGTCCCCAAAAGTCCC 59.032 52.381 0.00 0.00 38.08 4.46
3108 5287 2.673258 TGGAAAAGTCCCCAAAAGTCC 58.327 47.619 0.00 0.00 44.23 3.85
3109 5288 3.449377 TGTTGGAAAAGTCCCCAAAAGTC 59.551 43.478 0.00 0.00 44.23 3.01
3110 5289 3.445987 TGTTGGAAAAGTCCCCAAAAGT 58.554 40.909 0.00 0.00 44.23 2.66
3111 5290 4.479786 TTGTTGGAAAAGTCCCCAAAAG 57.520 40.909 0.00 0.00 44.23 2.27
3112 5291 4.226168 ACATTGTTGGAAAAGTCCCCAAAA 59.774 37.500 0.00 0.00 44.23 2.44
3113 5292 3.777522 ACATTGTTGGAAAAGTCCCCAAA 59.222 39.130 0.00 0.00 44.23 3.28
3114 5293 3.379452 ACATTGTTGGAAAAGTCCCCAA 58.621 40.909 0.00 0.00 44.23 4.12
3115 5294 2.962421 GACATTGTTGGAAAAGTCCCCA 59.038 45.455 0.00 0.00 44.23 4.96
3116 5295 2.299013 GGACATTGTTGGAAAAGTCCCC 59.701 50.000 0.00 0.00 44.23 4.81
3117 5296 3.660501 GGACATTGTTGGAAAAGTCCC 57.339 47.619 0.00 0.00 44.23 4.46
3118 5297 3.230976 AGGGACATTGTTGGAAAAGTCC 58.769 45.455 0.00 0.00 45.21 3.85
3119 5298 3.255888 GGAGGGACATTGTTGGAAAAGTC 59.744 47.826 0.00 0.00 0.00 3.01
3120 5299 3.230976 GGAGGGACATTGTTGGAAAAGT 58.769 45.455 0.00 0.00 0.00 2.66
3121 5300 3.230134 TGGAGGGACATTGTTGGAAAAG 58.770 45.455 0.00 0.00 0.00 2.27
3122 5301 3.320610 TGGAGGGACATTGTTGGAAAA 57.679 42.857 0.00 0.00 0.00 2.29
3123 5302 3.164268 CATGGAGGGACATTGTTGGAAA 58.836 45.455 0.00 0.00 0.00 3.13
3124 5303 2.806434 CATGGAGGGACATTGTTGGAA 58.194 47.619 0.00 0.00 0.00 3.53
3125 5304 1.616725 GCATGGAGGGACATTGTTGGA 60.617 52.381 0.00 0.00 0.00 3.53
3126 5305 0.819582 GCATGGAGGGACATTGTTGG 59.180 55.000 0.00 0.00 0.00 3.77
3127 5306 1.548081 TGCATGGAGGGACATTGTTG 58.452 50.000 0.00 0.00 0.00 3.33
3128 5307 2.537633 ATGCATGGAGGGACATTGTT 57.462 45.000 0.00 0.00 0.00 2.83
3129 5308 2.291735 TGAATGCATGGAGGGACATTGT 60.292 45.455 0.00 0.00 33.07 2.71
3130 5309 2.380941 TGAATGCATGGAGGGACATTG 58.619 47.619 0.00 0.00 33.07 2.82
3131 5310 2.832643 TGAATGCATGGAGGGACATT 57.167 45.000 0.00 0.00 35.52 2.71
3132 5311 2.832643 TTGAATGCATGGAGGGACAT 57.167 45.000 0.00 0.00 0.00 3.06
3133 5312 2.380941 CATTGAATGCATGGAGGGACA 58.619 47.619 0.00 0.00 0.00 4.02
3134 5313 1.684983 CCATTGAATGCATGGAGGGAC 59.315 52.381 0.00 0.00 37.66 4.46
3135 5314 2.030571 GCCATTGAATGCATGGAGGGA 61.031 52.381 7.48 0.00 37.66 4.20
3136 5315 0.391597 GCCATTGAATGCATGGAGGG 59.608 55.000 7.48 5.62 37.66 4.30
3137 5316 0.391597 GGCCATTGAATGCATGGAGG 59.608 55.000 7.48 3.83 37.66 4.30
3138 5317 0.391597 GGGCCATTGAATGCATGGAG 59.608 55.000 4.39 0.00 37.66 3.86
3139 5318 1.393487 CGGGCCATTGAATGCATGGA 61.393 55.000 4.39 0.00 37.66 3.41
3140 5319 1.068417 CGGGCCATTGAATGCATGG 59.932 57.895 4.39 0.00 38.45 3.66
3141 5320 1.593209 GCGGGCCATTGAATGCATG 60.593 57.895 4.39 0.00 0.00 4.06
3142 5321 2.799452 GGCGGGCCATTGAATGCAT 61.799 57.895 4.39 0.00 35.81 3.96
3143 5322 3.459965 GGCGGGCCATTGAATGCA 61.460 61.111 4.39 0.00 35.81 3.96
3144 5323 3.459965 TGGCGGGCCATTGAATGC 61.460 61.111 8.62 0.00 41.89 3.56
3162 5341 2.368221 ACAATCAAACAACACCATGGGG 59.632 45.455 14.08 14.08 41.29 4.96
3163 5342 3.749665 ACAATCAAACAACACCATGGG 57.250 42.857 18.09 7.72 0.00 4.00
3164 5343 7.727331 AAATAACAATCAAACAACACCATGG 57.273 32.000 11.19 11.19 0.00 3.66
3165 5344 9.649024 GAAAAATAACAATCAAACAACACCATG 57.351 29.630 0.00 0.00 0.00 3.66
3166 5345 9.388506 TGAAAAATAACAATCAAACAACACCAT 57.611 25.926 0.00 0.00 0.00 3.55
3167 5346 8.777865 TGAAAAATAACAATCAAACAACACCA 57.222 26.923 0.00 0.00 0.00 4.17
3187 5366 9.778741 GATCATGTTGTCCCTAGTATATGAAAA 57.221 33.333 0.00 0.00 0.00 2.29
3188 5367 8.933653 TGATCATGTTGTCCCTAGTATATGAAA 58.066 33.333 0.00 0.00 0.00 2.69
3189 5368 8.491045 TGATCATGTTGTCCCTAGTATATGAA 57.509 34.615 0.00 0.00 0.00 2.57
3190 5369 8.670521 ATGATCATGTTGTCCCTAGTATATGA 57.329 34.615 7.59 0.00 0.00 2.15
3191 5370 9.730705 AAATGATCATGTTGTCCCTAGTATATG 57.269 33.333 9.46 0.00 0.00 1.78
3198 5377 9.349713 GGTTATTAAATGATCATGTTGTCCCTA 57.650 33.333 9.46 0.00 0.00 3.53
3199 5378 8.061304 AGGTTATTAAATGATCATGTTGTCCCT 58.939 33.333 9.46 7.01 0.00 4.20
3200 5379 8.237811 AGGTTATTAAATGATCATGTTGTCCC 57.762 34.615 9.46 4.83 0.00 4.46
3201 5380 9.125026 AGAGGTTATTAAATGATCATGTTGTCC 57.875 33.333 9.46 6.71 0.00 4.02
3209 5388 8.660435 CCCTTCCTAGAGGTTATTAAATGATCA 58.340 37.037 0.00 0.00 34.88 2.92
3210 5389 8.881262 TCCCTTCCTAGAGGTTATTAAATGATC 58.119 37.037 0.00 0.00 34.88 2.92
3211 5390 8.661345 GTCCCTTCCTAGAGGTTATTAAATGAT 58.339 37.037 0.00 0.00 34.88 2.45
3212 5391 7.849904 AGTCCCTTCCTAGAGGTTATTAAATGA 59.150 37.037 0.00 0.00 34.88 2.57
3213 5392 8.035448 AGTCCCTTCCTAGAGGTTATTAAATG 57.965 38.462 0.00 0.00 34.88 2.32
3214 5393 9.382307 CTAGTCCCTTCCTAGAGGTTATTAAAT 57.618 37.037 0.00 0.00 35.01 1.40
3215 5394 8.572221 TCTAGTCCCTTCCTAGAGGTTATTAAA 58.428 37.037 0.00 0.00 36.78 1.52
3216 5395 8.122646 TCTAGTCCCTTCCTAGAGGTTATTAA 57.877 38.462 0.00 0.00 36.78 1.40
3217 5396 7.718399 TCTAGTCCCTTCCTAGAGGTTATTA 57.282 40.000 0.00 0.00 36.78 0.98
3218 5397 6.609379 TCTAGTCCCTTCCTAGAGGTTATT 57.391 41.667 0.00 0.00 36.78 1.40
3219 5398 6.609379 TTCTAGTCCCTTCCTAGAGGTTAT 57.391 41.667 0.00 0.00 41.31 1.89
3220 5399 6.010918 AGTTTCTAGTCCCTTCCTAGAGGTTA 60.011 42.308 0.00 0.00 41.31 2.85
3221 5400 4.969136 TTCTAGTCCCTTCCTAGAGGTT 57.031 45.455 0.00 0.00 41.31 3.50
3222 5401 4.295506 AGTTTCTAGTCCCTTCCTAGAGGT 59.704 45.833 0.00 0.00 41.31 3.85
3223 5402 4.874199 AGTTTCTAGTCCCTTCCTAGAGG 58.126 47.826 0.00 0.00 41.31 3.69
3224 5403 6.860790 AAAGTTTCTAGTCCCTTCCTAGAG 57.139 41.667 0.00 0.00 41.31 2.43
3225 5404 7.628501 AAAAAGTTTCTAGTCCCTTCCTAGA 57.371 36.000 0.00 0.00 39.24 2.43
3226 5405 8.595421 ACTAAAAAGTTTCTAGTCCCTTCCTAG 58.405 37.037 0.00 0.00 34.47 3.02
3227 5406 8.502047 ACTAAAAAGTTTCTAGTCCCTTCCTA 57.498 34.615 0.00 0.00 0.00 2.94
3228 5407 7.292827 AGACTAAAAAGTTTCTAGTCCCTTCCT 59.707 37.037 20.59 3.74 41.59 3.36
3229 5408 7.451732 AGACTAAAAAGTTTCTAGTCCCTTCC 58.548 38.462 20.59 1.54 41.59 3.46
3230 5409 8.369424 AGAGACTAAAAAGTTTCTAGTCCCTTC 58.631 37.037 20.59 13.94 41.59 3.46
3231 5410 8.151596 CAGAGACTAAAAAGTTTCTAGTCCCTT 58.848 37.037 20.59 7.13 41.59 3.95
3232 5411 7.256368 CCAGAGACTAAAAAGTTTCTAGTCCCT 60.256 40.741 20.59 14.23 41.59 4.20
3233 5412 6.874664 CCAGAGACTAAAAAGTTTCTAGTCCC 59.125 42.308 20.59 12.46 41.59 4.46
3234 5413 7.668492 TCCAGAGACTAAAAAGTTTCTAGTCC 58.332 38.462 20.59 14.05 41.59 3.85
3235 5414 9.543783 TTTCCAGAGACTAAAAAGTTTCTAGTC 57.456 33.333 17.79 17.79 41.17 2.59
3236 5415 9.327628 GTTTCCAGAGACTAAAAAGTTTCTAGT 57.672 33.333 1.12 1.12 32.44 2.57
3237 5416 9.326413 TGTTTCCAGAGACTAAAAAGTTTCTAG 57.674 33.333 0.00 0.00 32.44 2.43
3238 5417 9.675464 TTGTTTCCAGAGACTAAAAAGTTTCTA 57.325 29.630 0.00 0.00 32.44 2.10
3239 5418 8.575649 TTGTTTCCAGAGACTAAAAAGTTTCT 57.424 30.769 0.00 0.00 34.16 2.52
3240 5419 9.073368 GTTTGTTTCCAGAGACTAAAAAGTTTC 57.927 33.333 0.00 0.00 0.00 2.78
3241 5420 8.581578 TGTTTGTTTCCAGAGACTAAAAAGTTT 58.418 29.630 0.00 0.00 0.00 2.66
3242 5421 8.117813 TGTTTGTTTCCAGAGACTAAAAAGTT 57.882 30.769 0.00 0.00 0.00 2.66
3243 5422 7.696992 TGTTTGTTTCCAGAGACTAAAAAGT 57.303 32.000 0.00 0.00 0.00 2.66
3244 5423 7.702348 CCTTGTTTGTTTCCAGAGACTAAAAAG 59.298 37.037 7.84 7.84 30.60 2.27
3245 5424 7.394923 TCCTTGTTTGTTTCCAGAGACTAAAAA 59.605 33.333 0.00 0.00 0.00 1.94
3246 5425 6.887545 TCCTTGTTTGTTTCCAGAGACTAAAA 59.112 34.615 0.00 0.00 0.00 1.52
3247 5426 6.419791 TCCTTGTTTGTTTCCAGAGACTAAA 58.580 36.000 0.00 0.00 0.00 1.85
3248 5427 5.996644 TCCTTGTTTGTTTCCAGAGACTAA 58.003 37.500 0.00 0.00 0.00 2.24
3249 5428 5.365605 TCTCCTTGTTTGTTTCCAGAGACTA 59.634 40.000 0.00 0.00 0.00 2.59
3250 5429 4.164221 TCTCCTTGTTTGTTTCCAGAGACT 59.836 41.667 0.00 0.00 0.00 3.24
3251 5430 4.451900 TCTCCTTGTTTGTTTCCAGAGAC 58.548 43.478 0.00 0.00 0.00 3.36
3252 5431 4.408921 TCTCTCCTTGTTTGTTTCCAGAGA 59.591 41.667 0.00 0.00 34.20 3.10
3253 5432 4.513318 GTCTCTCCTTGTTTGTTTCCAGAG 59.487 45.833 0.00 0.00 0.00 3.35
3254 5433 4.164221 AGTCTCTCCTTGTTTGTTTCCAGA 59.836 41.667 0.00 0.00 0.00 3.86
3255 5434 4.455606 AGTCTCTCCTTGTTTGTTTCCAG 58.544 43.478 0.00 0.00 0.00 3.86
3256 5435 4.503714 AGTCTCTCCTTGTTTGTTTCCA 57.496 40.909 0.00 0.00 0.00 3.53
3257 5436 5.836821 AAAGTCTCTCCTTGTTTGTTTCC 57.163 39.130 0.00 0.00 0.00 3.13
3258 5437 7.915923 CCTAAAAAGTCTCTCCTTGTTTGTTTC 59.084 37.037 0.00 0.00 0.00 2.78
3259 5438 7.147897 CCCTAAAAAGTCTCTCCTTGTTTGTTT 60.148 37.037 0.00 0.00 0.00 2.83
3260 5439 6.321435 CCCTAAAAAGTCTCTCCTTGTTTGTT 59.679 38.462 0.00 0.00 0.00 2.83
3261 5440 5.828328 CCCTAAAAAGTCTCTCCTTGTTTGT 59.172 40.000 0.00 0.00 0.00 2.83
3262 5441 6.017026 GTCCCTAAAAAGTCTCTCCTTGTTTG 60.017 42.308 0.00 0.00 0.00 2.93
3263 5442 6.062749 GTCCCTAAAAAGTCTCTCCTTGTTT 58.937 40.000 0.00 0.00 0.00 2.83
3264 5443 5.369993 AGTCCCTAAAAAGTCTCTCCTTGTT 59.630 40.000 0.00 0.00 0.00 2.83
3265 5444 4.908481 AGTCCCTAAAAAGTCTCTCCTTGT 59.092 41.667 0.00 0.00 0.00 3.16
3266 5445 5.491323 AGTCCCTAAAAAGTCTCTCCTTG 57.509 43.478 0.00 0.00 0.00 3.61
3267 5446 8.345306 TCTATAGTCCCTAAAAAGTCTCTCCTT 58.655 37.037 0.00 0.00 0.00 3.36
3268 5447 7.781219 GTCTATAGTCCCTAAAAAGTCTCTCCT 59.219 40.741 0.00 0.00 0.00 3.69
3269 5448 7.781219 AGTCTATAGTCCCTAAAAAGTCTCTCC 59.219 40.741 0.00 0.00 0.00 3.71
3270 5449 8.756486 AGTCTATAGTCCCTAAAAAGTCTCTC 57.244 38.462 0.00 0.00 0.00 3.20
3271 5450 9.549984 AAAGTCTATAGTCCCTAAAAAGTCTCT 57.450 33.333 0.00 0.00 0.00 3.10
3280 5459 8.765517 CCCAACTAAAAAGTCTATAGTCCCTAA 58.234 37.037 0.00 0.00 0.00 2.69
3281 5460 8.124430 TCCCAACTAAAAAGTCTATAGTCCCTA 58.876 37.037 0.00 0.00 0.00 3.53
3282 5461 6.964086 TCCCAACTAAAAAGTCTATAGTCCCT 59.036 38.462 0.00 0.00 0.00 4.20
3283 5462 7.046652 GTCCCAACTAAAAAGTCTATAGTCCC 58.953 42.308 0.00 0.00 0.00 4.46
3284 5463 7.849160 AGTCCCAACTAAAAAGTCTATAGTCC 58.151 38.462 0.00 0.00 32.59 3.85
3286 5465 9.765295 TCTAGTCCCAACTAAAAAGTCTATAGT 57.235 33.333 0.00 0.00 37.53 2.12
3291 5470 9.121658 CTTTTTCTAGTCCCAACTAAAAAGTCT 57.878 33.333 13.30 0.00 41.21 3.24
3293 5472 8.818622 ACTTTTTCTAGTCCCAACTAAAAAGT 57.181 30.769 17.77 17.77 46.78 2.66
3317 5496 7.281100 CCCTGTTTGATTCATAAGTCTTAGGAC 59.719 40.741 6.47 0.00 42.41 3.85
3318 5497 7.338710 CCCTGTTTGATTCATAAGTCTTAGGA 58.661 38.462 2.85 2.85 0.00 2.94
3319 5498 6.038714 GCCCTGTTTGATTCATAAGTCTTAGG 59.961 42.308 0.00 0.00 0.00 2.69
3320 5499 6.038714 GGCCCTGTTTGATTCATAAGTCTTAG 59.961 42.308 0.00 0.00 0.00 2.18
3321 5500 5.885912 GGCCCTGTTTGATTCATAAGTCTTA 59.114 40.000 0.00 0.00 0.00 2.10
3322 5501 4.706962 GGCCCTGTTTGATTCATAAGTCTT 59.293 41.667 0.00 0.00 0.00 3.01
3323 5502 4.018050 AGGCCCTGTTTGATTCATAAGTCT 60.018 41.667 0.00 0.00 0.00 3.24
3324 5503 4.273318 AGGCCCTGTTTGATTCATAAGTC 58.727 43.478 0.00 0.00 0.00 3.01
3325 5504 4.322057 AGGCCCTGTTTGATTCATAAGT 57.678 40.909 0.00 0.00 0.00 2.24
3326 5505 6.773976 TTTAGGCCCTGTTTGATTCATAAG 57.226 37.500 0.00 0.00 0.00 1.73
3327 5506 6.667414 ACATTTAGGCCCTGTTTGATTCATAA 59.333 34.615 0.00 0.00 0.00 1.90
3328 5507 6.194235 ACATTTAGGCCCTGTTTGATTCATA 58.806 36.000 0.00 0.00 0.00 2.15
3329 5508 5.025453 ACATTTAGGCCCTGTTTGATTCAT 58.975 37.500 0.00 0.00 0.00 2.57
3330 5509 4.415596 ACATTTAGGCCCTGTTTGATTCA 58.584 39.130 0.00 0.00 0.00 2.57
3331 5510 6.524101 TTACATTTAGGCCCTGTTTGATTC 57.476 37.500 0.00 0.00 0.00 2.52
3332 5511 6.268847 TGTTTACATTTAGGCCCTGTTTGATT 59.731 34.615 0.00 0.00 0.00 2.57
3333 5512 5.777732 TGTTTACATTTAGGCCCTGTTTGAT 59.222 36.000 0.00 0.00 0.00 2.57
3334 5513 5.010213 GTGTTTACATTTAGGCCCTGTTTGA 59.990 40.000 0.00 0.00 0.00 2.69
3335 5514 5.010617 AGTGTTTACATTTAGGCCCTGTTTG 59.989 40.000 0.00 0.00 0.00 2.93
3336 5515 5.010617 CAGTGTTTACATTTAGGCCCTGTTT 59.989 40.000 0.00 0.00 0.00 2.83
3337 5516 4.522789 CAGTGTTTACATTTAGGCCCTGTT 59.477 41.667 0.00 0.00 0.00 3.16
3338 5517 4.079253 CAGTGTTTACATTTAGGCCCTGT 58.921 43.478 0.00 0.54 0.00 4.00
3339 5518 4.079253 ACAGTGTTTACATTTAGGCCCTG 58.921 43.478 0.00 0.00 0.00 4.45
3340 5519 4.382386 ACAGTGTTTACATTTAGGCCCT 57.618 40.909 0.00 0.00 0.00 5.19
3341 5520 8.459911 AATATACAGTGTTTACATTTAGGCCC 57.540 34.615 0.00 0.00 0.00 5.80
3353 5532 9.944663 CGCCAACATATTAAATATACAGTGTTT 57.055 29.630 0.00 0.00 0.00 2.83
3354 5533 9.116067 ACGCCAACATATTAAATATACAGTGTT 57.884 29.630 0.00 0.00 0.00 3.32
3366 5545 7.772332 AACAAAACAAACGCCAACATATTAA 57.228 28.000 0.00 0.00 0.00 1.40
3403 5582 3.894547 ATGTCCCCAACGACACGCC 62.895 63.158 0.00 0.00 45.19 5.68
3404 5583 1.908066 GAATGTCCCCAACGACACGC 61.908 60.000 0.00 0.00 45.19 5.34
3406 5585 0.320073 TCGAATGTCCCCAACGACAC 60.320 55.000 0.00 0.00 45.19 3.67
3407 5586 0.611200 ATCGAATGTCCCCAACGACA 59.389 50.000 0.00 0.00 46.36 4.35
3409 5588 5.477607 AATATATCGAATGTCCCCAACGA 57.522 39.130 0.00 0.00 37.66 3.85
3410 5589 6.370593 CAAAATATATCGAATGTCCCCAACG 58.629 40.000 0.00 0.00 0.00 4.10
3411 5590 6.677913 CCAAAATATATCGAATGTCCCCAAC 58.322 40.000 0.00 0.00 0.00 3.77
3412 5591 5.242838 GCCAAAATATATCGAATGTCCCCAA 59.757 40.000 0.00 0.00 0.00 4.12
3431 5610 7.759433 GCTAGTAGCAAGAAAATAAATGCCAAA 59.241 33.333 17.47 0.00 41.89 3.28
3446 5625 1.827969 AGACACCCAGCTAGTAGCAAG 59.172 52.381 23.77 15.02 45.56 4.01
3447 5626 1.550524 CAGACACCCAGCTAGTAGCAA 59.449 52.381 23.77 0.00 45.56 3.91
3448 5627 1.186200 CAGACACCCAGCTAGTAGCA 58.814 55.000 23.77 0.00 45.56 3.49
3449 5628 1.475403 TCAGACACCCAGCTAGTAGC 58.525 55.000 14.62 14.62 42.84 3.58
3450 5629 2.625790 GGATCAGACACCCAGCTAGTAG 59.374 54.545 0.00 0.00 0.00 2.57
3451 5630 2.024369 TGGATCAGACACCCAGCTAGTA 60.024 50.000 0.00 0.00 0.00 1.82
3452 5631 1.273267 TGGATCAGACACCCAGCTAGT 60.273 52.381 0.00 0.00 0.00 2.57
3453 5632 1.137872 GTGGATCAGACACCCAGCTAG 59.862 57.143 0.00 0.00 32.80 3.42
3454 5633 1.195115 GTGGATCAGACACCCAGCTA 58.805 55.000 0.00 0.00 32.80 3.32
3455 5634 0.546267 AGTGGATCAGACACCCAGCT 60.546 55.000 0.00 0.00 39.63 4.24
3456 5635 1.195115 TAGTGGATCAGACACCCAGC 58.805 55.000 0.00 0.00 39.63 4.85
3457 5636 3.198635 ACATTAGTGGATCAGACACCCAG 59.801 47.826 0.00 0.00 39.63 4.45
3458 5637 3.181329 ACATTAGTGGATCAGACACCCA 58.819 45.455 0.00 0.00 39.63 4.51
3459 5638 3.914426 ACATTAGTGGATCAGACACCC 57.086 47.619 0.00 0.00 39.63 4.61
3460 5639 7.171678 GCTTATTACATTAGTGGATCAGACACC 59.828 40.741 0.00 0.00 39.63 4.16
3461 5640 7.928706 AGCTTATTACATTAGTGGATCAGACAC 59.071 37.037 0.00 0.00 39.10 3.67
3462 5641 8.023021 AGCTTATTACATTAGTGGATCAGACA 57.977 34.615 0.00 0.00 0.00 3.41
3463 5642 7.600752 GGAGCTTATTACATTAGTGGATCAGAC 59.399 40.741 0.00 0.00 0.00 3.51
3464 5643 7.290014 TGGAGCTTATTACATTAGTGGATCAGA 59.710 37.037 0.00 0.00 0.00 3.27
3465 5644 7.445121 TGGAGCTTATTACATTAGTGGATCAG 58.555 38.462 0.00 0.00 0.00 2.90
3466 5645 7.373617 TGGAGCTTATTACATTAGTGGATCA 57.626 36.000 0.00 0.00 0.00 2.92
3467 5646 8.560374 GTTTGGAGCTTATTACATTAGTGGATC 58.440 37.037 0.00 0.00 0.00 3.36
3468 5647 8.052748 TGTTTGGAGCTTATTACATTAGTGGAT 58.947 33.333 0.00 0.00 0.00 3.41
3469 5648 7.398829 TGTTTGGAGCTTATTACATTAGTGGA 58.601 34.615 0.00 0.00 0.00 4.02
3470 5649 7.624360 TGTTTGGAGCTTATTACATTAGTGG 57.376 36.000 0.00 0.00 0.00 4.00
3471 5650 7.698130 GCTTGTTTGGAGCTTATTACATTAGTG 59.302 37.037 0.00 0.00 37.18 2.74
3472 5651 7.393234 TGCTTGTTTGGAGCTTATTACATTAGT 59.607 33.333 0.00 0.00 40.75 2.24
3473 5652 7.761409 TGCTTGTTTGGAGCTTATTACATTAG 58.239 34.615 0.00 0.00 40.75 1.73
3474 5653 7.695480 TGCTTGTTTGGAGCTTATTACATTA 57.305 32.000 0.00 0.00 40.75 1.90
3475 5654 6.588719 TGCTTGTTTGGAGCTTATTACATT 57.411 33.333 0.00 0.00 40.75 2.71
3476 5655 6.588719 TTGCTTGTTTGGAGCTTATTACAT 57.411 33.333 0.00 0.00 40.75 2.29
3477 5656 5.564651 GCTTGCTTGTTTGGAGCTTATTACA 60.565 40.000 0.00 0.00 40.75 2.41
3478 5657 4.859245 GCTTGCTTGTTTGGAGCTTATTAC 59.141 41.667 0.00 0.00 40.75 1.89
3479 5658 4.379394 CGCTTGCTTGTTTGGAGCTTATTA 60.379 41.667 0.00 0.00 40.75 0.98
3480 5659 3.612479 CGCTTGCTTGTTTGGAGCTTATT 60.612 43.478 0.00 0.00 40.75 1.40
3481 5660 2.095059 CGCTTGCTTGTTTGGAGCTTAT 60.095 45.455 0.00 0.00 40.75 1.73
3482 5661 1.266718 CGCTTGCTTGTTTGGAGCTTA 59.733 47.619 0.00 0.00 40.75 3.09
3492 5671 1.247567 ATTACAAGGCGCTTGCTTGT 58.752 45.000 26.31 26.31 44.43 3.16
3502 5681 6.143278 CGTTTTTCACCAGTAAATTACAAGGC 59.857 38.462 12.53 0.00 31.68 4.35
3513 5692 4.095185 CCACTTGTTCGTTTTTCACCAGTA 59.905 41.667 0.00 0.00 0.00 2.74
3515 5694 3.434637 CCACTTGTTCGTTTTTCACCAG 58.565 45.455 0.00 0.00 0.00 4.00
3526 5705 3.806316 AAGTATTTCGCCACTTGTTCG 57.194 42.857 0.00 0.00 33.78 3.95
3565 5744 9.053840 CACATAGCTTTCATGTCTGATAGAAAT 57.946 33.333 0.00 0.00 34.39 2.17
3571 5750 6.231258 TCTCACATAGCTTTCATGTCTGAT 57.769 37.500 0.00 0.00 34.39 2.90
3584 5763 8.600449 AATTAGTAGCATCTTTCTCACATAGC 57.400 34.615 0.00 0.00 0.00 2.97
3623 5802 4.704965 AGTAACTGTGAGGAAGTGGAAAC 58.295 43.478 0.00 0.00 0.00 2.78
3627 5806 4.543590 ATGAGTAACTGTGAGGAAGTGG 57.456 45.455 0.00 0.00 0.00 4.00
3653 5832 4.279671 TGGTTTGTTTCTATGTCCGCAATT 59.720 37.500 0.00 0.00 0.00 2.32
3659 5838 8.831715 ATGAAATTTGGTTTGTTTCTATGTCC 57.168 30.769 0.00 0.00 33.99 4.02
3695 5874 4.275936 ACCAGAAAATAGCATCCGCATTAC 59.724 41.667 0.00 0.00 42.27 1.89
3698 5877 2.620115 CACCAGAAAATAGCATCCGCAT 59.380 45.455 0.00 0.00 42.27 4.73
3699 5878 2.016318 CACCAGAAAATAGCATCCGCA 58.984 47.619 0.00 0.00 42.27 5.69
3701 5880 2.016318 TGCACCAGAAAATAGCATCCG 58.984 47.619 0.00 0.00 0.00 4.18
3709 5888 1.203052 CCTTCGCATGCACCAGAAAAT 59.797 47.619 19.57 0.00 0.00 1.82
3710 5889 0.597568 CCTTCGCATGCACCAGAAAA 59.402 50.000 19.57 0.00 0.00 2.29
3726 5905 4.590222 GGGCATCAAATATGATTCACCCTT 59.410 41.667 11.43 0.00 43.89 3.95
3737 5916 0.540365 CCCCTGCGGGCATCAAATAT 60.540 55.000 5.85 0.00 44.50 1.28
3748 5927 1.373590 CGTCCATTTAACCCCTGCGG 61.374 60.000 0.00 0.00 37.81 5.69
3749 5928 1.988834 GCGTCCATTTAACCCCTGCG 61.989 60.000 0.00 0.00 0.00 5.18
3750 5929 1.663379 GGCGTCCATTTAACCCCTGC 61.663 60.000 0.00 0.00 0.00 4.85
3751 5930 1.373590 CGGCGTCCATTTAACCCCTG 61.374 60.000 0.00 0.00 0.00 4.45
3752 5931 1.078001 CGGCGTCCATTTAACCCCT 60.078 57.895 0.00 0.00 0.00 4.79
3753 5932 3.504927 CGGCGTCCATTTAACCCC 58.495 61.111 0.00 0.00 0.00 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.