Multiple sequence alignment - TraesCS1A01G441500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G441500 chr1A 100.000 2736 0 0 1 2736 590248722 590251457 0.000000e+00 5053.0
1 TraesCS1A01G441500 chr1A 95.872 533 21 1 2204 2736 555513165 555513696 0.000000e+00 861.0
2 TraesCS1A01G441500 chr1A 84.538 899 74 28 924 1803 590560984 590560132 0.000000e+00 830.0
3 TraesCS1A01G441500 chr1A 88.750 160 17 1 669 828 538493881 538493723 7.730000e-46 195.0
4 TraesCS1A01G441500 chr1D 95.292 1232 25 9 833 2064 492136219 492137417 0.000000e+00 1923.0
5 TraesCS1A01G441500 chr1D 86.889 900 65 19 921 1803 492104082 492104945 0.000000e+00 959.0
6 TraesCS1A01G441500 chr1D 87.549 514 25 7 1 483 492132489 492132994 2.380000e-155 558.0
7 TraesCS1A01G441500 chr1D 93.694 111 7 0 472 582 492136005 492136115 1.690000e-37 167.0
8 TraesCS1A01G441500 chr1D 96.117 103 1 2 569 671 492136135 492136234 6.060000e-37 165.0
9 TraesCS1A01G441500 chr3A 99.067 536 5 0 2200 2735 697628676 697629211 0.000000e+00 963.0
10 TraesCS1A01G441500 chr7B 95.685 533 22 1 2204 2736 36967179 36967710 0.000000e+00 856.0
11 TraesCS1A01G441500 chr7B 88.889 162 16 2 669 828 714550135 714550296 5.980000e-47 198.0
12 TraesCS1A01G441500 chr5D 95.336 536 21 2 2204 2736 230025951 230025417 0.000000e+00 848.0
13 TraesCS1A01G441500 chr5D 84.980 253 28 9 53 301 438599482 438599236 5.850000e-62 248.0
14 TraesCS1A01G441500 chr5D 80.347 346 52 15 11 350 548866670 548866335 5.850000e-62 248.0
15 TraesCS1A01G441500 chr5D 93.168 161 11 0 669 829 56130232 56130072 1.270000e-58 237.0
16 TraesCS1A01G441500 chr5A 90.841 535 41 8 2207 2736 407873991 407873460 0.000000e+00 710.0
17 TraesCS1A01G441500 chr5A 83.774 265 30 12 36 298 41456725 41456472 3.520000e-59 239.0
18 TraesCS1A01G441500 chr2B 89.591 538 40 5 2204 2736 348077506 348076980 0.000000e+00 669.0
19 TraesCS1A01G441500 chr2B 93.038 158 11 0 669 826 249926543 249926700 5.890000e-57 231.0
20 TraesCS1A01G441500 chr2A 85.816 282 38 2 13 293 650621019 650621299 5.730000e-77 298.0
21 TraesCS1A01G441500 chr2A 83.032 277 36 8 82 350 650621206 650621479 9.790000e-60 241.0
22 TraesCS1A01G441500 chr2A 86.735 98 12 1 251 347 17818802 17818899 1.040000e-19 108.0
23 TraesCS1A01G441500 chr2A 83.505 97 12 4 251 347 609822934 609823026 1.350000e-13 87.9
24 TraesCS1A01G441500 chr7D 82.993 294 38 10 11 299 622183516 622183802 3.500000e-64 255.0
25 TraesCS1A01G441500 chr7A 83.214 280 39 8 15 291 735730414 735730688 1.630000e-62 250.0
26 TraesCS1A01G441500 chr6B 83.895 267 30 12 40 301 664895982 664896240 2.720000e-60 243.0
27 TraesCS1A01G441500 chr6B 94.268 157 9 0 669 825 89694574 89694730 9.790000e-60 241.0
28 TraesCS1A01G441500 chr5B 92.405 158 12 0 669 826 525803004 525802847 2.740000e-55 226.0
29 TraesCS1A01G441500 chr4B 89.241 158 17 0 669 826 671711552 671711395 5.980000e-47 198.0
30 TraesCS1A01G441500 chr4A 85.987 157 22 0 672 828 673210347 673210191 4.690000e-38 169.0
31 TraesCS1A01G441500 chrUn 85.350 157 23 0 672 828 292040714 292040558 2.180000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G441500 chr1A 590248722 590251457 2735 False 5053.00 5053 100.000 1 2736 1 chr1A.!!$F2 2735
1 TraesCS1A01G441500 chr1A 555513165 555513696 531 False 861.00 861 95.872 2204 2736 1 chr1A.!!$F1 532
2 TraesCS1A01G441500 chr1A 590560132 590560984 852 True 830.00 830 84.538 924 1803 1 chr1A.!!$R2 879
3 TraesCS1A01G441500 chr1D 492104082 492104945 863 False 959.00 959 86.889 921 1803 1 chr1D.!!$F1 882
4 TraesCS1A01G441500 chr1D 492132489 492137417 4928 False 703.25 1923 93.163 1 2064 4 chr1D.!!$F2 2063
5 TraesCS1A01G441500 chr3A 697628676 697629211 535 False 963.00 963 99.067 2200 2735 1 chr3A.!!$F1 535
6 TraesCS1A01G441500 chr7B 36967179 36967710 531 False 856.00 856 95.685 2204 2736 1 chr7B.!!$F1 532
7 TraesCS1A01G441500 chr5D 230025417 230025951 534 True 848.00 848 95.336 2204 2736 1 chr5D.!!$R2 532
8 TraesCS1A01G441500 chr5A 407873460 407873991 531 True 710.00 710 90.841 2207 2736 1 chr5A.!!$R2 529
9 TraesCS1A01G441500 chr2B 348076980 348077506 526 True 669.00 669 89.591 2204 2736 1 chr2B.!!$R1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
767 3854 0.183731 GGAATCCCCCATGACCAGAC 59.816 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2172 5298 0.035458 AGGAAAGAGGTTGTGCGAGG 59.965 55.0 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 8.818141 ATTCATCATTTCTTCAATGCATGATC 57.182 30.769 0.00 0.00 42.06 2.92
130 131 9.086336 ACACTTTGAAATACTTGTTCAACATTG 57.914 29.630 0.00 0.00 42.98 2.82
131 132 9.086336 CACTTTGAAATACTTGTTCAACATTGT 57.914 29.630 0.00 0.00 42.98 2.71
439 471 4.074526 GCTGTGGCCTCTCTCGCA 62.075 66.667 3.32 0.00 0.00 5.10
469 501 2.399611 CAATTCGCCGTCCGCTTC 59.600 61.111 0.00 0.00 36.73 3.86
471 503 2.100631 AATTCGCCGTCCGCTTCAG 61.101 57.895 0.00 0.00 36.73 3.02
491 3545 4.040645 AGCATTCCCTCGCTCTCA 57.959 55.556 0.00 0.00 31.16 3.27
504 3558 2.488153 TCGCTCTCACAGAAATCGAGAA 59.512 45.455 0.00 0.00 35.46 2.87
513 3567 7.122204 TCTCACAGAAATCGAGAAATAGGTGTA 59.878 37.037 0.00 0.00 32.96 2.90
548 3602 3.809832 CGTCAAATAGGATTCGGCTCAAT 59.190 43.478 0.00 0.00 0.00 2.57
590 3677 3.072622 AGACCTAACCAAGTGGACTTTCC 59.927 47.826 3.83 0.00 38.94 3.13
645 3732 2.969821 TAGCCAGGATCTCTCTCTCC 57.030 55.000 0.00 0.00 0.00 3.71
655 3742 6.209391 CAGGATCTCTCTCTCCCTCTTAATTC 59.791 46.154 0.00 0.00 31.49 2.17
656 3743 5.183140 GGATCTCTCTCTCCCTCTTAATTCG 59.817 48.000 0.00 0.00 0.00 3.34
657 3744 5.375283 TCTCTCTCTCCCTCTTAATTCGA 57.625 43.478 0.00 0.00 0.00 3.71
658 3745 5.947663 TCTCTCTCTCCCTCTTAATTCGAT 58.052 41.667 0.00 0.00 0.00 3.59
659 3746 6.001460 TCTCTCTCTCCCTCTTAATTCGATC 58.999 44.000 0.00 0.00 0.00 3.69
660 3747 5.947663 TCTCTCTCCCTCTTAATTCGATCT 58.052 41.667 0.00 0.00 0.00 2.75
661 3748 6.001460 TCTCTCTCCCTCTTAATTCGATCTC 58.999 44.000 0.00 0.00 0.00 2.75
662 3749 5.074115 TCTCTCCCTCTTAATTCGATCTCC 58.926 45.833 0.00 0.00 0.00 3.71
663 3750 5.068215 TCTCCCTCTTAATTCGATCTCCT 57.932 43.478 0.00 0.00 0.00 3.69
664 3751 5.459505 TCTCCCTCTTAATTCGATCTCCTT 58.540 41.667 0.00 0.00 0.00 3.36
665 3752 5.900123 TCTCCCTCTTAATTCGATCTCCTTT 59.100 40.000 0.00 0.00 0.00 3.11
666 3753 6.041069 TCTCCCTCTTAATTCGATCTCCTTTC 59.959 42.308 0.00 0.00 0.00 2.62
667 3754 5.661312 TCCCTCTTAATTCGATCTCCTTTCA 59.339 40.000 0.00 0.00 0.00 2.69
668 3755 6.156256 TCCCTCTTAATTCGATCTCCTTTCAA 59.844 38.462 0.00 0.00 0.00 2.69
669 3756 6.481644 CCCTCTTAATTCGATCTCCTTTCAAG 59.518 42.308 0.00 0.00 0.00 3.02
670 3757 7.268586 CCTCTTAATTCGATCTCCTTTCAAGA 58.731 38.462 0.00 0.00 0.00 3.02
671 3758 7.437862 CCTCTTAATTCGATCTCCTTTCAAGAG 59.562 40.741 0.00 0.00 36.58 2.85
672 3759 7.841956 TCTTAATTCGATCTCCTTTCAAGAGT 58.158 34.615 0.00 0.00 32.93 3.24
673 3760 8.967918 TCTTAATTCGATCTCCTTTCAAGAGTA 58.032 33.333 0.00 0.00 32.93 2.59
674 3761 9.243637 CTTAATTCGATCTCCTTTCAAGAGTAG 57.756 37.037 0.00 0.00 32.93 2.57
675 3762 7.411486 AATTCGATCTCCTTTCAAGAGTAGA 57.589 36.000 0.00 0.00 32.93 2.59
676 3763 6.835819 TTCGATCTCCTTTCAAGAGTAGAA 57.164 37.500 0.00 0.00 32.93 2.10
677 3764 6.835819 TCGATCTCCTTTCAAGAGTAGAAA 57.164 37.500 0.00 0.00 34.16 2.52
678 3765 6.622549 TCGATCTCCTTTCAAGAGTAGAAAC 58.377 40.000 0.00 0.00 32.09 2.78
679 3766 6.208797 TCGATCTCCTTTCAAGAGTAGAAACA 59.791 38.462 0.00 0.00 32.09 2.83
680 3767 6.868864 CGATCTCCTTTCAAGAGTAGAAACAA 59.131 38.462 0.00 0.00 32.09 2.83
681 3768 7.148722 CGATCTCCTTTCAAGAGTAGAAACAAC 60.149 40.741 0.00 0.00 32.09 3.32
682 3769 6.884832 TCTCCTTTCAAGAGTAGAAACAACA 58.115 36.000 0.00 0.00 32.09 3.33
683 3770 7.335627 TCTCCTTTCAAGAGTAGAAACAACAA 58.664 34.615 0.00 0.00 32.09 2.83
684 3771 7.280205 TCTCCTTTCAAGAGTAGAAACAACAAC 59.720 37.037 0.00 0.00 32.09 3.32
685 3772 7.110155 TCCTTTCAAGAGTAGAAACAACAACT 58.890 34.615 0.00 0.00 32.09 3.16
686 3773 7.610305 TCCTTTCAAGAGTAGAAACAACAACTT 59.390 33.333 0.00 0.00 32.09 2.66
687 3774 7.910683 CCTTTCAAGAGTAGAAACAACAACTTC 59.089 37.037 0.00 0.00 32.09 3.01
688 3775 6.583912 TCAAGAGTAGAAACAACAACTTCG 57.416 37.500 0.00 0.00 0.00 3.79
689 3776 6.334989 TCAAGAGTAGAAACAACAACTTCGA 58.665 36.000 0.00 0.00 0.00 3.71
690 3777 6.475727 TCAAGAGTAGAAACAACAACTTCGAG 59.524 38.462 0.00 0.00 0.00 4.04
691 3778 5.290386 AGAGTAGAAACAACAACTTCGAGG 58.710 41.667 0.00 0.00 0.00 4.63
692 3779 3.808174 AGTAGAAACAACAACTTCGAGGC 59.192 43.478 0.00 0.00 0.00 4.70
693 3780 2.919228 AGAAACAACAACTTCGAGGCT 58.081 42.857 0.00 0.00 0.00 4.58
694 3781 2.872858 AGAAACAACAACTTCGAGGCTC 59.127 45.455 3.87 3.87 0.00 4.70
695 3782 2.325583 AACAACAACTTCGAGGCTCA 57.674 45.000 15.95 0.00 0.00 4.26
696 3783 1.583054 ACAACAACTTCGAGGCTCAC 58.417 50.000 15.95 0.00 0.00 3.51
697 3784 1.134521 ACAACAACTTCGAGGCTCACA 60.135 47.619 15.95 0.00 0.00 3.58
698 3785 1.939934 CAACAACTTCGAGGCTCACAA 59.060 47.619 15.95 5.53 0.00 3.33
699 3786 2.549754 CAACAACTTCGAGGCTCACAAT 59.450 45.455 15.95 0.00 0.00 2.71
700 3787 2.417719 ACAACTTCGAGGCTCACAATC 58.582 47.619 15.95 0.00 0.00 2.67
701 3788 2.037772 ACAACTTCGAGGCTCACAATCT 59.962 45.455 15.95 0.00 0.00 2.40
702 3789 2.663826 ACTTCGAGGCTCACAATCTC 57.336 50.000 15.95 0.00 0.00 2.75
704 3791 0.458543 TTCGAGGCTCACAATCTCGC 60.459 55.000 15.95 0.00 46.72 5.03
705 3792 1.880340 CGAGGCTCACAATCTCGCC 60.880 63.158 15.95 0.00 42.70 5.54
706 3793 1.219124 GAGGCTCACAATCTCGCCA 59.781 57.895 10.25 0.00 44.85 5.69
707 3794 0.391661 GAGGCTCACAATCTCGCCAA 60.392 55.000 10.25 0.00 44.85 4.52
708 3795 0.392193 AGGCTCACAATCTCGCCAAG 60.392 55.000 0.00 0.00 44.85 3.61
709 3796 0.674895 GGCTCACAATCTCGCCAAGT 60.675 55.000 0.00 0.00 42.06 3.16
710 3797 1.160137 GCTCACAATCTCGCCAAGTT 58.840 50.000 0.00 0.00 0.00 2.66
711 3798 1.537202 GCTCACAATCTCGCCAAGTTT 59.463 47.619 0.00 0.00 0.00 2.66
712 3799 2.742053 GCTCACAATCTCGCCAAGTTTA 59.258 45.455 0.00 0.00 0.00 2.01
713 3800 3.424962 GCTCACAATCTCGCCAAGTTTAC 60.425 47.826 0.00 0.00 0.00 2.01
714 3801 3.997021 CTCACAATCTCGCCAAGTTTACT 59.003 43.478 0.00 0.00 0.00 2.24
715 3802 4.385825 TCACAATCTCGCCAAGTTTACTT 58.614 39.130 0.00 0.00 36.45 2.24
749 3836 8.307483 AGATGTAGATCGATATGTTTAGTTGGG 58.693 37.037 2.01 0.00 33.34 4.12
750 3837 7.591421 TGTAGATCGATATGTTTAGTTGGGA 57.409 36.000 2.01 0.00 0.00 4.37
751 3838 8.014070 TGTAGATCGATATGTTTAGTTGGGAA 57.986 34.615 2.01 0.00 0.00 3.97
752 3839 8.647796 TGTAGATCGATATGTTTAGTTGGGAAT 58.352 33.333 2.01 0.00 0.00 3.01
753 3840 9.141400 GTAGATCGATATGTTTAGTTGGGAATC 57.859 37.037 2.01 0.00 0.00 2.52
754 3841 7.162082 AGATCGATATGTTTAGTTGGGAATCC 58.838 38.462 0.00 0.00 0.00 3.01
755 3842 5.617252 TCGATATGTTTAGTTGGGAATCCC 58.383 41.667 12.39 12.39 45.71 3.85
766 3853 2.632831 GGAATCCCCCATGACCAGA 58.367 57.895 0.00 0.00 0.00 3.86
767 3854 0.183731 GGAATCCCCCATGACCAGAC 59.816 60.000 0.00 0.00 0.00 3.51
768 3855 0.183731 GAATCCCCCATGACCAGACC 59.816 60.000 0.00 0.00 0.00 3.85
769 3856 1.289244 AATCCCCCATGACCAGACCC 61.289 60.000 0.00 0.00 0.00 4.46
770 3857 3.797353 CCCCCATGACCAGACCCG 61.797 72.222 0.00 0.00 0.00 5.28
771 3858 3.009115 CCCCATGACCAGACCCGT 61.009 66.667 0.00 0.00 0.00 5.28
772 3859 2.268920 CCCATGACCAGACCCGTG 59.731 66.667 0.00 0.00 0.00 4.94
773 3860 2.592993 CCCATGACCAGACCCGTGT 61.593 63.158 0.00 0.00 0.00 4.49
774 3861 1.261938 CCCATGACCAGACCCGTGTA 61.262 60.000 0.00 0.00 0.00 2.90
775 3862 0.830648 CCATGACCAGACCCGTGTAT 59.169 55.000 0.00 0.00 0.00 2.29
776 3863 1.202533 CCATGACCAGACCCGTGTATC 60.203 57.143 0.00 0.00 0.00 2.24
777 3864 1.757118 CATGACCAGACCCGTGTATCT 59.243 52.381 0.00 0.00 0.00 1.98
778 3865 2.812836 TGACCAGACCCGTGTATCTA 57.187 50.000 0.00 0.00 0.00 1.98
779 3866 3.308035 TGACCAGACCCGTGTATCTAT 57.692 47.619 0.00 0.00 0.00 1.98
780 3867 2.956333 TGACCAGACCCGTGTATCTATG 59.044 50.000 0.00 0.00 0.00 2.23
781 3868 3.220110 GACCAGACCCGTGTATCTATGA 58.780 50.000 0.00 0.00 0.00 2.15
782 3869 3.635373 GACCAGACCCGTGTATCTATGAA 59.365 47.826 0.00 0.00 0.00 2.57
783 3870 3.383825 ACCAGACCCGTGTATCTATGAAC 59.616 47.826 0.00 0.00 0.00 3.18
784 3871 3.383505 CCAGACCCGTGTATCTATGAACA 59.616 47.826 0.00 0.00 0.00 3.18
785 3872 4.039245 CCAGACCCGTGTATCTATGAACAT 59.961 45.833 0.00 0.00 0.00 2.71
786 3873 5.453339 CCAGACCCGTGTATCTATGAACATT 60.453 44.000 0.00 0.00 0.00 2.71
787 3874 6.049149 CAGACCCGTGTATCTATGAACATTT 58.951 40.000 0.00 0.00 0.00 2.32
788 3875 6.201044 CAGACCCGTGTATCTATGAACATTTC 59.799 42.308 0.00 0.00 0.00 2.17
789 3876 6.098409 AGACCCGTGTATCTATGAACATTTCT 59.902 38.462 0.00 0.00 0.00 2.52
790 3877 7.287005 AGACCCGTGTATCTATGAACATTTCTA 59.713 37.037 0.00 0.00 0.00 2.10
791 3878 7.963532 ACCCGTGTATCTATGAACATTTCTAT 58.036 34.615 0.00 0.00 0.00 1.98
792 3879 8.088981 ACCCGTGTATCTATGAACATTTCTATC 58.911 37.037 0.00 0.00 0.00 2.08
793 3880 8.088365 CCCGTGTATCTATGAACATTTCTATCA 58.912 37.037 0.00 0.00 0.00 2.15
794 3881 9.645059 CCGTGTATCTATGAACATTTCTATCAT 57.355 33.333 0.00 0.00 37.54 2.45
808 3895 8.993121 ACATTTCTATCATCTAATAAAGTGGCG 58.007 33.333 0.00 0.00 0.00 5.69
809 3896 9.208022 CATTTCTATCATCTAATAAAGTGGCGA 57.792 33.333 0.00 0.00 0.00 5.54
810 3897 8.818141 TTTCTATCATCTAATAAAGTGGCGAG 57.182 34.615 0.00 0.00 0.00 5.03
811 3898 7.761038 TCTATCATCTAATAAAGTGGCGAGA 57.239 36.000 0.00 0.00 0.00 4.04
812 3899 8.354711 TCTATCATCTAATAAAGTGGCGAGAT 57.645 34.615 0.00 0.00 0.00 2.75
813 3900 8.807118 TCTATCATCTAATAAAGTGGCGAGATT 58.193 33.333 0.00 0.00 0.00 2.40
814 3901 9.429359 CTATCATCTAATAAAGTGGCGAGATTT 57.571 33.333 0.00 0.00 0.00 2.17
815 3902 7.715265 TCATCTAATAAAGTGGCGAGATTTC 57.285 36.000 0.00 0.00 0.00 2.17
816 3903 7.500992 TCATCTAATAAAGTGGCGAGATTTCT 58.499 34.615 0.00 0.00 0.00 2.52
817 3904 7.653713 TCATCTAATAAAGTGGCGAGATTTCTC 59.346 37.037 0.00 0.00 39.55 2.87
818 3905 6.873997 TCTAATAAAGTGGCGAGATTTCTCA 58.126 36.000 8.23 0.00 43.00 3.27
819 3906 7.327975 TCTAATAAAGTGGCGAGATTTCTCAA 58.672 34.615 8.23 0.00 43.00 3.02
820 3907 6.817765 AATAAAGTGGCGAGATTTCTCAAA 57.182 33.333 8.23 0.00 43.00 2.69
821 3908 6.817765 ATAAAGTGGCGAGATTTCTCAAAA 57.182 33.333 8.23 0.00 43.00 2.44
822 3909 5.514274 AAAGTGGCGAGATTTCTCAAAAA 57.486 34.783 8.23 0.00 43.00 1.94
867 3954 1.964373 CCAGGCCGCTACGTGTTTT 60.964 57.895 0.00 0.00 0.00 2.43
884 3971 3.714798 TGTTTTGTGGTAGAGGAGGACTT 59.285 43.478 0.00 0.00 0.00 3.01
898 3985 3.821600 GGAGGACTTGAAAGGAAAACCTC 59.178 47.826 0.00 0.00 41.01 3.85
899 3986 4.446455 GGAGGACTTGAAAGGAAAACCTCT 60.446 45.833 0.00 0.00 41.34 3.69
900 3987 4.720046 AGGACTTGAAAGGAAAACCTCTC 58.280 43.478 0.00 0.00 0.00 3.20
901 3988 4.166144 AGGACTTGAAAGGAAAACCTCTCA 59.834 41.667 0.00 0.00 0.00 3.27
902 3989 4.887655 GGACTTGAAAGGAAAACCTCTCAA 59.112 41.667 5.18 5.18 0.00 3.02
903 3990 5.359860 GGACTTGAAAGGAAAACCTCTCAAA 59.640 40.000 6.51 0.00 0.00 2.69
904 3991 6.208988 ACTTGAAAGGAAAACCTCTCAAAC 57.791 37.500 6.51 0.00 0.00 2.93
905 3992 5.714806 ACTTGAAAGGAAAACCTCTCAAACA 59.285 36.000 6.51 0.00 0.00 2.83
906 3993 6.210584 ACTTGAAAGGAAAACCTCTCAAACAA 59.789 34.615 6.51 0.00 0.00 2.83
907 3994 6.790232 TGAAAGGAAAACCTCTCAAACAAT 57.210 33.333 0.00 0.00 0.00 2.71
908 3995 7.889873 TGAAAGGAAAACCTCTCAAACAATA 57.110 32.000 0.00 0.00 0.00 1.90
909 3996 8.299990 TGAAAGGAAAACCTCTCAAACAATAA 57.700 30.769 0.00 0.00 0.00 1.40
910 3997 8.754080 TGAAAGGAAAACCTCTCAAACAATAAA 58.246 29.630 0.00 0.00 0.00 1.40
911 3998 9.594478 GAAAGGAAAACCTCTCAAACAATAAAA 57.406 29.630 0.00 0.00 0.00 1.52
912 3999 8.942338 AAGGAAAACCTCTCAAACAATAAAAC 57.058 30.769 0.00 0.00 0.00 2.43
913 4000 8.073467 AGGAAAACCTCTCAAACAATAAAACA 57.927 30.769 0.00 0.00 0.00 2.83
914 4001 8.704668 AGGAAAACCTCTCAAACAATAAAACAT 58.295 29.630 0.00 0.00 0.00 2.71
957 4044 1.837051 TCGTTGCAGACCAGACCCT 60.837 57.895 0.00 0.00 0.00 4.34
1218 4323 6.494893 TTTTGTGGTGGATCTTATTCTTCG 57.505 37.500 0.00 0.00 0.00 3.79
1290 4403 1.078143 GCTTGGCGGAGATGAAGGT 60.078 57.895 0.00 0.00 0.00 3.50
1438 4551 3.659786 TGATGTCTACTGGTTTGTTCGG 58.340 45.455 0.00 0.00 0.00 4.30
1529 4644 6.929606 GGTCGCTTGATTATTAACTAGGATGT 59.070 38.462 0.00 0.00 0.00 3.06
1535 4650 5.071250 TGATTATTAACTAGGATGTGGCGGT 59.929 40.000 0.00 0.00 0.00 5.68
1756 4882 3.196685 AGCTACCTAAACTCCTTCTGCAG 59.803 47.826 7.63 7.63 0.00 4.41
1813 4939 8.605325 ACTCCTCTTAGGTTTAGTTTGCTATA 57.395 34.615 0.00 0.00 36.53 1.31
1814 4940 9.214962 ACTCCTCTTAGGTTTAGTTTGCTATAT 57.785 33.333 0.00 0.00 36.53 0.86
1897 5023 7.873505 AGGTCTAGTTAGTTTGTTTCTCATGTC 59.126 37.037 0.00 0.00 0.00 3.06
2033 5159 3.992943 ATAATGTTTGGTCCCTCGACA 57.007 42.857 0.00 0.00 41.13 4.35
2064 5190 8.288689 ACTGTACAAAACCTCAACTAACAAAT 57.711 30.769 0.00 0.00 0.00 2.32
2065 5191 8.403236 ACTGTACAAAACCTCAACTAACAAATC 58.597 33.333 0.00 0.00 0.00 2.17
2066 5192 7.411274 TGTACAAAACCTCAACTAACAAATCG 58.589 34.615 0.00 0.00 0.00 3.34
2067 5193 5.827666 ACAAAACCTCAACTAACAAATCGG 58.172 37.500 0.00 0.00 0.00 4.18
2068 5194 5.358725 ACAAAACCTCAACTAACAAATCGGT 59.641 36.000 0.00 0.00 0.00 4.69
2069 5195 6.127563 ACAAAACCTCAACTAACAAATCGGTT 60.128 34.615 0.00 0.00 35.20 4.44
2070 5196 7.067251 ACAAAACCTCAACTAACAAATCGGTTA 59.933 33.333 0.00 0.00 33.51 2.85
2071 5197 6.549912 AACCTCAACTAACAAATCGGTTAC 57.450 37.500 0.00 0.00 32.21 2.50
2072 5198 5.861727 ACCTCAACTAACAAATCGGTTACT 58.138 37.500 0.00 0.00 32.29 2.24
2073 5199 6.293698 ACCTCAACTAACAAATCGGTTACTT 58.706 36.000 0.00 0.00 32.29 2.24
2074 5200 6.769341 ACCTCAACTAACAAATCGGTTACTTT 59.231 34.615 0.00 0.00 32.29 2.66
2075 5201 7.283807 ACCTCAACTAACAAATCGGTTACTTTT 59.716 33.333 0.00 0.00 32.29 2.27
2076 5202 7.589954 CCTCAACTAACAAATCGGTTACTTTTG 59.410 37.037 0.00 0.00 36.62 2.44
2077 5203 7.419204 TCAACTAACAAATCGGTTACTTTTGG 58.581 34.615 9.39 0.00 35.23 3.28
2078 5204 6.947644 ACTAACAAATCGGTTACTTTTGGT 57.052 33.333 9.39 6.42 35.23 3.67
2079 5205 7.337480 ACTAACAAATCGGTTACTTTTGGTT 57.663 32.000 9.39 0.00 35.23 3.67
2080 5206 7.197703 ACTAACAAATCGGTTACTTTTGGTTG 58.802 34.615 9.39 7.12 35.23 3.77
2081 5207 4.939271 ACAAATCGGTTACTTTTGGTTGG 58.061 39.130 9.39 0.00 35.23 3.77
2082 5208 4.202172 ACAAATCGGTTACTTTTGGTTGGG 60.202 41.667 9.39 0.00 35.23 4.12
2083 5209 2.732844 TCGGTTACTTTTGGTTGGGT 57.267 45.000 0.00 0.00 0.00 4.51
2084 5210 2.299521 TCGGTTACTTTTGGTTGGGTG 58.700 47.619 0.00 0.00 0.00 4.61
2085 5211 2.092538 TCGGTTACTTTTGGTTGGGTGA 60.093 45.455 0.00 0.00 0.00 4.02
2086 5212 2.888414 CGGTTACTTTTGGTTGGGTGAT 59.112 45.455 0.00 0.00 0.00 3.06
2087 5213 3.057806 CGGTTACTTTTGGTTGGGTGATC 60.058 47.826 0.00 0.00 0.00 2.92
2088 5214 3.057806 GGTTACTTTTGGTTGGGTGATCG 60.058 47.826 0.00 0.00 0.00 3.69
2089 5215 2.649531 ACTTTTGGTTGGGTGATCGA 57.350 45.000 0.00 0.00 0.00 3.59
2090 5216 2.938838 ACTTTTGGTTGGGTGATCGAA 58.061 42.857 0.00 0.00 0.00 3.71
2091 5217 2.884639 ACTTTTGGTTGGGTGATCGAAG 59.115 45.455 0.00 0.00 0.00 3.79
2092 5218 2.649531 TTTGGTTGGGTGATCGAAGT 57.350 45.000 0.00 0.00 0.00 3.01
2093 5219 2.178912 TTGGTTGGGTGATCGAAGTC 57.821 50.000 0.00 0.00 0.00 3.01
2094 5220 1.348064 TGGTTGGGTGATCGAAGTCT 58.652 50.000 0.00 0.00 0.00 3.24
2095 5221 1.001974 TGGTTGGGTGATCGAAGTCTG 59.998 52.381 0.00 0.00 0.00 3.51
2096 5222 1.275291 GGTTGGGTGATCGAAGTCTGA 59.725 52.381 0.00 0.00 0.00 3.27
2097 5223 2.611518 GTTGGGTGATCGAAGTCTGAG 58.388 52.381 0.00 0.00 0.00 3.35
2098 5224 1.186200 TGGGTGATCGAAGTCTGAGG 58.814 55.000 0.00 0.00 0.00 3.86
2099 5225 0.461961 GGGTGATCGAAGTCTGAGGG 59.538 60.000 0.00 0.00 0.00 4.30
2100 5226 1.187087 GGTGATCGAAGTCTGAGGGT 58.813 55.000 0.00 0.00 0.00 4.34
2101 5227 1.550976 GGTGATCGAAGTCTGAGGGTT 59.449 52.381 0.00 0.00 0.00 4.11
2102 5228 2.611518 GTGATCGAAGTCTGAGGGTTG 58.388 52.381 0.00 0.00 0.00 3.77
2103 5229 2.231478 GTGATCGAAGTCTGAGGGTTGA 59.769 50.000 0.00 0.00 0.00 3.18
2104 5230 2.493675 TGATCGAAGTCTGAGGGTTGAG 59.506 50.000 0.00 0.00 0.00 3.02
2105 5231 0.603569 TCGAAGTCTGAGGGTTGAGC 59.396 55.000 0.00 0.00 0.00 4.26
2106 5232 0.734253 CGAAGTCTGAGGGTTGAGCG 60.734 60.000 0.00 0.00 0.00 5.03
2107 5233 0.603569 GAAGTCTGAGGGTTGAGCGA 59.396 55.000 0.00 0.00 0.00 4.93
2108 5234 1.205893 GAAGTCTGAGGGTTGAGCGAT 59.794 52.381 0.00 0.00 0.00 4.58
2109 5235 0.820871 AGTCTGAGGGTTGAGCGATC 59.179 55.000 0.00 0.00 0.00 3.69
2110 5236 0.532573 GTCTGAGGGTTGAGCGATCA 59.467 55.000 0.00 0.00 0.00 2.92
2111 5237 0.532573 TCTGAGGGTTGAGCGATCAC 59.467 55.000 1.08 0.00 0.00 3.06
2112 5238 0.534412 CTGAGGGTTGAGCGATCACT 59.466 55.000 1.08 0.00 0.00 3.41
2113 5239 0.976641 TGAGGGTTGAGCGATCACTT 59.023 50.000 1.08 0.00 0.00 3.16
2114 5240 2.166459 CTGAGGGTTGAGCGATCACTTA 59.834 50.000 1.08 0.00 0.00 2.24
2115 5241 2.094182 TGAGGGTTGAGCGATCACTTAC 60.094 50.000 1.08 0.00 0.00 2.34
2116 5242 1.899814 AGGGTTGAGCGATCACTTACA 59.100 47.619 1.08 0.00 0.00 2.41
2117 5243 2.301870 AGGGTTGAGCGATCACTTACAA 59.698 45.455 1.08 0.00 0.00 2.41
2118 5244 3.071479 GGGTTGAGCGATCACTTACAAA 58.929 45.455 1.08 0.00 0.00 2.83
2119 5245 3.120304 GGGTTGAGCGATCACTTACAAAC 60.120 47.826 1.08 0.00 0.00 2.93
2120 5246 3.120304 GGTTGAGCGATCACTTACAAACC 60.120 47.826 1.08 2.24 0.00 3.27
2121 5247 3.394674 TGAGCGATCACTTACAAACCA 57.605 42.857 0.00 0.00 0.00 3.67
2122 5248 3.064207 TGAGCGATCACTTACAAACCAC 58.936 45.455 0.00 0.00 0.00 4.16
2123 5249 3.244078 TGAGCGATCACTTACAAACCACT 60.244 43.478 0.00 0.00 0.00 4.00
2124 5250 3.326747 AGCGATCACTTACAAACCACTC 58.673 45.455 0.00 0.00 0.00 3.51
2125 5251 2.415512 GCGATCACTTACAAACCACTCC 59.584 50.000 0.00 0.00 0.00 3.85
2126 5252 3.659786 CGATCACTTACAAACCACTCCA 58.340 45.455 0.00 0.00 0.00 3.86
2127 5253 3.679980 CGATCACTTACAAACCACTCCAG 59.320 47.826 0.00 0.00 0.00 3.86
2128 5254 2.846193 TCACTTACAAACCACTCCAGC 58.154 47.619 0.00 0.00 0.00 4.85
2129 5255 1.531149 CACTTACAAACCACTCCAGCG 59.469 52.381 0.00 0.00 0.00 5.18
2130 5256 1.140252 ACTTACAAACCACTCCAGCGT 59.860 47.619 0.00 0.00 0.00 5.07
2131 5257 1.531149 CTTACAAACCACTCCAGCGTG 59.469 52.381 0.00 0.00 34.71 5.34
2132 5258 0.753867 TACAAACCACTCCAGCGTGA 59.246 50.000 0.00 0.00 37.06 4.35
2133 5259 0.532862 ACAAACCACTCCAGCGTGAG 60.533 55.000 4.24 4.24 37.06 3.51
2134 5260 1.071471 AAACCACTCCAGCGTGAGG 59.929 57.895 9.83 0.00 37.06 3.86
2135 5261 1.696097 AAACCACTCCAGCGTGAGGT 61.696 55.000 9.83 0.00 46.81 3.85
2136 5262 2.100879 AACCACTCCAGCGTGAGGTC 62.101 60.000 9.83 0.00 41.81 3.85
2137 5263 2.262915 CACTCCAGCGTGAGGTCC 59.737 66.667 9.83 0.00 41.81 4.46
2138 5264 2.118513 ACTCCAGCGTGAGGTCCT 59.881 61.111 9.83 0.00 41.81 3.85
2139 5265 1.534235 ACTCCAGCGTGAGGTCCTT 60.534 57.895 9.83 0.00 41.81 3.36
2140 5266 0.251653 ACTCCAGCGTGAGGTCCTTA 60.252 55.000 9.83 0.00 41.81 2.69
2141 5267 0.895530 CTCCAGCGTGAGGTCCTTAA 59.104 55.000 0.00 0.00 41.81 1.85
2142 5268 1.275291 CTCCAGCGTGAGGTCCTTAAA 59.725 52.381 0.00 0.00 41.81 1.52
2143 5269 1.695242 TCCAGCGTGAGGTCCTTAAAA 59.305 47.619 0.00 0.00 41.81 1.52
2144 5270 1.804748 CCAGCGTGAGGTCCTTAAAAC 59.195 52.381 0.00 0.00 41.81 2.43
2145 5271 1.804748 CAGCGTGAGGTCCTTAAAACC 59.195 52.381 0.00 0.00 41.81 3.27
2146 5272 1.162698 GCGTGAGGTCCTTAAAACCC 58.837 55.000 0.00 0.00 37.52 4.11
2147 5273 1.271217 GCGTGAGGTCCTTAAAACCCT 60.271 52.381 0.00 0.00 37.52 4.34
2148 5274 2.027837 GCGTGAGGTCCTTAAAACCCTA 60.028 50.000 0.00 0.00 37.52 3.53
2149 5275 3.593096 CGTGAGGTCCTTAAAACCCTAC 58.407 50.000 0.00 3.22 37.52 3.18
2150 5276 3.007182 CGTGAGGTCCTTAAAACCCTACA 59.993 47.826 0.00 0.91 37.52 2.74
2151 5277 4.323257 CGTGAGGTCCTTAAAACCCTACAT 60.323 45.833 0.00 0.00 37.52 2.29
2152 5278 5.183969 GTGAGGTCCTTAAAACCCTACATC 58.816 45.833 0.00 0.00 37.52 3.06
2153 5279 5.045797 GTGAGGTCCTTAAAACCCTACATCT 60.046 44.000 0.00 0.00 37.52 2.90
2154 5280 6.155737 GTGAGGTCCTTAAAACCCTACATCTA 59.844 42.308 0.00 0.00 37.52 1.98
2155 5281 6.383147 TGAGGTCCTTAAAACCCTACATCTAG 59.617 42.308 0.00 0.00 37.52 2.43
2156 5282 5.666265 AGGTCCTTAAAACCCTACATCTAGG 59.334 44.000 3.60 0.00 39.67 3.02
2157 5283 5.427806 GGTCCTTAAAACCCTACATCTAGGT 59.572 44.000 0.00 0.00 38.39 3.08
2158 5284 6.346896 GTCCTTAAAACCCTACATCTAGGTG 58.653 44.000 0.04 0.04 38.39 4.00
2159 5285 6.027482 TCCTTAAAACCCTACATCTAGGTGT 58.973 40.000 14.29 14.29 38.39 4.16
2160 5286 6.502863 TCCTTAAAACCCTACATCTAGGTGTT 59.497 38.462 15.17 0.00 38.39 3.32
2161 5287 6.822170 CCTTAAAACCCTACATCTAGGTGTTC 59.178 42.308 15.17 0.00 38.39 3.18
2162 5288 4.838904 AAACCCTACATCTAGGTGTTCC 57.161 45.455 15.17 0.00 38.39 3.62
2163 5289 2.760581 ACCCTACATCTAGGTGTTCCC 58.239 52.381 15.17 0.00 38.39 3.97
2164 5290 1.687123 CCCTACATCTAGGTGTTCCCG 59.313 57.143 15.17 0.99 38.39 5.14
2165 5291 1.068741 CCTACATCTAGGTGTTCCCGC 59.931 57.143 15.17 0.00 35.57 6.13
2166 5292 2.032620 CTACATCTAGGTGTTCCCGCT 58.967 52.381 15.17 0.00 38.74 5.52
2167 5293 0.824759 ACATCTAGGTGTTCCCGCTC 59.175 55.000 1.73 0.00 38.74 5.03
2168 5294 0.105039 CATCTAGGTGTTCCCGCTCC 59.895 60.000 0.00 0.00 38.74 4.70
2169 5295 1.049289 ATCTAGGTGTTCCCGCTCCC 61.049 60.000 0.00 0.00 38.74 4.30
2170 5296 1.987855 CTAGGTGTTCCCGCTCCCA 60.988 63.158 0.00 0.00 38.74 4.37
2171 5297 2.240162 CTAGGTGTTCCCGCTCCCAC 62.240 65.000 0.00 0.00 38.74 4.61
2172 5298 4.717313 GGTGTTCCCGCTCCCACC 62.717 72.222 0.00 0.00 40.47 4.61
2173 5299 4.717313 GTGTTCCCGCTCCCACCC 62.717 72.222 0.00 0.00 0.00 4.61
2174 5300 4.974438 TGTTCCCGCTCCCACCCT 62.974 66.667 0.00 0.00 0.00 4.34
2175 5301 4.097361 GTTCCCGCTCCCACCCTC 62.097 72.222 0.00 0.00 0.00 4.30
2181 5307 4.329545 GCTCCCACCCTCGCACAA 62.330 66.667 0.00 0.00 0.00 3.33
2182 5308 2.358737 CTCCCACCCTCGCACAAC 60.359 66.667 0.00 0.00 0.00 3.32
2183 5309 3.901797 CTCCCACCCTCGCACAACC 62.902 68.421 0.00 0.00 0.00 3.77
2184 5310 3.953775 CCCACCCTCGCACAACCT 61.954 66.667 0.00 0.00 0.00 3.50
2185 5311 2.358737 CCACCCTCGCACAACCTC 60.359 66.667 0.00 0.00 0.00 3.85
2186 5312 2.743718 CACCCTCGCACAACCTCT 59.256 61.111 0.00 0.00 0.00 3.69
2187 5313 1.071471 CACCCTCGCACAACCTCTT 59.929 57.895 0.00 0.00 0.00 2.85
2188 5314 0.535102 CACCCTCGCACAACCTCTTT 60.535 55.000 0.00 0.00 0.00 2.52
2189 5315 0.250338 ACCCTCGCACAACCTCTTTC 60.250 55.000 0.00 0.00 0.00 2.62
2190 5316 0.955919 CCCTCGCACAACCTCTTTCC 60.956 60.000 0.00 0.00 0.00 3.13
2191 5317 0.035458 CCTCGCACAACCTCTTTCCT 59.965 55.000 0.00 0.00 0.00 3.36
2192 5318 1.433534 CTCGCACAACCTCTTTCCTC 58.566 55.000 0.00 0.00 0.00 3.71
2193 5319 1.001406 CTCGCACAACCTCTTTCCTCT 59.999 52.381 0.00 0.00 0.00 3.69
2194 5320 1.416401 TCGCACAACCTCTTTCCTCTT 59.584 47.619 0.00 0.00 0.00 2.85
2195 5321 1.532868 CGCACAACCTCTTTCCTCTTG 59.467 52.381 0.00 0.00 0.00 3.02
2196 5322 1.268079 GCACAACCTCTTTCCTCTTGC 59.732 52.381 0.00 0.00 0.00 4.01
2197 5323 2.575532 CACAACCTCTTTCCTCTTGCA 58.424 47.619 0.00 0.00 0.00 4.08
2198 5324 2.951642 CACAACCTCTTTCCTCTTGCAA 59.048 45.455 0.00 0.00 0.00 4.08
2355 5485 0.454196 GCTGTTTGGTTGTCCGTTGT 59.546 50.000 0.00 0.00 36.30 3.32
2356 5486 1.671845 GCTGTTTGGTTGTCCGTTGTA 59.328 47.619 0.00 0.00 36.30 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.409312 TGTTAAATGTGCATAGAAAGAATGTTG 57.591 29.630 0.00 0.00 0.00 3.33
224 233 9.313118 ACAAATCCTGAACAAGTATTTGAAAAC 57.687 29.630 4.81 0.00 38.99 2.43
228 237 9.883142 AAAAACAAATCCTGAACAAGTATTTGA 57.117 25.926 4.81 0.00 38.99 2.69
390 422 7.880160 TCCTCTTCTTTTTCATGTTTTCTGA 57.120 32.000 0.00 0.00 0.00 3.27
391 423 8.931385 TTTCCTCTTCTTTTTCATGTTTTCTG 57.069 30.769 0.00 0.00 0.00 3.02
394 426 9.889128 TCATTTTCCTCTTCTTTTTCATGTTTT 57.111 25.926 0.00 0.00 0.00 2.43
395 427 9.538508 CTCATTTTCCTCTTCTTTTTCATGTTT 57.461 29.630 0.00 0.00 0.00 2.83
396 428 8.146412 CCTCATTTTCCTCTTCTTTTTCATGTT 58.854 33.333 0.00 0.00 0.00 2.71
397 429 7.664758 CCTCATTTTCCTCTTCTTTTTCATGT 58.335 34.615 0.00 0.00 0.00 3.21
398 430 6.589139 GCCTCATTTTCCTCTTCTTTTTCATG 59.411 38.462 0.00 0.00 0.00 3.07
399 431 6.496218 AGCCTCATTTTCCTCTTCTTTTTCAT 59.504 34.615 0.00 0.00 0.00 2.57
400 432 5.835280 AGCCTCATTTTCCTCTTCTTTTTCA 59.165 36.000 0.00 0.00 0.00 2.69
401 433 6.155136 CAGCCTCATTTTCCTCTTCTTTTTC 58.845 40.000 0.00 0.00 0.00 2.29
465 497 1.435408 GAGGGAATGCTCGCTGAAGC 61.435 60.000 0.00 0.00 44.43 3.86
488 3542 6.102663 ACACCTATTTCTCGATTTCTGTGAG 58.897 40.000 0.00 0.00 0.00 3.51
491 3545 6.338937 GGTACACCTATTTCTCGATTTCTGT 58.661 40.000 0.00 0.00 0.00 3.41
513 3567 0.109723 TTTGACGCCTTAAGCAGGGT 59.890 50.000 0.00 0.00 44.16 4.34
517 3571 3.620427 TCCTATTTGACGCCTTAAGCA 57.380 42.857 0.00 0.00 44.04 3.91
548 3602 1.112113 GGACCATGAAGCCTACTCGA 58.888 55.000 0.00 0.00 0.00 4.04
590 3677 0.396695 ATCAGCCCAAGCCCAATCTG 60.397 55.000 0.00 0.00 41.25 2.90
638 3725 5.183140 GGAGATCGAATTAAGAGGGAGAGAG 59.817 48.000 0.00 0.00 0.00 3.20
639 3726 5.074115 GGAGATCGAATTAAGAGGGAGAGA 58.926 45.833 0.00 0.00 0.00 3.10
640 3727 5.076873 AGGAGATCGAATTAAGAGGGAGAG 58.923 45.833 0.00 0.00 0.00 3.20
645 3732 7.268586 TCTTGAAAGGAGATCGAATTAAGAGG 58.731 38.462 0.00 0.00 0.00 3.69
655 3742 6.390721 TGTTTCTACTCTTGAAAGGAGATCG 58.609 40.000 0.00 0.00 34.58 3.69
656 3743 7.657761 TGTTGTTTCTACTCTTGAAAGGAGATC 59.342 37.037 0.00 0.00 34.58 2.75
657 3744 7.509546 TGTTGTTTCTACTCTTGAAAGGAGAT 58.490 34.615 0.00 0.00 34.58 2.75
658 3745 6.884832 TGTTGTTTCTACTCTTGAAAGGAGA 58.115 36.000 0.00 0.00 34.58 3.71
659 3746 7.281100 AGTTGTTGTTTCTACTCTTGAAAGGAG 59.719 37.037 0.00 0.00 34.58 3.69
660 3747 7.110155 AGTTGTTGTTTCTACTCTTGAAAGGA 58.890 34.615 0.00 0.00 34.58 3.36
661 3748 7.321745 AGTTGTTGTTTCTACTCTTGAAAGG 57.678 36.000 0.00 0.00 34.58 3.11
662 3749 7.636359 CGAAGTTGTTGTTTCTACTCTTGAAAG 59.364 37.037 0.00 0.00 34.58 2.62
663 3750 7.332430 TCGAAGTTGTTGTTTCTACTCTTGAAA 59.668 33.333 0.00 0.00 0.00 2.69
664 3751 6.814644 TCGAAGTTGTTGTTTCTACTCTTGAA 59.185 34.615 0.00 0.00 0.00 2.69
665 3752 6.334989 TCGAAGTTGTTGTTTCTACTCTTGA 58.665 36.000 0.00 0.00 0.00 3.02
666 3753 6.292381 CCTCGAAGTTGTTGTTTCTACTCTTG 60.292 42.308 0.00 0.00 0.00 3.02
667 3754 5.753921 CCTCGAAGTTGTTGTTTCTACTCTT 59.246 40.000 0.00 0.00 0.00 2.85
668 3755 5.290386 CCTCGAAGTTGTTGTTTCTACTCT 58.710 41.667 0.00 0.00 0.00 3.24
669 3756 4.084485 GCCTCGAAGTTGTTGTTTCTACTC 60.084 45.833 0.00 0.00 0.00 2.59
670 3757 3.808174 GCCTCGAAGTTGTTGTTTCTACT 59.192 43.478 0.00 0.00 0.00 2.57
671 3758 3.808174 AGCCTCGAAGTTGTTGTTTCTAC 59.192 43.478 0.00 0.00 0.00 2.59
672 3759 4.056050 GAGCCTCGAAGTTGTTGTTTCTA 58.944 43.478 0.00 0.00 0.00 2.10
673 3760 2.872858 GAGCCTCGAAGTTGTTGTTTCT 59.127 45.455 0.00 0.00 0.00 2.52
674 3761 2.612212 TGAGCCTCGAAGTTGTTGTTTC 59.388 45.455 0.00 0.00 0.00 2.78
675 3762 2.354821 GTGAGCCTCGAAGTTGTTGTTT 59.645 45.455 0.00 0.00 0.00 2.83
676 3763 1.940613 GTGAGCCTCGAAGTTGTTGTT 59.059 47.619 0.00 0.00 0.00 2.83
677 3764 1.134521 TGTGAGCCTCGAAGTTGTTGT 60.135 47.619 0.00 0.00 0.00 3.32
678 3765 1.581934 TGTGAGCCTCGAAGTTGTTG 58.418 50.000 0.00 0.00 0.00 3.33
679 3766 2.325583 TTGTGAGCCTCGAAGTTGTT 57.674 45.000 0.00 0.00 0.00 2.83
680 3767 2.037772 AGATTGTGAGCCTCGAAGTTGT 59.962 45.455 0.00 0.00 0.00 3.32
681 3768 2.670414 GAGATTGTGAGCCTCGAAGTTG 59.330 50.000 0.00 0.00 0.00 3.16
682 3769 2.966050 GAGATTGTGAGCCTCGAAGTT 58.034 47.619 0.00 0.00 0.00 2.66
683 3770 2.663826 GAGATTGTGAGCCTCGAAGT 57.336 50.000 0.00 0.00 0.00 3.01
688 3775 4.116878 GGCGAGATTGTGAGCCTC 57.883 61.111 0.00 0.00 45.67 4.70
691 3778 1.160137 AACTTGGCGAGATTGTGAGC 58.840 50.000 9.20 0.00 0.00 4.26
692 3779 3.997021 AGTAAACTTGGCGAGATTGTGAG 59.003 43.478 9.20 0.00 0.00 3.51
693 3780 4.002906 AGTAAACTTGGCGAGATTGTGA 57.997 40.909 9.20 0.00 0.00 3.58
694 3781 4.749245 AAGTAAACTTGGCGAGATTGTG 57.251 40.909 9.20 0.00 34.38 3.33
723 3810 8.307483 CCCAACTAAACATATCGATCTACATCT 58.693 37.037 0.00 0.00 0.00 2.90
724 3811 8.304596 TCCCAACTAAACATATCGATCTACATC 58.695 37.037 0.00 0.00 0.00 3.06
725 3812 8.190326 TCCCAACTAAACATATCGATCTACAT 57.810 34.615 0.00 0.00 0.00 2.29
726 3813 7.591421 TCCCAACTAAACATATCGATCTACA 57.409 36.000 0.00 0.00 0.00 2.74
727 3814 9.141400 GATTCCCAACTAAACATATCGATCTAC 57.859 37.037 0.00 0.00 0.00 2.59
728 3815 8.311836 GGATTCCCAACTAAACATATCGATCTA 58.688 37.037 0.00 0.00 0.00 1.98
729 3816 7.162082 GGATTCCCAACTAAACATATCGATCT 58.838 38.462 0.00 0.00 0.00 2.75
730 3817 6.371825 GGGATTCCCAACTAAACATATCGATC 59.628 42.308 17.36 0.00 44.65 3.69
731 3818 6.238648 GGGATTCCCAACTAAACATATCGAT 58.761 40.000 17.36 2.16 44.65 3.59
732 3819 5.617252 GGGATTCCCAACTAAACATATCGA 58.383 41.667 17.36 0.00 44.65 3.59
733 3820 5.941948 GGGATTCCCAACTAAACATATCG 57.058 43.478 17.36 0.00 44.65 2.92
748 3835 0.183731 GTCTGGTCATGGGGGATTCC 59.816 60.000 0.00 0.00 0.00 3.01
749 3836 0.183731 GGTCTGGTCATGGGGGATTC 59.816 60.000 0.00 0.00 0.00 2.52
750 3837 1.289244 GGGTCTGGTCATGGGGGATT 61.289 60.000 0.00 0.00 0.00 3.01
751 3838 1.697754 GGGTCTGGTCATGGGGGAT 60.698 63.158 0.00 0.00 0.00 3.85
752 3839 2.286121 GGGTCTGGTCATGGGGGA 60.286 66.667 0.00 0.00 0.00 4.81
753 3840 3.797353 CGGGTCTGGTCATGGGGG 61.797 72.222 0.00 0.00 0.00 5.40
754 3841 3.009115 ACGGGTCTGGTCATGGGG 61.009 66.667 0.00 0.00 0.00 4.96
755 3842 1.261938 TACACGGGTCTGGTCATGGG 61.262 60.000 0.00 0.00 0.00 4.00
756 3843 0.830648 ATACACGGGTCTGGTCATGG 59.169 55.000 0.00 0.00 0.00 3.66
757 3844 1.757118 AGATACACGGGTCTGGTCATG 59.243 52.381 0.00 0.00 0.00 3.07
758 3845 2.160721 AGATACACGGGTCTGGTCAT 57.839 50.000 0.00 0.00 0.00 3.06
759 3846 2.812836 TAGATACACGGGTCTGGTCA 57.187 50.000 0.00 0.00 0.00 4.02
760 3847 3.220110 TCATAGATACACGGGTCTGGTC 58.780 50.000 0.00 0.00 0.00 4.02
761 3848 3.308035 TCATAGATACACGGGTCTGGT 57.692 47.619 0.00 0.00 0.00 4.00
762 3849 3.383505 TGTTCATAGATACACGGGTCTGG 59.616 47.826 0.00 0.00 0.00 3.86
763 3850 4.649088 TGTTCATAGATACACGGGTCTG 57.351 45.455 0.00 0.00 0.00 3.51
764 3851 5.871396 AATGTTCATAGATACACGGGTCT 57.129 39.130 0.00 0.00 0.00 3.85
765 3852 6.281405 AGAAATGTTCATAGATACACGGGTC 58.719 40.000 0.00 0.00 0.00 4.46
766 3853 6.235231 AGAAATGTTCATAGATACACGGGT 57.765 37.500 0.00 0.00 0.00 5.28
767 3854 8.088365 TGATAGAAATGTTCATAGATACACGGG 58.912 37.037 0.00 0.00 0.00 5.28
768 3855 9.645059 ATGATAGAAATGTTCATAGATACACGG 57.355 33.333 0.00 0.00 0.00 4.94
782 3869 8.993121 CGCCACTTTATTAGATGATAGAAATGT 58.007 33.333 0.00 0.00 0.00 2.71
783 3870 9.208022 TCGCCACTTTATTAGATGATAGAAATG 57.792 33.333 0.00 0.00 0.00 2.32
784 3871 9.429359 CTCGCCACTTTATTAGATGATAGAAAT 57.571 33.333 0.00 0.00 0.00 2.17
785 3872 8.638873 TCTCGCCACTTTATTAGATGATAGAAA 58.361 33.333 0.00 0.00 0.00 2.52
786 3873 8.178313 TCTCGCCACTTTATTAGATGATAGAA 57.822 34.615 0.00 0.00 0.00 2.10
787 3874 7.761038 TCTCGCCACTTTATTAGATGATAGA 57.239 36.000 0.00 0.00 0.00 1.98
788 3875 8.994429 AATCTCGCCACTTTATTAGATGATAG 57.006 34.615 0.00 0.00 0.00 2.08
789 3876 9.424319 GAAATCTCGCCACTTTATTAGATGATA 57.576 33.333 0.00 0.00 0.00 2.15
790 3877 8.153550 AGAAATCTCGCCACTTTATTAGATGAT 58.846 33.333 0.00 0.00 0.00 2.45
791 3878 7.500992 AGAAATCTCGCCACTTTATTAGATGA 58.499 34.615 0.00 0.00 0.00 2.92
792 3879 7.439356 TGAGAAATCTCGCCACTTTATTAGATG 59.561 37.037 5.99 0.00 45.72 2.90
793 3880 7.500992 TGAGAAATCTCGCCACTTTATTAGAT 58.499 34.615 5.99 0.00 45.72 1.98
794 3881 6.873997 TGAGAAATCTCGCCACTTTATTAGA 58.126 36.000 5.99 0.00 45.72 2.10
795 3882 7.539712 TTGAGAAATCTCGCCACTTTATTAG 57.460 36.000 5.99 0.00 45.72 1.73
796 3883 7.915293 TTTGAGAAATCTCGCCACTTTATTA 57.085 32.000 5.99 0.00 45.72 0.98
797 3884 6.817765 TTTGAGAAATCTCGCCACTTTATT 57.182 33.333 5.99 0.00 45.72 1.40
798 3885 6.817765 TTTTGAGAAATCTCGCCACTTTAT 57.182 33.333 5.99 0.00 45.72 1.40
799 3886 6.627395 TTTTTGAGAAATCTCGCCACTTTA 57.373 33.333 5.99 0.00 45.72 1.85
800 3887 5.514274 TTTTTGAGAAATCTCGCCACTTT 57.486 34.783 5.99 0.00 45.72 2.66
827 3914 6.003950 TGGATCTTGAAAGGAGATCGTTTTT 58.996 36.000 7.73 0.00 46.71 1.94
828 3915 5.560724 TGGATCTTGAAAGGAGATCGTTTT 58.439 37.500 7.73 0.00 46.71 2.43
829 3916 5.165961 TGGATCTTGAAAGGAGATCGTTT 57.834 39.130 7.73 0.41 46.71 3.60
830 3917 4.383552 CCTGGATCTTGAAAGGAGATCGTT 60.384 45.833 7.73 0.00 46.71 3.85
831 3918 3.133721 CCTGGATCTTGAAAGGAGATCGT 59.866 47.826 7.73 0.00 46.71 3.73
867 3954 2.992847 TCAAGTCCTCCTCTACCACA 57.007 50.000 0.00 0.00 0.00 4.17
914 4001 9.534565 GACCGACCACGTATTATATCTACTATA 57.465 37.037 0.00 0.00 37.88 1.31
918 4005 5.120830 ACGACCGACCACGTATTATATCTAC 59.879 44.000 0.00 0.00 40.92 2.59
957 4044 8.767478 AGTTTCGATTTCTAGTTTTTCGGATA 57.233 30.769 0.00 0.00 0.00 2.59
1022 4117 2.901042 GACCACCGAGCCTTAGGG 59.099 66.667 0.00 0.00 0.00 3.53
1023 4118 2.494918 CGACCACCGAGCCTTAGG 59.505 66.667 0.00 0.00 41.76 2.69
1247 4360 2.037136 CGAGAGGTTGCTTGGCCTG 61.037 63.158 3.32 0.00 34.81 4.85
1251 4364 2.048222 TCGCGAGAGGTTGCTTGG 60.048 61.111 3.71 0.00 34.84 3.61
1290 4403 5.680619 TGTTGTAAAGCTCCTCTTTCTTCA 58.319 37.500 0.00 0.00 43.55 3.02
1454 4567 9.851686 ACCATGATGTAATAATTTCTAGAAGCA 57.148 29.630 5.12 0.00 0.00 3.91
1529 4644 3.083349 CTCCATCCTCCACCGCCA 61.083 66.667 0.00 0.00 0.00 5.69
1535 4650 2.687297 CTTCATCCTCTCCATCCTCCA 58.313 52.381 0.00 0.00 0.00 3.86
1813 4939 6.183360 ACCTGCTAGTGATCGACTAAATTGAT 60.183 38.462 0.00 0.00 36.69 2.57
1814 4940 5.127194 ACCTGCTAGTGATCGACTAAATTGA 59.873 40.000 0.00 0.00 36.69 2.57
1882 5008 4.452455 AGTGATCGGACATGAGAAACAAAC 59.548 41.667 0.00 0.00 0.00 2.93
1897 5023 1.066573 AGGTTCTTGCAGAGTGATCGG 60.067 52.381 0.00 0.00 0.00 4.18
2033 5159 7.404671 AGTTGAGGTTTTGTACAGTTTCATT 57.595 32.000 0.00 0.00 0.00 2.57
2064 5190 2.092538 TCACCCAACCAAAAGTAACCGA 60.093 45.455 0.00 0.00 0.00 4.69
2065 5191 2.299521 TCACCCAACCAAAAGTAACCG 58.700 47.619 0.00 0.00 0.00 4.44
2066 5192 3.057806 CGATCACCCAACCAAAAGTAACC 60.058 47.826 0.00 0.00 0.00 2.85
2067 5193 3.816523 TCGATCACCCAACCAAAAGTAAC 59.183 43.478 0.00 0.00 0.00 2.50
2068 5194 4.088056 TCGATCACCCAACCAAAAGTAA 57.912 40.909 0.00 0.00 0.00 2.24
2069 5195 3.773418 TCGATCACCCAACCAAAAGTA 57.227 42.857 0.00 0.00 0.00 2.24
2070 5196 2.649531 TCGATCACCCAACCAAAAGT 57.350 45.000 0.00 0.00 0.00 2.66
2071 5197 2.884639 ACTTCGATCACCCAACCAAAAG 59.115 45.455 0.00 0.00 0.00 2.27
2072 5198 2.882137 GACTTCGATCACCCAACCAAAA 59.118 45.455 0.00 0.00 0.00 2.44
2073 5199 2.105821 AGACTTCGATCACCCAACCAAA 59.894 45.455 0.00 0.00 0.00 3.28
2074 5200 1.697432 AGACTTCGATCACCCAACCAA 59.303 47.619 0.00 0.00 0.00 3.67
2075 5201 1.001974 CAGACTTCGATCACCCAACCA 59.998 52.381 0.00 0.00 0.00 3.67
2076 5202 1.275291 TCAGACTTCGATCACCCAACC 59.725 52.381 0.00 0.00 0.00 3.77
2077 5203 2.611518 CTCAGACTTCGATCACCCAAC 58.388 52.381 0.00 0.00 0.00 3.77
2078 5204 1.550524 CCTCAGACTTCGATCACCCAA 59.449 52.381 0.00 0.00 0.00 4.12
2079 5205 1.186200 CCTCAGACTTCGATCACCCA 58.814 55.000 0.00 0.00 0.00 4.51
2080 5206 0.461961 CCCTCAGACTTCGATCACCC 59.538 60.000 0.00 0.00 0.00 4.61
2081 5207 1.187087 ACCCTCAGACTTCGATCACC 58.813 55.000 0.00 0.00 0.00 4.02
2082 5208 2.231478 TCAACCCTCAGACTTCGATCAC 59.769 50.000 0.00 0.00 0.00 3.06
2083 5209 2.493675 CTCAACCCTCAGACTTCGATCA 59.506 50.000 0.00 0.00 0.00 2.92
2084 5210 2.737039 GCTCAACCCTCAGACTTCGATC 60.737 54.545 0.00 0.00 0.00 3.69
2085 5211 1.205893 GCTCAACCCTCAGACTTCGAT 59.794 52.381 0.00 0.00 0.00 3.59
2086 5212 0.603569 GCTCAACCCTCAGACTTCGA 59.396 55.000 0.00 0.00 0.00 3.71
2087 5213 0.734253 CGCTCAACCCTCAGACTTCG 60.734 60.000 0.00 0.00 0.00 3.79
2088 5214 0.603569 TCGCTCAACCCTCAGACTTC 59.396 55.000 0.00 0.00 0.00 3.01
2089 5215 1.205893 GATCGCTCAACCCTCAGACTT 59.794 52.381 0.00 0.00 0.00 3.01
2090 5216 0.820871 GATCGCTCAACCCTCAGACT 59.179 55.000 0.00 0.00 0.00 3.24
2091 5217 0.532573 TGATCGCTCAACCCTCAGAC 59.467 55.000 0.00 0.00 0.00 3.51
2092 5218 0.532573 GTGATCGCTCAACCCTCAGA 59.467 55.000 0.00 0.00 31.85 3.27
2093 5219 0.534412 AGTGATCGCTCAACCCTCAG 59.466 55.000 2.02 0.00 31.85 3.35
2094 5220 0.976641 AAGTGATCGCTCAACCCTCA 59.023 50.000 9.70 0.00 31.85 3.86
2095 5221 2.094182 TGTAAGTGATCGCTCAACCCTC 60.094 50.000 9.70 0.00 31.85 4.30
2096 5222 1.899814 TGTAAGTGATCGCTCAACCCT 59.100 47.619 9.70 0.00 31.85 4.34
2097 5223 2.380084 TGTAAGTGATCGCTCAACCC 57.620 50.000 9.70 0.00 31.85 4.11
2098 5224 3.120304 GGTTTGTAAGTGATCGCTCAACC 60.120 47.826 9.70 14.64 31.85 3.77
2099 5225 3.496884 TGGTTTGTAAGTGATCGCTCAAC 59.503 43.478 9.70 11.45 31.85 3.18
2100 5226 3.496884 GTGGTTTGTAAGTGATCGCTCAA 59.503 43.478 9.70 7.74 31.85 3.02
2101 5227 3.064207 GTGGTTTGTAAGTGATCGCTCA 58.936 45.455 9.70 1.05 0.00 4.26
2102 5228 3.326747 AGTGGTTTGTAAGTGATCGCTC 58.673 45.455 9.70 0.00 0.00 5.03
2103 5229 3.326747 GAGTGGTTTGTAAGTGATCGCT 58.673 45.455 2.02 2.02 0.00 4.93
2104 5230 2.415512 GGAGTGGTTTGTAAGTGATCGC 59.584 50.000 0.00 0.00 0.00 4.58
2105 5231 3.659786 TGGAGTGGTTTGTAAGTGATCG 58.340 45.455 0.00 0.00 0.00 3.69
2106 5232 3.437049 GCTGGAGTGGTTTGTAAGTGATC 59.563 47.826 0.00 0.00 0.00 2.92
2107 5233 3.412386 GCTGGAGTGGTTTGTAAGTGAT 58.588 45.455 0.00 0.00 0.00 3.06
2108 5234 2.805295 CGCTGGAGTGGTTTGTAAGTGA 60.805 50.000 0.00 0.00 0.00 3.41
2109 5235 1.531149 CGCTGGAGTGGTTTGTAAGTG 59.469 52.381 0.00 0.00 0.00 3.16
2110 5236 1.140252 ACGCTGGAGTGGTTTGTAAGT 59.860 47.619 0.00 0.00 0.00 2.24
2111 5237 1.531149 CACGCTGGAGTGGTTTGTAAG 59.469 52.381 0.00 0.00 38.40 2.34
2112 5238 1.139256 TCACGCTGGAGTGGTTTGTAA 59.861 47.619 4.80 0.00 42.10 2.41
2113 5239 0.753867 TCACGCTGGAGTGGTTTGTA 59.246 50.000 4.80 0.00 42.10 2.41
2114 5240 0.532862 CTCACGCTGGAGTGGTTTGT 60.533 55.000 4.80 0.00 42.10 2.83
2115 5241 1.230635 CCTCACGCTGGAGTGGTTTG 61.231 60.000 4.80 0.00 42.10 2.93
2116 5242 1.071471 CCTCACGCTGGAGTGGTTT 59.929 57.895 4.80 0.00 42.10 3.27
2117 5243 2.100879 GACCTCACGCTGGAGTGGTT 62.101 60.000 4.80 0.00 42.10 3.67
2118 5244 2.524394 ACCTCACGCTGGAGTGGT 60.524 61.111 4.80 0.00 42.10 4.16
2119 5245 2.262915 GACCTCACGCTGGAGTGG 59.737 66.667 4.80 0.00 42.10 4.00
2120 5246 1.821061 AAGGACCTCACGCTGGAGTG 61.821 60.000 0.00 0.00 43.11 3.51
2121 5247 0.251653 TAAGGACCTCACGCTGGAGT 60.252 55.000 0.00 0.00 32.91 3.85
2122 5248 0.895530 TTAAGGACCTCACGCTGGAG 59.104 55.000 0.00 0.00 34.62 3.86
2123 5249 1.344065 TTTAAGGACCTCACGCTGGA 58.656 50.000 0.00 0.00 0.00 3.86
2124 5250 1.804748 GTTTTAAGGACCTCACGCTGG 59.195 52.381 0.00 0.00 0.00 4.85
2125 5251 1.804748 GGTTTTAAGGACCTCACGCTG 59.195 52.381 0.00 0.00 34.27 5.18
2126 5252 1.271217 GGGTTTTAAGGACCTCACGCT 60.271 52.381 0.00 0.00 37.34 5.07
2127 5253 1.162698 GGGTTTTAAGGACCTCACGC 58.837 55.000 0.00 0.00 37.34 5.34
2128 5254 2.853235 AGGGTTTTAAGGACCTCACG 57.147 50.000 0.00 0.00 37.34 4.35
2129 5255 4.628963 TGTAGGGTTTTAAGGACCTCAC 57.371 45.455 0.00 8.10 37.34 3.51
2130 5256 5.098663 AGATGTAGGGTTTTAAGGACCTCA 58.901 41.667 0.00 7.41 37.34 3.86
2131 5257 5.695424 AGATGTAGGGTTTTAAGGACCTC 57.305 43.478 0.00 1.10 37.34 3.85
2132 5258 5.666265 CCTAGATGTAGGGTTTTAAGGACCT 59.334 44.000 8.09 0.00 42.25 3.85
2133 5259 5.926663 CCTAGATGTAGGGTTTTAAGGACC 58.073 45.833 8.09 2.33 42.25 4.46
2146 5272 2.032620 AGCGGGAACACCTAGATGTAG 58.967 52.381 0.00 0.00 36.97 2.74
2147 5273 2.029623 GAGCGGGAACACCTAGATGTA 58.970 52.381 0.00 0.00 36.97 2.29
2148 5274 0.824759 GAGCGGGAACACCTAGATGT 59.175 55.000 0.00 0.00 36.97 3.06
2149 5275 0.105039 GGAGCGGGAACACCTAGATG 59.895 60.000 0.00 0.00 36.97 2.90
2150 5276 1.049289 GGGAGCGGGAACACCTAGAT 61.049 60.000 0.00 0.00 36.97 1.98
2151 5277 1.684734 GGGAGCGGGAACACCTAGA 60.685 63.158 0.00 0.00 36.97 2.43
2152 5278 1.987855 TGGGAGCGGGAACACCTAG 60.988 63.158 0.00 0.00 36.97 3.02
2153 5279 2.120940 TGGGAGCGGGAACACCTA 59.879 61.111 0.00 0.00 36.97 3.08
2154 5280 3.637273 GTGGGAGCGGGAACACCT 61.637 66.667 0.00 0.00 36.97 4.00
2155 5281 4.717313 GGTGGGAGCGGGAACACC 62.717 72.222 0.00 0.00 45.56 4.16
2156 5282 4.717313 GGGTGGGAGCGGGAACAC 62.717 72.222 0.00 0.00 0.00 3.32
2157 5283 4.974438 AGGGTGGGAGCGGGAACA 62.974 66.667 0.00 0.00 0.00 3.18
2158 5284 4.097361 GAGGGTGGGAGCGGGAAC 62.097 72.222 0.00 0.00 0.00 3.62
2164 5290 4.329545 TTGTGCGAGGGTGGGAGC 62.330 66.667 0.00 0.00 0.00 4.70
2165 5291 2.358737 GTTGTGCGAGGGTGGGAG 60.359 66.667 0.00 0.00 0.00 4.30
2166 5292 3.948719 GGTTGTGCGAGGGTGGGA 61.949 66.667 0.00 0.00 0.00 4.37
2167 5293 3.901797 GAGGTTGTGCGAGGGTGGG 62.902 68.421 0.00 0.00 0.00 4.61
2168 5294 2.358737 GAGGTTGTGCGAGGGTGG 60.359 66.667 0.00 0.00 0.00 4.61
2169 5295 0.535102 AAAGAGGTTGTGCGAGGGTG 60.535 55.000 0.00 0.00 0.00 4.61
2170 5296 0.250338 GAAAGAGGTTGTGCGAGGGT 60.250 55.000 0.00 0.00 0.00 4.34
2171 5297 0.955919 GGAAAGAGGTTGTGCGAGGG 60.956 60.000 0.00 0.00 0.00 4.30
2172 5298 0.035458 AGGAAAGAGGTTGTGCGAGG 59.965 55.000 0.00 0.00 0.00 4.63
2173 5299 1.001406 AGAGGAAAGAGGTTGTGCGAG 59.999 52.381 0.00 0.00 0.00 5.03
2174 5300 1.048601 AGAGGAAAGAGGTTGTGCGA 58.951 50.000 0.00 0.00 0.00 5.10
2175 5301 1.532868 CAAGAGGAAAGAGGTTGTGCG 59.467 52.381 0.00 0.00 0.00 5.34
2176 5302 1.268079 GCAAGAGGAAAGAGGTTGTGC 59.732 52.381 0.00 0.00 0.00 4.57
2177 5303 2.575532 TGCAAGAGGAAAGAGGTTGTG 58.424 47.619 0.00 0.00 0.00 3.33
2178 5304 3.297134 TTGCAAGAGGAAAGAGGTTGT 57.703 42.857 0.00 0.00 0.00 3.32
2179 5305 3.822735 TCATTGCAAGAGGAAAGAGGTTG 59.177 43.478 4.94 0.00 0.00 3.77
2180 5306 3.823304 GTCATTGCAAGAGGAAAGAGGTT 59.177 43.478 4.94 0.00 0.00 3.50
2181 5307 3.416156 GTCATTGCAAGAGGAAAGAGGT 58.584 45.455 4.94 0.00 0.00 3.85
2182 5308 2.417933 CGTCATTGCAAGAGGAAAGAGG 59.582 50.000 4.94 0.00 0.00 3.69
2183 5309 2.159599 GCGTCATTGCAAGAGGAAAGAG 60.160 50.000 17.18 5.56 34.15 2.85
2184 5310 1.806542 GCGTCATTGCAAGAGGAAAGA 59.193 47.619 17.18 1.41 34.15 2.52
2185 5311 1.464687 CGCGTCATTGCAAGAGGAAAG 60.465 52.381 17.18 9.07 34.15 2.62
2186 5312 0.516877 CGCGTCATTGCAAGAGGAAA 59.483 50.000 17.18 0.00 34.15 3.13
2187 5313 0.602638 ACGCGTCATTGCAAGAGGAA 60.603 50.000 5.58 0.00 34.15 3.36
2188 5314 1.005037 ACGCGTCATTGCAAGAGGA 60.005 52.632 5.58 8.04 34.15 3.71
2189 5315 1.421485 GACGCGTCATTGCAAGAGG 59.579 57.895 33.09 9.36 34.15 3.69
2190 5316 1.057822 CGACGCGTCATTGCAAGAG 59.942 57.895 35.71 14.63 34.15 2.85
2191 5317 1.663388 ACGACGCGTCATTGCAAGA 60.663 52.632 35.71 0.00 33.69 3.02
2192 5318 2.853210 ACGACGCGTCATTGCAAG 59.147 55.556 35.71 21.05 33.69 4.01
2355 5485 3.249799 CGAGCAAACAACCACAAGTCATA 59.750 43.478 0.00 0.00 0.00 2.15
2356 5486 2.033299 CGAGCAAACAACCACAAGTCAT 59.967 45.455 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.