Multiple sequence alignment - TraesCS1A01G440200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G440200 chr1A 100.000 5776 0 0 1 5776 589439264 589445039 0.000000e+00 10667.0
1 TraesCS1A01G440200 chr1A 95.491 621 26 1 4478 5098 589450765 589451383 0.000000e+00 990.0
2 TraesCS1A01G440200 chr1A 88.889 666 50 10 4433 5098 589497576 589498217 0.000000e+00 798.0
3 TraesCS1A01G440200 chr1A 90.798 163 11 4 4437 4595 589476393 589476555 1.260000e-51 215.0
4 TraesCS1A01G440200 chr1A 92.958 142 7 2 5631 5772 589476565 589476703 2.730000e-48 204.0
5 TraesCS1A01G440200 chr1A 89.172 157 14 3 5087 5241 409855176 409855021 5.910000e-45 193.0
6 TraesCS1A01G440200 chr1A 88.608 79 6 1 5631 5709 589451735 589451810 6.160000e-15 93.5
7 TraesCS1A01G440200 chr1A 95.652 46 1 1 5728 5772 589498724 589498769 8.030000e-09 73.1
8 TraesCS1A01G440200 chr5B 92.723 3078 170 34 1138 4184 298689041 298685987 0.000000e+00 4394.0
9 TraesCS1A01G440200 chr5B 86.093 151 14 5 5097 5240 586993657 586993807 7.750000e-34 156.0
10 TraesCS1A01G440200 chr5B 96.429 84 3 0 540 623 298689117 298689034 7.800000e-29 139.0
11 TraesCS1A01G440200 chr1B 88.854 3230 242 60 534 3692 683572114 683575296 0.000000e+00 3862.0
12 TraesCS1A01G440200 chr1B 92.476 957 61 4 4144 5098 683576073 683577020 0.000000e+00 1358.0
13 TraesCS1A01G440200 chr1B 87.455 550 50 13 2357 2896 683586945 683587485 2.960000e-172 616.0
14 TraesCS1A01G440200 chr1B 89.433 388 25 12 1967 2350 641930923 641930548 5.240000e-130 475.0
15 TraesCS1A01G440200 chr1B 81.799 478 66 15 1 471 683571654 683572117 1.170000e-101 381.0
16 TraesCS1A01G440200 chr1B 87.747 253 31 0 4846 5098 683580524 683580776 4.380000e-76 296.0
17 TraesCS1A01G440200 chr1B 94.366 142 8 0 5631 5772 683577335 683577476 9.740000e-53 219.0
18 TraesCS1A01G440200 chr1B 91.837 147 12 0 5095 5241 515917895 515917749 7.590000e-49 206.0
19 TraesCS1A01G440200 chr1B 94.828 58 3 0 463 520 426466165 426466222 2.220000e-14 91.6
20 TraesCS1A01G440200 chr1D 89.477 3022 201 60 684 3654 491632116 491635071 0.000000e+00 3711.0
21 TraesCS1A01G440200 chr1D 93.103 928 60 3 4171 5098 491635667 491636590 0.000000e+00 1356.0
22 TraesCS1A01G440200 chr1D 89.209 278 26 3 3771 4046 491635246 491635521 1.540000e-90 344.0
23 TraesCS1A01G440200 chr1D 95.070 142 6 1 5631 5772 491636995 491637135 7.530000e-54 222.0
24 TraesCS1A01G440200 chr4A 91.716 2511 158 30 1697 4181 340790221 340792707 0.000000e+00 3439.0
25 TraesCS1A01G440200 chr4A 97.213 574 14 2 1138 1710 340789624 340790196 0.000000e+00 970.0
26 TraesCS1A01G440200 chr4A 91.864 590 29 14 1568 2155 588877514 588878086 0.000000e+00 806.0
27 TraesCS1A01G440200 chr7A 91.849 1325 80 13 2879 4181 713947199 713948517 0.000000e+00 1823.0
28 TraesCS1A01G440200 chr7A 87.133 443 43 8 1538 1970 55193779 55193341 1.870000e-134 490.0
29 TraesCS1A01G440200 chr7A 88.918 388 29 9 1966 2350 55193193 55192817 3.150000e-127 466.0
30 TraesCS1A01G440200 chr7A 96.154 52 2 0 469 520 435725704 435725653 1.030000e-12 86.1
31 TraesCS1A01G440200 chr7B 84.397 1160 131 29 882 2025 42367351 42368476 0.000000e+00 1094.0
32 TraesCS1A01G440200 chr7B 89.175 388 27 9 1967 2350 63706250 63705874 2.440000e-128 470.0
33 TraesCS1A01G440200 chr7B 93.464 153 9 1 5093 5244 526430878 526430726 5.820000e-55 226.0
34 TraesCS1A01G440200 chr7B 90.141 142 10 3 5103 5243 500790848 500790710 1.280000e-41 182.0
35 TraesCS1A01G440200 chr2D 89.546 727 54 12 1243 1952 100848149 100847428 0.000000e+00 902.0
36 TraesCS1A01G440200 chr3D 91.776 608 25 16 1078 1674 588637992 588637399 0.000000e+00 822.0
37 TraesCS1A01G440200 chr3D 90.879 603 31 14 1082 1674 432912484 432913072 0.000000e+00 787.0
38 TraesCS1A01G440200 chr3D 88.713 443 36 8 1538 1970 564479884 564479446 3.960000e-146 529.0
39 TraesCS1A01G440200 chr3D 89.948 388 25 9 1966 2350 564479300 564478924 6.730000e-134 488.0
40 TraesCS1A01G440200 chr3D 86.000 150 17 4 5093 5240 93257359 93257506 2.150000e-34 158.0
41 TraesCS1A01G440200 chr3D 94.737 57 3 0 464 520 450878874 450878818 7.970000e-14 89.8
42 TraesCS1A01G440200 chr7D 91.556 604 32 13 1078 1674 618996972 618997563 0.000000e+00 815.0
43 TraesCS1A01G440200 chr7D 89.032 155 9 2 5097 5243 36659737 36659891 9.880000e-43 185.0
44 TraesCS1A01G440200 chr7D 87.943 141 15 2 5096 5234 600508528 600508668 1.290000e-36 165.0
45 TraesCS1A01G440200 chr5D 93.822 518 22 8 1150 1659 434898626 434898111 0.000000e+00 771.0
46 TraesCS1A01G440200 chr5D 93.130 524 24 10 1144 1659 369533543 369534062 0.000000e+00 758.0
47 TraesCS1A01G440200 chr5D 89.394 66 5 2 456 520 52258192 52258128 1.330000e-11 82.4
48 TraesCS1A01G440200 chr2B 86.907 443 44 8 1538 1970 750473263 750473701 8.700000e-133 484.0
49 TraesCS1A01G440200 chr2B 89.691 388 25 11 1967 2350 750473839 750474215 1.130000e-131 481.0
50 TraesCS1A01G440200 chr6B 89.062 384 26 12 1967 2347 418730725 418730355 4.080000e-126 462.0
51 TraesCS1A01G440200 chr5A 89.542 153 15 1 5091 5243 629285384 629285535 5.910000e-45 193.0
52 TraesCS1A01G440200 chr6A 95.000 60 1 2 461 520 511531716 511531659 6.160000e-15 93.5
53 TraesCS1A01G440200 chr2A 96.429 56 2 0 465 520 690329333 690329388 6.160000e-15 93.5
54 TraesCS1A01G440200 chr6D 98.077 52 1 0 469 520 50742268 50742319 2.220000e-14 91.6
55 TraesCS1A01G440200 chr6D 98.077 52 1 0 469 520 196357992 196357941 2.220000e-14 91.6
56 TraesCS1A01G440200 chr6D 89.394 66 5 2 455 520 296699481 296699544 1.330000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G440200 chr1A 589439264 589445039 5775 False 10667.00 10667 100.00000 1 5776 1 chr1A.!!$F1 5775
1 TraesCS1A01G440200 chr1A 589450765 589451810 1045 False 541.75 990 92.04950 4478 5709 2 chr1A.!!$F2 1231
2 TraesCS1A01G440200 chr1A 589497576 589498769 1193 False 435.55 798 92.27050 4433 5772 2 chr1A.!!$F4 1339
3 TraesCS1A01G440200 chr5B 298685987 298689117 3130 True 2266.50 4394 94.57600 540 4184 2 chr5B.!!$R1 3644
4 TraesCS1A01G440200 chr1B 683571654 683580776 9122 False 1223.20 3862 89.04840 1 5772 5 chr1B.!!$F3 5771
5 TraesCS1A01G440200 chr1B 683586945 683587485 540 False 616.00 616 87.45500 2357 2896 1 chr1B.!!$F2 539
6 TraesCS1A01G440200 chr1D 491632116 491637135 5019 False 1408.25 3711 91.71475 684 5772 4 chr1D.!!$F1 5088
7 TraesCS1A01G440200 chr4A 340789624 340792707 3083 False 2204.50 3439 94.46450 1138 4181 2 chr4A.!!$F2 3043
8 TraesCS1A01G440200 chr4A 588877514 588878086 572 False 806.00 806 91.86400 1568 2155 1 chr4A.!!$F1 587
9 TraesCS1A01G440200 chr7A 713947199 713948517 1318 False 1823.00 1823 91.84900 2879 4181 1 chr7A.!!$F1 1302
10 TraesCS1A01G440200 chr7A 55192817 55193779 962 True 478.00 490 88.02550 1538 2350 2 chr7A.!!$R2 812
11 TraesCS1A01G440200 chr7B 42367351 42368476 1125 False 1094.00 1094 84.39700 882 2025 1 chr7B.!!$F1 1143
12 TraesCS1A01G440200 chr2D 100847428 100848149 721 True 902.00 902 89.54600 1243 1952 1 chr2D.!!$R1 709
13 TraesCS1A01G440200 chr3D 588637399 588637992 593 True 822.00 822 91.77600 1078 1674 1 chr3D.!!$R2 596
14 TraesCS1A01G440200 chr3D 432912484 432913072 588 False 787.00 787 90.87900 1082 1674 1 chr3D.!!$F2 592
15 TraesCS1A01G440200 chr3D 564478924 564479884 960 True 508.50 529 89.33050 1538 2350 2 chr3D.!!$R3 812
16 TraesCS1A01G440200 chr7D 618996972 618997563 591 False 815.00 815 91.55600 1078 1674 1 chr7D.!!$F3 596
17 TraesCS1A01G440200 chr5D 434898111 434898626 515 True 771.00 771 93.82200 1150 1659 1 chr5D.!!$R2 509
18 TraesCS1A01G440200 chr5D 369533543 369534062 519 False 758.00 758 93.13000 1144 1659 1 chr5D.!!$F1 515
19 TraesCS1A01G440200 chr2B 750473263 750474215 952 False 482.50 484 88.29900 1538 2350 2 chr2B.!!$F1 812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 953 0.107456 ACCACCACACAAGAGCAGAG 59.893 55.0 0.0 0.0 0.0 3.35 F
919 959 0.321021 ACACAAGAGCAGAGCAGAGG 59.679 55.0 0.0 0.0 0.0 3.69 F
1870 2021 0.378610 GTCCTCAGCGCTTAATTGGC 59.621 55.0 7.5 0.0 0.0 4.52 F
3518 3903 0.324943 GAACTACCCTCCAGCTTGCA 59.675 55.0 0.0 0.0 0.0 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2364 2726 1.512926 AGGCAAGCAACAACGTAGAG 58.487 50.000 0.0 0.0 0.0 2.43 R
2365 2727 1.601903 CAAGGCAAGCAACAACGTAGA 59.398 47.619 0.0 0.0 0.0 2.59 R
3798 4372 2.633967 GCCCATGATTCCATTATGCCAA 59.366 45.455 0.0 0.0 0.0 4.52 R
5244 6113 0.033920 CCAACAAGGGGCAAAGAAGC 59.966 55.000 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.640917 TGACTACTCCTGGGTTCCAC 58.359 55.000 0.00 0.00 0.00 4.02
22 23 1.149288 ACTACTCCTGGGTTCCACTGA 59.851 52.381 0.00 0.00 0.00 3.41
47 50 9.920826 GATGTACACATCTACAATACACAATTG 57.079 33.333 13.85 3.24 46.73 2.32
53 56 9.154847 CACATCTACAATACACAATTGAGAGAA 57.845 33.333 13.59 0.00 46.81 2.87
72 75 2.730550 AAATGCAAGGCACACTTAGC 57.269 45.000 0.00 0.00 43.04 3.09
73 76 1.619654 AATGCAAGGCACACTTAGCA 58.380 45.000 0.00 0.00 43.04 3.49
79 82 3.829948 CAAGGCACACTTAGCATGAAAG 58.170 45.455 0.00 1.41 37.29 2.62
84 88 3.426695 GCACACTTAGCATGAAAGCGAAT 60.427 43.478 0.00 0.00 40.15 3.34
90 94 7.119997 CACTTAGCATGAAAGCGAATAGTAAC 58.880 38.462 0.00 0.00 40.15 2.50
92 96 7.333423 ACTTAGCATGAAAGCGAATAGTAACAA 59.667 33.333 0.00 0.00 40.15 2.83
169 173 6.206634 TGCGAAAACATAAGAAGTCCAAATCT 59.793 34.615 0.00 0.00 0.00 2.40
172 176 7.746475 CGAAAACATAAGAAGTCCAAATCTGTC 59.254 37.037 0.00 0.00 0.00 3.51
182 187 7.716998 AGAAGTCCAAATCTGTCGCATAATATT 59.283 33.333 0.00 0.00 0.00 1.28
211 216 3.057019 CGTGAATTGTCGTGGAGAAAGA 58.943 45.455 0.00 0.00 0.00 2.52
215 220 6.262601 GTGAATTGTCGTGGAGAAAGAAAAA 58.737 36.000 0.00 0.00 0.00 1.94
257 262 6.426328 ACATTTGTGCAGAAAAAGAAACACAA 59.574 30.769 13.53 0.00 43.90 3.33
261 266 5.580297 TGTGCAGAAAAAGAAACACAAATCC 59.420 36.000 0.00 0.00 35.28 3.01
268 273 8.531146 AGAAAAAGAAACACAAATCCTTCAAGA 58.469 29.630 0.00 0.00 0.00 3.02
278 283 9.466497 ACACAAATCCTTCAAGACATGTTATAT 57.534 29.630 0.00 0.00 0.00 0.86
284 289 9.995003 ATCCTTCAAGACATGTTATATCTTCTC 57.005 33.333 0.00 0.00 30.17 2.87
286 291 8.428063 CCTTCAAGACATGTTATATCTTCTCCT 58.572 37.037 0.00 0.00 30.17 3.69
287 292 9.258826 CTTCAAGACATGTTATATCTTCTCCTG 57.741 37.037 0.00 0.00 30.17 3.86
302 308 2.239907 TCTCCTGAAGATCTGGTCGAGA 59.760 50.000 0.00 2.41 36.89 4.04
372 379 7.735326 AAAGGATAACTTACTAGAGAAGCCA 57.265 36.000 0.00 0.00 38.85 4.75
377 384 5.916661 AACTTACTAGAGAAGCCAATCGA 57.083 39.130 0.00 0.00 0.00 3.59
378 385 5.251601 ACTTACTAGAGAAGCCAATCGAC 57.748 43.478 0.00 0.00 0.00 4.20
387 395 3.499918 AGAAGCCAATCGACAAGACTTTG 59.500 43.478 0.00 0.00 40.24 2.77
389 397 1.401539 GCCAATCGACAAGACTTTGCC 60.402 52.381 0.00 0.00 37.85 4.52
398 406 4.246458 GACAAGACTTTGCCGATCTACTT 58.754 43.478 0.00 0.00 37.85 2.24
401 409 2.168728 AGACTTTGCCGATCTACTTCCC 59.831 50.000 0.00 0.00 0.00 3.97
406 414 2.184533 TGCCGATCTACTTCCCAAGAA 58.815 47.619 0.00 0.00 0.00 2.52
407 415 2.771943 TGCCGATCTACTTCCCAAGAAT 59.228 45.455 0.00 0.00 0.00 2.40
408 416 3.964688 TGCCGATCTACTTCCCAAGAATA 59.035 43.478 0.00 0.00 0.00 1.75
413 421 5.915758 CGATCTACTTCCCAAGAATAGAACG 59.084 44.000 0.00 0.00 35.23 3.95
414 422 6.238676 CGATCTACTTCCCAAGAATAGAACGA 60.239 42.308 13.25 0.00 38.62 3.85
415 423 6.452494 TCTACTTCCCAAGAATAGAACGAG 57.548 41.667 0.00 0.00 0.00 4.18
416 424 6.185511 TCTACTTCCCAAGAATAGAACGAGA 58.814 40.000 0.00 0.00 0.00 4.04
419 427 6.531021 ACTTCCCAAGAATAGAACGAGAAAA 58.469 36.000 0.00 0.00 0.00 2.29
420 428 6.427242 ACTTCCCAAGAATAGAACGAGAAAAC 59.573 38.462 0.00 0.00 0.00 2.43
421 429 6.110411 TCCCAAGAATAGAACGAGAAAACT 57.890 37.500 0.00 0.00 0.00 2.66
430 438 3.621715 AGAACGAGAAAACTGTGGTGAAC 59.378 43.478 0.00 0.00 0.00 3.18
444 452 4.418392 GTGGTGAACACGTATTACGATCT 58.582 43.478 22.18 5.91 46.05 2.75
449 457 5.570206 GTGAACACGTATTACGATCTGAACA 59.430 40.000 22.18 11.98 46.05 3.18
451 459 5.306532 ACACGTATTACGATCTGAACACT 57.693 39.130 22.18 0.00 46.05 3.55
453 461 4.733887 CACGTATTACGATCTGAACACTCC 59.266 45.833 22.18 0.00 46.05 3.85
456 464 5.450137 CGTATTACGATCTGAACACTCCCTT 60.450 44.000 10.70 0.00 46.05 3.95
462 470 3.244887 TCTGAACACTCCCTTGAGAGA 57.755 47.619 0.00 0.00 41.42 3.10
467 475 2.374184 ACACTCCCTTGAGAGAGATCG 58.626 52.381 0.00 0.00 41.42 3.69
468 476 2.025793 ACACTCCCTTGAGAGAGATCGA 60.026 50.000 0.00 0.00 41.42 3.59
469 477 2.357637 CACTCCCTTGAGAGAGATCGAC 59.642 54.545 0.00 0.00 41.42 4.20
470 478 2.241176 ACTCCCTTGAGAGAGATCGACT 59.759 50.000 0.00 0.00 41.42 4.18
471 479 2.878406 CTCCCTTGAGAGAGATCGACTC 59.122 54.545 12.74 12.74 41.42 3.36
472 480 1.953686 CCCTTGAGAGAGATCGACTCC 59.046 57.143 15.65 10.07 45.96 3.85
473 481 1.953686 CCTTGAGAGAGATCGACTCCC 59.046 57.143 15.65 7.98 45.96 4.30
474 482 2.422803 CCTTGAGAGAGATCGACTCCCT 60.423 54.545 15.65 5.39 45.96 4.20
475 483 2.631160 TGAGAGAGATCGACTCCCTC 57.369 55.000 14.96 14.96 46.29 4.30
476 484 2.123589 TGAGAGAGATCGACTCCCTCT 58.876 52.381 19.38 14.28 46.26 3.69
477 485 2.158827 TGAGAGAGATCGACTCCCTCTG 60.159 54.545 19.38 0.00 46.26 3.35
478 486 1.843851 AGAGAGATCGACTCCCTCTGT 59.156 52.381 15.65 6.53 45.96 3.41
479 487 3.042682 AGAGAGATCGACTCCCTCTGTA 58.957 50.000 15.65 0.00 45.96 2.74
480 488 3.456644 AGAGAGATCGACTCCCTCTGTAA 59.543 47.826 15.65 0.00 45.96 2.41
481 489 4.080243 AGAGAGATCGACTCCCTCTGTAAA 60.080 45.833 15.65 0.00 45.96 2.01
482 490 3.949113 AGAGATCGACTCCCTCTGTAAAC 59.051 47.826 10.24 0.00 45.96 2.01
483 491 3.695060 GAGATCGACTCCCTCTGTAAACA 59.305 47.826 0.00 0.00 39.53 2.83
484 492 4.087182 AGATCGACTCCCTCTGTAAACAA 58.913 43.478 0.00 0.00 0.00 2.83
485 493 4.527038 AGATCGACTCCCTCTGTAAACAAA 59.473 41.667 0.00 0.00 0.00 2.83
486 494 4.884668 TCGACTCCCTCTGTAAACAAAT 57.115 40.909 0.00 0.00 0.00 2.32
487 495 5.988310 TCGACTCCCTCTGTAAACAAATA 57.012 39.130 0.00 0.00 0.00 1.40
488 496 6.540438 TCGACTCCCTCTGTAAACAAATAT 57.460 37.500 0.00 0.00 0.00 1.28
489 497 7.649533 TCGACTCCCTCTGTAAACAAATATA 57.350 36.000 0.00 0.00 0.00 0.86
490 498 8.070034 TCGACTCCCTCTGTAAACAAATATAA 57.930 34.615 0.00 0.00 0.00 0.98
491 499 8.195436 TCGACTCCCTCTGTAAACAAATATAAG 58.805 37.037 0.00 0.00 0.00 1.73
492 500 8.195436 CGACTCCCTCTGTAAACAAATATAAGA 58.805 37.037 0.00 0.00 0.00 2.10
493 501 9.535878 GACTCCCTCTGTAAACAAATATAAGAG 57.464 37.037 0.00 0.00 0.00 2.85
494 502 7.988028 ACTCCCTCTGTAAACAAATATAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
495 503 6.984474 TCCCTCTGTAAACAAATATAAGAGCG 59.016 38.462 0.00 0.00 0.00 5.03
496 504 6.761714 CCCTCTGTAAACAAATATAAGAGCGT 59.238 38.462 0.00 0.00 0.00 5.07
497 505 7.280205 CCCTCTGTAAACAAATATAAGAGCGTT 59.720 37.037 0.00 0.00 0.00 4.84
498 506 8.665685 CCTCTGTAAACAAATATAAGAGCGTTT 58.334 33.333 0.00 0.00 0.00 3.60
506 514 9.601217 AACAAATATAAGAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 37.82 3.41
512 520 5.899120 AGAGCGTTTAGATCACTACTTCA 57.101 39.130 0.00 0.00 37.82 3.02
513 521 5.885881 AGAGCGTTTAGATCACTACTTCAG 58.114 41.667 0.00 0.00 37.82 3.02
514 522 5.416326 AGAGCGTTTAGATCACTACTTCAGT 59.584 40.000 0.00 0.00 37.82 3.41
527 535 6.672266 ACTACTTCAGTGATCTTTCAAGGA 57.328 37.500 0.00 0.00 35.62 3.36
528 536 7.251321 ACTACTTCAGTGATCTTTCAAGGAT 57.749 36.000 0.00 0.00 35.62 3.24
529 537 7.102346 ACTACTTCAGTGATCTTTCAAGGATG 58.898 38.462 0.00 0.00 35.62 3.51
530 538 5.251764 ACTTCAGTGATCTTTCAAGGATGG 58.748 41.667 0.00 0.00 32.48 3.51
531 539 5.013495 ACTTCAGTGATCTTTCAAGGATGGA 59.987 40.000 0.00 0.00 32.48 3.41
532 540 5.095145 TCAGTGATCTTTCAAGGATGGAG 57.905 43.478 0.00 0.00 32.48 3.86
536 544 5.485353 AGTGATCTTTCAAGGATGGAGTACA 59.515 40.000 0.00 0.00 32.48 2.90
617 633 5.397142 AACGGATTCTTAAGTACGAACCT 57.603 39.130 4.82 0.00 0.00 3.50
618 634 6.515272 AACGGATTCTTAAGTACGAACCTA 57.485 37.500 4.82 0.00 0.00 3.08
620 636 6.501781 ACGGATTCTTAAGTACGAACCTATG 58.498 40.000 4.82 0.00 0.00 2.23
622 638 5.695363 GGATTCTTAAGTACGAACCTATGCC 59.305 44.000 1.63 0.00 0.00 4.40
632 648 5.410355 ACGAACCTATGCCTTTGTAAGTA 57.590 39.130 0.00 0.00 0.00 2.24
635 651 6.127140 ACGAACCTATGCCTTTGTAAGTATCT 60.127 38.462 0.00 0.00 0.00 1.98
638 654 7.916077 ACCTATGCCTTTGTAAGTATCTACT 57.084 36.000 0.00 0.00 38.39 2.57
645 661 7.389607 TGCCTTTGTAAGTATCTACTGGAAAAC 59.610 37.037 0.00 0.00 36.50 2.43
677 695 9.797556 GTTTTGTAGGAATTCAAACTTGTAAGT 57.202 29.630 7.93 0.00 42.04 2.24
732 750 1.499007 ACATTCAACCACCCTTCACCT 59.501 47.619 0.00 0.00 0.00 4.00
789 807 3.316308 AGGTTGTTGTCTTGTTGATCTGC 59.684 43.478 0.00 0.00 0.00 4.26
797 815 2.306805 TCTTGTTGATCTGCCTGGACAT 59.693 45.455 0.00 0.00 0.00 3.06
811 830 1.359130 TGGACATGAGTCAGGAGAGGA 59.641 52.381 12.53 0.00 46.80 3.71
910 950 1.152984 CCACCACCACACAAGAGCA 60.153 57.895 0.00 0.00 0.00 4.26
911 951 1.168407 CCACCACCACACAAGAGCAG 61.168 60.000 0.00 0.00 0.00 4.24
912 952 0.179048 CACCACCACACAAGAGCAGA 60.179 55.000 0.00 0.00 0.00 4.26
913 953 0.107456 ACCACCACACAAGAGCAGAG 59.893 55.000 0.00 0.00 0.00 3.35
914 954 1.233285 CCACCACACAAGAGCAGAGC 61.233 60.000 0.00 0.00 0.00 4.09
919 959 0.321021 ACACAAGAGCAGAGCAGAGG 59.679 55.000 0.00 0.00 0.00 3.69
1029 1069 4.266070 TACTGGATCGCCGCGCTC 62.266 66.667 8.21 8.14 36.79 5.03
1158 1198 2.416923 ATCCCCTCCTCCTCCTCCC 61.417 68.421 0.00 0.00 0.00 4.30
1342 1409 3.330720 CCTCTTCTTGCCCCCGGT 61.331 66.667 0.00 0.00 0.00 5.28
1358 1425 1.145819 GGTCTGATCTGGCCTCTGC 59.854 63.158 15.48 0.00 0.00 4.26
1505 1575 2.118513 ACCAGGTCCGTCTCTGCT 59.881 61.111 0.00 0.00 0.00 4.24
1512 1582 3.114616 CCGTCTCTGCTTGTGCCG 61.115 66.667 0.00 0.00 38.71 5.69
1746 1877 1.136085 CCACACTGACCAAATTACGCG 60.136 52.381 3.53 3.53 0.00 6.01
1844 1990 3.376859 TGGACAGTGTTGCTTAACAGTTG 59.623 43.478 0.00 0.00 34.31 3.16
1863 2014 1.448540 CATTCGGTCCTCAGCGCTT 60.449 57.895 7.50 0.00 43.45 4.68
1870 2021 0.378610 GTCCTCAGCGCTTAATTGGC 59.621 55.000 7.50 0.00 0.00 4.52
1877 2028 3.111098 CAGCGCTTAATTGGCAGATTTC 58.889 45.455 7.50 0.00 0.00 2.17
1883 2034 2.877043 AATTGGCAGATTTCGGATGC 57.123 45.000 0.00 0.00 39.25 3.91
1891 2042 3.201290 CAGATTTCGGATGCAGCTTACT 58.799 45.455 0.22 0.00 0.00 2.24
1960 2117 3.069289 TGTGCAGCTAGTTTCATGAGTG 58.931 45.455 0.00 0.00 0.00 3.51
1999 2317 2.634453 CCCCTTTTCTGGCACTGAATTT 59.366 45.455 0.00 0.00 45.27 1.82
2058 2380 4.236935 GGTGCCACATTTTGTCAGTAATG 58.763 43.478 0.00 7.74 37.67 1.90
2358 2720 2.706190 GGAGGGACATGCTTGGTACTAT 59.294 50.000 4.44 0.00 0.00 2.12
2364 2726 7.450903 AGGGACATGCTTGGTACTATTATTAC 58.549 38.462 4.44 0.00 0.00 1.89
2365 2727 7.292591 AGGGACATGCTTGGTACTATTATTACT 59.707 37.037 4.44 0.00 0.00 2.24
2632 3000 7.214467 ACCATCGTTTGAACTATTTTCATGT 57.786 32.000 0.00 0.00 0.00 3.21
2638 3006 6.581919 CGTTTGAACTATTTTCATGTCATGCA 59.418 34.615 8.03 0.00 0.00 3.96
2657 3025 4.490743 TGCATCATTTCAGCAATTGTCTG 58.509 39.130 18.26 18.26 34.97 3.51
2766 3134 7.330208 CCATCACAGAAATCTTTCAAATTCCAC 59.670 37.037 5.53 0.00 39.61 4.02
2786 3154 7.701539 TCCACATATATTTGACTTGCAACTT 57.298 32.000 0.00 0.00 35.91 2.66
2961 3343 8.879342 ATGCTCTCTACACTGTAACATTATTC 57.121 34.615 0.00 0.00 0.00 1.75
3017 3399 4.041198 TCGTGAGAAAGGTTTCCAGGTAAT 59.959 41.667 0.00 0.00 37.92 1.89
3046 3428 5.144100 TGCCCTGATCCTTTCTTTTAAACA 58.856 37.500 0.00 0.00 0.00 2.83
3105 3489 6.588204 CAGTACCATGTAGCCTTTGGTATAA 58.412 40.000 4.51 0.00 45.18 0.98
3109 3493 4.750098 CCATGTAGCCTTTGGTATAACTCG 59.250 45.833 0.00 0.00 0.00 4.18
3121 3505 7.458409 TTGGTATAACTCGTAATAGCTAGGG 57.542 40.000 0.00 0.00 0.00 3.53
3150 3535 9.975218 AAATTAATCTTGTCAGTTGGTACCTAT 57.025 29.630 14.36 0.00 0.00 2.57
3154 3539 7.914427 ATCTTGTCAGTTGGTACCTATCATA 57.086 36.000 14.36 0.00 0.00 2.15
3158 3543 7.490657 TGTCAGTTGGTACCTATCATACTTT 57.509 36.000 14.36 0.00 0.00 2.66
3341 3726 3.445450 AGCTACAGTGAGGTACATGTCTG 59.555 47.826 0.00 4.92 0.00 3.51
3393 3778 3.260740 TGAAACGTACGGTGAACAAACT 58.739 40.909 21.06 0.00 0.00 2.66
3417 3802 4.719773 ACATGCCCTTAGTTCCTGTACATA 59.280 41.667 0.00 0.00 0.00 2.29
3506 3891 8.506168 TCAAAACTCATCCATTATGAACTACC 57.494 34.615 0.00 0.00 44.05 3.18
3518 3903 0.324943 GAACTACCCTCCAGCTTGCA 59.675 55.000 0.00 0.00 0.00 4.08
3540 3925 6.092122 TGCAGTTGGATTCTATTGTAGTTTCG 59.908 38.462 0.00 0.00 0.00 3.46
3635 4020 9.145865 GAACAGTAAGGTTTTGAATTTGTTCAA 57.854 29.630 8.23 0.00 40.72 2.69
3654 4124 8.839310 TGTTCAATGGTTAATTGGTTATTTGG 57.161 30.769 0.00 0.00 45.00 3.28
3685 4168 5.047731 TCAGTGGTAGTCTGAAGATTGTCAG 60.048 44.000 0.00 0.00 45.44 3.51
3700 4183 5.992829 AGATTGTCAGATCATGCTGAATCTC 59.007 40.000 4.79 3.14 45.69 2.75
3741 4224 5.411361 GTGCAAACCTCATATAGTTGTCACA 59.589 40.000 0.00 0.00 33.17 3.58
3794 4368 4.642429 AGGACAATAGTTGAGTTGTGACC 58.358 43.478 0.00 0.00 38.57 4.02
3798 4372 4.348168 ACAATAGTTGAGTTGTGACCTCCT 59.652 41.667 0.00 0.00 37.19 3.69
3814 4388 3.205056 ACCTCCTTGGCATAATGGAATCA 59.795 43.478 0.00 0.00 40.22 2.57
3815 4389 4.140853 ACCTCCTTGGCATAATGGAATCAT 60.141 41.667 0.00 0.00 40.22 2.45
3891 4465 2.032030 CGAAATCATATGGCGGTCAACC 60.032 50.000 2.13 0.00 0.00 3.77
3954 4534 6.170506 TCCGTGATTGTTAGTTCAAAGCTAT 58.829 36.000 0.00 0.00 0.00 2.97
4061 4647 4.202192 ACTGATGCGCTTCTCTATTGATGA 60.202 41.667 22.11 0.00 0.00 2.92
4065 4652 5.475273 TGCGCTTCTCTATTGATGAAAAG 57.525 39.130 9.73 0.00 0.00 2.27
4070 4657 6.292596 CGCTTCTCTATTGATGAAAAGCTACC 60.293 42.308 0.00 0.00 36.41 3.18
4121 4708 3.639094 GCTACTCCTAGTGGTCATCATGT 59.361 47.826 0.00 0.00 34.23 3.21
4212 5079 5.168569 GGTTTGCTAGGTTTATTTGCTTCC 58.831 41.667 0.00 0.00 0.00 3.46
4359 5226 3.194620 TCCTGGTAAATTTCCCTGGCTA 58.805 45.455 17.77 2.72 39.13 3.93
4371 5238 5.450818 TTCCCTGGCTATTATTTGACAGT 57.549 39.130 2.07 0.00 37.61 3.55
4430 5297 1.369689 CAACAGACAACTGCGCTGC 60.370 57.895 14.80 0.00 46.95 5.25
4879 5747 2.090658 CGCGCCGATCAATAATGTAGTC 59.909 50.000 0.00 0.00 0.00 2.59
4893 5761 9.442047 CAATAATGTAGTCTTTCAGAGAACCTT 57.558 33.333 0.00 0.00 35.79 3.50
4913 5781 2.147958 TGAACGTATCCTGGCACAAAC 58.852 47.619 0.00 0.00 38.70 2.93
5017 5886 6.887626 TGTAATTTTGAGTAACCAGGTTCC 57.112 37.500 8.57 0.00 0.00 3.62
5051 5920 4.422073 TCATGGTGAATAAGCTGGGTAG 57.578 45.455 0.00 0.00 0.00 3.18
5063 5932 8.732746 AATAAGCTGGGTAGTATAAACAGTTG 57.267 34.615 0.00 0.00 31.50 3.16
5066 5935 4.094442 GCTGGGTAGTATAAACAGTTGTGC 59.906 45.833 0.00 0.00 31.50 4.57
5071 5940 5.121768 GGTAGTATAAACAGTTGTGCTGGTG 59.878 44.000 0.00 0.00 46.08 4.17
5072 5941 4.072131 AGTATAAACAGTTGTGCTGGTGG 58.928 43.478 0.00 0.00 46.08 4.61
5082 5951 2.670934 GCTGGTGGCTGGTGTGAG 60.671 66.667 0.00 0.00 38.06 3.51
5098 5967 5.106475 TGGTGTGAGTTTGTTTGACAAGTAC 60.106 40.000 0.00 0.00 39.53 2.73
5099 5968 5.329493 GTGTGAGTTTGTTTGACAAGTACC 58.671 41.667 0.00 0.00 39.53 3.34
5100 5969 4.396790 TGTGAGTTTGTTTGACAAGTACCC 59.603 41.667 0.00 0.00 39.53 3.69
5101 5970 3.949113 TGAGTTTGTTTGACAAGTACCCC 59.051 43.478 0.00 0.00 39.53 4.95
5102 5971 3.293337 AGTTTGTTTGACAAGTACCCCC 58.707 45.455 0.00 0.00 39.53 5.40
5103 5972 3.053170 AGTTTGTTTGACAAGTACCCCCT 60.053 43.478 0.00 0.00 39.53 4.79
5105 5974 1.422402 TGTTTGACAAGTACCCCCTCC 59.578 52.381 0.00 0.00 0.00 4.30
5106 5975 0.688487 TTTGACAAGTACCCCCTCCG 59.312 55.000 0.00 0.00 0.00 4.63
5109 5978 0.248565 GACAAGTACCCCCTCCGTTC 59.751 60.000 0.00 0.00 0.00 3.95
5110 5979 1.196766 ACAAGTACCCCCTCCGTTCC 61.197 60.000 0.00 0.00 0.00 3.62
5111 5980 0.908180 CAAGTACCCCCTCCGTTCCT 60.908 60.000 0.00 0.00 0.00 3.36
5112 5981 0.712380 AAGTACCCCCTCCGTTCCTA 59.288 55.000 0.00 0.00 0.00 2.94
5113 5982 0.712380 AGTACCCCCTCCGTTCCTAA 59.288 55.000 0.00 0.00 0.00 2.69
5114 5983 1.079323 AGTACCCCCTCCGTTCCTAAA 59.921 52.381 0.00 0.00 0.00 1.85
5115 5984 2.121948 GTACCCCCTCCGTTCCTAAAT 58.878 52.381 0.00 0.00 0.00 1.40
5116 5985 2.574074 ACCCCCTCCGTTCCTAAATA 57.426 50.000 0.00 0.00 0.00 1.40
5117 5986 3.070525 ACCCCCTCCGTTCCTAAATAT 57.929 47.619 0.00 0.00 0.00 1.28
5118 5987 4.217924 ACCCCCTCCGTTCCTAAATATA 57.782 45.455 0.00 0.00 0.00 0.86
5119 5988 4.569902 ACCCCCTCCGTTCCTAAATATAA 58.430 43.478 0.00 0.00 0.00 0.98
5120 5989 4.596212 ACCCCCTCCGTTCCTAAATATAAG 59.404 45.833 0.00 0.00 0.00 1.73
5121 5990 4.596212 CCCCCTCCGTTCCTAAATATAAGT 59.404 45.833 0.00 0.00 0.00 2.24
5122 5991 5.279859 CCCCCTCCGTTCCTAAATATAAGTC 60.280 48.000 0.00 0.00 0.00 3.01
5123 5992 5.543020 CCCCTCCGTTCCTAAATATAAGTCT 59.457 44.000 0.00 0.00 0.00 3.24
5124 5993 6.042897 CCCCTCCGTTCCTAAATATAAGTCTT 59.957 42.308 0.00 0.00 0.00 3.01
5125 5994 7.419865 CCCCTCCGTTCCTAAATATAAGTCTTT 60.420 40.741 0.00 0.00 0.00 2.52
5126 5995 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
5127 5996 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
5145 6014 9.646427 AGTCTTTGTAGAGATTTCACTATGAAC 57.354 33.333 0.00 0.00 35.89 3.18
5146 6015 8.874816 GTCTTTGTAGAGATTTCACTATGAACC 58.125 37.037 0.00 0.00 35.89 3.62
5147 6016 8.593679 TCTTTGTAGAGATTTCACTATGAACCA 58.406 33.333 0.00 0.00 35.89 3.67
5148 6017 8.547967 TTTGTAGAGATTTCACTATGAACCAC 57.452 34.615 0.00 0.00 35.89 4.16
5149 6018 7.239763 TGTAGAGATTTCACTATGAACCACA 57.760 36.000 0.00 0.00 35.89 4.17
5150 6019 7.851228 TGTAGAGATTTCACTATGAACCACAT 58.149 34.615 0.00 0.00 35.89 3.21
5151 6020 8.977412 TGTAGAGATTTCACTATGAACCACATA 58.023 33.333 0.00 0.00 35.89 2.29
5152 6021 9.250624 GTAGAGATTTCACTATGAACCACATAC 57.749 37.037 0.00 0.00 35.89 2.39
5153 6022 7.851228 AGAGATTTCACTATGAACCACATACA 58.149 34.615 0.00 0.00 35.89 2.29
5154 6023 7.984050 AGAGATTTCACTATGAACCACATACAG 59.016 37.037 0.00 0.00 35.89 2.74
5155 6024 7.851228 AGATTTCACTATGAACCACATACAGA 58.149 34.615 0.00 0.00 35.89 3.41
5156 6025 8.489489 AGATTTCACTATGAACCACATACAGAT 58.511 33.333 0.00 0.00 35.89 2.90
5157 6026 7.848223 TTTCACTATGAACCACATACAGATG 57.152 36.000 0.00 0.00 35.89 2.90
5158 6027 6.946340 TTCACTATGAACCACATACAGATGT 58.054 36.000 0.00 0.00 37.89 3.06
5159 6028 7.654022 TCACTATGAACCACATACAGATGTA 57.346 36.000 0.00 0.00 44.82 2.29
5160 6029 8.250143 TCACTATGAACCACATACAGATGTAT 57.750 34.615 0.00 0.00 44.82 2.29
5161 6030 9.362151 TCACTATGAACCACATACAGATGTATA 57.638 33.333 5.21 0.00 44.82 1.47
5183 6052 9.979270 GTATATAGATTCATTCATTTTGCTCCG 57.021 33.333 0.00 0.00 0.00 4.63
5184 6053 6.949352 ATAGATTCATTCATTTTGCTCCGT 57.051 33.333 0.00 0.00 0.00 4.69
5185 6054 5.649782 AGATTCATTCATTTTGCTCCGTT 57.350 34.783 0.00 0.00 0.00 4.44
5186 6055 6.029346 AGATTCATTCATTTTGCTCCGTTT 57.971 33.333 0.00 0.00 0.00 3.60
5187 6056 7.156876 AGATTCATTCATTTTGCTCCGTTTA 57.843 32.000 0.00 0.00 0.00 2.01
5188 6057 7.775120 AGATTCATTCATTTTGCTCCGTTTAT 58.225 30.769 0.00 0.00 0.00 1.40
5189 6058 8.902806 AGATTCATTCATTTTGCTCCGTTTATA 58.097 29.630 0.00 0.00 0.00 0.98
5190 6059 9.173939 GATTCATTCATTTTGCTCCGTTTATAG 57.826 33.333 0.00 0.00 0.00 1.31
5191 6060 7.624360 TCATTCATTTTGCTCCGTTTATAGT 57.376 32.000 0.00 0.00 0.00 2.12
5192 6061 7.693952 TCATTCATTTTGCTCCGTTTATAGTC 58.306 34.615 0.00 0.00 0.00 2.59
5193 6062 6.431198 TTCATTTTGCTCCGTTTATAGTCC 57.569 37.500 0.00 0.00 0.00 3.85
5194 6063 5.492895 TCATTTTGCTCCGTTTATAGTCCA 58.507 37.500 0.00 0.00 0.00 4.02
5195 6064 6.119536 TCATTTTGCTCCGTTTATAGTCCAT 58.880 36.000 0.00 0.00 0.00 3.41
5196 6065 7.276658 TCATTTTGCTCCGTTTATAGTCCATA 58.723 34.615 0.00 0.00 0.00 2.74
5197 6066 7.441157 TCATTTTGCTCCGTTTATAGTCCATAG 59.559 37.037 0.00 0.00 0.00 2.23
5198 6067 5.864418 TTGCTCCGTTTATAGTCCATAGT 57.136 39.130 0.00 0.00 0.00 2.12
5199 6068 5.196341 TGCTCCGTTTATAGTCCATAGTG 57.804 43.478 0.00 0.00 0.00 2.74
5200 6069 4.891168 TGCTCCGTTTATAGTCCATAGTGA 59.109 41.667 0.00 0.00 0.00 3.41
5201 6070 5.361571 TGCTCCGTTTATAGTCCATAGTGAA 59.638 40.000 0.00 0.00 0.00 3.18
5202 6071 6.127281 TGCTCCGTTTATAGTCCATAGTGAAA 60.127 38.462 0.00 0.00 0.00 2.69
5203 6072 6.929606 GCTCCGTTTATAGTCCATAGTGAAAT 59.070 38.462 0.00 0.00 0.00 2.17
5204 6073 7.116519 GCTCCGTTTATAGTCCATAGTGAAATC 59.883 40.741 0.00 0.00 0.00 2.17
5205 6074 8.246430 TCCGTTTATAGTCCATAGTGAAATCT 57.754 34.615 0.00 0.00 0.00 2.40
5206 6075 8.358148 TCCGTTTATAGTCCATAGTGAAATCTC 58.642 37.037 0.00 0.00 0.00 2.75
5207 6076 8.361139 CCGTTTATAGTCCATAGTGAAATCTCT 58.639 37.037 0.00 0.00 0.00 3.10
5214 6083 8.367660 AGTCCATAGTGAAATCTCTACAAAGA 57.632 34.615 0.00 0.00 0.00 2.52
5215 6084 8.254508 AGTCCATAGTGAAATCTCTACAAAGAC 58.745 37.037 0.00 0.00 0.00 3.01
5216 6085 8.254508 GTCCATAGTGAAATCTCTACAAAGACT 58.745 37.037 0.00 0.00 0.00 3.24
5217 6086 8.816894 TCCATAGTGAAATCTCTACAAAGACTT 58.183 33.333 0.00 0.00 0.00 3.01
5233 6102 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
5235 6104 8.818057 CAAAGACTTATATTTAGGAACGGAGTG 58.182 37.037 0.00 0.00 45.00 3.51
5236 6105 7.893124 AGACTTATATTTAGGAACGGAGTGA 57.107 36.000 0.00 0.00 45.00 3.41
5237 6106 7.942990 AGACTTATATTTAGGAACGGAGTGAG 58.057 38.462 0.00 0.00 45.00 3.51
5238 6107 7.560626 AGACTTATATTTAGGAACGGAGTGAGT 59.439 37.037 0.00 0.00 45.00 3.41
5239 6108 8.757982 ACTTATATTTAGGAACGGAGTGAGTA 57.242 34.615 0.00 0.00 45.00 2.59
5240 6109 8.848182 ACTTATATTTAGGAACGGAGTGAGTAG 58.152 37.037 0.00 0.00 45.00 2.57
5241 6110 8.985315 TTATATTTAGGAACGGAGTGAGTAGA 57.015 34.615 0.00 0.00 45.00 2.59
5242 6111 9.584008 TTATATTTAGGAACGGAGTGAGTAGAT 57.416 33.333 0.00 0.00 45.00 1.98
5244 6113 6.939132 TTTAGGAACGGAGTGAGTAGATAG 57.061 41.667 0.00 0.00 45.00 2.08
5245 6114 3.215975 AGGAACGGAGTGAGTAGATAGC 58.784 50.000 0.00 0.00 45.00 2.97
5246 6115 3.117813 AGGAACGGAGTGAGTAGATAGCT 60.118 47.826 0.00 0.00 45.00 3.32
5247 6116 3.633065 GGAACGGAGTGAGTAGATAGCTT 59.367 47.826 0.00 0.00 45.00 3.74
5248 6117 4.261280 GGAACGGAGTGAGTAGATAGCTTC 60.261 50.000 0.00 0.00 45.00 3.86
5249 6118 4.159244 ACGGAGTGAGTAGATAGCTTCT 57.841 45.455 0.00 0.00 42.51 2.85
5250 6119 4.528920 ACGGAGTGAGTAGATAGCTTCTT 58.471 43.478 0.00 0.00 42.51 2.52
5251 6120 4.951094 ACGGAGTGAGTAGATAGCTTCTTT 59.049 41.667 0.00 0.00 42.51 2.52
5252 6121 5.163602 ACGGAGTGAGTAGATAGCTTCTTTG 60.164 44.000 0.00 0.00 42.51 2.77
5272 6141 1.275010 GCCCCTTGTTGGTTGTAATGG 59.725 52.381 0.00 0.00 0.00 3.16
5276 6145 3.761752 CCCTTGTTGGTTGTAATGGGTAG 59.238 47.826 0.00 0.00 0.00 3.18
5281 6150 4.146564 GTTGGTTGTAATGGGTAGTGGTT 58.853 43.478 0.00 0.00 0.00 3.67
5285 6154 4.324022 GGTTGTAATGGGTAGTGGTTAGCT 60.324 45.833 0.00 0.00 0.00 3.32
5286 6155 4.481368 TGTAATGGGTAGTGGTTAGCTG 57.519 45.455 0.00 0.00 0.00 4.24
5342 6214 5.697473 TTGAAACGTTCAATATGCTGGAA 57.303 34.783 0.00 0.00 44.21 3.53
5343 6215 5.295431 TGAAACGTTCAATATGCTGGAAG 57.705 39.130 0.00 0.00 36.59 3.46
5361 6233 6.166984 TGGAAGCTGAGATAGTATTGAAGG 57.833 41.667 0.00 0.00 0.00 3.46
5363 6235 6.556495 TGGAAGCTGAGATAGTATTGAAGGAT 59.444 38.462 0.00 0.00 0.00 3.24
5364 6236 7.096551 GGAAGCTGAGATAGTATTGAAGGATC 58.903 42.308 0.00 0.00 0.00 3.36
5369 6241 7.930865 GCTGAGATAGTATTGAAGGATCTGTTT 59.069 37.037 0.00 0.00 0.00 2.83
5386 6258 8.797438 GGATCTGTTTTCTTCATTACTTCCTTT 58.203 33.333 0.00 0.00 0.00 3.11
5408 6287 8.097662 CCTTTCTTCTGAAATACTACCTCTGTT 58.902 37.037 0.00 0.00 40.85 3.16
5409 6288 9.495572 CTTTCTTCTGAAATACTACCTCTGTTT 57.504 33.333 0.00 0.00 40.85 2.83
5412 6291 9.085645 TCTTCTGAAATACTACCTCTGTTTACA 57.914 33.333 0.00 0.00 0.00 2.41
5417 6296 8.726988 TGAAATACTACCTCTGTTTACAAATGC 58.273 33.333 0.00 0.00 0.00 3.56
5418 6297 8.863872 AAATACTACCTCTGTTTACAAATGCT 57.136 30.769 0.00 0.00 0.00 3.79
5419 6298 7.849804 ATACTACCTCTGTTTACAAATGCTG 57.150 36.000 0.00 0.00 0.00 4.41
5420 6299 3.923017 ACCTCTGTTTACAAATGCTGC 57.077 42.857 0.00 0.00 0.00 5.25
5423 6302 4.099266 ACCTCTGTTTACAAATGCTGCAAA 59.901 37.500 6.36 0.00 0.00 3.68
5424 6303 5.049167 CCTCTGTTTACAAATGCTGCAAAA 58.951 37.500 6.36 0.00 0.00 2.44
5425 6304 5.523188 CCTCTGTTTACAAATGCTGCAAAAA 59.477 36.000 6.36 0.13 0.00 1.94
5427 6306 6.946165 TCTGTTTACAAATGCTGCAAAAATG 58.054 32.000 6.36 6.12 0.00 2.32
5433 6339 9.495754 TTTACAAATGCTGCAAAAATGTTTTAC 57.504 25.926 6.36 0.00 0.00 2.01
5449 6355 7.972832 ATGTTTTACATTTACGAACAGAGGA 57.027 32.000 0.00 0.00 34.67 3.71
5450 6356 7.972832 TGTTTTACATTTACGAACAGAGGAT 57.027 32.000 0.00 0.00 0.00 3.24
5459 6365 4.175787 ACGAACAGAGGATGTAGTTGAC 57.824 45.455 0.00 0.00 43.00 3.18
5467 6373 7.324178 ACAGAGGATGTAGTTGACAACTATTC 58.676 38.462 26.52 23.65 45.05 1.75
5468 6374 6.758886 CAGAGGATGTAGTTGACAACTATTCC 59.241 42.308 30.49 30.49 45.05 3.01
5469 6375 6.875972 AGGATGTAGTTGACAACTATTCCT 57.124 37.500 32.46 32.46 45.22 3.36
5470 6376 6.644347 AGGATGTAGTTGACAACTATTCCTG 58.356 40.000 34.60 0.00 46.56 3.86
5473 6379 6.599356 TGTAGTTGACAACTATTCCTGCTA 57.401 37.500 26.52 4.65 45.05 3.49
5476 6382 6.992063 AGTTGACAACTATTCCTGCTATTG 57.008 37.500 19.28 0.00 40.69 1.90
5478 6384 6.942576 AGTTGACAACTATTCCTGCTATTGTT 59.057 34.615 19.28 0.00 40.69 2.83
5479 6385 6.741992 TGACAACTATTCCTGCTATTGTTG 57.258 37.500 0.00 0.00 41.38 3.33
5480 6386 6.237901 TGACAACTATTCCTGCTATTGTTGT 58.762 36.000 12.98 12.98 46.73 3.32
5481 6387 6.743575 ACAACTATTCCTGCTATTGTTGTC 57.256 37.500 9.04 0.00 43.44 3.18
5482 6388 6.476378 ACAACTATTCCTGCTATTGTTGTCT 58.524 36.000 9.04 0.00 43.44 3.41
5483 6389 6.942576 ACAACTATTCCTGCTATTGTTGTCTT 59.057 34.615 9.04 0.00 43.44 3.01
5484 6390 6.992063 ACTATTCCTGCTATTGTTGTCTTG 57.008 37.500 0.00 0.00 0.00 3.02
5485 6391 5.882557 ACTATTCCTGCTATTGTTGTCTTGG 59.117 40.000 0.00 0.00 0.00 3.61
5486 6392 3.788227 TCCTGCTATTGTTGTCTTGGT 57.212 42.857 0.00 0.00 0.00 3.67
5487 6393 3.674997 TCCTGCTATTGTTGTCTTGGTC 58.325 45.455 0.00 0.00 0.00 4.02
5488 6394 3.072330 TCCTGCTATTGTTGTCTTGGTCA 59.928 43.478 0.00 0.00 0.00 4.02
5495 6401 5.850557 ATTGTTGTCTTGGTCACATTGAA 57.149 34.783 0.00 0.00 0.00 2.69
5501 6407 5.563592 TGTCTTGGTCACATTGAAGATCAT 58.436 37.500 0.00 0.00 0.00 2.45
5502 6408 5.413523 TGTCTTGGTCACATTGAAGATCATG 59.586 40.000 0.00 0.00 0.00 3.07
5504 6410 5.645067 TCTTGGTCACATTGAAGATCATGAC 59.355 40.000 0.00 4.70 34.73 3.06
5505 6411 4.909001 TGGTCACATTGAAGATCATGACA 58.091 39.130 0.00 0.00 36.27 3.58
5506 6412 5.503002 TGGTCACATTGAAGATCATGACAT 58.497 37.500 0.00 0.00 36.27 3.06
5507 6413 6.652053 TGGTCACATTGAAGATCATGACATA 58.348 36.000 0.00 2.01 36.27 2.29
5508 6414 7.111466 TGGTCACATTGAAGATCATGACATAA 58.889 34.615 0.00 0.00 36.27 1.90
5509 6415 7.611079 TGGTCACATTGAAGATCATGACATAAA 59.389 33.333 0.00 0.00 36.27 1.40
5510 6416 8.627403 GGTCACATTGAAGATCATGACATAAAT 58.373 33.333 0.00 0.00 36.27 1.40
5537 6443 8.183104 TGTCAACCACCAATATAAAATGACAA 57.817 30.769 0.00 0.00 40.94 3.18
5571 6477 9.665719 AAACATTCATACAAAAACCAAAGTCTT 57.334 25.926 0.00 0.00 0.00 3.01
5572 6478 8.871686 ACATTCATACAAAAACCAAAGTCTTC 57.128 30.769 0.00 0.00 0.00 2.87
5595 6501 8.437274 TTCTTTCACTAAATTCTACTCCCTCT 57.563 34.615 0.00 0.00 0.00 3.69
5599 6505 7.883391 TCACTAAATTCTACTCCCTCTGTAG 57.117 40.000 0.00 0.00 38.85 2.74
5600 6506 7.411808 TCACTAAATTCTACTCCCTCTGTAGT 58.588 38.462 0.00 0.00 38.67 2.73
5602 6508 7.122948 CACTAAATTCTACTCCCTCTGTAGTGT 59.877 40.741 0.00 0.00 38.67 3.55
5603 6509 6.532988 AAATTCTACTCCCTCTGTAGTGTC 57.467 41.667 0.00 0.00 38.67 3.67
5605 6511 4.652679 TCTACTCCCTCTGTAGTGTCAA 57.347 45.455 0.00 0.00 38.67 3.18
5607 6513 5.391256 TCTACTCCCTCTGTAGTGTCAAAA 58.609 41.667 0.00 0.00 38.67 2.44
5609 6515 4.704965 ACTCCCTCTGTAGTGTCAAAAAC 58.295 43.478 0.00 0.00 0.00 2.43
5610 6516 4.409247 ACTCCCTCTGTAGTGTCAAAAACT 59.591 41.667 0.00 0.00 0.00 2.66
5611 6517 4.957296 TCCCTCTGTAGTGTCAAAAACTC 58.043 43.478 0.00 0.00 0.00 3.01
5612 6518 4.654262 TCCCTCTGTAGTGTCAAAAACTCT 59.346 41.667 0.00 0.00 35.87 3.24
5613 6519 5.836898 TCCCTCTGTAGTGTCAAAAACTCTA 59.163 40.000 0.00 0.00 33.82 2.43
5614 6520 6.497259 TCCCTCTGTAGTGTCAAAAACTCTAT 59.503 38.462 0.00 0.00 36.60 1.98
5616 6522 8.311836 CCCTCTGTAGTGTCAAAAACTCTATTA 58.688 37.037 0.00 0.00 36.60 0.98
5655 6651 6.013293 AGGGAGTATCTAACAAGAAGTTGCTT 60.013 38.462 0.00 0.00 41.50 3.91
5677 6673 7.228507 TGCTTATACATGGAAATACATTTCGCT 59.771 33.333 8.24 0.00 45.37 4.93
5720 6716 7.944729 ACTTCAGCAAAATTAGTCCATACAT 57.055 32.000 0.00 0.00 0.00 2.29
5772 6768 2.824936 CAATGGGACCTTGCACATTACA 59.175 45.455 0.00 0.00 32.71 2.41
5773 6769 1.904287 TGGGACCTTGCACATTACAC 58.096 50.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.665719 TCAATTGTGTATTGTAGATGTGTACAT 57.334 29.630 5.13 0.00 43.41 2.29
33 34 8.791675 TGCATTTTCTCTCAATTGTGTATTGTA 58.208 29.630 5.13 0.00 43.41 2.41
37 38 7.318141 CCTTGCATTTTCTCTCAATTGTGTAT 58.682 34.615 5.13 0.00 0.00 2.29
45 48 2.957680 TGTGCCTTGCATTTTCTCTCAA 59.042 40.909 0.00 0.00 41.91 3.02
47 50 2.555757 AGTGTGCCTTGCATTTTCTCTC 59.444 45.455 0.00 0.00 41.91 3.20
53 56 1.962807 TGCTAAGTGTGCCTTGCATTT 59.037 42.857 0.00 0.00 41.91 2.32
56 59 0.883153 CATGCTAAGTGTGCCTTGCA 59.117 50.000 0.00 0.00 39.66 4.08
125 129 6.582437 TCGCAAAGAAAAAGTTTTGGATTC 57.418 33.333 0.61 0.00 35.40 2.52
157 161 5.741388 ATTATGCGACAGATTTGGACTTC 57.259 39.130 0.00 0.00 0.00 3.01
169 173 8.973835 TCACGTTGATATAATATTATGCGACA 57.026 30.769 16.72 9.05 0.00 4.35
182 187 5.652518 TCCACGACAATTCACGTTGATATA 58.347 37.500 4.08 0.00 40.76 0.86
185 190 2.736721 CTCCACGACAATTCACGTTGAT 59.263 45.455 4.08 0.00 40.76 2.57
190 195 3.057019 TCTTTCTCCACGACAATTCACG 58.943 45.455 0.00 0.00 0.00 4.35
199 204 6.218019 TCTTCGTATTTTTCTTTCTCCACGA 58.782 36.000 0.00 0.00 0.00 4.35
202 207 8.615878 TTCATCTTCGTATTTTTCTTTCTCCA 57.384 30.769 0.00 0.00 0.00 3.86
203 208 7.694367 GCTTCATCTTCGTATTTTTCTTTCTCC 59.306 37.037 0.00 0.00 0.00 3.71
211 216 6.312399 TGTGTGCTTCATCTTCGTATTTTT 57.688 33.333 0.00 0.00 0.00 1.94
215 220 5.412594 ACAAATGTGTGCTTCATCTTCGTAT 59.587 36.000 0.00 0.00 36.31 3.06
242 247 8.531146 TCTTGAAGGATTTGTGTTTCTTTTTCT 58.469 29.630 0.00 0.00 0.00 2.52
243 248 8.595533 GTCTTGAAGGATTTGTGTTTCTTTTTC 58.404 33.333 0.00 0.00 0.00 2.29
245 250 7.610865 TGTCTTGAAGGATTTGTGTTTCTTTT 58.389 30.769 0.00 0.00 0.00 2.27
246 251 7.169158 TGTCTTGAAGGATTTGTGTTTCTTT 57.831 32.000 0.00 0.00 0.00 2.52
248 253 6.322201 ACATGTCTTGAAGGATTTGTGTTTCT 59.678 34.615 0.00 0.00 0.00 2.52
249 254 6.507023 ACATGTCTTGAAGGATTTGTGTTTC 58.493 36.000 0.00 0.00 0.00 2.78
250 255 6.469782 ACATGTCTTGAAGGATTTGTGTTT 57.530 33.333 0.00 0.00 0.00 2.83
251 256 6.469782 AACATGTCTTGAAGGATTTGTGTT 57.530 33.333 0.00 0.00 0.00 3.32
252 257 7.765695 ATAACATGTCTTGAAGGATTTGTGT 57.234 32.000 0.00 0.00 0.00 3.72
253 258 9.941664 GATATAACATGTCTTGAAGGATTTGTG 57.058 33.333 0.00 0.00 0.00 3.33
261 266 9.258826 CAGGAGAAGATATAACATGTCTTGAAG 57.741 37.037 0.00 0.00 40.24 3.02
283 288 2.808906 TCTCGACCAGATCTTCAGGA 57.191 50.000 4.64 0.00 0.00 3.86
284 289 3.876274 TTTCTCGACCAGATCTTCAGG 57.124 47.619 0.00 0.00 0.00 3.86
286 291 4.039245 AGTGTTTTCTCGACCAGATCTTCA 59.961 41.667 0.00 0.00 0.00 3.02
287 292 4.561105 AGTGTTTTCTCGACCAGATCTTC 58.439 43.478 0.00 0.00 0.00 2.87
294 300 4.340097 TCTTCACTAGTGTTTTCTCGACCA 59.660 41.667 21.99 0.00 0.00 4.02
344 351 9.917129 GCTTCTCTAGTAAGTTATCCTTTATCC 57.083 37.037 8.65 0.00 34.46 2.59
347 354 8.834004 TGGCTTCTCTAGTAAGTTATCCTTTA 57.166 34.615 8.65 0.00 34.46 1.85
348 355 7.735326 TGGCTTCTCTAGTAAGTTATCCTTT 57.265 36.000 8.65 0.00 34.46 3.11
352 359 7.592164 GTCGATTGGCTTCTCTAGTAAGTTATC 59.408 40.741 0.00 8.06 0.00 1.75
366 373 3.814945 CAAAGTCTTGTCGATTGGCTTC 58.185 45.455 0.00 0.00 0.00 3.86
367 374 2.030805 GCAAAGTCTTGTCGATTGGCTT 60.031 45.455 0.00 0.00 34.79 4.35
377 384 3.963428 AGTAGATCGGCAAAGTCTTGT 57.037 42.857 0.00 0.00 34.79 3.16
378 385 3.619038 GGAAGTAGATCGGCAAAGTCTTG 59.381 47.826 0.00 0.00 35.49 3.02
387 395 2.981859 TTCTTGGGAAGTAGATCGGC 57.018 50.000 0.00 0.00 0.00 5.54
389 397 5.915758 CGTTCTATTCTTGGGAAGTAGATCG 59.084 44.000 0.00 0.00 34.16 3.69
398 406 5.932303 CAGTTTTCTCGTTCTATTCTTGGGA 59.068 40.000 0.00 0.00 0.00 4.37
401 409 6.202954 ACCACAGTTTTCTCGTTCTATTCTTG 59.797 38.462 0.00 0.00 0.00 3.02
406 414 5.209818 TCACCACAGTTTTCTCGTTCTAT 57.790 39.130 0.00 0.00 0.00 1.98
407 415 4.659111 TCACCACAGTTTTCTCGTTCTA 57.341 40.909 0.00 0.00 0.00 2.10
408 416 3.536956 TCACCACAGTTTTCTCGTTCT 57.463 42.857 0.00 0.00 0.00 3.01
413 421 2.676342 ACGTGTTCACCACAGTTTTCTC 59.324 45.455 0.00 0.00 44.78 2.87
414 422 2.706890 ACGTGTTCACCACAGTTTTCT 58.293 42.857 0.00 0.00 44.78 2.52
415 423 4.806342 ATACGTGTTCACCACAGTTTTC 57.194 40.909 0.00 0.00 44.78 2.29
416 424 5.276963 CGTAATACGTGTTCACCACAGTTTT 60.277 40.000 0.00 0.00 44.78 2.43
419 427 3.004629 TCGTAATACGTGTTCACCACAGT 59.995 43.478 12.78 0.00 44.78 3.55
420 428 3.567530 TCGTAATACGTGTTCACCACAG 58.432 45.455 12.78 0.00 44.78 3.66
421 429 3.639716 TCGTAATACGTGTTCACCACA 57.360 42.857 12.78 0.00 44.78 4.17
430 438 4.733887 GGAGTGTTCAGATCGTAATACGTG 59.266 45.833 12.78 4.24 43.14 4.49
436 444 3.830178 TCAAGGGAGTGTTCAGATCGTAA 59.170 43.478 0.00 0.00 0.00 3.18
444 452 3.244887 TCTCTCTCAAGGGAGTGTTCA 57.755 47.619 6.79 0.00 42.05 3.18
449 457 2.241176 AGTCGATCTCTCTCAAGGGAGT 59.759 50.000 6.79 0.00 42.05 3.85
451 459 2.422235 GGAGTCGATCTCTCTCAAGGGA 60.422 54.545 12.62 0.00 42.40 4.20
453 461 1.953686 GGGAGTCGATCTCTCTCAAGG 59.046 57.143 12.62 0.00 40.34 3.61
462 470 3.698289 TGTTTACAGAGGGAGTCGATCT 58.302 45.455 0.00 0.00 0.00 2.75
467 475 9.535878 CTCTTATATTTGTTTACAGAGGGAGTC 57.464 37.037 0.00 0.00 0.00 3.36
468 476 7.988028 GCTCTTATATTTGTTTACAGAGGGAGT 59.012 37.037 0.00 0.00 0.00 3.85
469 477 7.169982 CGCTCTTATATTTGTTTACAGAGGGAG 59.830 40.741 4.76 0.00 36.40 4.30
470 478 6.984474 CGCTCTTATATTTGTTTACAGAGGGA 59.016 38.462 4.76 0.00 36.40 4.20
471 479 6.761714 ACGCTCTTATATTTGTTTACAGAGGG 59.238 38.462 8.36 8.36 38.95 4.30
472 480 7.772332 ACGCTCTTATATTTGTTTACAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
480 488 9.601217 AGTGATCTAAACGCTCTTATATTTGTT 57.399 29.630 0.00 0.00 0.00 2.83
486 494 9.117183 TGAAGTAGTGATCTAAACGCTCTTATA 57.883 33.333 0.00 0.00 0.00 0.98
487 495 7.997482 TGAAGTAGTGATCTAAACGCTCTTAT 58.003 34.615 0.00 0.00 0.00 1.73
488 496 7.120873 ACTGAAGTAGTGATCTAAACGCTCTTA 59.879 37.037 0.00 0.00 38.49 2.10
489 497 6.071840 ACTGAAGTAGTGATCTAAACGCTCTT 60.072 38.462 0.00 0.00 38.49 2.85
490 498 5.416326 ACTGAAGTAGTGATCTAAACGCTCT 59.584 40.000 0.00 0.00 38.49 4.09
491 499 5.642686 ACTGAAGTAGTGATCTAAACGCTC 58.357 41.667 0.00 0.00 38.49 5.03
492 500 5.646577 ACTGAAGTAGTGATCTAAACGCT 57.353 39.130 0.00 0.00 38.49 5.07
504 512 6.672266 TCCTTGAAAGATCACTGAAGTAGT 57.328 37.500 0.00 0.00 41.36 2.73
505 513 6.538021 CCATCCTTGAAAGATCACTGAAGTAG 59.462 42.308 0.00 0.00 34.61 2.57
506 514 6.213397 TCCATCCTTGAAAGATCACTGAAGTA 59.787 38.462 0.00 0.00 34.61 2.24
507 515 5.013495 TCCATCCTTGAAAGATCACTGAAGT 59.987 40.000 0.00 0.00 34.61 3.01
508 516 5.494724 TCCATCCTTGAAAGATCACTGAAG 58.505 41.667 0.00 0.00 34.61 3.02
509 517 5.013495 ACTCCATCCTTGAAAGATCACTGAA 59.987 40.000 0.00 0.00 34.61 3.02
510 518 4.533707 ACTCCATCCTTGAAAGATCACTGA 59.466 41.667 0.00 0.00 34.61 3.41
511 519 4.841422 ACTCCATCCTTGAAAGATCACTG 58.159 43.478 0.00 0.00 34.61 3.66
512 520 5.485353 TGTACTCCATCCTTGAAAGATCACT 59.515 40.000 0.00 0.00 34.61 3.41
513 521 5.734720 TGTACTCCATCCTTGAAAGATCAC 58.265 41.667 0.00 0.00 34.61 3.06
514 522 6.156775 TCATGTACTCCATCCTTGAAAGATCA 59.843 38.462 0.00 0.00 0.00 2.92
515 523 6.586344 TCATGTACTCCATCCTTGAAAGATC 58.414 40.000 0.00 0.00 0.00 2.75
516 524 6.385176 TCTCATGTACTCCATCCTTGAAAGAT 59.615 38.462 0.00 0.00 0.00 2.40
517 525 5.721480 TCTCATGTACTCCATCCTTGAAAGA 59.279 40.000 0.00 0.00 0.00 2.52
518 526 5.982356 TCTCATGTACTCCATCCTTGAAAG 58.018 41.667 0.00 0.00 0.00 2.62
519 527 6.173339 GTTCTCATGTACTCCATCCTTGAAA 58.827 40.000 0.00 0.00 0.00 2.69
520 528 5.248248 TGTTCTCATGTACTCCATCCTTGAA 59.752 40.000 0.00 0.00 0.00 2.69
521 529 4.777366 TGTTCTCATGTACTCCATCCTTGA 59.223 41.667 0.00 0.00 0.00 3.02
522 530 5.089970 TGTTCTCATGTACTCCATCCTTG 57.910 43.478 0.00 0.00 0.00 3.61
523 531 5.762179 TTGTTCTCATGTACTCCATCCTT 57.238 39.130 0.00 0.00 0.00 3.36
524 532 5.762179 TTTGTTCTCATGTACTCCATCCT 57.238 39.130 0.00 0.00 0.00 3.24
525 533 5.940470 ACTTTTGTTCTCATGTACTCCATCC 59.060 40.000 0.00 0.00 0.00 3.51
526 534 6.621596 GCACTTTTGTTCTCATGTACTCCATC 60.622 42.308 0.00 0.00 0.00 3.51
527 535 5.182001 GCACTTTTGTTCTCATGTACTCCAT 59.818 40.000 0.00 0.00 0.00 3.41
528 536 4.515191 GCACTTTTGTTCTCATGTACTCCA 59.485 41.667 0.00 0.00 0.00 3.86
529 537 4.083271 GGCACTTTTGTTCTCATGTACTCC 60.083 45.833 0.00 0.00 0.00 3.85
530 538 4.377431 CGGCACTTTTGTTCTCATGTACTC 60.377 45.833 0.00 0.00 0.00 2.59
531 539 3.498397 CGGCACTTTTGTTCTCATGTACT 59.502 43.478 0.00 0.00 0.00 2.73
532 540 3.364964 CCGGCACTTTTGTTCTCATGTAC 60.365 47.826 0.00 0.00 0.00 2.90
536 544 1.247567 CCCGGCACTTTTGTTCTCAT 58.752 50.000 0.00 0.00 0.00 2.90
617 633 7.907841 TCCAGTAGATACTTACAAAGGCATA 57.092 36.000 0.00 0.00 33.46 3.14
618 634 6.808321 TCCAGTAGATACTTACAAAGGCAT 57.192 37.500 0.00 0.00 33.46 4.40
620 636 7.389607 TGTTTTCCAGTAGATACTTACAAAGGC 59.610 37.037 0.00 0.00 33.46 4.35
704 722 4.419282 AGGGTGGTTGAATGTGAATGAAT 58.581 39.130 0.00 0.00 0.00 2.57
775 793 2.079925 GTCCAGGCAGATCAACAAGAC 58.920 52.381 0.00 0.00 0.00 3.01
776 794 1.699083 TGTCCAGGCAGATCAACAAGA 59.301 47.619 0.00 0.00 0.00 3.02
777 795 2.189594 TGTCCAGGCAGATCAACAAG 57.810 50.000 0.00 0.00 0.00 3.16
778 796 2.040145 TCATGTCCAGGCAGATCAACAA 59.960 45.455 0.00 0.00 0.00 2.83
779 797 1.629861 TCATGTCCAGGCAGATCAACA 59.370 47.619 0.00 0.00 0.00 3.33
789 807 1.755959 CTCTCCTGACTCATGTCCAGG 59.244 57.143 18.25 18.25 42.28 4.45
797 815 1.425448 TGTCACTCCTCTCCTGACTCA 59.575 52.381 0.00 0.00 36.15 3.41
811 830 2.520536 GGCCCACCTGTCTGTCACT 61.521 63.158 0.00 0.00 0.00 3.41
910 950 1.202806 CGATCTCCTCTCCTCTGCTCT 60.203 57.143 0.00 0.00 0.00 4.09
911 951 1.202758 TCGATCTCCTCTCCTCTGCTC 60.203 57.143 0.00 0.00 0.00 4.26
912 952 0.843309 TCGATCTCCTCTCCTCTGCT 59.157 55.000 0.00 0.00 0.00 4.24
913 953 1.686355 TTCGATCTCCTCTCCTCTGC 58.314 55.000 0.00 0.00 0.00 4.26
914 954 3.255642 GGATTTCGATCTCCTCTCCTCTG 59.744 52.174 6.54 0.00 0.00 3.35
919 959 2.288763 GGCTGGATTTCGATCTCCTCTC 60.289 54.545 13.25 4.53 32.47 3.20
1358 1425 2.189594 TGAAGATGTTGGACTGCAGG 57.810 50.000 19.93 0.00 0.00 4.85
1512 1582 1.399791 GGAATGTAAGCAGCAGCACTC 59.600 52.381 3.17 0.00 45.49 3.51
1692 1772 2.093553 CCAAAGAAGAGAGAGGAGCAGG 60.094 54.545 0.00 0.00 0.00 4.85
1746 1877 6.206634 TGTTCCAAAATCTTACTGTCATCCAC 59.793 38.462 0.00 0.00 0.00 4.02
1844 1990 3.567797 GCGCTGAGGACCGAATGC 61.568 66.667 0.00 0.00 0.00 3.56
1863 2014 3.286353 TGCATCCGAAATCTGCCAATTA 58.714 40.909 0.00 0.00 35.02 1.40
1870 2021 3.002042 CAGTAAGCTGCATCCGAAATCTG 59.998 47.826 1.02 0.00 35.77 2.90
1891 2042 2.092429 AGACCAAGACAAACAGGAAGCA 60.092 45.455 0.00 0.00 0.00 3.91
1892 2043 2.291741 CAGACCAAGACAAACAGGAAGC 59.708 50.000 0.00 0.00 0.00 3.86
1893 2044 3.808728 TCAGACCAAGACAAACAGGAAG 58.191 45.455 0.00 0.00 0.00 3.46
1960 2117 7.997773 AAAGGGGACAGAAGACTAAATAAAC 57.002 36.000 0.00 0.00 0.00 2.01
1999 2317 3.604582 TGCATCATGAACGTTATGTGGA 58.395 40.909 0.00 5.83 0.00 4.02
2314 2676 5.066764 CCCTCTAGAGCTAGTCACAAAGTAC 59.933 48.000 14.73 0.00 34.84 2.73
2358 2720 5.121142 GGCAAGCAACAACGTAGAGTAATAA 59.879 40.000 0.00 0.00 0.00 1.40
2364 2726 1.512926 AGGCAAGCAACAACGTAGAG 58.487 50.000 0.00 0.00 0.00 2.43
2365 2727 1.601903 CAAGGCAAGCAACAACGTAGA 59.398 47.619 0.00 0.00 0.00 2.59
2632 3000 5.079689 ACAATTGCTGAAATGATGCATGA 57.920 34.783 2.46 0.00 36.55 3.07
2638 3006 9.715121 AATAAAACAGACAATTGCTGAAATGAT 57.285 25.926 26.27 14.52 36.86 2.45
2786 3154 7.468084 GCAAAGTAAATAGCATCCGGATAAACA 60.468 37.037 18.63 3.00 0.00 2.83
2792 3160 3.211045 GGCAAAGTAAATAGCATCCGGA 58.789 45.455 6.61 6.61 0.00 5.14
3017 3399 3.575805 AGAAAGGATCAGGGCAACAAAA 58.424 40.909 0.00 0.00 39.74 2.44
3046 3428 8.513774 CCAAATTAAGGTTAAATGCAAGCAATT 58.486 29.630 0.00 0.00 0.00 2.32
3121 3505 9.406828 GGTACCAACTGACAAGATTAATTTTTC 57.593 33.333 7.15 0.00 0.00 2.29
3341 3726 8.648097 CGATATTAGGACATAATACACTGCAAC 58.352 37.037 1.85 0.00 38.79 4.17
3393 3778 4.098155 TGTACAGGAACTAAGGGCATGTA 58.902 43.478 0.00 0.00 36.02 2.29
3443 3828 6.852345 GTGCAATCAAATGAAACATTTGAACC 59.148 34.615 29.95 23.05 46.84 3.62
3452 3837 6.643770 AGAACATCTGTGCAATCAAATGAAAC 59.356 34.615 0.00 0.00 0.00 2.78
3518 3903 7.383687 TGACGAAACTACAATAGAATCCAACT 58.616 34.615 0.00 0.00 0.00 3.16
3589 3974 4.783764 TCAGACTTGCGATTGAACTAGA 57.216 40.909 0.00 0.00 0.00 2.43
3606 3991 8.062065 ACAAATTCAAAACCTTACTGTTCAGA 57.938 30.769 6.83 0.00 0.00 3.27
3635 4020 8.664669 AGAAGACCAAATAACCAATTAACCAT 57.335 30.769 0.00 0.00 0.00 3.55
3654 4124 5.455056 TTCAGACTACCACTGAAGAAGAC 57.545 43.478 0.00 0.00 45.44 3.01
3700 4183 9.643693 AGGTTTGCACTATCAAAATAGAAATTG 57.356 29.630 0.00 0.00 38.61 2.32
3721 4204 7.099764 CAGAGTGTGACAACTATATGAGGTTT 58.900 38.462 0.00 0.00 0.00 3.27
3724 4207 5.127845 ACCAGAGTGTGACAACTATATGAGG 59.872 44.000 0.00 0.00 0.00 3.86
3741 4224 8.890718 GTTTTAACAAGAGAAAACTACCAGAGT 58.109 33.333 3.59 0.00 40.69 3.24
3794 4368 4.219944 CCATGATTCCATTATGCCAAGGAG 59.780 45.833 0.00 0.00 0.00 3.69
3798 4372 2.633967 GCCCATGATTCCATTATGCCAA 59.366 45.455 0.00 0.00 0.00 4.52
3814 4388 6.710278 ACAGCATTAACAAAAATAAGCCCAT 58.290 32.000 0.00 0.00 0.00 4.00
3815 4389 6.107901 ACAGCATTAACAAAAATAAGCCCA 57.892 33.333 0.00 0.00 0.00 5.36
3891 4465 2.960384 TGCATCCCAATCTGCTTAATGG 59.040 45.455 0.00 0.00 39.16 3.16
3954 4534 4.751600 CGAATGAGTAGCAGCCATCATTTA 59.248 41.667 15.06 0.00 41.27 1.40
3970 4556 4.366586 TCTGCAGAGCTTAATCGAATGAG 58.633 43.478 13.74 0.00 0.00 2.90
4032 4618 1.198637 GAGAAGCGCATCAGTTTTGCT 59.801 47.619 15.84 0.00 37.96 3.91
4061 4647 5.447624 AAAATAACAGCACGGTAGCTTTT 57.552 34.783 0.00 5.98 43.70 2.27
4065 4652 4.083484 ACAGAAAAATAACAGCACGGTAGC 60.083 41.667 0.00 0.00 0.00 3.58
4070 4657 5.794945 CCATACACAGAAAAATAACAGCACG 59.205 40.000 0.00 0.00 0.00 5.34
4121 4708 7.013083 GGTATACTCTCATCAGTTAAGTTCGGA 59.987 40.741 2.25 0.00 0.00 4.55
4371 5238 8.481314 AGATCAGATGTGAAAGTATAAAGCTGA 58.519 33.333 0.00 0.00 35.88 4.26
4430 5297 7.370383 ACAACAACAAGCTAAATTACCATGAG 58.630 34.615 0.00 0.00 0.00 2.90
4805 5672 5.496556 ACCGACATACCATGAAAGAATTGA 58.503 37.500 0.00 0.00 0.00 2.57
4879 5747 5.348997 GGATACGTTCAAGGTTCTCTGAAAG 59.651 44.000 0.00 0.00 0.00 2.62
4893 5761 2.147958 GTTTGTGCCAGGATACGTTCA 58.852 47.619 0.00 0.00 46.39 3.18
5033 5902 7.092802 TGTTTATACTACCCAGCTTATTCACCA 60.093 37.037 0.00 0.00 0.00 4.17
5051 5920 3.365969 GCCACCAGCACAACTGTTTATAC 60.366 47.826 0.00 0.00 45.68 1.47
5066 5935 0.466189 AAACTCACACCAGCCACCAG 60.466 55.000 0.00 0.00 0.00 4.00
5069 5938 1.102978 AACAAACTCACACCAGCCAC 58.897 50.000 0.00 0.00 0.00 5.01
5071 5940 1.748493 TCAAACAAACTCACACCAGCC 59.252 47.619 0.00 0.00 0.00 4.85
5072 5941 2.163412 TGTCAAACAAACTCACACCAGC 59.837 45.455 0.00 0.00 0.00 4.85
5082 5951 3.293337 AGGGGGTACTTGTCAAACAAAC 58.707 45.455 0.00 0.00 37.69 2.93
5098 5967 4.596212 ACTTATATTTAGGAACGGAGGGGG 59.404 45.833 0.00 0.00 0.00 5.40
5099 5968 5.543020 AGACTTATATTTAGGAACGGAGGGG 59.457 44.000 0.00 0.00 0.00 4.79
5100 5969 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5101 5970 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
5102 5971 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
5119 5988 9.646427 GTTCATAGTGAAATCTCTACAAAGACT 57.354 33.333 0.00 0.00 38.22 3.24
5120 5989 8.874816 GGTTCATAGTGAAATCTCTACAAAGAC 58.125 37.037 0.00 0.00 38.22 3.01
5121 5990 8.593679 TGGTTCATAGTGAAATCTCTACAAAGA 58.406 33.333 0.00 0.00 38.22 2.52
5122 5991 8.660373 GTGGTTCATAGTGAAATCTCTACAAAG 58.340 37.037 0.00 0.00 38.22 2.77
5123 5992 8.154203 TGTGGTTCATAGTGAAATCTCTACAAA 58.846 33.333 0.00 0.00 38.22 2.83
5124 5993 7.676004 TGTGGTTCATAGTGAAATCTCTACAA 58.324 34.615 0.00 0.00 38.22 2.41
5125 5994 7.239763 TGTGGTTCATAGTGAAATCTCTACA 57.760 36.000 0.00 0.00 38.22 2.74
5126 5995 9.250624 GTATGTGGTTCATAGTGAAATCTCTAC 57.749 37.037 0.00 0.00 38.22 2.59
5127 5996 8.977412 TGTATGTGGTTCATAGTGAAATCTCTA 58.023 33.333 0.00 0.00 38.22 2.43
5128 5997 7.851228 TGTATGTGGTTCATAGTGAAATCTCT 58.149 34.615 0.00 0.00 38.22 3.10
5129 5998 7.981789 TCTGTATGTGGTTCATAGTGAAATCTC 59.018 37.037 0.00 0.00 38.22 2.75
5130 5999 7.851228 TCTGTATGTGGTTCATAGTGAAATCT 58.149 34.615 0.00 0.00 38.22 2.40
5131 6000 8.554528 CATCTGTATGTGGTTCATAGTGAAATC 58.445 37.037 0.00 0.00 38.22 2.17
5132 6001 8.049117 ACATCTGTATGTGGTTCATAGTGAAAT 58.951 33.333 0.00 0.00 44.79 2.17
5133 6002 7.394016 ACATCTGTATGTGGTTCATAGTGAAA 58.606 34.615 0.00 0.00 44.79 2.69
5134 6003 6.946340 ACATCTGTATGTGGTTCATAGTGAA 58.054 36.000 0.00 0.00 44.79 3.18
5135 6004 6.544928 ACATCTGTATGTGGTTCATAGTGA 57.455 37.500 0.00 0.00 44.79 3.41
5157 6026 9.979270 CGGAGCAAAATGAATGAATCTATATAC 57.021 33.333 0.00 0.00 0.00 1.47
5158 6027 9.725019 ACGGAGCAAAATGAATGAATCTATATA 57.275 29.630 0.00 0.00 0.00 0.86
5159 6028 8.627208 ACGGAGCAAAATGAATGAATCTATAT 57.373 30.769 0.00 0.00 0.00 0.86
5160 6029 8.450578 AACGGAGCAAAATGAATGAATCTATA 57.549 30.769 0.00 0.00 0.00 1.31
5161 6030 6.949352 ACGGAGCAAAATGAATGAATCTAT 57.051 33.333 0.00 0.00 0.00 1.98
5162 6031 6.757897 AACGGAGCAAAATGAATGAATCTA 57.242 33.333 0.00 0.00 0.00 1.98
5163 6032 5.649782 AACGGAGCAAAATGAATGAATCT 57.350 34.783 0.00 0.00 0.00 2.40
5164 6033 7.992180 ATAAACGGAGCAAAATGAATGAATC 57.008 32.000 0.00 0.00 0.00 2.52
5165 6034 8.686334 ACTATAAACGGAGCAAAATGAATGAAT 58.314 29.630 0.00 0.00 0.00 2.57
5166 6035 8.050778 ACTATAAACGGAGCAAAATGAATGAA 57.949 30.769 0.00 0.00 0.00 2.57
5167 6036 7.201696 GGACTATAAACGGAGCAAAATGAATGA 60.202 37.037 0.00 0.00 0.00 2.57
5168 6037 6.912591 GGACTATAAACGGAGCAAAATGAATG 59.087 38.462 0.00 0.00 0.00 2.67
5169 6038 6.601613 TGGACTATAAACGGAGCAAAATGAAT 59.398 34.615 0.00 0.00 0.00 2.57
5170 6039 5.941058 TGGACTATAAACGGAGCAAAATGAA 59.059 36.000 0.00 0.00 0.00 2.57
5171 6040 5.492895 TGGACTATAAACGGAGCAAAATGA 58.507 37.500 0.00 0.00 0.00 2.57
5172 6041 5.811399 TGGACTATAAACGGAGCAAAATG 57.189 39.130 0.00 0.00 0.00 2.32
5173 6042 7.226720 CACTATGGACTATAAACGGAGCAAAAT 59.773 37.037 0.00 0.00 0.00 1.82
5174 6043 6.537301 CACTATGGACTATAAACGGAGCAAAA 59.463 38.462 0.00 0.00 0.00 2.44
5175 6044 6.046593 CACTATGGACTATAAACGGAGCAAA 58.953 40.000 0.00 0.00 0.00 3.68
5176 6045 5.361571 TCACTATGGACTATAAACGGAGCAA 59.638 40.000 0.00 0.00 0.00 3.91
5177 6046 4.891168 TCACTATGGACTATAAACGGAGCA 59.109 41.667 0.00 0.00 0.00 4.26
5178 6047 5.449107 TCACTATGGACTATAAACGGAGC 57.551 43.478 0.00 0.00 0.00 4.70
5179 6048 8.361139 AGATTTCACTATGGACTATAAACGGAG 58.639 37.037 0.00 0.00 0.00 4.63
5180 6049 8.246430 AGATTTCACTATGGACTATAAACGGA 57.754 34.615 0.00 0.00 0.00 4.69
5181 6050 8.361139 AGAGATTTCACTATGGACTATAAACGG 58.639 37.037 0.00 0.00 0.00 4.44
5188 6057 9.475620 TCTTTGTAGAGATTTCACTATGGACTA 57.524 33.333 0.00 0.00 0.00 2.59
5189 6058 8.254508 GTCTTTGTAGAGATTTCACTATGGACT 58.745 37.037 0.00 0.00 0.00 3.85
5190 6059 8.254508 AGTCTTTGTAGAGATTTCACTATGGAC 58.745 37.037 0.00 0.00 0.00 4.02
5191 6060 8.367660 AGTCTTTGTAGAGATTTCACTATGGA 57.632 34.615 0.00 0.00 0.00 3.41
5208 6077 8.537858 ACTCCGTTCCTAAATATAAGTCTTTGT 58.462 33.333 0.00 0.00 0.00 2.83
5209 6078 8.818057 CACTCCGTTCCTAAATATAAGTCTTTG 58.182 37.037 0.00 0.00 0.00 2.77
5210 6079 8.755977 TCACTCCGTTCCTAAATATAAGTCTTT 58.244 33.333 0.00 0.00 0.00 2.52
5211 6080 8.302515 TCACTCCGTTCCTAAATATAAGTCTT 57.697 34.615 0.00 0.00 0.00 3.01
5212 6081 7.560626 ACTCACTCCGTTCCTAAATATAAGTCT 59.439 37.037 0.00 0.00 0.00 3.24
5213 6082 7.714703 ACTCACTCCGTTCCTAAATATAAGTC 58.285 38.462 0.00 0.00 0.00 3.01
5214 6083 7.657023 ACTCACTCCGTTCCTAAATATAAGT 57.343 36.000 0.00 0.00 0.00 2.24
5215 6084 9.064706 TCTACTCACTCCGTTCCTAAATATAAG 57.935 37.037 0.00 0.00 0.00 1.73
5216 6085 8.985315 TCTACTCACTCCGTTCCTAAATATAA 57.015 34.615 0.00 0.00 0.00 0.98
5218 6087 9.233649 CTATCTACTCACTCCGTTCCTAAATAT 57.766 37.037 0.00 0.00 0.00 1.28
5219 6088 7.174599 GCTATCTACTCACTCCGTTCCTAAATA 59.825 40.741 0.00 0.00 0.00 1.40
5220 6089 6.016108 GCTATCTACTCACTCCGTTCCTAAAT 60.016 42.308 0.00 0.00 0.00 1.40
5221 6090 5.298777 GCTATCTACTCACTCCGTTCCTAAA 59.701 44.000 0.00 0.00 0.00 1.85
5222 6091 4.820716 GCTATCTACTCACTCCGTTCCTAA 59.179 45.833 0.00 0.00 0.00 2.69
5223 6092 4.102838 AGCTATCTACTCACTCCGTTCCTA 59.897 45.833 0.00 0.00 0.00 2.94
5224 6093 3.117813 AGCTATCTACTCACTCCGTTCCT 60.118 47.826 0.00 0.00 0.00 3.36
5225 6094 3.215975 AGCTATCTACTCACTCCGTTCC 58.784 50.000 0.00 0.00 0.00 3.62
5226 6095 4.577283 AGAAGCTATCTACTCACTCCGTTC 59.423 45.833 0.00 0.00 36.32 3.95
5227 6096 4.528920 AGAAGCTATCTACTCACTCCGTT 58.471 43.478 0.00 0.00 36.32 4.44
5228 6097 4.159244 AGAAGCTATCTACTCACTCCGT 57.841 45.455 0.00 0.00 36.32 4.69
5229 6098 5.277825 CAAAGAAGCTATCTACTCACTCCG 58.722 45.833 0.00 0.00 37.42 4.63
5230 6099 5.047188 GCAAAGAAGCTATCTACTCACTCC 58.953 45.833 0.00 0.00 37.42 3.85
5231 6100 5.047188 GGCAAAGAAGCTATCTACTCACTC 58.953 45.833 0.00 0.00 37.42 3.51
5232 6101 4.141824 GGGCAAAGAAGCTATCTACTCACT 60.142 45.833 0.00 0.00 37.42 3.41
5233 6102 4.123506 GGGCAAAGAAGCTATCTACTCAC 58.876 47.826 0.00 0.00 37.42 3.51
5234 6103 3.134804 GGGGCAAAGAAGCTATCTACTCA 59.865 47.826 0.00 0.00 37.42 3.41
5235 6104 3.389656 AGGGGCAAAGAAGCTATCTACTC 59.610 47.826 0.00 0.00 37.42 2.59
5236 6105 3.388913 AGGGGCAAAGAAGCTATCTACT 58.611 45.455 0.00 0.00 37.42 2.57
5237 6106 3.847671 AGGGGCAAAGAAGCTATCTAC 57.152 47.619 0.00 0.00 37.42 2.59
5238 6107 3.523564 ACAAGGGGCAAAGAAGCTATCTA 59.476 43.478 0.00 0.00 37.42 1.98
5239 6108 2.310052 ACAAGGGGCAAAGAAGCTATCT 59.690 45.455 0.00 0.00 41.32 1.98
5240 6109 2.728007 ACAAGGGGCAAAGAAGCTATC 58.272 47.619 0.00 0.00 34.17 2.08
5241 6110 2.827921 CAACAAGGGGCAAAGAAGCTAT 59.172 45.455 0.00 0.00 34.17 2.97
5242 6111 2.238521 CAACAAGGGGCAAAGAAGCTA 58.761 47.619 0.00 0.00 34.17 3.32
5243 6112 1.043022 CAACAAGGGGCAAAGAAGCT 58.957 50.000 0.00 0.00 34.17 3.74
5244 6113 0.033920 CCAACAAGGGGCAAAGAAGC 59.966 55.000 0.00 0.00 0.00 3.86
5245 6114 1.413118 ACCAACAAGGGGCAAAGAAG 58.587 50.000 0.00 0.00 43.89 2.85
5246 6115 1.484240 CAACCAACAAGGGGCAAAGAA 59.516 47.619 0.00 0.00 43.89 2.52
5247 6116 1.118838 CAACCAACAAGGGGCAAAGA 58.881 50.000 0.00 0.00 43.89 2.52
5248 6117 0.829990 ACAACCAACAAGGGGCAAAG 59.170 50.000 0.00 0.00 43.89 2.77
5249 6118 2.160721 TACAACCAACAAGGGGCAAA 57.839 45.000 0.00 0.00 43.89 3.68
5250 6119 2.160721 TTACAACCAACAAGGGGCAA 57.839 45.000 0.00 0.00 43.89 4.52
5251 6120 1.967066 CATTACAACCAACAAGGGGCA 59.033 47.619 0.00 0.00 43.89 5.36
5252 6121 1.275010 CCATTACAACCAACAAGGGGC 59.725 52.381 0.00 0.00 43.89 5.80
5272 6141 6.569179 TTGATTTTTCAGCTAACCACTACC 57.431 37.500 0.00 0.00 0.00 3.18
5299 6169 9.823647 TTTCAATTTGGAAGTAGCAAATTTGTA 57.176 25.926 19.03 7.97 36.67 2.41
5335 6207 4.651045 TCAATACTATCTCAGCTTCCAGCA 59.349 41.667 0.00 0.00 45.56 4.41
5336 6208 5.207110 TCAATACTATCTCAGCTTCCAGC 57.793 43.478 0.00 0.00 42.84 4.85
5337 6209 6.041409 TCCTTCAATACTATCTCAGCTTCCAG 59.959 42.308 0.00 0.00 0.00 3.86
5338 6210 5.899547 TCCTTCAATACTATCTCAGCTTCCA 59.100 40.000 0.00 0.00 0.00 3.53
5339 6211 6.412362 TCCTTCAATACTATCTCAGCTTCC 57.588 41.667 0.00 0.00 0.00 3.46
5340 6212 7.814107 CAGATCCTTCAATACTATCTCAGCTTC 59.186 40.741 0.00 0.00 0.00 3.86
5341 6213 7.289782 ACAGATCCTTCAATACTATCTCAGCTT 59.710 37.037 0.00 0.00 0.00 3.74
5342 6214 6.782000 ACAGATCCTTCAATACTATCTCAGCT 59.218 38.462 0.00 0.00 0.00 4.24
5343 6215 6.991938 ACAGATCCTTCAATACTATCTCAGC 58.008 40.000 0.00 0.00 0.00 4.26
5344 6216 9.829507 AAAACAGATCCTTCAATACTATCTCAG 57.170 33.333 0.00 0.00 0.00 3.35
5345 6217 9.823647 GAAAACAGATCCTTCAATACTATCTCA 57.176 33.333 0.00 0.00 0.00 3.27
5351 6223 9.525826 AATGAAGAAAACAGATCCTTCAATACT 57.474 29.630 12.05 0.00 45.24 2.12
5361 6233 9.833182 GAAAGGAAGTAATGAAGAAAACAGATC 57.167 33.333 0.00 0.00 0.00 2.75
5363 6235 8.980481 AGAAAGGAAGTAATGAAGAAAACAGA 57.020 30.769 0.00 0.00 0.00 3.41
5364 6236 9.670719 GAAGAAAGGAAGTAATGAAGAAAACAG 57.329 33.333 0.00 0.00 0.00 3.16
5369 6241 9.627123 TTTCAGAAGAAAGGAAGTAATGAAGAA 57.373 29.630 0.00 0.00 38.76 2.52
5386 6258 9.085645 TGTAAACAGAGGTAGTATTTCAGAAGA 57.914 33.333 0.00 0.00 0.00 2.87
5400 6279 3.221771 TGCAGCATTTGTAAACAGAGGT 58.778 40.909 0.00 0.00 0.00 3.85
5408 6287 8.668353 TGTAAAACATTTTTGCAGCATTTGTAA 58.332 25.926 0.00 0.00 0.00 2.41
5409 6288 8.201554 TGTAAAACATTTTTGCAGCATTTGTA 57.798 26.923 0.00 0.00 0.00 2.41
5425 6304 7.972832 TCCTCTGTTCGTAAATGTAAAACAT 57.027 32.000 0.00 0.00 41.31 2.71
5427 6306 7.803724 ACATCCTCTGTTCGTAAATGTAAAAC 58.196 34.615 0.00 0.00 32.90 2.43
5433 6339 6.811665 TCAACTACATCCTCTGTTCGTAAATG 59.188 38.462 0.00 0.00 39.39 2.32
5437 6343 4.763279 TGTCAACTACATCCTCTGTTCGTA 59.237 41.667 0.00 0.00 39.39 3.43
5438 6344 3.572682 TGTCAACTACATCCTCTGTTCGT 59.427 43.478 0.00 0.00 39.39 3.85
5439 6345 4.174411 TGTCAACTACATCCTCTGTTCG 57.826 45.455 0.00 0.00 39.39 3.95
5441 6347 5.552870 AGTTGTCAACTACATCCTCTGTT 57.447 39.130 16.74 0.00 40.69 3.16
5449 6355 6.054860 AGCAGGAATAGTTGTCAACTACAT 57.945 37.500 24.36 17.20 45.99 2.29
5450 6356 5.483685 AGCAGGAATAGTTGTCAACTACA 57.516 39.130 24.36 8.91 45.99 2.74
5459 6365 6.992063 AGACAACAATAGCAGGAATAGTTG 57.008 37.500 0.00 0.00 40.31 3.16
5467 6373 3.189287 GTGACCAAGACAACAATAGCAGG 59.811 47.826 0.00 0.00 0.00 4.85
5468 6374 3.814842 TGTGACCAAGACAACAATAGCAG 59.185 43.478 0.00 0.00 0.00 4.24
5469 6375 3.814625 TGTGACCAAGACAACAATAGCA 58.185 40.909 0.00 0.00 0.00 3.49
5470 6376 5.048782 TCAATGTGACCAAGACAACAATAGC 60.049 40.000 0.00 0.00 0.00 2.97
5473 6379 5.593909 TCTTCAATGTGACCAAGACAACAAT 59.406 36.000 0.00 0.00 0.00 2.71
5476 6382 5.239306 TGATCTTCAATGTGACCAAGACAAC 59.761 40.000 0.00 0.00 0.00 3.32
5478 6384 4.971939 TGATCTTCAATGTGACCAAGACA 58.028 39.130 0.00 0.00 0.00 3.41
5479 6385 5.645067 TCATGATCTTCAATGTGACCAAGAC 59.355 40.000 0.00 0.00 0.00 3.01
5480 6386 5.645067 GTCATGATCTTCAATGTGACCAAGA 59.355 40.000 0.00 0.00 31.29 3.02
5481 6387 5.413523 TGTCATGATCTTCAATGTGACCAAG 59.586 40.000 0.00 0.00 34.63 3.61
5482 6388 5.315348 TGTCATGATCTTCAATGTGACCAA 58.685 37.500 0.00 0.00 34.63 3.67
5483 6389 4.909001 TGTCATGATCTTCAATGTGACCA 58.091 39.130 0.00 0.00 34.63 4.02
5484 6390 7.558161 TTATGTCATGATCTTCAATGTGACC 57.442 36.000 0.00 0.00 34.63 4.02
5510 6416 9.467796 TGTCATTTTATATTGGTGGTTGACATA 57.532 29.630 0.00 0.00 36.85 2.29
5511 6417 8.359875 TGTCATTTTATATTGGTGGTTGACAT 57.640 30.769 0.00 0.00 36.85 3.06
5512 6418 7.767250 TGTCATTTTATATTGGTGGTTGACA 57.233 32.000 0.00 0.00 38.75 3.58
5513 6419 9.651913 ATTTGTCATTTTATATTGGTGGTTGAC 57.348 29.630 0.00 0.00 33.37 3.18
5559 6465 9.803315 GAATTTAGTGAAAGAAGACTTTGGTTT 57.197 29.630 0.00 0.00 44.97 3.27
5560 6466 9.190317 AGAATTTAGTGAAAGAAGACTTTGGTT 57.810 29.630 0.00 0.00 44.97 3.67
5561 6467 8.753497 AGAATTTAGTGAAAGAAGACTTTGGT 57.247 30.769 0.00 0.00 44.97 3.67
5565 6471 9.713713 GGAGTAGAATTTAGTGAAAGAAGACTT 57.286 33.333 0.00 0.00 38.05 3.01
5566 6472 8.315482 GGGAGTAGAATTTAGTGAAAGAAGACT 58.685 37.037 0.00 0.00 0.00 3.24
5567 6473 8.315482 AGGGAGTAGAATTTAGTGAAAGAAGAC 58.685 37.037 0.00 0.00 0.00 3.01
5568 6474 8.437274 AGGGAGTAGAATTTAGTGAAAGAAGA 57.563 34.615 0.00 0.00 0.00 2.87
5569 6475 8.536175 AGAGGGAGTAGAATTTAGTGAAAGAAG 58.464 37.037 0.00 0.00 0.00 2.85
5570 6476 8.314751 CAGAGGGAGTAGAATTTAGTGAAAGAA 58.685 37.037 0.00 0.00 0.00 2.52
5571 6477 7.455008 ACAGAGGGAGTAGAATTTAGTGAAAGA 59.545 37.037 0.00 0.00 0.00 2.52
5572 6478 7.616313 ACAGAGGGAGTAGAATTTAGTGAAAG 58.384 38.462 0.00 0.00 0.00 2.62
5619 6525 7.079700 TGTTAGATACTCCCTGAATCCCATAA 58.920 38.462 0.00 0.00 0.00 1.90
5620 6526 6.630131 TGTTAGATACTCCCTGAATCCCATA 58.370 40.000 0.00 0.00 0.00 2.74
5621 6527 5.476983 TGTTAGATACTCCCTGAATCCCAT 58.523 41.667 0.00 0.00 0.00 4.00
5622 6528 4.890988 TGTTAGATACTCCCTGAATCCCA 58.109 43.478 0.00 0.00 0.00 4.37
5623 6529 5.602978 TCTTGTTAGATACTCCCTGAATCCC 59.397 44.000 0.00 0.00 0.00 3.85
5624 6530 6.732896 TCTTGTTAGATACTCCCTGAATCC 57.267 41.667 0.00 0.00 0.00 3.01
5625 6531 7.787028 ACTTCTTGTTAGATACTCCCTGAATC 58.213 38.462 0.00 0.00 0.00 2.52
5627 6533 7.386851 CAACTTCTTGTTAGATACTCCCTGAA 58.613 38.462 0.00 0.00 37.07 3.02
5629 6535 5.582665 GCAACTTCTTGTTAGATACTCCCTG 59.417 44.000 0.00 0.00 37.07 4.45
5655 6651 8.669946 TTCAGCGAAATGTATTTCCATGTATA 57.330 30.769 10.76 0.00 42.34 1.47
5658 6654 5.895636 TTCAGCGAAATGTATTTCCATGT 57.104 34.783 10.76 0.00 42.34 3.21
5677 6673 8.284693 GCTGAAGTACGTTTTTATTACCTTTCA 58.715 33.333 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.