Multiple sequence alignment - TraesCS1A01G438700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G438700 chr1A 100.000 2477 0 0 1 2477 588308893 588311369 0.000000e+00 4575.0
1 TraesCS1A01G438700 chr6A 97.671 1503 34 1 1 1502 2292719 2291217 0.000000e+00 2580.0
2 TraesCS1A01G438700 chr4B 93.418 1504 90 4 3 1505 467098260 467099755 0.000000e+00 2220.0
3 TraesCS1A01G438700 chr4B 79.263 1519 302 13 3 1515 612999326 613000837 0.000000e+00 1048.0
4 TraesCS1A01G438700 chr4B 100.000 28 0 0 1950 1977 164917511 164917538 4.000000e-03 52.8
5 TraesCS1A01G438700 chr6D 87.922 1482 156 14 3 1482 243419355 243420815 0.000000e+00 1724.0
6 TraesCS1A01G438700 chr6D 91.557 379 25 5 2104 2477 58082518 58082894 1.310000e-142 516.0
7 TraesCS1A01G438700 chr6D 91.512 377 26 6 2104 2477 122668913 122668540 4.720000e-142 514.0
8 TraesCS1A01G438700 chr3A 91.587 1046 84 4 458 1502 543254621 543253579 0.000000e+00 1441.0
9 TraesCS1A01G438700 chr7B 78.888 1511 311 8 3 1507 609890970 609892478 0.000000e+00 1016.0
10 TraesCS1A01G438700 chr7B 78.846 1508 306 13 3 1503 367491402 367492903 0.000000e+00 1005.0
11 TraesCS1A01G438700 chr4A 78.794 1509 309 11 1 1502 486299632 486298128 0.000000e+00 1003.0
12 TraesCS1A01G438700 chr2D 78.396 1509 314 11 3 1503 57195345 57193841 0.000000e+00 970.0
13 TraesCS1A01G438700 chr2D 91.406 384 25 7 2099 2477 610242431 610242051 1.020000e-143 520.0
14 TraesCS1A01G438700 chr2D 86.538 52 7 0 1950 2001 624658517 624658568 9.570000e-05 58.4
15 TraesCS1A01G438700 chr1D 85.805 627 60 11 1502 2103 460203118 460203740 2.690000e-179 638.0
16 TraesCS1A01G438700 chr3D 93.351 376 20 5 2104 2477 399875469 399875841 3.600000e-153 551.0
17 TraesCS1A01G438700 chr3D 92.838 377 22 4 2104 2477 156923592 156923966 2.170000e-150 542.0
18 TraesCS1A01G438700 chr1B 83.200 625 71 16 1502 2103 680861534 680860921 2.170000e-150 542.0
19 TraesCS1A01G438700 chr1B 100.000 29 0 0 1949 1977 95389936 95389964 1.000000e-03 54.7
20 TraesCS1A01G438700 chr1B 100.000 29 0 0 1949 1977 95392569 95392597 1.000000e-03 54.7
21 TraesCS1A01G438700 chr5D 92.348 379 22 6 2104 2477 476851373 476850997 1.300000e-147 532.0
22 TraesCS1A01G438700 chr5D 91.979 374 24 6 2104 2474 23135117 23135487 1.020000e-143 520.0
23 TraesCS1A01G438700 chr4D 91.777 377 22 9 2104 2477 85031326 85031696 1.310000e-142 516.0
24 TraesCS1A01G438700 chr7D 91.534 378 25 6 2104 2477 267890574 267890948 4.720000e-142 514.0
25 TraesCS1A01G438700 chrUn 100.000 29 0 0 1949 1977 6206721 6206693 1.000000e-03 54.7
26 TraesCS1A01G438700 chrUn 100.000 29 0 0 1949 1977 358404658 358404630 1.000000e-03 54.7
27 TraesCS1A01G438700 chrUn 100.000 29 0 0 1949 1977 399533560 399533588 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G438700 chr1A 588308893 588311369 2476 False 4575 4575 100.000 1 2477 1 chr1A.!!$F1 2476
1 TraesCS1A01G438700 chr6A 2291217 2292719 1502 True 2580 2580 97.671 1 1502 1 chr6A.!!$R1 1501
2 TraesCS1A01G438700 chr4B 467098260 467099755 1495 False 2220 2220 93.418 3 1505 1 chr4B.!!$F2 1502
3 TraesCS1A01G438700 chr4B 612999326 613000837 1511 False 1048 1048 79.263 3 1515 1 chr4B.!!$F3 1512
4 TraesCS1A01G438700 chr6D 243419355 243420815 1460 False 1724 1724 87.922 3 1482 1 chr6D.!!$F2 1479
5 TraesCS1A01G438700 chr3A 543253579 543254621 1042 True 1441 1441 91.587 458 1502 1 chr3A.!!$R1 1044
6 TraesCS1A01G438700 chr7B 609890970 609892478 1508 False 1016 1016 78.888 3 1507 1 chr7B.!!$F2 1504
7 TraesCS1A01G438700 chr7B 367491402 367492903 1501 False 1005 1005 78.846 3 1503 1 chr7B.!!$F1 1500
8 TraesCS1A01G438700 chr4A 486298128 486299632 1504 True 1003 1003 78.794 1 1502 1 chr4A.!!$R1 1501
9 TraesCS1A01G438700 chr2D 57193841 57195345 1504 True 970 970 78.396 3 1503 1 chr2D.!!$R1 1500
10 TraesCS1A01G438700 chr1D 460203118 460203740 622 False 638 638 85.805 1502 2103 1 chr1D.!!$F1 601
11 TraesCS1A01G438700 chr1B 680860921 680861534 613 True 542 542 83.200 1502 2103 1 chr1B.!!$R1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 764 0.386113 GGATCGTGCAGGAGAGGTAC 59.614 60.0 15.18 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 1945 0.035598 TGGGGGTCGTTATGTGTGTG 59.964 55.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
290 293 6.016024 CACAAGTTCTTGGGATGAAGATTTGA 60.016 38.462 15.51 0.00 34.35 2.69
559 562 2.177394 TTTTCATCTGGCGCACACTA 57.823 45.000 10.83 0.00 0.00 2.74
756 762 0.689080 ATGGATCGTGCAGGAGAGGT 60.689 55.000 15.18 0.00 0.00 3.85
758 764 0.386113 GGATCGTGCAGGAGAGGTAC 59.614 60.000 15.18 0.00 0.00 3.34
934 941 0.613260 GGGTATCCATGCCATAGCGA 59.387 55.000 0.00 0.00 44.31 4.93
982 989 5.652014 CCAAATGCACTCAGTAAAATAGGGA 59.348 40.000 0.00 0.00 0.00 4.20
1252 1259 8.493607 TGGAAGTCATTGATACCATGAAGAATA 58.506 33.333 0.00 0.00 0.00 1.75
1359 1366 8.383318 AGCATTGTAATAGTGAAGCGAATAAT 57.617 30.769 0.00 0.00 0.00 1.28
1573 1585 6.897706 TCATGTGTTTCATTTTCATCTGGA 57.102 33.333 0.00 0.00 34.09 3.86
1590 1602 7.415908 TCATCTGGAGGATATATAAACCCGTA 58.584 38.462 5.93 0.00 32.64 4.02
1598 1611 9.212641 GAGGATATATAAACCCGTAACCTTTTC 57.787 37.037 0.00 0.00 0.00 2.29
1621 1634 8.475331 TTCTTAATAAGTGGTTTCTTAGAGCG 57.525 34.615 0.00 0.00 34.12 5.03
1647 1662 8.290325 GCGATTCATTTAAATAAAGGTAGAGGG 58.710 37.037 0.00 0.00 0.00 4.30
1678 1693 5.061179 CCCGTTAGATATCAAAAATCCGGT 58.939 41.667 0.00 0.00 29.17 5.28
1684 1699 9.503427 GTTAGATATCAAAAATCCGGTGAAAAG 57.497 33.333 0.00 0.00 0.00 2.27
1685 1700 7.703058 AGATATCAAAAATCCGGTGAAAAGT 57.297 32.000 0.00 0.00 0.00 2.66
1692 1707 6.399639 AAAATCCGGTGAAAAGTGTTACAT 57.600 33.333 0.00 0.00 0.00 2.29
1699 1714 4.510340 GGTGAAAAGTGTTACATCACGTCT 59.490 41.667 9.71 0.00 40.92 4.18
1700 1715 5.432157 GTGAAAAGTGTTACATCACGTCTG 58.568 41.667 1.79 0.00 42.40 3.51
1734 1749 1.586422 CATCAATCTGGCTACCCACG 58.414 55.000 0.00 0.00 35.79 4.94
1753 1768 2.031919 GACCCACGCACACCATCA 59.968 61.111 0.00 0.00 0.00 3.07
1757 1772 1.302431 CCACGCACACCATCAAGGA 60.302 57.895 0.00 0.00 41.22 3.36
1783 1801 2.383527 GGCTCCGACTTCAACGCAG 61.384 63.158 0.00 0.00 0.00 5.18
1814 1832 0.391597 AGGCCTCTTCGAACAAACGA 59.608 50.000 0.00 0.00 40.55 3.85
1819 1837 2.218759 CCTCTTCGAACAAACGACACAG 59.781 50.000 0.00 0.00 41.97 3.66
1821 1839 1.260561 CTTCGAACAAACGACACAGGG 59.739 52.381 0.00 0.00 41.97 4.45
1859 1877 2.296752 TCACATGCCAAACATTCACCAG 59.703 45.455 0.00 0.00 36.64 4.00
1907 1945 6.582677 AGTAGACTACATCTATGCCATCAC 57.417 41.667 14.95 0.00 42.06 3.06
1990 2029 1.195115 CTGGACTGTTGCCCTAGCTA 58.805 55.000 0.00 0.00 40.80 3.32
1992 2031 1.196012 GGACTGTTGCCCTAGCTACT 58.804 55.000 0.00 0.00 43.97 2.57
2061 2100 3.829601 GGATGAGACGGGATCTTGTAGAT 59.170 47.826 0.00 0.00 38.00 1.98
2065 2104 4.895889 TGAGACGGGATCTTGTAGATGATT 59.104 41.667 0.00 0.00 38.00 2.57
2107 2147 6.575162 AAAAATAGCTAGTCCAAGGTGTTG 57.425 37.500 0.00 0.00 30.12 3.33
2115 2155 4.571243 CAAGGTGTTGGGGAACGT 57.429 55.556 0.00 0.00 0.00 3.99
2116 2156 3.709974 CAAGGTGTTGGGGAACGTA 57.290 52.632 0.00 0.00 0.00 3.57
2117 2157 1.519408 CAAGGTGTTGGGGAACGTAG 58.481 55.000 0.00 0.00 0.00 3.51
2119 2159 2.014010 AGGTGTTGGGGAACGTAGTA 57.986 50.000 0.00 0.00 45.00 1.82
2120 2160 1.897802 AGGTGTTGGGGAACGTAGTAG 59.102 52.381 0.00 0.00 45.00 2.57
2121 2161 1.620323 GGTGTTGGGGAACGTAGTAGT 59.380 52.381 0.00 0.00 45.00 2.73
2122 2162 2.037641 GGTGTTGGGGAACGTAGTAGTT 59.962 50.000 0.00 0.00 45.00 2.24
2123 2163 3.494924 GGTGTTGGGGAACGTAGTAGTTT 60.495 47.826 0.00 0.00 45.00 2.66
2124 2164 3.742882 GTGTTGGGGAACGTAGTAGTTTC 59.257 47.826 0.00 0.00 45.00 2.78
2125 2165 3.387374 TGTTGGGGAACGTAGTAGTTTCA 59.613 43.478 0.00 0.00 45.00 2.69
2126 2166 4.141756 TGTTGGGGAACGTAGTAGTTTCAA 60.142 41.667 0.00 0.00 45.00 2.69
2127 2167 4.686191 TGGGGAACGTAGTAGTTTCAAA 57.314 40.909 0.00 0.00 45.00 2.69
2128 2168 5.033589 TGGGGAACGTAGTAGTTTCAAAA 57.966 39.130 0.00 0.00 45.00 2.44
2129 2169 5.435291 TGGGGAACGTAGTAGTTTCAAAAA 58.565 37.500 0.00 0.00 45.00 1.94
2146 2186 3.341857 AAAAATTTCTACGCACACGCA 57.658 38.095 0.00 0.00 45.53 5.24
2147 2187 2.594529 AAATTTCTACGCACACGCAG 57.405 45.000 0.00 0.00 45.53 5.18
2149 2189 2.357327 ATTTCTACGCACACGCAGTA 57.643 45.000 0.00 0.00 41.61 2.74
2150 2190 2.357327 TTTCTACGCACACGCAGTAT 57.643 45.000 0.00 0.00 41.61 2.12
2151 2191 1.904144 TTCTACGCACACGCAGTATC 58.096 50.000 0.00 0.00 41.61 2.24
2152 2192 0.806241 TCTACGCACACGCAGTATCA 59.194 50.000 0.00 0.00 41.61 2.15
2153 2193 1.404035 TCTACGCACACGCAGTATCAT 59.596 47.619 0.00 0.00 41.61 2.45
2154 2194 1.518515 CTACGCACACGCAGTATCATG 59.481 52.381 0.00 0.00 41.61 3.07
2155 2195 1.083806 ACGCACACGCAGTATCATGG 61.084 55.000 0.00 0.00 41.61 3.66
2156 2196 1.083806 CGCACACGCAGTATCATGGT 61.084 55.000 0.00 0.00 41.61 3.55
2157 2197 0.374758 GCACACGCAGTATCATGGTG 59.625 55.000 0.00 0.00 41.61 4.17
2158 2198 2.006552 GCACACGCAGTATCATGGTGA 61.007 52.381 3.46 0.00 41.61 4.02
2159 2199 2.554142 CACACGCAGTATCATGGTGAT 58.446 47.619 3.46 0.00 41.61 3.06
2160 2200 2.286025 CACACGCAGTATCATGGTGATG 59.714 50.000 2.82 0.00 41.61 3.07
2161 2201 1.262417 CACGCAGTATCATGGTGATGC 59.738 52.381 7.06 7.06 41.61 3.91
2162 2202 1.134431 ACGCAGTATCATGGTGATGCA 60.134 47.619 15.10 0.00 41.14 3.96
2163 2203 2.148768 CGCAGTATCATGGTGATGCAT 58.851 47.619 15.10 0.00 41.14 3.96
2164 2204 3.244181 ACGCAGTATCATGGTGATGCATA 60.244 43.478 15.10 0.00 41.14 3.14
2165 2205 3.370061 CGCAGTATCATGGTGATGCATAG 59.630 47.826 15.10 0.00 41.14 2.23
2166 2206 3.126514 GCAGTATCATGGTGATGCATAGC 59.873 47.826 11.22 0.00 41.14 2.97
2167 2207 4.320870 CAGTATCATGGTGATGCATAGCA 58.679 43.478 0.00 4.86 41.14 3.49
2168 2208 4.758165 CAGTATCATGGTGATGCATAGCAA 59.242 41.667 0.00 0.00 43.62 3.91
2169 2209 4.758674 AGTATCATGGTGATGCATAGCAAC 59.241 41.667 0.00 0.00 43.62 4.17
2170 2210 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
2171 2211 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
2172 2212 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
2173 2213 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
2174 2214 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
2175 2215 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
2176 2216 1.756538 TGATGCATAGCAACGAGAGGA 59.243 47.619 0.00 0.00 43.62 3.71
2177 2217 2.223900 TGATGCATAGCAACGAGAGGAG 60.224 50.000 0.00 0.00 43.62 3.69
2178 2218 1.474330 TGCATAGCAACGAGAGGAGA 58.526 50.000 0.00 0.00 34.76 3.71
2179 2219 1.406898 TGCATAGCAACGAGAGGAGAG 59.593 52.381 0.00 0.00 34.76 3.20
2180 2220 1.678627 GCATAGCAACGAGAGGAGAGA 59.321 52.381 0.00 0.00 0.00 3.10
2181 2221 2.287547 GCATAGCAACGAGAGGAGAGAG 60.288 54.545 0.00 0.00 0.00 3.20
2182 2222 3.210227 CATAGCAACGAGAGGAGAGAGA 58.790 50.000 0.00 0.00 0.00 3.10
2183 2223 1.750193 AGCAACGAGAGGAGAGAGAG 58.250 55.000 0.00 0.00 0.00 3.20
2184 2224 1.004277 AGCAACGAGAGGAGAGAGAGT 59.996 52.381 0.00 0.00 0.00 3.24
2185 2225 1.132262 GCAACGAGAGGAGAGAGAGTG 59.868 57.143 0.00 0.00 0.00 3.51
2186 2226 2.432444 CAACGAGAGGAGAGAGAGTGT 58.568 52.381 0.00 0.00 0.00 3.55
2187 2227 2.817258 CAACGAGAGGAGAGAGAGTGTT 59.183 50.000 0.00 0.00 0.00 3.32
2188 2228 2.432444 ACGAGAGGAGAGAGAGTGTTG 58.568 52.381 0.00 0.00 0.00 3.33
2189 2229 2.224670 ACGAGAGGAGAGAGAGTGTTGT 60.225 50.000 0.00 0.00 0.00 3.32
2190 2230 2.418628 CGAGAGGAGAGAGAGTGTTGTC 59.581 54.545 0.00 0.00 0.00 3.18
2191 2231 2.752903 GAGAGGAGAGAGAGTGTTGTCC 59.247 54.545 0.00 0.00 0.00 4.02
2192 2232 2.109128 AGAGGAGAGAGAGTGTTGTCCA 59.891 50.000 0.00 0.00 0.00 4.02
2193 2233 2.230266 GAGGAGAGAGAGTGTTGTCCAC 59.770 54.545 0.00 0.00 44.89 4.02
2201 2241 3.206090 GTGTTGTCCACGTACCCTC 57.794 57.895 0.00 0.00 33.61 4.30
2202 2242 0.665369 GTGTTGTCCACGTACCCTCG 60.665 60.000 0.00 0.00 33.61 4.63
2203 2243 1.108727 TGTTGTCCACGTACCCTCGT 61.109 55.000 0.00 0.00 45.10 4.18
2204 2244 0.881118 GTTGTCCACGTACCCTCGTA 59.119 55.000 0.00 0.00 42.27 3.43
2205 2245 1.135575 GTTGTCCACGTACCCTCGTAG 60.136 57.143 0.00 0.00 42.27 3.51
2206 2246 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
2207 2247 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
2208 2248 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
2209 2249 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
2210 2250 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
2211 2251 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
2212 2252 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
2213 2253 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
2214 2254 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
2215 2255 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
2232 2272 3.850207 CGGAAGCGTTATGACAACG 57.150 52.632 5.22 5.22 45.56 4.10
2239 2279 0.785378 CGTTATGACAACGCGGTTGA 59.215 50.000 22.26 6.79 45.28 3.18
2240 2280 1.392168 CGTTATGACAACGCGGTTGAT 59.608 47.619 22.26 12.10 45.28 2.57
2241 2281 2.769376 GTTATGACAACGCGGTTGATG 58.231 47.619 22.26 11.18 45.28 3.07
2242 2282 2.087501 TATGACAACGCGGTTGATGT 57.912 45.000 22.26 13.84 45.28 3.06
2243 2283 2.087501 ATGACAACGCGGTTGATGTA 57.912 45.000 22.26 9.68 45.28 2.29
2244 2284 1.424403 TGACAACGCGGTTGATGTAG 58.576 50.000 22.26 1.41 45.28 2.74
2245 2285 1.269883 TGACAACGCGGTTGATGTAGT 60.270 47.619 22.26 4.69 45.28 2.73
2246 2286 1.389106 GACAACGCGGTTGATGTAGTC 59.611 52.381 22.26 10.01 45.28 2.59
2247 2287 1.269883 ACAACGCGGTTGATGTAGTCA 60.270 47.619 22.26 0.00 45.28 3.41
2248 2288 1.999735 CAACGCGGTTGATGTAGTCAT 59.000 47.619 12.47 0.00 45.28 3.06
2249 2289 3.183754 CAACGCGGTTGATGTAGTCATA 58.816 45.455 12.47 0.00 45.28 2.15
2250 2290 2.805845 ACGCGGTTGATGTAGTCATAC 58.194 47.619 12.47 0.00 36.54 2.39
2251 2291 1.779157 CGCGGTTGATGTAGTCATACG 59.221 52.381 0.00 0.00 38.54 3.06
2252 2292 2.793585 CGCGGTTGATGTAGTCATACGT 60.794 50.000 0.00 0.00 38.10 3.57
2253 2293 2.787680 GCGGTTGATGTAGTCATACGTC 59.212 50.000 0.00 1.51 44.83 4.34
2254 2294 3.488721 GCGGTTGATGTAGTCATACGTCT 60.489 47.826 0.00 0.00 44.85 4.18
2255 2295 4.669318 CGGTTGATGTAGTCATACGTCTT 58.331 43.478 0.00 0.00 44.85 3.01
2256 2296 4.733887 CGGTTGATGTAGTCATACGTCTTC 59.266 45.833 0.00 3.12 44.85 2.87
2257 2297 5.647589 GGTTGATGTAGTCATACGTCTTCA 58.352 41.667 0.00 0.00 44.85 3.02
2258 2298 6.273825 GGTTGATGTAGTCATACGTCTTCAT 58.726 40.000 0.00 0.00 44.85 2.57
2259 2299 6.199154 GGTTGATGTAGTCATACGTCTTCATG 59.801 42.308 0.00 0.00 44.85 3.07
2260 2300 6.693315 TGATGTAGTCATACGTCTTCATGA 57.307 37.500 0.00 0.00 44.85 3.07
2261 2301 7.277174 TGATGTAGTCATACGTCTTCATGAT 57.723 36.000 0.00 0.00 44.85 2.45
2262 2302 7.363431 TGATGTAGTCATACGTCTTCATGATC 58.637 38.462 0.00 0.00 44.85 2.92
2263 2303 6.073327 TGTAGTCATACGTCTTCATGATCC 57.927 41.667 0.00 0.00 33.92 3.36
2264 2304 4.230314 AGTCATACGTCTTCATGATCCG 57.770 45.455 0.00 1.79 33.92 4.18
2265 2305 3.883489 AGTCATACGTCTTCATGATCCGA 59.117 43.478 13.88 1.87 33.92 4.55
2266 2306 3.975670 GTCATACGTCTTCATGATCCGAC 59.024 47.826 13.88 11.45 33.92 4.79
2267 2307 3.004419 TCATACGTCTTCATGATCCGACC 59.996 47.826 13.88 0.50 0.00 4.79
2268 2308 0.100682 ACGTCTTCATGATCCGACCG 59.899 55.000 13.88 10.96 0.00 4.79
2269 2309 0.380733 CGTCTTCATGATCCGACCGA 59.619 55.000 0.00 0.00 0.00 4.69
2270 2310 1.001268 CGTCTTCATGATCCGACCGAT 60.001 52.381 0.00 0.00 0.00 4.18
2271 2311 2.667137 GTCTTCATGATCCGACCGATC 58.333 52.381 0.00 0.00 46.70 3.69
2272 2312 1.613925 TCTTCATGATCCGACCGATCC 59.386 52.381 0.00 0.00 46.06 3.36
2273 2313 1.341209 CTTCATGATCCGACCGATCCA 59.659 52.381 0.00 0.00 46.06 3.41
2274 2314 1.408969 TCATGATCCGACCGATCCAA 58.591 50.000 0.00 0.00 46.06 3.53
2275 2315 1.341209 TCATGATCCGACCGATCCAAG 59.659 52.381 0.00 0.00 46.06 3.61
2276 2316 1.069204 CATGATCCGACCGATCCAAGT 59.931 52.381 1.96 0.00 46.06 3.16
2277 2317 2.061509 TGATCCGACCGATCCAAGTA 57.938 50.000 1.96 0.00 46.06 2.24
2278 2318 1.679680 TGATCCGACCGATCCAAGTAC 59.320 52.381 1.96 0.00 46.06 2.73
2279 2319 1.000496 GATCCGACCGATCCAAGTACC 60.000 57.143 0.00 0.00 41.51 3.34
2280 2320 1.065273 CCGACCGATCCAAGTACCG 59.935 63.158 0.00 0.00 0.00 4.02
2281 2321 1.378882 CCGACCGATCCAAGTACCGA 61.379 60.000 0.00 0.00 0.00 4.69
2282 2322 0.452987 CGACCGATCCAAGTACCGAA 59.547 55.000 0.00 0.00 0.00 4.30
2283 2323 1.796617 CGACCGATCCAAGTACCGAAC 60.797 57.143 0.00 0.00 0.00 3.95
2284 2324 0.171903 ACCGATCCAAGTACCGAACG 59.828 55.000 0.00 0.00 0.00 3.95
2285 2325 1.143969 CCGATCCAAGTACCGAACGC 61.144 60.000 0.00 0.00 0.00 4.84
2286 2326 0.457166 CGATCCAAGTACCGAACGCA 60.457 55.000 0.00 0.00 0.00 5.24
2287 2327 0.997196 GATCCAAGTACCGAACGCAC 59.003 55.000 0.00 0.00 0.00 5.34
2288 2328 0.734942 ATCCAAGTACCGAACGCACG 60.735 55.000 0.00 0.00 0.00 5.34
2305 2345 2.435059 GGCACCTCCGAGTTCAGC 60.435 66.667 0.00 0.00 0.00 4.26
2306 2346 2.343758 GCACCTCCGAGTTCAGCA 59.656 61.111 0.00 0.00 0.00 4.41
2307 2347 2.029844 GCACCTCCGAGTTCAGCAC 61.030 63.158 0.00 0.00 0.00 4.40
2308 2348 1.367471 CACCTCCGAGTTCAGCACA 59.633 57.895 0.00 0.00 0.00 4.57
2309 2349 0.946221 CACCTCCGAGTTCAGCACAC 60.946 60.000 0.00 0.00 0.00 3.82
2310 2350 1.734477 CCTCCGAGTTCAGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
2311 2351 1.007271 CTCCGAGTTCAGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
2312 2352 0.597637 CTCCGAGTTCAGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
2313 2353 0.596600 TCCGAGTTCAGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
2314 2354 0.874175 CCGAGTTCAGCACACGTTCA 60.874 55.000 0.00 0.00 37.75 3.18
2315 2355 0.504384 CGAGTTCAGCACACGTTCAG 59.496 55.000 0.00 0.00 35.01 3.02
2316 2356 0.233332 GAGTTCAGCACACGTTCAGC 59.767 55.000 0.00 0.00 0.00 4.26
2317 2357 0.179073 AGTTCAGCACACGTTCAGCT 60.179 50.000 0.64 0.64 39.63 4.24
2318 2358 0.233332 GTTCAGCACACGTTCAGCTC 59.767 55.000 3.38 0.00 36.26 4.09
2319 2359 1.215014 TTCAGCACACGTTCAGCTCG 61.215 55.000 3.38 0.00 36.26 5.03
2320 2360 1.661509 CAGCACACGTTCAGCTCGA 60.662 57.895 3.38 0.00 36.26 4.04
2321 2361 1.010935 CAGCACACGTTCAGCTCGAT 61.011 55.000 3.38 0.00 36.26 3.59
2322 2362 1.010935 AGCACACGTTCAGCTCGATG 61.011 55.000 0.00 0.07 32.05 3.84
2323 2363 1.008875 GCACACGTTCAGCTCGATGA 61.009 55.000 0.00 0.00 0.00 2.92
2324 2364 0.710567 CACACGTTCAGCTCGATGAC 59.289 55.000 0.00 0.00 0.00 3.06
2325 2365 0.729478 ACACGTTCAGCTCGATGACG 60.729 55.000 0.00 4.93 41.26 4.35
2326 2366 0.729478 CACGTTCAGCTCGATGACGT 60.729 55.000 0.00 5.49 37.39 4.34
2327 2367 0.454620 ACGTTCAGCTCGATGACGTC 60.455 55.000 9.11 9.11 40.69 4.34
2328 2368 1.134530 CGTTCAGCTCGATGACGTCC 61.135 60.000 14.12 0.00 40.69 4.79
2329 2369 0.802607 GTTCAGCTCGATGACGTCCC 60.803 60.000 14.12 3.95 40.69 4.46
2330 2370 1.248101 TTCAGCTCGATGACGTCCCA 61.248 55.000 14.12 0.00 40.69 4.37
2331 2371 1.037579 TCAGCTCGATGACGTCCCAT 61.038 55.000 14.12 0.38 40.69 4.00
2332 2372 0.873312 CAGCTCGATGACGTCCCATG 60.873 60.000 14.12 0.23 40.69 3.66
2333 2373 1.037579 AGCTCGATGACGTCCCATGA 61.038 55.000 14.12 4.97 40.69 3.07
2334 2374 0.179111 GCTCGATGACGTCCCATGAA 60.179 55.000 14.12 0.00 40.69 2.57
2335 2375 1.560923 CTCGATGACGTCCCATGAAC 58.439 55.000 14.12 0.00 40.69 3.18
2336 2376 1.135139 CTCGATGACGTCCCATGAACT 59.865 52.381 14.12 0.00 40.69 3.01
2337 2377 1.134367 TCGATGACGTCCCATGAACTC 59.866 52.381 14.12 0.00 40.69 3.01
2338 2378 1.802880 CGATGACGTCCCATGAACTCC 60.803 57.143 14.12 0.00 34.56 3.85
2339 2379 0.175760 ATGACGTCCCATGAACTCCG 59.824 55.000 14.12 0.00 0.00 4.63
2340 2380 0.896479 TGACGTCCCATGAACTCCGA 60.896 55.000 14.12 0.00 0.00 4.55
2341 2381 0.460311 GACGTCCCATGAACTCCGAT 59.540 55.000 3.51 0.00 0.00 4.18
2342 2382 0.460311 ACGTCCCATGAACTCCGATC 59.540 55.000 0.00 0.00 0.00 3.69
2343 2383 0.249489 CGTCCCATGAACTCCGATCC 60.249 60.000 0.00 0.00 0.00 3.36
2344 2384 0.830648 GTCCCATGAACTCCGATCCA 59.169 55.000 0.00 0.00 0.00 3.41
2345 2385 1.123077 TCCCATGAACTCCGATCCAG 58.877 55.000 0.00 0.00 0.00 3.86
2346 2386 0.533755 CCCATGAACTCCGATCCAGC 60.534 60.000 0.00 0.00 0.00 4.85
2347 2387 0.178767 CCATGAACTCCGATCCAGCA 59.821 55.000 0.00 0.00 0.00 4.41
2348 2388 1.579698 CATGAACTCCGATCCAGCAG 58.420 55.000 0.00 0.00 0.00 4.24
2349 2389 1.137675 CATGAACTCCGATCCAGCAGA 59.862 52.381 0.00 0.00 0.00 4.26
2350 2390 0.820226 TGAACTCCGATCCAGCAGAG 59.180 55.000 0.00 0.00 0.00 3.35
2351 2391 0.529555 GAACTCCGATCCAGCAGAGC 60.530 60.000 0.00 0.00 0.00 4.09
2352 2392 0.975040 AACTCCGATCCAGCAGAGCT 60.975 55.000 0.00 0.00 40.77 4.09
2353 2393 0.975040 ACTCCGATCCAGCAGAGCTT 60.975 55.000 0.00 0.00 36.40 3.74
2354 2394 0.249405 CTCCGATCCAGCAGAGCTTC 60.249 60.000 0.00 0.00 36.40 3.86
2355 2395 1.591059 CCGATCCAGCAGAGCTTCG 60.591 63.158 4.99 4.99 36.40 3.79
2356 2396 1.435105 CGATCCAGCAGAGCTTCGA 59.565 57.895 5.86 0.00 38.27 3.71
2357 2397 0.594540 CGATCCAGCAGAGCTTCGAG 60.595 60.000 5.86 0.00 38.27 4.04
2358 2398 0.249405 GATCCAGCAGAGCTTCGAGG 60.249 60.000 0.00 0.00 36.40 4.63
2359 2399 1.684386 ATCCAGCAGAGCTTCGAGGG 61.684 60.000 0.00 0.00 36.40 4.30
2360 2400 2.354401 CCAGCAGAGCTTCGAGGGA 61.354 63.158 0.00 0.00 36.40 4.20
2361 2401 1.141449 CAGCAGAGCTTCGAGGGAG 59.859 63.158 0.00 0.00 36.40 4.30
2362 2402 1.000270 AGCAGAGCTTCGAGGGAGA 60.000 57.895 0.00 0.00 33.89 3.71
2363 2403 1.037030 AGCAGAGCTTCGAGGGAGAG 61.037 60.000 0.00 0.00 33.89 3.20
2364 2404 1.319614 GCAGAGCTTCGAGGGAGAGT 61.320 60.000 0.00 0.00 0.00 3.24
2365 2405 1.181786 CAGAGCTTCGAGGGAGAGTT 58.818 55.000 0.00 0.00 0.00 3.01
2366 2406 1.548269 CAGAGCTTCGAGGGAGAGTTT 59.452 52.381 0.00 0.00 0.00 2.66
2367 2407 1.822371 AGAGCTTCGAGGGAGAGTTTC 59.178 52.381 0.00 0.00 0.00 2.78
2368 2408 1.546476 GAGCTTCGAGGGAGAGTTTCA 59.454 52.381 0.00 0.00 0.00 2.69
2369 2409 2.167487 GAGCTTCGAGGGAGAGTTTCAT 59.833 50.000 0.00 0.00 0.00 2.57
2370 2410 2.569404 AGCTTCGAGGGAGAGTTTCATT 59.431 45.455 0.00 0.00 0.00 2.57
2371 2411 3.769844 AGCTTCGAGGGAGAGTTTCATTA 59.230 43.478 0.00 0.00 0.00 1.90
2372 2412 4.116238 GCTTCGAGGGAGAGTTTCATTAG 58.884 47.826 0.00 0.00 0.00 1.73
2373 2413 3.802948 TCGAGGGAGAGTTTCATTAGC 57.197 47.619 0.00 0.00 0.00 3.09
2374 2414 3.096852 TCGAGGGAGAGTTTCATTAGCA 58.903 45.455 0.00 0.00 0.00 3.49
2375 2415 3.119101 TCGAGGGAGAGTTTCATTAGCAC 60.119 47.826 0.00 0.00 0.00 4.40
2376 2416 3.190874 GAGGGAGAGTTTCATTAGCACG 58.809 50.000 0.00 0.00 0.00 5.34
2377 2417 2.832129 AGGGAGAGTTTCATTAGCACGA 59.168 45.455 0.00 0.00 0.00 4.35
2378 2418 2.930682 GGGAGAGTTTCATTAGCACGAC 59.069 50.000 0.00 0.00 0.00 4.34
2379 2419 2.599082 GGAGAGTTTCATTAGCACGACG 59.401 50.000 0.00 0.00 0.00 5.12
2380 2420 2.599082 GAGAGTTTCATTAGCACGACGG 59.401 50.000 0.00 0.00 0.00 4.79
2381 2421 2.029290 AGAGTTTCATTAGCACGACGGT 60.029 45.455 0.00 0.00 0.00 4.83
2388 2428 2.219445 CATTAGCACGACGGTGATGATG 59.781 50.000 0.00 3.46 45.75 3.07
2392 2432 2.977700 ACGACGGTGATGATGATGC 58.022 52.632 0.00 0.00 0.00 3.91
2393 2433 0.461548 ACGACGGTGATGATGATGCT 59.538 50.000 0.00 0.00 0.00 3.79
2394 2434 1.681264 ACGACGGTGATGATGATGCTA 59.319 47.619 0.00 0.00 0.00 3.49
2395 2435 2.054363 CGACGGTGATGATGATGCTAC 58.946 52.381 0.00 0.00 0.00 3.58
2396 2436 2.287849 CGACGGTGATGATGATGCTACT 60.288 50.000 0.00 0.00 0.00 2.57
2397 2437 3.055591 GACGGTGATGATGATGCTACTG 58.944 50.000 0.00 0.00 0.00 2.74
2398 2438 2.224137 ACGGTGATGATGATGCTACTGG 60.224 50.000 0.00 0.00 0.00 4.00
2399 2439 2.149578 GGTGATGATGATGCTACTGGC 58.850 52.381 0.00 0.00 42.22 4.85
2400 2440 1.797046 GTGATGATGATGCTACTGGCG 59.203 52.381 0.00 0.00 45.43 5.69
2401 2441 0.795085 GATGATGATGCTACTGGCGC 59.205 55.000 0.00 0.00 45.43 6.53
2402 2442 0.107268 ATGATGATGCTACTGGCGCA 59.893 50.000 10.83 0.00 45.43 6.09
2403 2443 0.531311 TGATGATGCTACTGGCGCAG 60.531 55.000 10.83 7.58 45.43 5.18
2404 2444 1.226686 GATGATGCTACTGGCGCAGG 61.227 60.000 10.83 3.05 45.43 4.85
2405 2445 2.590007 GATGCTACTGGCGCAGGG 60.590 66.667 10.83 0.04 45.43 4.45
2406 2446 4.864334 ATGCTACTGGCGCAGGGC 62.864 66.667 10.83 13.47 45.43 5.19
2408 2448 4.785453 GCTACTGGCGCAGGGCTT 62.785 66.667 10.83 0.00 42.94 4.35
2409 2449 2.512515 CTACTGGCGCAGGGCTTC 60.513 66.667 10.83 0.00 42.94 3.86
2410 2450 3.315142 CTACTGGCGCAGGGCTTCA 62.315 63.158 10.83 0.00 42.94 3.02
2411 2451 3.605749 TACTGGCGCAGGGCTTCAC 62.606 63.158 10.83 0.00 42.94 3.18
2414 2454 4.096003 GGCGCAGGGCTTCACCTA 62.096 66.667 10.83 0.00 39.34 3.08
2415 2455 2.046314 GCGCAGGGCTTCACCTAA 60.046 61.111 0.30 0.00 39.34 2.69
2416 2456 2.109126 GCGCAGGGCTTCACCTAAG 61.109 63.158 0.30 0.00 39.34 2.18
2425 2465 1.641577 CTTCACCTAAGCACCGCTAC 58.358 55.000 0.00 0.00 38.25 3.58
2426 2466 0.970640 TTCACCTAAGCACCGCTACA 59.029 50.000 0.00 0.00 38.25 2.74
2427 2467 0.970640 TCACCTAAGCACCGCTACAA 59.029 50.000 0.00 0.00 38.25 2.41
2428 2468 1.553248 TCACCTAAGCACCGCTACAAT 59.447 47.619 0.00 0.00 38.25 2.71
2429 2469 2.761767 TCACCTAAGCACCGCTACAATA 59.238 45.455 0.00 0.00 38.25 1.90
2430 2470 3.386726 TCACCTAAGCACCGCTACAATAT 59.613 43.478 0.00 0.00 38.25 1.28
2431 2471 3.494626 CACCTAAGCACCGCTACAATATG 59.505 47.826 0.00 0.00 38.25 1.78
2432 2472 3.386726 ACCTAAGCACCGCTACAATATGA 59.613 43.478 0.00 0.00 38.25 2.15
2433 2473 3.741344 CCTAAGCACCGCTACAATATGAC 59.259 47.826 0.00 0.00 38.25 3.06
2434 2474 2.240493 AGCACCGCTACAATATGACC 57.760 50.000 0.00 0.00 36.99 4.02
2435 2475 0.859232 GCACCGCTACAATATGACCG 59.141 55.000 0.00 0.00 0.00 4.79
2436 2476 1.537348 GCACCGCTACAATATGACCGA 60.537 52.381 0.00 0.00 0.00 4.69
2437 2477 2.394708 CACCGCTACAATATGACCGAG 58.605 52.381 0.00 0.00 0.00 4.63
2438 2478 1.340248 ACCGCTACAATATGACCGAGG 59.660 52.381 0.00 0.00 0.00 4.63
2439 2479 1.340248 CCGCTACAATATGACCGAGGT 59.660 52.381 0.00 0.00 0.00 3.85
2440 2480 2.394708 CGCTACAATATGACCGAGGTG 58.605 52.381 0.00 0.00 0.00 4.00
2441 2481 2.755650 GCTACAATATGACCGAGGTGG 58.244 52.381 0.00 0.00 46.41 4.61
2442 2482 2.364324 GCTACAATATGACCGAGGTGGA 59.636 50.000 0.00 0.00 42.00 4.02
2443 2483 3.006967 GCTACAATATGACCGAGGTGGAT 59.993 47.826 0.00 0.00 42.00 3.41
2444 2484 4.503296 GCTACAATATGACCGAGGTGGATT 60.503 45.833 0.00 0.00 42.00 3.01
2445 2485 5.279306 GCTACAATATGACCGAGGTGGATTA 60.279 44.000 0.00 0.00 42.00 1.75
2446 2486 5.825593 ACAATATGACCGAGGTGGATTAT 57.174 39.130 0.00 0.00 42.00 1.28
2447 2487 5.551233 ACAATATGACCGAGGTGGATTATG 58.449 41.667 0.00 0.00 42.00 1.90
2448 2488 4.826274 ATATGACCGAGGTGGATTATGG 57.174 45.455 0.00 0.00 42.00 2.74
2449 2489 1.874129 TGACCGAGGTGGATTATGGT 58.126 50.000 0.00 0.00 42.00 3.55
2450 2490 1.484653 TGACCGAGGTGGATTATGGTG 59.515 52.381 0.00 0.00 42.00 4.17
2451 2491 0.837272 ACCGAGGTGGATTATGGTGG 59.163 55.000 0.00 0.00 42.00 4.61
2452 2492 1.128200 CCGAGGTGGATTATGGTGGA 58.872 55.000 0.00 0.00 42.00 4.02
2453 2493 1.070758 CCGAGGTGGATTATGGTGGAG 59.929 57.143 0.00 0.00 42.00 3.86
2454 2494 1.070758 CGAGGTGGATTATGGTGGAGG 59.929 57.143 0.00 0.00 0.00 4.30
2455 2495 1.421646 GAGGTGGATTATGGTGGAGGG 59.578 57.143 0.00 0.00 0.00 4.30
2456 2496 0.478507 GGTGGATTATGGTGGAGGGG 59.521 60.000 0.00 0.00 0.00 4.79
2457 2497 0.478507 GTGGATTATGGTGGAGGGGG 59.521 60.000 0.00 0.00 0.00 5.40
2458 2498 1.360393 TGGATTATGGTGGAGGGGGC 61.360 60.000 0.00 0.00 0.00 5.80
2459 2499 1.360393 GGATTATGGTGGAGGGGGCA 61.360 60.000 0.00 0.00 0.00 5.36
2460 2500 0.178990 GATTATGGTGGAGGGGGCAC 60.179 60.000 0.00 0.00 0.00 5.01
2461 2501 0.627469 ATTATGGTGGAGGGGGCACT 60.627 55.000 0.00 0.00 0.00 4.40
2462 2502 1.570857 TTATGGTGGAGGGGGCACTG 61.571 60.000 0.00 0.00 0.00 3.66
2472 2512 4.697756 GGGCACTGCACACGGCTA 62.698 66.667 2.82 0.00 45.15 3.93
2473 2513 2.668212 GGCACTGCACACGGCTAA 60.668 61.111 2.82 0.00 45.15 3.09
2474 2514 2.680913 GGCACTGCACACGGCTAAG 61.681 63.158 2.82 0.00 45.15 2.18
2475 2515 1.667830 GCACTGCACACGGCTAAGA 60.668 57.895 0.00 0.00 45.15 2.10
2476 2516 1.630244 GCACTGCACACGGCTAAGAG 61.630 60.000 0.00 0.00 45.15 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
290 293 2.596346 TGGCCACAATGTTTGTCTCAT 58.404 42.857 0.00 0.00 43.23 2.90
559 562 1.066858 CGACAAGGTAGAGTGCCATGT 60.067 52.381 0.00 0.00 40.16 3.21
758 764 8.522830 TGGCATAAGAAGTAAAAATTCAAGGAG 58.477 33.333 0.00 0.00 0.00 3.69
843 849 5.506708 GTCTTTCCCACCATAAGTACCAAT 58.493 41.667 0.00 0.00 0.00 3.16
923 930 2.819608 ACAAAGTTTGTCGCTATGGCAT 59.180 40.909 15.58 4.88 40.56 4.40
982 989 2.774234 CCATTGGAGGTCTAGTCCATGT 59.226 50.000 8.79 0.00 43.78 3.21
1252 1259 0.603975 GCTCCTGCTGAACGTCCTTT 60.604 55.000 0.00 0.00 36.03 3.11
1347 1354 5.600696 TCATGAGCTACATTATTCGCTTCA 58.399 37.500 0.00 0.00 37.07 3.02
1373 1380 5.877012 TCAGAAAATTTAGCTAGTCTGGCAG 59.123 40.000 8.58 8.58 34.57 4.85
1573 1585 8.942033 AGAAAAGGTTACGGGTTTATATATCCT 58.058 33.333 0.00 0.00 0.00 3.24
1598 1611 6.508088 CGCGCTCTAAGAAACCACTTATTAAG 60.508 42.308 5.56 1.79 32.91 1.85
1605 1618 0.601558 TCGCGCTCTAAGAAACCACT 59.398 50.000 5.56 0.00 0.00 4.00
1621 1634 8.290325 CCCTCTACCTTTATTTAAATGAATCGC 58.710 37.037 11.05 0.00 0.00 4.58
1663 1678 7.227049 ACACTTTTCACCGGATTTTTGATAT 57.773 32.000 9.46 0.00 0.00 1.63
1666 1681 4.993029 ACACTTTTCACCGGATTTTTGA 57.007 36.364 9.46 0.00 0.00 2.69
1678 1693 5.113383 ACAGACGTGATGTAACACTTTTCA 58.887 37.500 0.00 0.00 38.47 2.69
1692 1707 1.139256 TGCCCTTTGTTACAGACGTGA 59.861 47.619 0.00 0.00 0.00 4.35
1699 1714 1.145945 TGATGGGTGCCCTTTGTTACA 59.854 47.619 8.91 0.00 36.94 2.41
1700 1715 1.917872 TGATGGGTGCCCTTTGTTAC 58.082 50.000 8.91 0.00 36.94 2.50
1734 1749 2.281484 ATGGTGTGCGTGGGTCAC 60.281 61.111 0.00 0.00 35.14 3.67
1783 1801 2.206576 AGAGGCCTTGATGGTTTGTC 57.793 50.000 6.77 0.00 38.35 3.18
1814 1832 4.653341 TGATTTGATTTGGTTTCCCTGTGT 59.347 37.500 0.00 0.00 0.00 3.72
1819 1837 5.792741 TGTGATGATTTGATTTGGTTTCCC 58.207 37.500 0.00 0.00 0.00 3.97
1821 1839 6.183360 GGCATGTGATGATTTGATTTGGTTTC 60.183 38.462 0.00 0.00 0.00 2.78
1840 1858 2.297033 GTCTGGTGAATGTTTGGCATGT 59.703 45.455 0.00 0.00 37.96 3.21
1841 1859 2.353011 GGTCTGGTGAATGTTTGGCATG 60.353 50.000 0.00 0.00 37.96 4.06
1859 1877 0.668096 TGTGTGTCGTTATGCGGGTC 60.668 55.000 0.00 0.00 41.72 4.46
1879 1899 7.891498 TGGCATAGATGTAGTCTACTTTGTA 57.109 36.000 11.28 2.98 42.06 2.41
1907 1945 0.035598 TGGGGGTCGTTATGTGTGTG 59.964 55.000 0.00 0.00 0.00 3.82
1979 2018 3.134081 GGTTGATGTAGTAGCTAGGGCAA 59.866 47.826 0.00 0.00 41.70 4.52
1990 2029 5.540719 GCTAGGGAATCTAGGTTGATGTAGT 59.459 44.000 0.00 0.00 44.32 2.73
2061 2100 3.453868 TCTGAATGAGGAGGGTGAATCA 58.546 45.455 0.00 0.00 0.00 2.57
2065 2104 4.722526 TTTTTCTGAATGAGGAGGGTGA 57.277 40.909 0.00 0.00 0.00 4.02
2103 2143 3.387374 TGAAACTACTACGTTCCCCAACA 59.613 43.478 0.00 0.00 32.14 3.33
2104 2144 3.993920 TGAAACTACTACGTTCCCCAAC 58.006 45.455 0.00 0.00 0.00 3.77
2105 2145 4.686191 TTGAAACTACTACGTTCCCCAA 57.314 40.909 0.00 0.00 0.00 4.12
2106 2146 4.686191 TTTGAAACTACTACGTTCCCCA 57.314 40.909 0.00 0.00 0.00 4.96
2138 2178 0.374758 CACCATGATACTGCGTGTGC 59.625 55.000 0.00 0.00 43.20 4.57
2139 2179 2.008752 TCACCATGATACTGCGTGTG 57.991 50.000 0.00 0.00 0.00 3.82
2140 2180 2.554142 CATCACCATGATACTGCGTGT 58.446 47.619 0.00 0.00 34.28 4.49
2141 2181 1.262417 GCATCACCATGATACTGCGTG 59.738 52.381 0.00 0.00 34.28 5.34
2142 2182 1.134431 TGCATCACCATGATACTGCGT 60.134 47.619 0.00 0.00 34.28 5.24
2143 2183 1.585297 TGCATCACCATGATACTGCG 58.415 50.000 0.00 0.00 34.28 5.18
2144 2184 3.126514 GCTATGCATCACCATGATACTGC 59.873 47.826 0.19 0.00 34.28 4.40
2145 2185 4.320870 TGCTATGCATCACCATGATACTG 58.679 43.478 0.19 0.00 34.28 2.74
2146 2186 4.628963 TGCTATGCATCACCATGATACT 57.371 40.909 0.19 0.00 34.28 2.12
2147 2187 4.377738 CGTTGCTATGCATCACCATGATAC 60.378 45.833 0.19 0.00 38.76 2.24
2148 2188 3.747529 CGTTGCTATGCATCACCATGATA 59.252 43.478 0.19 0.00 38.76 2.15
2149 2189 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
2150 2190 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
2151 2191 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
2152 2192 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
2153 2193 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
2154 2194 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
2155 2195 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
2156 2196 1.756538 TCCTCTCGTTGCTATGCATCA 59.243 47.619 0.19 0.00 38.76 3.07
2157 2197 2.035193 TCTCCTCTCGTTGCTATGCATC 59.965 50.000 0.19 0.00 38.76 3.91
2158 2198 2.034878 TCTCCTCTCGTTGCTATGCAT 58.965 47.619 3.79 3.79 38.76 3.96
2159 2199 1.406898 CTCTCCTCTCGTTGCTATGCA 59.593 52.381 0.00 0.00 36.47 3.96
2160 2200 1.678627 TCTCTCCTCTCGTTGCTATGC 59.321 52.381 0.00 0.00 0.00 3.14
2161 2201 3.210227 TCTCTCTCCTCTCGTTGCTATG 58.790 50.000 0.00 0.00 0.00 2.23
2162 2202 3.118038 ACTCTCTCTCCTCTCGTTGCTAT 60.118 47.826 0.00 0.00 0.00 2.97
2163 2203 2.237643 ACTCTCTCTCCTCTCGTTGCTA 59.762 50.000 0.00 0.00 0.00 3.49
2164 2204 1.004277 ACTCTCTCTCCTCTCGTTGCT 59.996 52.381 0.00 0.00 0.00 3.91
2165 2205 1.132262 CACTCTCTCTCCTCTCGTTGC 59.868 57.143 0.00 0.00 0.00 4.17
2166 2206 2.432444 ACACTCTCTCTCCTCTCGTTG 58.568 52.381 0.00 0.00 0.00 4.10
2167 2207 2.817258 CAACACTCTCTCTCCTCTCGTT 59.183 50.000 0.00 0.00 0.00 3.85
2168 2208 2.224670 ACAACACTCTCTCTCCTCTCGT 60.225 50.000 0.00 0.00 0.00 4.18
2169 2209 2.418628 GACAACACTCTCTCTCCTCTCG 59.581 54.545 0.00 0.00 0.00 4.04
2170 2210 2.752903 GGACAACACTCTCTCTCCTCTC 59.247 54.545 0.00 0.00 0.00 3.20
2171 2211 2.109128 TGGACAACACTCTCTCTCCTCT 59.891 50.000 0.00 0.00 0.00 3.69
2172 2212 2.230266 GTGGACAACACTCTCTCTCCTC 59.770 54.545 0.00 0.00 46.72 3.71
2173 2213 2.243810 GTGGACAACACTCTCTCTCCT 58.756 52.381 0.00 0.00 46.72 3.69
2174 2214 2.734276 GTGGACAACACTCTCTCTCC 57.266 55.000 0.00 0.00 46.72 3.71
2183 2223 0.665369 CGAGGGTACGTGGACAACAC 60.665 60.000 0.00 0.00 46.78 3.32
2184 2224 1.108727 ACGAGGGTACGTGGACAACA 61.109 55.000 0.00 0.00 44.84 3.33
2185 2225 0.881118 TACGAGGGTACGTGGACAAC 59.119 55.000 0.00 0.00 46.02 3.32
2186 2226 1.167851 CTACGAGGGTACGTGGACAA 58.832 55.000 0.00 0.00 44.98 3.18
2187 2227 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
2188 2228 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
2190 2230 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
2208 2248 0.996462 TCATAACGCTTCCGCTTTCG 59.004 50.000 0.00 0.00 38.22 3.46
2209 2249 1.730064 TGTCATAACGCTTCCGCTTTC 59.270 47.619 0.00 0.00 38.22 2.62
2210 2250 1.803334 TGTCATAACGCTTCCGCTTT 58.197 45.000 0.00 0.00 38.22 3.51
2211 2251 1.463444 GTTGTCATAACGCTTCCGCTT 59.537 47.619 0.00 0.00 38.22 4.68
2212 2252 1.076332 GTTGTCATAACGCTTCCGCT 58.924 50.000 0.00 0.00 38.22 5.52
2213 2253 0.247145 CGTTGTCATAACGCTTCCGC 60.247 55.000 0.00 0.00 36.82 5.54
2214 2254 3.850207 CGTTGTCATAACGCTTCCG 57.150 52.632 0.00 0.00 36.82 4.30
2220 2260 0.785378 TCAACCGCGTTGTCATAACG 59.215 50.000 16.97 1.71 43.23 3.18
2221 2261 2.158841 ACATCAACCGCGTTGTCATAAC 59.841 45.455 16.97 0.00 43.23 1.89
2222 2262 2.418692 ACATCAACCGCGTTGTCATAA 58.581 42.857 16.97 2.99 43.23 1.90
2223 2263 2.087501 ACATCAACCGCGTTGTCATA 57.912 45.000 16.97 3.28 43.23 2.15
2224 2264 1.999735 CTACATCAACCGCGTTGTCAT 59.000 47.619 16.97 5.85 43.23 3.06
2225 2265 1.269883 ACTACATCAACCGCGTTGTCA 60.270 47.619 16.97 4.13 43.23 3.58
2226 2266 1.389106 GACTACATCAACCGCGTTGTC 59.611 52.381 16.97 5.64 43.23 3.18
2227 2267 1.269883 TGACTACATCAACCGCGTTGT 60.270 47.619 16.97 9.99 43.23 3.32
2228 2268 1.424403 TGACTACATCAACCGCGTTG 58.576 50.000 4.92 10.14 43.99 4.10
2229 2269 2.380084 ATGACTACATCAACCGCGTT 57.620 45.000 4.92 0.00 41.93 4.84
2230 2270 2.793585 CGTATGACTACATCAACCGCGT 60.794 50.000 4.92 0.00 41.93 6.01
2231 2271 1.779157 CGTATGACTACATCAACCGCG 59.221 52.381 0.00 0.00 41.93 6.46
2232 2272 2.787680 GACGTATGACTACATCAACCGC 59.212 50.000 0.00 0.00 41.93 5.68
2233 2273 4.288670 AGACGTATGACTACATCAACCG 57.711 45.455 0.00 0.00 41.93 4.44
2234 2274 5.647589 TGAAGACGTATGACTACATCAACC 58.352 41.667 0.00 0.00 41.93 3.77
2235 2275 6.972901 TCATGAAGACGTATGACTACATCAAC 59.027 38.462 0.00 0.00 41.93 3.18
2236 2276 7.095695 TCATGAAGACGTATGACTACATCAA 57.904 36.000 0.00 0.00 41.93 2.57
2237 2277 6.693315 TCATGAAGACGTATGACTACATCA 57.307 37.500 0.00 0.00 43.13 3.07
2238 2278 6.804295 GGATCATGAAGACGTATGACTACATC 59.196 42.308 0.00 0.00 36.26 3.06
2239 2279 6.568653 CGGATCATGAAGACGTATGACTACAT 60.569 42.308 0.00 0.00 36.26 2.29
2240 2280 5.277828 CGGATCATGAAGACGTATGACTACA 60.278 44.000 0.00 0.00 36.26 2.74
2241 2281 5.049612 TCGGATCATGAAGACGTATGACTAC 60.050 44.000 0.00 0.00 36.26 2.73
2242 2282 5.049612 GTCGGATCATGAAGACGTATGACTA 60.050 44.000 0.00 0.00 36.26 2.59
2243 2283 3.883489 TCGGATCATGAAGACGTATGACT 59.117 43.478 0.00 0.00 36.26 3.41
2244 2284 3.975670 GTCGGATCATGAAGACGTATGAC 59.024 47.826 0.00 0.00 36.26 3.06
2245 2285 3.004419 GGTCGGATCATGAAGACGTATGA 59.996 47.826 17.38 1.42 37.68 2.15
2246 2286 3.309388 GGTCGGATCATGAAGACGTATG 58.691 50.000 17.38 0.00 34.68 2.39
2247 2287 2.031069 CGGTCGGATCATGAAGACGTAT 60.031 50.000 17.38 0.00 34.68 3.06
2248 2288 1.332686 CGGTCGGATCATGAAGACGTA 59.667 52.381 17.38 4.97 34.68 3.57
2249 2289 0.100682 CGGTCGGATCATGAAGACGT 59.899 55.000 17.38 0.00 34.68 4.34
2250 2290 0.380733 TCGGTCGGATCATGAAGACG 59.619 55.000 17.38 13.97 34.68 4.18
2251 2291 2.802787 ATCGGTCGGATCATGAAGAC 57.197 50.000 16.34 16.34 0.00 3.01
2260 2300 1.038280 GGTACTTGGATCGGTCGGAT 58.962 55.000 0.00 0.00 38.35 4.18
2261 2301 1.378882 CGGTACTTGGATCGGTCGGA 61.379 60.000 0.00 0.00 0.00 4.55
2262 2302 1.065273 CGGTACTTGGATCGGTCGG 59.935 63.158 0.00 0.00 0.00 4.79
2263 2303 0.452987 TTCGGTACTTGGATCGGTCG 59.547 55.000 0.00 0.00 0.00 4.79
2264 2304 1.796617 CGTTCGGTACTTGGATCGGTC 60.797 57.143 0.00 0.00 0.00 4.79
2265 2305 0.171903 CGTTCGGTACTTGGATCGGT 59.828 55.000 0.00 0.00 0.00 4.69
2266 2306 1.143969 GCGTTCGGTACTTGGATCGG 61.144 60.000 0.00 0.00 0.00 4.18
2267 2307 0.457166 TGCGTTCGGTACTTGGATCG 60.457 55.000 0.00 1.14 0.00 3.69
2268 2308 0.997196 GTGCGTTCGGTACTTGGATC 59.003 55.000 0.00 0.00 0.00 3.36
2269 2309 0.734942 CGTGCGTTCGGTACTTGGAT 60.735 55.000 0.00 0.00 0.00 3.41
2270 2310 1.372004 CGTGCGTTCGGTACTTGGA 60.372 57.895 0.00 0.00 0.00 3.53
2271 2311 2.377310 CCGTGCGTTCGGTACTTGG 61.377 63.158 11.17 0.00 44.77 3.61
2272 2312 3.152703 CCGTGCGTTCGGTACTTG 58.847 61.111 11.17 0.00 44.77 3.16
2288 2328 2.435059 GCTGAACTCGGAGGTGCC 60.435 66.667 10.23 0.00 0.00 5.01
2289 2329 2.029844 GTGCTGAACTCGGAGGTGC 61.030 63.158 10.23 4.15 0.00 5.01
2290 2330 0.946221 GTGTGCTGAACTCGGAGGTG 60.946 60.000 10.23 0.00 0.00 4.00
2291 2331 1.367840 GTGTGCTGAACTCGGAGGT 59.632 57.895 10.23 1.51 0.00 3.85
2292 2332 1.734477 CGTGTGCTGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
2293 2333 3.848142 CGTGTGCTGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
2297 2337 0.233332 GCTGAACGTGTGCTGAACTC 59.767 55.000 0.00 0.00 0.00 3.01
2298 2338 0.179073 AGCTGAACGTGTGCTGAACT 60.179 50.000 8.99 0.00 35.54 3.01
2299 2339 0.233332 GAGCTGAACGTGTGCTGAAC 59.767 55.000 13.62 0.00 37.16 3.18
2300 2340 1.215014 CGAGCTGAACGTGTGCTGAA 61.215 55.000 13.62 0.00 37.16 3.02
2301 2341 1.661509 CGAGCTGAACGTGTGCTGA 60.662 57.895 13.62 0.00 37.16 4.26
2302 2342 1.010935 ATCGAGCTGAACGTGTGCTG 61.011 55.000 13.62 7.51 37.16 4.41
2303 2343 1.010935 CATCGAGCTGAACGTGTGCT 61.011 55.000 9.46 9.46 40.02 4.40
2304 2344 1.008875 TCATCGAGCTGAACGTGTGC 61.009 55.000 0.00 0.00 0.00 4.57
2305 2345 0.710567 GTCATCGAGCTGAACGTGTG 59.289 55.000 0.00 0.00 0.00 3.82
2306 2346 0.729478 CGTCATCGAGCTGAACGTGT 60.729 55.000 0.00 0.00 39.71 4.49
2307 2347 0.729478 ACGTCATCGAGCTGAACGTG 60.729 55.000 12.23 3.66 40.62 4.49
2308 2348 0.454620 GACGTCATCGAGCTGAACGT 60.455 55.000 11.55 12.62 40.62 3.99
2309 2349 1.134530 GGACGTCATCGAGCTGAACG 61.135 60.000 18.91 0.00 40.62 3.95
2310 2350 0.802607 GGGACGTCATCGAGCTGAAC 60.803 60.000 18.91 0.00 40.62 3.18
2311 2351 1.248101 TGGGACGTCATCGAGCTGAA 61.248 55.000 18.91 0.00 40.62 3.02
2312 2352 1.037579 ATGGGACGTCATCGAGCTGA 61.038 55.000 18.91 0.00 40.62 4.26
2313 2353 0.873312 CATGGGACGTCATCGAGCTG 60.873 60.000 18.91 0.81 40.62 4.24
2314 2354 1.037579 TCATGGGACGTCATCGAGCT 61.038 55.000 18.91 0.00 40.62 4.09
2315 2355 0.179111 TTCATGGGACGTCATCGAGC 60.179 55.000 18.91 0.00 40.62 5.03
2316 2356 1.135139 AGTTCATGGGACGTCATCGAG 59.865 52.381 18.91 2.93 40.62 4.04
2317 2357 1.134367 GAGTTCATGGGACGTCATCGA 59.866 52.381 18.91 5.00 40.62 3.59
2318 2358 1.560923 GAGTTCATGGGACGTCATCG 58.439 55.000 18.91 2.46 43.34 3.84
2319 2359 1.802880 CGGAGTTCATGGGACGTCATC 60.803 57.143 18.91 9.49 0.00 2.92
2320 2360 0.175760 CGGAGTTCATGGGACGTCAT 59.824 55.000 18.91 0.10 0.00 3.06
2321 2361 0.896479 TCGGAGTTCATGGGACGTCA 60.896 55.000 18.91 0.00 0.00 4.35
2322 2362 0.460311 ATCGGAGTTCATGGGACGTC 59.540 55.000 7.13 7.13 0.00 4.34
2323 2363 0.460311 GATCGGAGTTCATGGGACGT 59.540 55.000 0.00 0.00 0.00 4.34
2324 2364 0.249489 GGATCGGAGTTCATGGGACG 60.249 60.000 0.00 0.00 0.00 4.79
2325 2365 0.830648 TGGATCGGAGTTCATGGGAC 59.169 55.000 0.00 0.00 0.00 4.46
2326 2366 1.123077 CTGGATCGGAGTTCATGGGA 58.877 55.000 0.00 0.00 0.00 4.37
2327 2367 0.533755 GCTGGATCGGAGTTCATGGG 60.534 60.000 0.00 0.00 0.00 4.00
2328 2368 0.178767 TGCTGGATCGGAGTTCATGG 59.821 55.000 0.00 0.00 0.00 3.66
2329 2369 1.137675 TCTGCTGGATCGGAGTTCATG 59.862 52.381 0.00 0.00 0.00 3.07
2330 2370 1.411977 CTCTGCTGGATCGGAGTTCAT 59.588 52.381 0.00 0.00 35.32 2.57
2331 2371 0.820226 CTCTGCTGGATCGGAGTTCA 59.180 55.000 0.00 0.00 35.32 3.18
2332 2372 0.529555 GCTCTGCTGGATCGGAGTTC 60.530 60.000 2.12 0.00 40.67 3.01
2333 2373 0.975040 AGCTCTGCTGGATCGGAGTT 60.975 55.000 0.00 0.00 40.67 3.01
2334 2374 0.975040 AAGCTCTGCTGGATCGGAGT 60.975 55.000 0.00 0.00 39.62 3.85
2335 2375 0.249405 GAAGCTCTGCTGGATCGGAG 60.249 60.000 0.00 0.00 39.62 4.63
2336 2376 1.819229 GAAGCTCTGCTGGATCGGA 59.181 57.895 0.00 0.00 39.62 4.55
2337 2377 1.591059 CGAAGCTCTGCTGGATCGG 60.591 63.158 0.00 0.00 39.62 4.18
2338 2378 0.594540 CTCGAAGCTCTGCTGGATCG 60.595 60.000 5.97 5.97 39.62 3.69
2339 2379 0.249405 CCTCGAAGCTCTGCTGGATC 60.249 60.000 0.00 0.00 39.62 3.36
2340 2380 1.684386 CCCTCGAAGCTCTGCTGGAT 61.684 60.000 0.00 0.00 39.62 3.41
2341 2381 2.354401 CCCTCGAAGCTCTGCTGGA 61.354 63.158 0.00 0.00 39.62 3.86
2342 2382 2.186384 CCCTCGAAGCTCTGCTGG 59.814 66.667 0.00 0.00 39.62 4.85
2343 2383 1.141449 CTCCCTCGAAGCTCTGCTG 59.859 63.158 0.00 0.00 39.62 4.41
2344 2384 1.000270 TCTCCCTCGAAGCTCTGCT 60.000 57.895 0.00 0.00 42.56 4.24
2345 2385 1.319614 ACTCTCCCTCGAAGCTCTGC 61.320 60.000 0.00 0.00 0.00 4.26
2346 2386 1.181786 AACTCTCCCTCGAAGCTCTG 58.818 55.000 0.00 0.00 0.00 3.35
2347 2387 1.822371 GAAACTCTCCCTCGAAGCTCT 59.178 52.381 0.00 0.00 0.00 4.09
2348 2388 1.546476 TGAAACTCTCCCTCGAAGCTC 59.454 52.381 0.00 0.00 0.00 4.09
2349 2389 1.633774 TGAAACTCTCCCTCGAAGCT 58.366 50.000 0.00 0.00 0.00 3.74
2350 2390 2.682155 ATGAAACTCTCCCTCGAAGC 57.318 50.000 0.00 0.00 0.00 3.86
2351 2391 4.116238 GCTAATGAAACTCTCCCTCGAAG 58.884 47.826 0.00 0.00 0.00 3.79
2352 2392 3.513912 TGCTAATGAAACTCTCCCTCGAA 59.486 43.478 0.00 0.00 0.00 3.71
2353 2393 3.096852 TGCTAATGAAACTCTCCCTCGA 58.903 45.455 0.00 0.00 0.00 4.04
2354 2394 3.190874 GTGCTAATGAAACTCTCCCTCG 58.809 50.000 0.00 0.00 0.00 4.63
2355 2395 3.119101 TCGTGCTAATGAAACTCTCCCTC 60.119 47.826 0.00 0.00 0.00 4.30
2356 2396 2.832129 TCGTGCTAATGAAACTCTCCCT 59.168 45.455 0.00 0.00 0.00 4.20
2357 2397 2.930682 GTCGTGCTAATGAAACTCTCCC 59.069 50.000 0.00 0.00 0.00 4.30
2358 2398 2.599082 CGTCGTGCTAATGAAACTCTCC 59.401 50.000 0.00 0.00 0.00 3.71
2359 2399 2.599082 CCGTCGTGCTAATGAAACTCTC 59.401 50.000 0.00 0.00 0.00 3.20
2360 2400 2.029290 ACCGTCGTGCTAATGAAACTCT 60.029 45.455 0.00 0.00 0.00 3.24
2361 2401 2.092211 CACCGTCGTGCTAATGAAACTC 59.908 50.000 0.00 0.00 32.04 3.01
2362 2402 2.066262 CACCGTCGTGCTAATGAAACT 58.934 47.619 0.00 0.00 32.04 2.66
2363 2403 2.063266 TCACCGTCGTGCTAATGAAAC 58.937 47.619 0.00 0.00 40.04 2.78
2364 2404 2.442212 TCACCGTCGTGCTAATGAAA 57.558 45.000 0.00 0.00 40.04 2.69
2365 2405 2.094442 TCATCACCGTCGTGCTAATGAA 60.094 45.455 0.00 0.00 40.04 2.57
2366 2406 1.474879 TCATCACCGTCGTGCTAATGA 59.525 47.619 0.00 0.00 40.04 2.57
2367 2407 1.921243 TCATCACCGTCGTGCTAATG 58.079 50.000 0.00 0.00 40.04 1.90
2368 2408 2.100749 TCATCATCACCGTCGTGCTAAT 59.899 45.455 0.00 0.00 40.04 1.73
2369 2409 1.474879 TCATCATCACCGTCGTGCTAA 59.525 47.619 0.00 0.00 40.04 3.09
2370 2410 1.099689 TCATCATCACCGTCGTGCTA 58.900 50.000 0.00 0.00 40.04 3.49
2371 2411 0.461548 ATCATCATCACCGTCGTGCT 59.538 50.000 0.00 0.00 40.04 4.40
2372 2412 0.578683 CATCATCATCACCGTCGTGC 59.421 55.000 0.00 0.00 40.04 5.34
2373 2413 0.578683 GCATCATCATCACCGTCGTG 59.421 55.000 0.00 0.00 41.72 4.35
2374 2414 0.461548 AGCATCATCATCACCGTCGT 59.538 50.000 0.00 0.00 0.00 4.34
2375 2415 2.054363 GTAGCATCATCATCACCGTCG 58.946 52.381 0.00 0.00 0.00 5.12
2376 2416 3.055591 CAGTAGCATCATCATCACCGTC 58.944 50.000 0.00 0.00 0.00 4.79
2377 2417 2.224137 CCAGTAGCATCATCATCACCGT 60.224 50.000 0.00 0.00 0.00 4.83
2378 2418 2.410939 CCAGTAGCATCATCATCACCG 58.589 52.381 0.00 0.00 0.00 4.94
2379 2419 2.149578 GCCAGTAGCATCATCATCACC 58.850 52.381 0.00 0.00 42.97 4.02
2380 2420 1.797046 CGCCAGTAGCATCATCATCAC 59.203 52.381 0.00 0.00 44.04 3.06
2381 2421 1.875157 GCGCCAGTAGCATCATCATCA 60.875 52.381 0.00 0.00 44.04 3.07
2382 2422 0.795085 GCGCCAGTAGCATCATCATC 59.205 55.000 0.00 0.00 44.04 2.92
2383 2423 0.107268 TGCGCCAGTAGCATCATCAT 59.893 50.000 4.18 0.00 44.04 2.45
2384 2424 0.531311 CTGCGCCAGTAGCATCATCA 60.531 55.000 4.18 0.00 44.26 3.07
2385 2425 1.226686 CCTGCGCCAGTAGCATCATC 61.227 60.000 4.18 0.00 44.26 2.92
2386 2426 1.227764 CCTGCGCCAGTAGCATCAT 60.228 57.895 4.18 0.00 44.26 2.45
2387 2427 2.187685 CCTGCGCCAGTAGCATCA 59.812 61.111 4.18 0.00 44.26 3.07
2388 2428 2.590007 CCCTGCGCCAGTAGCATC 60.590 66.667 4.18 0.00 44.26 3.91
2389 2429 4.864334 GCCCTGCGCCAGTAGCAT 62.864 66.667 4.18 0.00 44.26 3.79
2391 2431 4.785453 AAGCCCTGCGCCAGTAGC 62.785 66.667 4.18 7.85 38.78 3.58
2392 2432 2.512515 GAAGCCCTGCGCCAGTAG 60.513 66.667 4.18 0.00 38.78 2.57
2393 2433 3.318384 TGAAGCCCTGCGCCAGTA 61.318 61.111 4.18 0.00 38.78 2.74
2397 2437 3.622060 TTAGGTGAAGCCCTGCGCC 62.622 63.158 4.18 0.00 38.78 6.53
2398 2438 2.046314 TTAGGTGAAGCCCTGCGC 60.046 61.111 0.00 0.00 38.26 6.09
2399 2439 4.208632 CTTAGGTGAAGCCCTGCG 57.791 61.111 0.00 0.00 38.26 5.18
2406 2446 1.067142 TGTAGCGGTGCTTAGGTGAAG 60.067 52.381 3.95 0.00 40.44 3.02
2407 2447 0.970640 TGTAGCGGTGCTTAGGTGAA 59.029 50.000 3.95 0.00 40.44 3.18
2408 2448 0.970640 TTGTAGCGGTGCTTAGGTGA 59.029 50.000 3.95 0.00 40.44 4.02
2409 2449 2.024176 ATTGTAGCGGTGCTTAGGTG 57.976 50.000 3.95 0.00 40.44 4.00
2410 2450 3.386726 TCATATTGTAGCGGTGCTTAGGT 59.613 43.478 3.95 0.00 40.44 3.08
2411 2451 3.741344 GTCATATTGTAGCGGTGCTTAGG 59.259 47.826 3.95 0.00 40.44 2.69
2412 2452 3.741344 GGTCATATTGTAGCGGTGCTTAG 59.259 47.826 3.95 0.00 40.44 2.18
2413 2453 3.724374 GGTCATATTGTAGCGGTGCTTA 58.276 45.455 3.95 0.00 40.44 3.09
2414 2454 2.561569 GGTCATATTGTAGCGGTGCTT 58.438 47.619 3.95 0.00 40.44 3.91
2415 2455 1.538204 CGGTCATATTGTAGCGGTGCT 60.538 52.381 3.95 0.00 43.41 4.40
2416 2456 0.859232 CGGTCATATTGTAGCGGTGC 59.141 55.000 0.00 0.00 33.22 5.01
2417 2457 2.394708 CTCGGTCATATTGTAGCGGTG 58.605 52.381 0.00 0.00 37.22 4.94
2418 2458 1.340248 CCTCGGTCATATTGTAGCGGT 59.660 52.381 0.00 0.00 37.22 5.68
2419 2459 1.340248 ACCTCGGTCATATTGTAGCGG 59.660 52.381 0.00 0.00 37.22 5.52
2420 2460 2.394708 CACCTCGGTCATATTGTAGCG 58.605 52.381 0.00 0.00 37.92 4.26
2421 2461 2.364324 TCCACCTCGGTCATATTGTAGC 59.636 50.000 0.00 0.00 35.57 3.58
2422 2462 4.873746 ATCCACCTCGGTCATATTGTAG 57.126 45.455 0.00 0.00 35.57 2.74
2423 2463 6.295632 CCATAATCCACCTCGGTCATATTGTA 60.296 42.308 0.00 0.00 35.57 2.41
2424 2464 5.513094 CCATAATCCACCTCGGTCATATTGT 60.513 44.000 0.00 0.00 35.57 2.71
2425 2465 4.937620 CCATAATCCACCTCGGTCATATTG 59.062 45.833 0.00 0.00 35.57 1.90
2426 2466 4.597507 ACCATAATCCACCTCGGTCATATT 59.402 41.667 0.00 0.00 35.57 1.28
2427 2467 4.020218 CACCATAATCCACCTCGGTCATAT 60.020 45.833 0.00 0.00 35.57 1.78
2428 2468 3.323691 CACCATAATCCACCTCGGTCATA 59.676 47.826 0.00 0.00 35.57 2.15
2429 2469 2.104792 CACCATAATCCACCTCGGTCAT 59.895 50.000 0.00 0.00 35.57 3.06
2430 2470 1.484653 CACCATAATCCACCTCGGTCA 59.515 52.381 0.00 0.00 35.57 4.02
2431 2471 1.202651 CCACCATAATCCACCTCGGTC 60.203 57.143 0.00 0.00 35.57 4.79
2432 2472 0.837272 CCACCATAATCCACCTCGGT 59.163 55.000 0.00 0.00 35.57 4.69
2433 2473 1.070758 CTCCACCATAATCCACCTCGG 59.929 57.143 0.00 0.00 0.00 4.63
2434 2474 1.070758 CCTCCACCATAATCCACCTCG 59.929 57.143 0.00 0.00 0.00 4.63
2435 2475 1.421646 CCCTCCACCATAATCCACCTC 59.578 57.143 0.00 0.00 0.00 3.85
2436 2476 1.522900 CCCTCCACCATAATCCACCT 58.477 55.000 0.00 0.00 0.00 4.00
2437 2477 0.478507 CCCCTCCACCATAATCCACC 59.521 60.000 0.00 0.00 0.00 4.61
2438 2478 0.478507 CCCCCTCCACCATAATCCAC 59.521 60.000 0.00 0.00 0.00 4.02
2439 2479 1.360393 GCCCCCTCCACCATAATCCA 61.360 60.000 0.00 0.00 0.00 3.41
2440 2480 1.360393 TGCCCCCTCCACCATAATCC 61.360 60.000 0.00 0.00 0.00 3.01
2441 2481 0.178990 GTGCCCCCTCCACCATAATC 60.179 60.000 0.00 0.00 0.00 1.75
2442 2482 0.627469 AGTGCCCCCTCCACCATAAT 60.627 55.000 0.00 0.00 33.75 1.28
2443 2483 1.230149 AGTGCCCCCTCCACCATAA 60.230 57.895 0.00 0.00 33.75 1.90
2444 2484 2.000701 CAGTGCCCCCTCCACCATA 61.001 63.158 0.00 0.00 33.75 2.74
2445 2485 3.341629 CAGTGCCCCCTCCACCAT 61.342 66.667 0.00 0.00 33.75 3.55
2455 2495 4.697756 TAGCCGTGTGCAGTGCCC 62.698 66.667 13.72 0.28 44.83 5.36
2456 2496 2.668212 TTAGCCGTGTGCAGTGCC 60.668 61.111 13.72 4.57 44.83 5.01
2457 2497 1.630244 CTCTTAGCCGTGTGCAGTGC 61.630 60.000 8.58 8.58 44.83 4.40
2458 2498 2.449548 CTCTTAGCCGTGTGCAGTG 58.550 57.895 0.00 0.00 44.83 3.66
2459 2499 4.996976 CTCTTAGCCGTGTGCAGT 57.003 55.556 0.00 0.00 44.83 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.