Multiple sequence alignment - TraesCS1A01G437200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G437200 chr1A 100.000 4284 0 0 1 4284 586926928 586922645 0.000000e+00 7912.0
1 TraesCS1A01G437200 chr1A 81.733 2031 300 43 2316 4284 586518622 586516601 0.000000e+00 1629.0
2 TraesCS1A01G437200 chr1A 82.249 1921 275 45 2418 4284 586332539 586330631 0.000000e+00 1598.0
3 TraesCS1A01G437200 chr1A 79.690 1999 321 43 2344 4284 586410256 586408285 0.000000e+00 1363.0
4 TraesCS1A01G437200 chr1A 81.602 1598 211 49 2418 3963 586362289 586360723 0.000000e+00 1245.0
5 TraesCS1A01G437200 chr1A 79.544 1843 282 59 2338 4108 586712571 586710752 0.000000e+00 1227.0
6 TraesCS1A01G437200 chr1A 78.696 1948 321 60 2340 4213 586316319 586314392 0.000000e+00 1212.0
7 TraesCS1A01G437200 chr1A 82.753 1235 157 28 1064 2272 586519830 586518626 0.000000e+00 1050.0
8 TraesCS1A01G437200 chr1A 78.760 1629 269 46 2709 4284 586381336 586379732 0.000000e+00 1020.0
9 TraesCS1A01G437200 chr1A 83.258 1105 153 20 1063 2144 586334089 586332994 0.000000e+00 987.0
10 TraesCS1A01G437200 chr1A 84.095 1006 136 14 1063 2049 586366302 586365302 0.000000e+00 950.0
11 TraesCS1A01G437200 chr1A 81.579 1026 151 26 1063 2080 586317742 586316747 0.000000e+00 813.0
12 TraesCS1A01G437200 chr1A 81.500 1027 152 26 1063 2080 586348129 586347132 0.000000e+00 809.0
13 TraesCS1A01G437200 chr1D 84.396 3294 394 65 1063 4284 487897313 487894068 0.000000e+00 3125.0
14 TraesCS1A01G437200 chr1D 84.371 2105 286 25 2215 4281 488483956 488486055 0.000000e+00 2025.0
15 TraesCS1A01G437200 chr1D 78.201 1945 330 66 2340 4210 487840302 487838378 0.000000e+00 1157.0
16 TraesCS1A01G437200 chr1D 79.739 1303 198 40 1063 2338 487841759 487840496 0.000000e+00 883.0
17 TraesCS1A01G437200 chr1D 87.658 316 17 7 1 316 487898057 487897764 8.820000e-92 348.0
18 TraesCS1A01G437200 chr1D 86.441 177 10 2 489 665 487897597 487897435 9.460000e-42 182.0
19 TraesCS1A01G437200 chr1D 89.516 124 4 2 330 453 487897683 487897569 9.600000e-32 148.0
20 TraesCS1A01G437200 chrUn 84.133 2105 288 30 2215 4281 8844936 8842840 0.000000e+00 1995.0
21 TraesCS1A01G437200 chrUn 84.539 1009 124 13 1063 2053 8845995 8845001 0.000000e+00 970.0
22 TraesCS1A01G437200 chr1B 82.551 2023 293 36 2316 4284 679709299 679707283 0.000000e+00 1725.0
23 TraesCS1A01G437200 chr1B 80.459 1873 295 43 2463 4284 679700332 679698480 0.000000e+00 1365.0
24 TraesCS1A01G437200 chr1B 82.353 1241 177 24 1063 2272 679710532 679709303 0.000000e+00 1040.0
25 TraesCS1A01G437200 chr1B 90.769 65 5 1 908 971 7701933 7701997 7.630000e-13 86.1
26 TraesCS1A01G437200 chr4A 75.625 1879 332 81 2483 4282 729685290 729687121 0.000000e+00 817.0
27 TraesCS1A01G437200 chr4A 74.933 1871 349 84 2492 4282 729706908 729708738 0.000000e+00 747.0
28 TraesCS1A01G437200 chr4A 74.318 1869 377 73 2483 4282 718927473 718925639 0.000000e+00 697.0
29 TraesCS1A01G437200 chr4A 75.802 748 116 35 2913 3621 730067390 730066669 6.910000e-83 318.0
30 TraesCS1A01G437200 chr4A 73.666 862 193 29 3441 4282 729747110 729747957 1.940000e-78 303.0
31 TraesCS1A01G437200 chr4A 73.202 862 194 30 3441 4282 729148430 729149274 1.170000e-70 278.0
32 TraesCS1A01G437200 chr7D 73.742 636 141 23 3441 4060 10047553 10048178 4.310000e-55 226.0
33 TraesCS1A01G437200 chr2B 94.828 58 3 0 909 966 410944310 410944367 1.640000e-14 91.6
34 TraesCS1A01G437200 chr4D 95.122 41 2 0 549 589 391053881 391053841 9.940000e-07 65.8
35 TraesCS1A01G437200 chr4D 94.872 39 1 1 552 589 483559925 483559963 4.630000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G437200 chr1A 586922645 586926928 4283 True 7912.00 7912 100.00000 1 4284 1 chr1A.!!$R5 4283
1 TraesCS1A01G437200 chr1A 586408285 586410256 1971 True 1363.00 1363 79.69000 2344 4284 1 chr1A.!!$R3 1940
2 TraesCS1A01G437200 chr1A 586516601 586519830 3229 True 1339.50 1629 82.24300 1064 4284 2 chr1A.!!$R9 3220
3 TraesCS1A01G437200 chr1A 586330631 586334089 3458 True 1292.50 1598 82.75350 1063 4284 2 chr1A.!!$R7 3221
4 TraesCS1A01G437200 chr1A 586710752 586712571 1819 True 1227.00 1227 79.54400 2338 4108 1 chr1A.!!$R4 1770
5 TraesCS1A01G437200 chr1A 586360723 586366302 5579 True 1097.50 1245 82.84850 1063 3963 2 chr1A.!!$R8 2900
6 TraesCS1A01G437200 chr1A 586379732 586381336 1604 True 1020.00 1020 78.76000 2709 4284 1 chr1A.!!$R2 1575
7 TraesCS1A01G437200 chr1A 586314392 586317742 3350 True 1012.50 1212 80.13750 1063 4213 2 chr1A.!!$R6 3150
8 TraesCS1A01G437200 chr1A 586347132 586348129 997 True 809.00 809 81.50000 1063 2080 1 chr1A.!!$R1 1017
9 TraesCS1A01G437200 chr1D 488483956 488486055 2099 False 2025.00 2025 84.37100 2215 4281 1 chr1D.!!$F1 2066
10 TraesCS1A01G437200 chr1D 487838378 487841759 3381 True 1020.00 1157 78.97000 1063 4210 2 chr1D.!!$R1 3147
11 TraesCS1A01G437200 chr1D 487894068 487898057 3989 True 950.75 3125 87.00275 1 4284 4 chr1D.!!$R2 4283
12 TraesCS1A01G437200 chrUn 8842840 8845995 3155 True 1482.50 1995 84.33600 1063 4281 2 chrUn.!!$R1 3218
13 TraesCS1A01G437200 chr1B 679707283 679710532 3249 True 1382.50 1725 82.45200 1063 4284 2 chr1B.!!$R2 3221
14 TraesCS1A01G437200 chr1B 679698480 679700332 1852 True 1365.00 1365 80.45900 2463 4284 1 chr1B.!!$R1 1821
15 TraesCS1A01G437200 chr4A 729685290 729687121 1831 False 817.00 817 75.62500 2483 4282 1 chr4A.!!$F2 1799
16 TraesCS1A01G437200 chr4A 729706908 729708738 1830 False 747.00 747 74.93300 2492 4282 1 chr4A.!!$F3 1790
17 TraesCS1A01G437200 chr4A 718925639 718927473 1834 True 697.00 697 74.31800 2483 4282 1 chr4A.!!$R1 1799
18 TraesCS1A01G437200 chr4A 730066669 730067390 721 True 318.00 318 75.80200 2913 3621 1 chr4A.!!$R2 708
19 TraesCS1A01G437200 chr4A 729747110 729747957 847 False 303.00 303 73.66600 3441 4282 1 chr4A.!!$F4 841
20 TraesCS1A01G437200 chr4A 729148430 729149274 844 False 278.00 278 73.20200 3441 4282 1 chr4A.!!$F1 841
21 TraesCS1A01G437200 chr7D 10047553 10048178 625 False 226.00 226 73.74200 3441 4060 1 chr7D.!!$F1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.033504 TCGTGAAAGCACTCCTCACC 59.966 55.0 7.07 0.00 42.93 4.02 F
768 836 0.108992 TACAACTAGTTGCCGCTCCG 60.109 55.0 30.97 9.33 44.03 4.63 F
870 938 0.175760 CCTAGTTTGCTGCTCCGCTA 59.824 55.0 0.00 0.00 0.00 4.26 F
919 987 0.242825 TAACTCAGCAACTCCGTCGG 59.757 55.0 4.39 4.39 0.00 4.79 F
944 1012 0.609406 CGAGTGGAGTCTGGAGTGGA 60.609 60.0 0.00 0.00 0.00 4.02 F
946 1014 0.780637 AGTGGAGTCTGGAGTGGAGA 59.219 55.0 0.00 0.00 0.00 3.71 F
1049 1117 0.809385 CTTGCTTCACAGATGGCTGG 59.191 55.0 0.00 0.00 46.60 4.85 F
1056 1124 0.813184 CACAGATGGCTGGCGAAATT 59.187 50.0 0.00 0.00 46.60 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 1116 0.098728 CCGATGGTCACAATTTCGCC 59.901 55.000 0.00 0.0 0.00 5.54 R
2130 4774 2.159014 CGCCCTACCAGTTTAGCACATA 60.159 50.000 0.00 0.0 0.00 2.29 R
2312 5016 2.846206 TCCATGTCTATCACAAAGGCCT 59.154 45.455 0.00 0.0 38.97 5.19 R
2628 5587 2.941453 GTCATTCTGACAGGCTACGA 57.059 50.000 1.81 0.0 46.22 3.43 R
2659 5618 5.784177 TCACTGAGAGGTTTCAATCTGTAC 58.216 41.667 0.00 0.0 0.00 2.90 R
3148 6120 0.321122 CTCTGCAACACACCTCCTCC 60.321 60.000 0.00 0.0 0.00 4.30 R
3187 6162 1.063174 GCGCACTTGCTTAGGATCAAG 59.937 52.381 0.30 0.0 43.79 3.02 R
3289 6280 2.665165 AGTTGCTCCATCACCAACAAA 58.335 42.857 5.66 0.0 40.85 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.280592 GAACGTGCGGAAGTGGGT 60.281 61.111 0.00 0.00 0.00 4.51
71 72 4.953868 TCGCGTGGGGTTGTCGTG 62.954 66.667 5.77 0.00 36.60 4.35
72 73 4.953868 CGCGTGGGGTTGTCGTGA 62.954 66.667 0.00 0.00 37.28 4.35
74 75 2.181521 GCGTGGGGTTGTCGTGAAA 61.182 57.895 0.00 0.00 0.00 2.69
75 76 1.938861 CGTGGGGTTGTCGTGAAAG 59.061 57.895 0.00 0.00 0.00 2.62
76 77 1.652563 GTGGGGTTGTCGTGAAAGC 59.347 57.895 0.00 0.00 0.00 3.51
77 78 1.098712 GTGGGGTTGTCGTGAAAGCA 61.099 55.000 0.00 0.00 0.00 3.91
78 79 1.098712 TGGGGTTGTCGTGAAAGCAC 61.099 55.000 0.00 0.00 41.67 4.40
79 80 0.818040 GGGGTTGTCGTGAAAGCACT 60.818 55.000 0.00 0.00 42.93 4.40
81 82 0.586802 GGTTGTCGTGAAAGCACTCC 59.413 55.000 0.00 0.00 42.93 3.85
82 83 1.583054 GTTGTCGTGAAAGCACTCCT 58.417 50.000 0.00 0.00 42.93 3.69
83 84 1.527311 GTTGTCGTGAAAGCACTCCTC 59.473 52.381 0.00 0.00 42.93 3.71
84 85 0.750249 TGTCGTGAAAGCACTCCTCA 59.250 50.000 0.00 0.00 42.93 3.86
85 86 1.140816 GTCGTGAAAGCACTCCTCAC 58.859 55.000 0.00 3.78 42.93 3.51
86 87 0.033504 TCGTGAAAGCACTCCTCACC 59.966 55.000 7.07 0.00 42.93 4.02
87 88 0.249868 CGTGAAAGCACTCCTCACCA 60.250 55.000 7.07 0.00 42.93 4.17
88 89 1.517242 GTGAAAGCACTCCTCACCAG 58.483 55.000 0.00 0.00 41.84 4.00
91 92 1.070758 GAAAGCACTCCTCACCAGTCA 59.929 52.381 0.00 0.00 0.00 3.41
105 106 0.242286 CAGTCACCACTCACTCCTCG 59.758 60.000 0.00 0.00 0.00 4.63
117 118 2.680352 TCCTCGCTCCCACTGACC 60.680 66.667 0.00 0.00 0.00 4.02
129 130 2.060980 ACTGACCGGCTCATCTCCC 61.061 63.158 0.00 0.00 0.00 4.30
133 134 1.457831 ACCGGCTCATCTCCCCTAC 60.458 63.158 0.00 0.00 0.00 3.18
134 135 2.210711 CCGGCTCATCTCCCCTACC 61.211 68.421 0.00 0.00 0.00 3.18
139 140 2.426561 GGCTCATCTCCCCTACCTAGTT 60.427 54.545 0.00 0.00 0.00 2.24
143 144 3.536434 TCATCTCCCCTACCTAGTTCCTT 59.464 47.826 0.00 0.00 0.00 3.36
151 152 0.896226 ACCTAGTTCCTTCCAGCGTC 59.104 55.000 0.00 0.00 0.00 5.19
152 153 0.179134 CCTAGTTCCTTCCAGCGTCG 60.179 60.000 0.00 0.00 0.00 5.12
153 154 0.802607 CTAGTTCCTTCCAGCGTCGC 60.803 60.000 9.80 9.80 0.00 5.19
154 155 2.221906 TAGTTCCTTCCAGCGTCGCC 62.222 60.000 14.86 0.00 0.00 5.54
155 156 3.311110 TTCCTTCCAGCGTCGCCT 61.311 61.111 14.86 0.00 0.00 5.52
156 157 3.296709 TTCCTTCCAGCGTCGCCTC 62.297 63.158 14.86 0.00 0.00 4.70
170 171 3.002371 CCTCCCCTTCTCCTTGCC 58.998 66.667 0.00 0.00 0.00 4.52
188 189 0.877071 CCAGCACACACAATCCAGAC 59.123 55.000 0.00 0.00 0.00 3.51
193 194 2.047274 ACACAATCCAGACCCGCG 60.047 61.111 0.00 0.00 0.00 6.46
270 271 1.045911 GTCCGCCTCCTCTCCTTCAT 61.046 60.000 0.00 0.00 0.00 2.57
274 275 1.745264 CCTCCTCTCCTTCATCCGC 59.255 63.158 0.00 0.00 0.00 5.54
327 363 3.678289 CACATCAGGTGGTTCATTCAGA 58.322 45.455 0.00 0.00 44.04 3.27
350 418 5.073311 TGAGTAGATTCAGTGCCACTTAC 57.927 43.478 0.00 0.00 0.00 2.34
361 429 2.921754 GTGCCACTTACGCTGTACTTAG 59.078 50.000 0.00 0.00 0.00 2.18
411 479 0.896923 TTCACCCATCTGCCAAATGC 59.103 50.000 0.00 0.00 41.77 3.56
412 480 0.971959 TCACCCATCTGCCAAATGCC 60.972 55.000 0.00 0.00 40.16 4.40
413 481 1.686800 ACCCATCTGCCAAATGCCC 60.687 57.895 0.00 0.00 40.16 5.36
414 482 1.686455 CCCATCTGCCAAATGCCCA 60.686 57.895 0.00 0.00 40.16 5.36
415 483 1.266160 CCCATCTGCCAAATGCCCAA 61.266 55.000 0.00 0.00 40.16 4.12
416 484 0.614294 CCATCTGCCAAATGCCCAAA 59.386 50.000 0.00 0.00 40.16 3.28
417 485 1.210967 CCATCTGCCAAATGCCCAAAT 59.789 47.619 0.00 0.00 40.16 2.32
418 486 2.285083 CATCTGCCAAATGCCCAAATG 58.715 47.619 0.00 0.00 40.16 2.32
419 487 1.350071 TCTGCCAAATGCCCAAATGT 58.650 45.000 0.00 0.00 40.16 2.71
420 488 1.002201 TCTGCCAAATGCCCAAATGTG 59.998 47.619 0.00 0.00 40.16 3.21
421 489 0.763652 TGCCAAATGCCCAAATGTGT 59.236 45.000 0.00 0.00 40.16 3.72
422 490 1.142465 TGCCAAATGCCCAAATGTGTT 59.858 42.857 0.00 0.00 40.16 3.32
423 491 1.536331 GCCAAATGCCCAAATGTGTTG 59.464 47.619 0.00 0.00 0.00 3.33
424 492 2.848691 CCAAATGCCCAAATGTGTTGT 58.151 42.857 0.00 0.00 0.00 3.32
425 493 3.212685 CCAAATGCCCAAATGTGTTGTT 58.787 40.909 0.00 0.00 0.00 2.83
426 494 3.003482 CCAAATGCCCAAATGTGTTGTTG 59.997 43.478 0.00 0.00 0.00 3.33
427 495 3.557228 AATGCCCAAATGTGTTGTTGT 57.443 38.095 0.00 0.00 0.00 3.32
428 496 4.679373 AATGCCCAAATGTGTTGTTGTA 57.321 36.364 0.00 0.00 0.00 2.41
429 497 4.888326 ATGCCCAAATGTGTTGTTGTAT 57.112 36.364 0.00 0.00 0.00 2.29
430 498 4.679373 TGCCCAAATGTGTTGTTGTATT 57.321 36.364 0.00 0.00 0.00 1.89
431 499 4.375272 TGCCCAAATGTGTTGTTGTATTG 58.625 39.130 0.00 0.00 0.00 1.90
432 500 4.141846 TGCCCAAATGTGTTGTTGTATTGT 60.142 37.500 0.00 0.00 0.00 2.71
433 501 4.813697 GCCCAAATGTGTTGTTGTATTGTT 59.186 37.500 0.00 0.00 0.00 2.83
434 502 5.277250 GCCCAAATGTGTTGTTGTATTGTTG 60.277 40.000 0.00 0.00 0.00 3.33
435 503 5.814705 CCCAAATGTGTTGTTGTATTGTTGT 59.185 36.000 0.00 0.00 0.00 3.32
436 504 6.238049 CCCAAATGTGTTGTTGTATTGTTGTG 60.238 38.462 0.00 0.00 0.00 3.33
437 505 6.533012 CCAAATGTGTTGTTGTATTGTTGTGA 59.467 34.615 0.00 0.00 0.00 3.58
438 506 7.063898 CCAAATGTGTTGTTGTATTGTTGTGAA 59.936 33.333 0.00 0.00 0.00 3.18
439 507 8.602328 CAAATGTGTTGTTGTATTGTTGTGAAT 58.398 29.630 0.00 0.00 0.00 2.57
440 508 7.928908 ATGTGTTGTTGTATTGTTGTGAATC 57.071 32.000 0.00 0.00 0.00 2.52
441 509 6.269315 TGTGTTGTTGTATTGTTGTGAATCC 58.731 36.000 0.00 0.00 0.00 3.01
442 510 6.127619 TGTGTTGTTGTATTGTTGTGAATCCA 60.128 34.615 0.00 0.00 0.00 3.41
443 511 6.922957 GTGTTGTTGTATTGTTGTGAATCCAT 59.077 34.615 0.00 0.00 0.00 3.41
444 512 7.114811 GTGTTGTTGTATTGTTGTGAATCCATC 59.885 37.037 0.00 0.00 0.00 3.51
445 513 7.014134 TGTTGTTGTATTGTTGTGAATCCATCT 59.986 33.333 0.00 0.00 0.00 2.90
446 514 6.912082 TGTTGTATTGTTGTGAATCCATCTG 58.088 36.000 0.00 0.00 0.00 2.90
447 515 6.714356 TGTTGTATTGTTGTGAATCCATCTGA 59.286 34.615 0.00 0.00 0.00 3.27
448 516 7.230309 TGTTGTATTGTTGTGAATCCATCTGAA 59.770 33.333 0.00 0.00 0.00 3.02
449 517 7.757941 TGTATTGTTGTGAATCCATCTGAAA 57.242 32.000 0.00 0.00 0.00 2.69
450 518 8.175925 TGTATTGTTGTGAATCCATCTGAAAA 57.824 30.769 0.00 0.00 0.00 2.29
451 519 8.081633 TGTATTGTTGTGAATCCATCTGAAAAC 58.918 33.333 0.00 0.00 0.00 2.43
452 520 5.452078 TGTTGTGAATCCATCTGAAAACC 57.548 39.130 0.00 0.00 0.00 3.27
453 521 4.280677 TGTTGTGAATCCATCTGAAAACCC 59.719 41.667 0.00 0.00 0.00 4.11
454 522 4.387026 TGTGAATCCATCTGAAAACCCT 57.613 40.909 0.00 0.00 0.00 4.34
455 523 4.739793 TGTGAATCCATCTGAAAACCCTT 58.260 39.130 0.00 0.00 0.00 3.95
456 524 4.523943 TGTGAATCCATCTGAAAACCCTTG 59.476 41.667 0.00 0.00 0.00 3.61
457 525 3.511146 TGAATCCATCTGAAAACCCTTGC 59.489 43.478 0.00 0.00 0.00 4.01
458 526 2.673775 TCCATCTGAAAACCCTTGCA 57.326 45.000 0.00 0.00 0.00 4.08
459 527 2.956132 TCCATCTGAAAACCCTTGCAA 58.044 42.857 0.00 0.00 0.00 4.08
460 528 3.303938 TCCATCTGAAAACCCTTGCAAA 58.696 40.909 0.00 0.00 0.00 3.68
461 529 3.708631 TCCATCTGAAAACCCTTGCAAAA 59.291 39.130 0.00 0.00 0.00 2.44
462 530 4.163078 TCCATCTGAAAACCCTTGCAAAAA 59.837 37.500 0.00 0.00 0.00 1.94
494 562 7.121168 TCCATCTGAAAATCCATTGAGTTGTAC 59.879 37.037 0.00 0.00 0.00 2.90
524 592 8.723365 TGTGAACCCATCTAAATCCAGTATATT 58.277 33.333 0.00 0.00 0.00 1.28
525 593 9.574516 GTGAACCCATCTAAATCCAGTATATTT 57.425 33.333 0.00 0.00 0.00 1.40
556 624 9.662947 GAACCCTATGTATTGTTTTACTACACT 57.337 33.333 0.00 0.00 0.00 3.55
567 635 5.300034 TGTTTTACTACACTCTCCGTCTCAA 59.700 40.000 0.00 0.00 0.00 3.02
568 636 6.183360 TGTTTTACTACACTCTCCGTCTCAAA 60.183 38.462 0.00 0.00 0.00 2.69
569 637 6.395426 TTTACTACACTCTCCGTCTCAAAA 57.605 37.500 0.00 0.00 0.00 2.44
570 638 6.585695 TTACTACACTCTCCGTCTCAAAAT 57.414 37.500 0.00 0.00 0.00 1.82
571 639 7.692460 TTACTACACTCTCCGTCTCAAAATA 57.308 36.000 0.00 0.00 0.00 1.40
572 640 6.585695 ACTACACTCTCCGTCTCAAAATAA 57.414 37.500 0.00 0.00 0.00 1.40
573 641 6.622549 ACTACACTCTCCGTCTCAAAATAAG 58.377 40.000 0.00 0.00 0.00 1.73
574 642 5.470047 ACACTCTCCGTCTCAAAATAAGT 57.530 39.130 0.00 0.00 0.00 2.24
575 643 6.585695 ACACTCTCCGTCTCAAAATAAGTA 57.414 37.500 0.00 0.00 0.00 2.24
576 644 7.171630 ACACTCTCCGTCTCAAAATAAGTAT 57.828 36.000 0.00 0.00 0.00 2.12
577 645 7.259161 ACACTCTCCGTCTCAAAATAAGTATC 58.741 38.462 0.00 0.00 0.00 2.24
578 646 7.122948 ACACTCTCCGTCTCAAAATAAGTATCT 59.877 37.037 0.00 0.00 0.00 1.98
579 647 7.646130 CACTCTCCGTCTCAAAATAAGTATCTC 59.354 40.741 0.00 0.00 0.00 2.75
604 672 8.364142 TCAAATTTAGTGACACTTATTTTGGGG 58.636 33.333 25.99 15.87 33.02 4.96
605 673 8.364142 CAAATTTAGTGACACTTATTTTGGGGA 58.636 33.333 22.39 0.33 30.70 4.81
606 674 8.664669 AATTTAGTGACACTTATTTTGGGGAT 57.335 30.769 14.50 0.00 0.00 3.85
608 676 4.344104 AGTGACACTTATTTTGGGGATGG 58.656 43.478 1.07 0.00 0.00 3.51
609 677 4.044065 AGTGACACTTATTTTGGGGATGGA 59.956 41.667 1.07 0.00 0.00 3.41
611 679 3.365472 ACACTTATTTTGGGGATGGAGC 58.635 45.455 0.00 0.00 0.00 4.70
612 680 2.358898 CACTTATTTTGGGGATGGAGCG 59.641 50.000 0.00 0.00 0.00 5.03
613 681 2.025321 ACTTATTTTGGGGATGGAGCGT 60.025 45.455 0.00 0.00 0.00 5.07
654 722 7.823745 AAAATGTATTGTCATGGACCTATCC 57.176 36.000 0.00 0.00 46.48 2.59
665 733 1.614413 GGACCTATCCGCAGACTTAGG 59.386 57.143 0.00 0.00 37.75 2.69
666 734 1.000052 GACCTATCCGCAGACTTAGGC 60.000 57.143 0.00 0.00 35.62 3.93
667 735 1.333177 CCTATCCGCAGACTTAGGCT 58.667 55.000 0.00 0.00 0.00 4.58
668 736 1.000283 CCTATCCGCAGACTTAGGCTG 60.000 57.143 11.37 11.37 36.47 4.85
669 737 1.683917 CTATCCGCAGACTTAGGCTGT 59.316 52.381 17.22 0.00 35.81 4.40
670 738 0.176680 ATCCGCAGACTTAGGCTGTG 59.823 55.000 20.80 20.80 42.08 3.66
671 739 1.185618 TCCGCAGACTTAGGCTGTGT 61.186 55.000 24.77 0.00 41.13 3.72
672 740 0.320771 CCGCAGACTTAGGCTGTGTT 60.321 55.000 24.77 0.00 41.13 3.32
673 741 1.512926 CGCAGACTTAGGCTGTGTTT 58.487 50.000 19.63 0.00 38.66 2.83
674 742 1.195448 CGCAGACTTAGGCTGTGTTTG 59.805 52.381 19.63 2.63 38.66 2.93
675 743 1.537202 GCAGACTTAGGCTGTGTTTGG 59.463 52.381 17.22 0.00 35.81 3.28
676 744 1.537202 CAGACTTAGGCTGTGTTTGGC 59.463 52.381 6.97 0.00 0.00 4.52
677 745 1.142870 AGACTTAGGCTGTGTTTGGCA 59.857 47.619 0.00 0.00 0.00 4.92
678 746 1.537202 GACTTAGGCTGTGTTTGGCAG 59.463 52.381 0.00 0.00 37.06 4.85
683 751 3.359002 CTGTGTTTGGCAGCCCTC 58.641 61.111 9.64 0.00 0.00 4.30
684 752 2.203480 TGTGTTTGGCAGCCCTCC 60.203 61.111 9.64 0.00 0.00 4.30
685 753 2.203480 GTGTTTGGCAGCCCTCCA 60.203 61.111 9.64 0.00 0.00 3.86
686 754 2.203480 TGTTTGGCAGCCCTCCAC 60.203 61.111 9.64 0.46 32.45 4.02
687 755 3.365265 GTTTGGCAGCCCTCCACG 61.365 66.667 9.64 0.00 32.45 4.94
688 756 4.659172 TTTGGCAGCCCTCCACGG 62.659 66.667 9.64 0.00 32.45 4.94
696 764 4.087892 CCCTCCACGGCTCCACTG 62.088 72.222 0.00 0.00 0.00 3.66
697 765 4.767255 CCTCCACGGCTCCACTGC 62.767 72.222 0.00 0.00 0.00 4.40
698 766 3.699894 CTCCACGGCTCCACTGCT 61.700 66.667 0.00 0.00 0.00 4.24
699 767 3.655810 CTCCACGGCTCCACTGCTC 62.656 68.421 0.00 0.00 0.00 4.26
703 771 4.803426 CGGCTCCACTGCTCGGTC 62.803 72.222 0.00 0.00 0.00 4.79
704 772 3.695606 GGCTCCACTGCTCGGTCA 61.696 66.667 0.00 0.00 0.00 4.02
705 773 2.433318 GCTCCACTGCTCGGTCAC 60.433 66.667 0.00 0.00 0.00 3.67
706 774 2.126307 CTCCACTGCTCGGTCACG 60.126 66.667 0.00 0.00 42.74 4.35
707 775 3.633094 CTCCACTGCTCGGTCACGG 62.633 68.421 0.00 0.00 41.39 4.94
708 776 3.680786 CCACTGCTCGGTCACGGA 61.681 66.667 0.00 0.00 41.39 4.69
709 777 2.126307 CACTGCTCGGTCACGGAG 60.126 66.667 8.01 8.01 41.39 4.63
710 778 4.057428 ACTGCTCGGTCACGGAGC 62.057 66.667 26.31 26.31 40.87 4.70
732 800 2.202851 CGGAGCAGAGCATCGCTT 60.203 61.111 0.00 0.00 43.03 4.68
733 801 1.812922 CGGAGCAGAGCATCGCTTT 60.813 57.895 0.00 0.00 43.03 3.51
734 802 0.528466 CGGAGCAGAGCATCGCTTTA 60.528 55.000 0.00 0.00 43.03 1.85
735 803 1.216122 GGAGCAGAGCATCGCTTTAG 58.784 55.000 0.00 0.00 43.03 1.85
736 804 0.581053 GAGCAGAGCATCGCTTTAGC 59.419 55.000 0.00 0.00 43.03 3.09
737 805 0.177604 AGCAGAGCATCGCTTTAGCT 59.822 50.000 0.00 0.00 40.91 3.32
738 806 0.304098 GCAGAGCATCGCTTTAGCTG 59.696 55.000 0.00 0.00 39.88 4.24
739 807 0.304098 CAGAGCATCGCTTTAGCTGC 59.696 55.000 0.00 7.63 39.88 5.25
740 808 4.950479 AGCATCGCTTTAGCTGCT 57.050 50.000 7.57 7.57 44.40 4.24
741 809 2.687842 AGCATCGCTTTAGCTGCTC 58.312 52.632 4.91 0.00 45.55 4.26
742 810 0.813210 AGCATCGCTTTAGCTGCTCC 60.813 55.000 4.91 0.00 45.55 4.70
743 811 1.091771 GCATCGCTTTAGCTGCTCCA 61.092 55.000 4.91 0.00 38.63 3.86
744 812 1.590932 CATCGCTTTAGCTGCTCCAT 58.409 50.000 4.91 0.00 39.32 3.41
745 813 2.759191 CATCGCTTTAGCTGCTCCATA 58.241 47.619 4.91 0.00 39.32 2.74
746 814 2.979814 TCGCTTTAGCTGCTCCATAA 57.020 45.000 4.91 0.00 39.32 1.90
747 815 2.826428 TCGCTTTAGCTGCTCCATAAG 58.174 47.619 4.91 7.34 39.32 1.73
748 816 2.168521 TCGCTTTAGCTGCTCCATAAGT 59.831 45.455 4.91 0.00 39.32 2.24
749 817 2.939103 CGCTTTAGCTGCTCCATAAGTT 59.061 45.455 4.91 0.00 39.32 2.66
750 818 4.119862 CGCTTTAGCTGCTCCATAAGTTA 58.880 43.478 4.91 0.00 39.32 2.24
751 819 4.025647 CGCTTTAGCTGCTCCATAAGTTAC 60.026 45.833 4.91 0.00 39.32 2.50
752 820 4.876107 GCTTTAGCTGCTCCATAAGTTACA 59.124 41.667 4.91 0.00 38.21 2.41
753 821 5.354234 GCTTTAGCTGCTCCATAAGTTACAA 59.646 40.000 4.91 0.00 38.21 2.41
754 822 6.675728 GCTTTAGCTGCTCCATAAGTTACAAC 60.676 42.308 4.91 0.00 38.21 3.32
755 823 4.559862 AGCTGCTCCATAAGTTACAACT 57.440 40.909 0.00 0.00 42.04 3.16
756 824 5.677319 AGCTGCTCCATAAGTTACAACTA 57.323 39.130 0.00 0.00 38.57 2.24
757 825 5.665459 AGCTGCTCCATAAGTTACAACTAG 58.335 41.667 0.00 0.00 38.57 2.57
758 826 5.187967 AGCTGCTCCATAAGTTACAACTAGT 59.812 40.000 0.00 0.00 38.57 2.57
759 827 5.875359 GCTGCTCCATAAGTTACAACTAGTT 59.125 40.000 1.12 1.12 38.57 2.24
760 828 6.183360 GCTGCTCCATAAGTTACAACTAGTTG 60.183 42.308 29.76 29.76 45.58 3.16
761 829 5.642063 TGCTCCATAAGTTACAACTAGTTGC 59.358 40.000 30.97 17.39 44.03 4.17
762 830 5.064834 GCTCCATAAGTTACAACTAGTTGCC 59.935 44.000 30.97 20.18 44.03 4.52
763 831 5.172934 TCCATAAGTTACAACTAGTTGCCG 58.827 41.667 30.97 12.13 44.03 5.69
764 832 4.201783 CCATAAGTTACAACTAGTTGCCGC 60.202 45.833 30.97 21.06 44.03 6.53
765 833 2.833631 AGTTACAACTAGTTGCCGCT 57.166 45.000 30.97 22.64 44.03 5.52
766 834 2.685100 AGTTACAACTAGTTGCCGCTC 58.315 47.619 30.97 18.09 44.03 5.03
767 835 1.730612 GTTACAACTAGTTGCCGCTCC 59.269 52.381 30.97 12.51 44.03 4.70
768 836 0.108992 TACAACTAGTTGCCGCTCCG 60.109 55.000 30.97 9.33 44.03 4.63
769 837 2.434359 AACTAGTTGCCGCTCCGC 60.434 61.111 7.48 0.00 0.00 5.54
770 838 2.943978 AACTAGTTGCCGCTCCGCT 61.944 57.895 7.48 0.00 0.00 5.52
771 839 2.583593 CTAGTTGCCGCTCCGCTC 60.584 66.667 0.00 0.00 0.00 5.03
772 840 4.143333 TAGTTGCCGCTCCGCTCC 62.143 66.667 0.00 0.00 0.00 4.70
795 863 3.701454 GGAGTCCGAACAGGCTCT 58.299 61.111 0.00 0.00 40.59 4.09
796 864 1.976112 GGAGTCCGAACAGGCTCTT 59.024 57.895 0.00 0.00 40.59 2.85
797 865 1.183549 GGAGTCCGAACAGGCTCTTA 58.816 55.000 0.00 0.00 40.59 2.10
798 866 1.135333 GGAGTCCGAACAGGCTCTTAG 59.865 57.143 0.00 0.00 40.59 2.18
799 867 1.135333 GAGTCCGAACAGGCTCTTAGG 59.865 57.143 0.00 0.00 38.93 2.69
800 868 0.460459 GTCCGAACAGGCTCTTAGGC 60.460 60.000 0.00 0.00 41.73 3.93
807 875 4.966123 GGCTCTTAGGCCCTGTTC 57.034 61.111 0.00 0.00 45.92 3.18
808 876 1.153349 GGCTCTTAGGCCCTGTTCG 60.153 63.158 0.00 0.00 45.92 3.95
809 877 1.153349 GCTCTTAGGCCCTGTTCGG 60.153 63.158 0.00 0.00 0.00 4.30
810 878 1.900545 GCTCTTAGGCCCTGTTCGGT 61.901 60.000 0.00 0.00 0.00 4.69
811 879 0.613777 CTCTTAGGCCCTGTTCGGTT 59.386 55.000 0.00 0.00 0.00 4.44
812 880 1.829222 CTCTTAGGCCCTGTTCGGTTA 59.171 52.381 0.00 0.00 0.00 2.85
813 881 2.434702 CTCTTAGGCCCTGTTCGGTTAT 59.565 50.000 0.00 0.00 0.00 1.89
814 882 2.433239 TCTTAGGCCCTGTTCGGTTATC 59.567 50.000 0.00 0.00 0.00 1.75
815 883 1.125633 TAGGCCCTGTTCGGTTATCC 58.874 55.000 0.00 0.00 0.00 2.59
816 884 0.912487 AGGCCCTGTTCGGTTATCCA 60.912 55.000 0.00 0.00 0.00 3.41
817 885 0.746923 GGCCCTGTTCGGTTATCCAC 60.747 60.000 0.00 0.00 0.00 4.02
818 886 0.746923 GCCCTGTTCGGTTATCCACC 60.747 60.000 0.00 0.00 43.16 4.61
825 893 2.509422 GGTTATCCACCGGCTCCC 59.491 66.667 0.00 0.00 35.12 4.30
826 894 2.509422 GTTATCCACCGGCTCCCC 59.491 66.667 0.00 0.00 0.00 4.81
827 895 2.041430 TTATCCACCGGCTCCCCA 59.959 61.111 0.00 0.00 0.00 4.96
828 896 1.616930 TTATCCACCGGCTCCCCAA 60.617 57.895 0.00 0.00 0.00 4.12
829 897 1.208844 TTATCCACCGGCTCCCCAAA 61.209 55.000 0.00 0.00 0.00 3.28
830 898 1.208844 TATCCACCGGCTCCCCAAAA 61.209 55.000 0.00 0.00 0.00 2.44
831 899 1.874299 ATCCACCGGCTCCCCAAAAT 61.874 55.000 0.00 0.00 0.00 1.82
832 900 1.609210 CCACCGGCTCCCCAAAATT 60.609 57.895 0.00 0.00 0.00 1.82
833 901 1.191489 CCACCGGCTCCCCAAAATTT 61.191 55.000 0.00 0.00 0.00 1.82
834 902 0.246360 CACCGGCTCCCCAAAATTTC 59.754 55.000 0.00 0.00 0.00 2.17
835 903 0.178947 ACCGGCTCCCCAAAATTTCA 60.179 50.000 0.00 0.00 0.00 2.69
836 904 0.532115 CCGGCTCCCCAAAATTTCAG 59.468 55.000 0.00 0.00 0.00 3.02
837 905 0.532115 CGGCTCCCCAAAATTTCAGG 59.468 55.000 0.00 0.00 0.00 3.86
838 906 0.904649 GGCTCCCCAAAATTTCAGGG 59.095 55.000 17.69 17.69 42.44 4.45
839 907 1.552254 GGCTCCCCAAAATTTCAGGGA 60.552 52.381 23.56 22.38 46.54 4.20
843 911 3.711863 TCCCCAAAATTTCAGGGATCTG 58.288 45.455 23.56 11.31 43.81 2.90
844 912 2.169144 CCCCAAAATTTCAGGGATCTGC 59.831 50.000 23.56 0.00 45.80 4.26
845 913 2.159198 CCCAAAATTTCAGGGATCTGCG 60.159 50.000 19.21 0.00 45.80 5.18
846 914 2.159198 CCAAAATTTCAGGGATCTGCGG 60.159 50.000 0.00 0.00 40.69 5.69
847 915 2.754552 CAAAATTTCAGGGATCTGCGGA 59.245 45.455 0.00 0.00 40.69 5.54
848 916 2.338577 AATTTCAGGGATCTGCGGAG 57.661 50.000 0.00 0.00 40.69 4.63
866 934 2.175236 GCACCTAGTTTGCTGCTCC 58.825 57.895 0.00 0.00 37.00 4.70
867 935 1.639298 GCACCTAGTTTGCTGCTCCG 61.639 60.000 0.00 0.00 37.00 4.63
868 936 1.376037 ACCTAGTTTGCTGCTCCGC 60.376 57.895 0.00 0.00 0.00 5.54
869 937 1.078848 CCTAGTTTGCTGCTCCGCT 60.079 57.895 0.00 0.00 0.00 5.52
870 938 0.175760 CCTAGTTTGCTGCTCCGCTA 59.824 55.000 0.00 0.00 0.00 4.26
871 939 1.405526 CCTAGTTTGCTGCTCCGCTAA 60.406 52.381 0.00 0.00 0.00 3.09
872 940 2.555199 CTAGTTTGCTGCTCCGCTAAT 58.445 47.619 0.00 0.00 0.00 1.73
873 941 1.826385 AGTTTGCTGCTCCGCTAATT 58.174 45.000 0.00 0.00 0.00 1.40
874 942 2.162681 AGTTTGCTGCTCCGCTAATTT 58.837 42.857 0.00 0.00 0.00 1.82
875 943 3.343617 AGTTTGCTGCTCCGCTAATTTA 58.656 40.909 0.00 0.00 0.00 1.40
876 944 3.375299 AGTTTGCTGCTCCGCTAATTTAG 59.625 43.478 0.00 0.00 0.00 1.85
887 955 3.560636 GCTAATTTAGCCTGGAGTGGA 57.439 47.619 16.10 0.00 45.95 4.02
888 956 3.471680 GCTAATTTAGCCTGGAGTGGAG 58.528 50.000 16.10 0.00 45.95 3.86
889 957 3.134804 GCTAATTTAGCCTGGAGTGGAGA 59.865 47.826 16.10 0.00 45.95 3.71
890 958 3.922171 AATTTAGCCTGGAGTGGAGAG 57.078 47.619 0.00 0.00 0.00 3.20
891 959 2.623418 TTTAGCCTGGAGTGGAGAGA 57.377 50.000 0.00 0.00 0.00 3.10
892 960 1.853963 TTAGCCTGGAGTGGAGAGAC 58.146 55.000 0.00 0.00 0.00 3.36
893 961 1.003646 TAGCCTGGAGTGGAGAGACT 58.996 55.000 0.00 0.00 0.00 3.24
894 962 0.324275 AGCCTGGAGTGGAGAGACTC 60.324 60.000 0.00 0.00 41.55 3.36
906 974 2.729194 GAGAGACTCCAGGCTAACTCA 58.271 52.381 0.00 0.00 0.00 3.41
907 975 2.687935 GAGAGACTCCAGGCTAACTCAG 59.312 54.545 0.00 0.00 0.00 3.35
918 986 1.618861 CTAACTCAGCAACTCCGTCG 58.381 55.000 0.00 0.00 0.00 5.12
919 987 0.242825 TAACTCAGCAACTCCGTCGG 59.757 55.000 4.39 4.39 0.00 4.79
920 988 2.811317 CTCAGCAACTCCGTCGGC 60.811 66.667 6.34 0.00 0.00 5.54
921 989 3.288308 CTCAGCAACTCCGTCGGCT 62.288 63.158 6.34 0.00 36.99 5.52
922 990 2.811317 CAGCAACTCCGTCGGCTC 60.811 66.667 6.34 0.00 33.60 4.70
923 991 4.070552 AGCAACTCCGTCGGCTCC 62.071 66.667 6.34 0.00 28.71 4.70
938 1006 3.062466 TCCGCGAGTGGAGTCTGG 61.062 66.667 8.23 0.00 33.05 3.86
939 1007 3.062466 CCGCGAGTGGAGTCTGGA 61.062 66.667 8.23 0.00 0.00 3.86
940 1008 2.487428 CGCGAGTGGAGTCTGGAG 59.513 66.667 0.00 0.00 0.00 3.86
941 1009 2.336478 CGCGAGTGGAGTCTGGAGT 61.336 63.158 0.00 0.00 0.00 3.85
942 1010 1.214062 GCGAGTGGAGTCTGGAGTG 59.786 63.158 0.00 0.00 0.00 3.51
943 1011 1.886585 CGAGTGGAGTCTGGAGTGG 59.113 63.158 0.00 0.00 0.00 4.00
944 1012 0.609406 CGAGTGGAGTCTGGAGTGGA 60.609 60.000 0.00 0.00 0.00 4.02
945 1013 1.181786 GAGTGGAGTCTGGAGTGGAG 58.818 60.000 0.00 0.00 0.00 3.86
946 1014 0.780637 AGTGGAGTCTGGAGTGGAGA 59.219 55.000 0.00 0.00 0.00 3.71
947 1015 1.181786 GTGGAGTCTGGAGTGGAGAG 58.818 60.000 0.00 0.00 0.00 3.20
948 1016 1.076438 TGGAGTCTGGAGTGGAGAGA 58.924 55.000 0.00 0.00 0.00 3.10
949 1017 1.272203 TGGAGTCTGGAGTGGAGAGAC 60.272 57.143 0.00 0.00 37.05 3.36
951 1019 2.507407 AGTCTGGAGTGGAGAGACTC 57.493 55.000 0.00 0.00 42.22 3.36
961 1029 0.812549 GGAGAGACTCCGAACACTCC 59.187 60.000 0.00 0.00 41.08 3.85
980 1048 2.696707 TCCCTTAGTTCACAGACGTTGT 59.303 45.455 0.00 0.00 41.94 3.32
1049 1117 0.809385 CTTGCTTCACAGATGGCTGG 59.191 55.000 0.00 0.00 46.60 4.85
1056 1124 0.813184 CACAGATGGCTGGCGAAATT 59.187 50.000 0.00 0.00 46.60 1.82
1128 1223 3.334054 GGGGTCAGGAAGCAGGCT 61.334 66.667 0.00 0.00 0.00 4.58
1276 1374 4.862574 TGGAGAATTGTATTGACGACTTCG 59.137 41.667 0.00 0.00 46.33 3.79
1494 1592 2.201436 CTCGGCTGCGAGCGGTATAT 62.201 60.000 5.75 0.00 43.62 0.86
1584 1682 2.967201 TCGGAAGAAACTCAAGGTGGTA 59.033 45.455 0.00 0.00 37.03 3.25
1593 1691 5.772393 AACTCAAGGTGGTATCCATTGTA 57.228 39.130 0.00 0.00 35.28 2.41
1599 1697 6.617784 TCAAGGTGGTATCCATTGTAGGATTA 59.382 38.462 0.23 0.00 46.12 1.75
1635 1733 2.572290 ACTACACTTGCCAAACAGGTC 58.428 47.619 0.00 0.00 36.23 3.85
1923 2049 7.083062 ACTGATATTTATCCATCCAAGCTGA 57.917 36.000 0.00 0.00 31.71 4.26
1924 2050 6.939163 ACTGATATTTATCCATCCAAGCTGAC 59.061 38.462 0.00 0.00 31.71 3.51
1936 2079 1.406539 CAAGCTGACTGTTTGGTGCTT 59.593 47.619 0.00 0.00 40.74 3.91
2035 2197 3.088532 TGGTATGTTTTCCATCCAGTGC 58.911 45.455 0.00 0.00 34.86 4.40
2084 4708 2.969821 AAACCCATGTGCCTTCAGTA 57.030 45.000 0.00 0.00 0.00 2.74
2106 4743 8.480853 CAGTAAGAAGAGTGTTTCTAAAAGACG 58.519 37.037 0.00 0.00 36.42 4.18
2146 4792 6.043854 TGTGACATATGTGCTAAACTGGTA 57.956 37.500 14.43 0.00 0.00 3.25
2149 4795 5.036117 ACATATGTGCTAAACTGGTAGGG 57.964 43.478 7.78 0.00 0.00 3.53
2150 4796 2.420058 ATGTGCTAAACTGGTAGGGC 57.580 50.000 0.00 0.00 0.00 5.19
2198 4849 4.600111 GGATAAACATACCCCTCCATACCA 59.400 45.833 0.00 0.00 0.00 3.25
2270 4967 7.050377 CCAGTTCACATATCTGGTACTGATTT 58.950 38.462 12.39 0.00 44.62 2.17
2273 4970 9.167311 AGTTCACATATCTGGTACTGATTTTTC 57.833 33.333 7.10 0.00 44.62 2.29
2274 4971 8.946085 GTTCACATATCTGGTACTGATTTTTCA 58.054 33.333 7.10 0.00 44.62 2.69
2279 4976 9.293404 CATATCTGGTACTGATTTTTCATCCAT 57.707 33.333 7.10 0.00 44.62 3.41
2297 4994 3.258622 TCCATGCATGCAAGATTTGTGAA 59.741 39.130 26.68 0.00 0.00 3.18
2305 5009 7.226128 TGCATGCAAGATTTGTGAATGTTTTTA 59.774 29.630 20.30 0.00 0.00 1.52
2423 5378 8.352942 CCATATATCCTTTTTGCTTGAACCTAC 58.647 37.037 0.00 0.00 0.00 3.18
2453 5409 9.430838 GTCAAGATTTTGATGATTTCGTCTATG 57.569 33.333 1.53 0.00 44.62 2.23
2455 5411 9.992910 CAAGATTTTGATGATTTCGTCTATGAA 57.007 29.630 1.78 0.00 36.36 2.57
2545 5504 2.744166 CGATGTGTGGGATGAATCAGCT 60.744 50.000 0.00 0.00 0.00 4.24
2614 5573 9.658799 AGTAGAGTAATAGTTACAACACGAGTA 57.341 33.333 0.00 0.00 38.60 2.59
2623 5582 5.532406 AGTTACAACACGAGTAGAAGGTGTA 59.468 40.000 0.00 0.00 43.59 2.90
2628 5587 4.525024 ACACGAGTAGAAGGTGTAGCTAT 58.475 43.478 0.00 0.00 42.65 2.97
2727 5687 6.349300 TCTTGAATAGAGTATTTGGGTCTGC 58.651 40.000 0.00 0.00 0.00 4.26
3148 6120 6.544931 TGATTCAGCCTTATGAAAATGAGGAG 59.455 38.462 0.99 0.00 42.21 3.69
3187 6162 3.254060 AGTACACGACATGATGCTTGAC 58.746 45.455 0.00 0.00 0.00 3.18
3289 6280 4.390264 TCGTCGATTATCTCTGACATCCT 58.610 43.478 0.00 0.00 31.76 3.24
3304 6307 3.424703 ACATCCTTTGTTGGTGATGGAG 58.575 45.455 0.00 0.00 39.08 3.86
3343 6350 5.295292 AGCCTATCACAAGTTCGATCATTTG 59.705 40.000 0.00 0.00 0.00 2.32
3350 6357 4.153986 CAAGTTCGATCATTTGCACTGTC 58.846 43.478 0.00 0.00 0.00 3.51
3428 6444 3.527507 TCAGGACAGTTCTAGTGGAGT 57.472 47.619 0.00 0.00 0.00 3.85
3434 6450 2.834549 ACAGTTCTAGTGGAGTCATGGG 59.165 50.000 0.00 0.00 0.00 4.00
3457 6473 1.065418 CCCTTGACCTCACCGCTATTT 60.065 52.381 0.00 0.00 0.00 1.40
3499 6521 8.033038 TGAGGTACTTGTATGTTTCAGTATCAC 58.967 37.037 0.00 0.00 41.55 3.06
3516 6538 0.317160 CACGTCTTGTACAGCTCCCA 59.683 55.000 0.00 0.00 0.00 4.37
3563 6585 0.107654 GAGACGCTGGCCATACCTTT 60.108 55.000 5.51 0.00 40.22 3.11
3625 6650 4.705507 TGTCTCGCTTGTCCTATCTTAGTT 59.294 41.667 0.00 0.00 0.00 2.24
3696 6738 7.333672 TCACTACGCAGTCTGATAATATATCGT 59.666 37.037 3.32 2.95 43.93 3.73
3697 6739 8.601476 CACTACGCAGTCTGATAATATATCGTA 58.399 37.037 3.32 3.98 43.93 3.43
3710 6770 9.477484 GATAATATATCGTATGGTGACCAATCC 57.523 37.037 9.06 0.00 36.95 3.01
3722 6797 0.749454 ACCAATCCGAGCATGAAGGC 60.749 55.000 0.00 0.00 0.00 4.35
3744 6819 0.618458 TTATGGGTCTTGGCGAGCTT 59.382 50.000 0.00 0.00 40.01 3.74
3783 6861 5.253096 ACTGGTAATCTATGTGGGGTCTTTT 59.747 40.000 0.00 0.00 0.00 2.27
3812 6890 3.006752 CCAAAACTTGATGCTTTGGCCTA 59.993 43.478 3.32 0.00 42.64 3.93
3823 6901 2.369394 CTTTGGCCTACTCCATTGGAC 58.631 52.381 3.32 0.00 35.77 4.02
3923 7016 6.925610 TCCTTTTCAACATATCGAGGAATG 57.074 37.500 0.00 0.00 0.00 2.67
3947 7043 3.013921 GCGGGTCTGTATTGAATTTCCA 58.986 45.455 0.00 0.00 0.00 3.53
4076 7182 6.544564 TCCCTCGTCAAACTTGAATTTAGTTT 59.455 34.615 11.66 11.66 44.38 2.66
4084 7190 7.623268 AAACTTGAATTTAGTTTGTCGCATC 57.377 32.000 15.00 0.00 42.54 3.91
4149 7255 3.141398 TCTGGAGCACTTCACATTTCAC 58.859 45.455 0.00 0.00 0.00 3.18
4152 7258 3.141398 GGAGCACTTCACATTTCACTCA 58.859 45.455 0.00 0.00 0.00 3.41
4182 7288 5.078683 ACATTATGGCATACCTGGGATTT 57.921 39.130 6.72 0.00 36.63 2.17
4183 7289 5.079643 ACATTATGGCATACCTGGGATTTC 58.920 41.667 6.72 0.00 36.63 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.742201 GCTGCCTCGCGAACCAGA 62.742 66.667 29.16 6.38 0.00 3.86
36 37 2.202146 CGACCGACACGACGACTC 60.202 66.667 0.00 0.00 35.09 3.36
71 72 1.070758 TGACTGGTGAGGAGTGCTTTC 59.929 52.381 0.00 0.00 0.00 2.62
72 73 1.131638 TGACTGGTGAGGAGTGCTTT 58.868 50.000 0.00 0.00 0.00 3.51
74 75 1.476007 GGTGACTGGTGAGGAGTGCT 61.476 60.000 0.00 0.00 0.00 4.40
75 76 1.004440 GGTGACTGGTGAGGAGTGC 60.004 63.158 0.00 0.00 0.00 4.40
76 77 0.034059 GTGGTGACTGGTGAGGAGTG 59.966 60.000 0.00 0.00 0.00 3.51
77 78 0.105453 AGTGGTGACTGGTGAGGAGT 60.105 55.000 0.00 0.00 0.00 3.85
78 79 0.605589 GAGTGGTGACTGGTGAGGAG 59.394 60.000 0.00 0.00 30.16 3.69
79 80 0.105709 TGAGTGGTGACTGGTGAGGA 60.106 55.000 0.00 0.00 30.16 3.71
81 82 1.000283 GAGTGAGTGGTGACTGGTGAG 60.000 57.143 0.00 0.00 30.16 3.51
82 83 1.040646 GAGTGAGTGGTGACTGGTGA 58.959 55.000 0.00 0.00 30.16 4.02
83 84 0.034059 GGAGTGAGTGGTGACTGGTG 59.966 60.000 0.00 0.00 30.16 4.17
84 85 0.105453 AGGAGTGAGTGGTGACTGGT 60.105 55.000 0.00 0.00 30.16 4.00
85 86 0.605589 GAGGAGTGAGTGGTGACTGG 59.394 60.000 0.00 0.00 30.16 4.00
86 87 0.242286 CGAGGAGTGAGTGGTGACTG 59.758 60.000 0.00 0.00 30.16 3.51
87 88 1.528292 GCGAGGAGTGAGTGGTGACT 61.528 60.000 0.00 0.00 33.98 3.41
88 89 1.080434 GCGAGGAGTGAGTGGTGAC 60.080 63.158 0.00 0.00 0.00 3.67
91 92 1.979693 GGAGCGAGGAGTGAGTGGT 60.980 63.158 0.00 0.00 0.00 4.16
105 106 4.459089 GAGCCGGTCAGTGGGAGC 62.459 72.222 1.90 0.00 40.65 4.70
117 118 0.112606 TAGGTAGGGGAGATGAGCCG 59.887 60.000 0.00 0.00 0.00 5.52
129 130 1.409427 CGCTGGAAGGAACTAGGTAGG 59.591 57.143 0.00 0.00 38.49 3.18
133 134 0.179134 CGACGCTGGAAGGAACTAGG 60.179 60.000 0.00 0.00 38.49 3.02
134 135 0.802607 GCGACGCTGGAAGGAACTAG 60.803 60.000 13.73 0.00 38.49 2.57
139 140 3.760035 GAGGCGACGCTGGAAGGA 61.760 66.667 20.77 0.00 0.00 3.36
151 152 2.586792 CAAGGAGAAGGGGAGGCG 59.413 66.667 0.00 0.00 0.00 5.52
152 153 2.273776 GCAAGGAGAAGGGGAGGC 59.726 66.667 0.00 0.00 0.00 4.70
153 154 1.919600 CTGGCAAGGAGAAGGGGAGG 61.920 65.000 0.00 0.00 0.00 4.30
154 155 1.606531 CTGGCAAGGAGAAGGGGAG 59.393 63.158 0.00 0.00 0.00 4.30
155 156 2.606587 GCTGGCAAGGAGAAGGGGA 61.607 63.158 0.00 0.00 0.00 4.81
156 157 2.044551 GCTGGCAAGGAGAAGGGG 60.045 66.667 0.00 0.00 0.00 4.79
170 171 0.877071 GGTCTGGATTGTGTGTGCTG 59.123 55.000 0.00 0.00 0.00 4.41
236 237 4.217159 GACGGGGATCGGGGAACG 62.217 72.222 0.00 0.00 44.45 3.95
237 238 3.858225 GGACGGGGATCGGGGAAC 61.858 72.222 0.00 0.00 44.45 3.62
320 356 5.466058 GGCACTGAATCTACTCATCTGAATG 59.534 44.000 0.00 0.00 0.00 2.67
327 363 4.833478 AAGTGGCACTGAATCTACTCAT 57.167 40.909 22.83 0.00 0.00 2.90
350 418 7.751047 TTTCTTATAAGCACTAAGTACAGCG 57.249 36.000 7.67 0.00 0.00 5.18
411 479 5.814705 ACAACAATACAACAACACATTTGGG 59.185 36.000 0.00 0.00 0.00 4.12
412 480 6.533012 TCACAACAATACAACAACACATTTGG 59.467 34.615 0.00 0.00 0.00 3.28
413 481 7.517343 TCACAACAATACAACAACACATTTG 57.483 32.000 0.00 0.00 0.00 2.32
414 482 8.715191 ATTCACAACAATACAACAACACATTT 57.285 26.923 0.00 0.00 0.00 2.32
415 483 7.437862 GGATTCACAACAATACAACAACACATT 59.562 33.333 0.00 0.00 0.00 2.71
416 484 6.922957 GGATTCACAACAATACAACAACACAT 59.077 34.615 0.00 0.00 0.00 3.21
417 485 6.127619 TGGATTCACAACAATACAACAACACA 60.128 34.615 0.00 0.00 0.00 3.72
418 486 6.269315 TGGATTCACAACAATACAACAACAC 58.731 36.000 0.00 0.00 0.00 3.32
419 487 6.456795 TGGATTCACAACAATACAACAACA 57.543 33.333 0.00 0.00 0.00 3.33
420 488 7.326789 CAGATGGATTCACAACAATACAACAAC 59.673 37.037 0.00 0.00 30.06 3.32
421 489 7.230309 TCAGATGGATTCACAACAATACAACAA 59.770 33.333 0.00 0.00 30.06 2.83
422 490 6.714356 TCAGATGGATTCACAACAATACAACA 59.286 34.615 0.00 0.00 30.06 3.33
423 491 7.144722 TCAGATGGATTCACAACAATACAAC 57.855 36.000 0.00 0.00 30.06 3.32
424 492 7.757941 TTCAGATGGATTCACAACAATACAA 57.242 32.000 0.00 0.00 30.06 2.41
425 493 7.757941 TTTCAGATGGATTCACAACAATACA 57.242 32.000 0.00 0.00 30.86 2.29
426 494 7.542130 GGTTTTCAGATGGATTCACAACAATAC 59.458 37.037 0.00 0.00 0.00 1.89
427 495 7.309744 GGGTTTTCAGATGGATTCACAACAATA 60.310 37.037 0.00 0.00 0.00 1.90
428 496 6.458210 GGTTTTCAGATGGATTCACAACAAT 58.542 36.000 0.00 0.00 0.00 2.71
429 497 5.221422 GGGTTTTCAGATGGATTCACAACAA 60.221 40.000 0.00 0.00 0.00 2.83
430 498 4.280677 GGGTTTTCAGATGGATTCACAACA 59.719 41.667 0.00 0.00 0.00 3.33
431 499 4.524328 AGGGTTTTCAGATGGATTCACAAC 59.476 41.667 0.00 0.00 0.00 3.32
432 500 4.739793 AGGGTTTTCAGATGGATTCACAA 58.260 39.130 0.00 0.00 0.00 3.33
433 501 4.387026 AGGGTTTTCAGATGGATTCACA 57.613 40.909 0.00 0.00 0.00 3.58
434 502 4.619160 GCAAGGGTTTTCAGATGGATTCAC 60.619 45.833 0.00 0.00 0.00 3.18
435 503 3.511146 GCAAGGGTTTTCAGATGGATTCA 59.489 43.478 0.00 0.00 0.00 2.57
436 504 3.511146 TGCAAGGGTTTTCAGATGGATTC 59.489 43.478 0.00 0.00 0.00 2.52
437 505 3.509442 TGCAAGGGTTTTCAGATGGATT 58.491 40.909 0.00 0.00 0.00 3.01
438 506 3.173953 TGCAAGGGTTTTCAGATGGAT 57.826 42.857 0.00 0.00 0.00 3.41
439 507 2.673775 TGCAAGGGTTTTCAGATGGA 57.326 45.000 0.00 0.00 0.00 3.41
440 508 3.749665 TTTGCAAGGGTTTTCAGATGG 57.250 42.857 0.00 0.00 0.00 3.51
463 531 8.599792 ACTCAATGGATTTTCAGATGGATTTTT 58.400 29.630 0.00 0.00 0.00 1.94
464 532 8.142485 ACTCAATGGATTTTCAGATGGATTTT 57.858 30.769 0.00 0.00 0.00 1.82
465 533 7.729124 ACTCAATGGATTTTCAGATGGATTT 57.271 32.000 0.00 0.00 0.00 2.17
466 534 7.179694 ACAACTCAATGGATTTTCAGATGGATT 59.820 33.333 0.00 0.00 0.00 3.01
467 535 6.666546 ACAACTCAATGGATTTTCAGATGGAT 59.333 34.615 0.00 0.00 0.00 3.41
468 536 6.012113 ACAACTCAATGGATTTTCAGATGGA 58.988 36.000 0.00 0.00 0.00 3.41
469 537 6.276832 ACAACTCAATGGATTTTCAGATGG 57.723 37.500 0.00 0.00 0.00 3.51
470 538 7.966753 CAGTACAACTCAATGGATTTTCAGATG 59.033 37.037 0.00 0.00 0.00 2.90
471 539 7.667219 ACAGTACAACTCAATGGATTTTCAGAT 59.333 33.333 0.00 0.00 0.00 2.90
472 540 6.998074 ACAGTACAACTCAATGGATTTTCAGA 59.002 34.615 0.00 0.00 0.00 3.27
473 541 7.206981 ACAGTACAACTCAATGGATTTTCAG 57.793 36.000 0.00 0.00 0.00 3.02
474 542 7.068103 ACAACAGTACAACTCAATGGATTTTCA 59.932 33.333 0.00 0.00 0.00 2.69
475 543 7.379529 CACAACAGTACAACTCAATGGATTTTC 59.620 37.037 0.00 0.00 0.00 2.29
476 544 7.068103 TCACAACAGTACAACTCAATGGATTTT 59.932 33.333 0.00 0.00 0.00 1.82
477 545 6.545666 TCACAACAGTACAACTCAATGGATTT 59.454 34.615 0.00 0.00 0.00 2.17
478 546 6.061441 TCACAACAGTACAACTCAATGGATT 58.939 36.000 0.00 0.00 0.00 3.01
479 547 5.620206 TCACAACAGTACAACTCAATGGAT 58.380 37.500 0.00 0.00 0.00 3.41
480 548 5.029807 TCACAACAGTACAACTCAATGGA 57.970 39.130 0.00 0.00 0.00 3.41
481 549 5.505654 GGTTCACAACAGTACAACTCAATGG 60.506 44.000 0.00 0.00 0.00 3.16
482 550 5.505654 GGGTTCACAACAGTACAACTCAATG 60.506 44.000 0.00 0.00 0.00 2.82
483 551 4.578928 GGGTTCACAACAGTACAACTCAAT 59.421 41.667 0.00 0.00 0.00 2.57
484 552 3.942748 GGGTTCACAACAGTACAACTCAA 59.057 43.478 0.00 0.00 0.00 3.02
485 553 3.055021 TGGGTTCACAACAGTACAACTCA 60.055 43.478 0.00 0.00 0.00 3.41
486 554 3.537580 TGGGTTCACAACAGTACAACTC 58.462 45.455 0.00 0.00 0.00 3.01
487 555 3.637911 TGGGTTCACAACAGTACAACT 57.362 42.857 0.00 0.00 0.00 3.16
494 562 5.009631 TGGATTTAGATGGGTTCACAACAG 58.990 41.667 0.00 0.00 0.00 3.16
525 593 9.802039 AGTAAAACAATACATAGGGTTCAGAAA 57.198 29.630 0.00 0.00 0.00 2.52
542 610 5.300034 TGAGACGGAGAGTGTAGTAAAACAA 59.700 40.000 0.00 0.00 0.00 2.83
556 624 7.640597 TGAGATACTTATTTTGAGACGGAGA 57.359 36.000 0.00 0.00 0.00 3.71
577 645 9.410556 CCCAAAATAAGTGTCACTAAATTTGAG 57.589 33.333 24.54 18.64 31.38 3.02
578 646 8.364142 CCCCAAAATAAGTGTCACTAAATTTGA 58.636 33.333 24.54 0.00 31.38 2.69
579 647 8.364142 TCCCCAAAATAAGTGTCACTAAATTTG 58.636 33.333 19.40 19.73 29.68 2.32
604 672 3.435327 TGTTGTTGAATACACGCTCCATC 59.565 43.478 0.00 0.00 36.21 3.51
605 673 3.407698 TGTTGTTGAATACACGCTCCAT 58.592 40.909 0.00 0.00 36.21 3.41
606 674 2.839975 TGTTGTTGAATACACGCTCCA 58.160 42.857 0.00 0.00 36.21 3.86
608 676 4.203950 TGTTGTTGTTGAATACACGCTC 57.796 40.909 0.00 0.00 36.21 5.03
609 677 4.624336 TTGTTGTTGTTGAATACACGCT 57.376 36.364 0.00 0.00 36.21 5.07
611 679 7.670916 ACATTTTTGTTGTTGTTGAATACACG 58.329 30.769 0.00 0.00 36.21 4.49
654 722 1.195448 CAAACACAGCCTAAGTCTGCG 59.805 52.381 0.00 0.00 35.04 5.18
666 734 2.270986 GGAGGGCTGCCAAACACAG 61.271 63.158 22.05 0.00 38.22 3.66
667 735 2.203480 GGAGGGCTGCCAAACACA 60.203 61.111 22.05 0.00 0.00 3.72
668 736 2.203480 TGGAGGGCTGCCAAACAC 60.203 61.111 22.05 1.96 31.13 3.32
669 737 2.203480 GTGGAGGGCTGCCAAACA 60.203 61.111 22.05 12.45 37.12 2.83
670 738 3.365265 CGTGGAGGGCTGCCAAAC 61.365 66.667 22.05 11.15 37.12 2.93
671 739 4.659172 CCGTGGAGGGCTGCCAAA 62.659 66.667 22.05 0.00 37.12 3.28
679 747 4.087892 CAGTGGAGCCGTGGAGGG 62.088 72.222 0.00 0.00 41.48 4.30
680 748 4.767255 GCAGTGGAGCCGTGGAGG 62.767 72.222 0.00 0.00 44.97 4.30
681 749 3.655810 GAGCAGTGGAGCCGTGGAG 62.656 68.421 0.00 0.00 34.23 3.86
682 750 3.695606 GAGCAGTGGAGCCGTGGA 61.696 66.667 0.00 0.00 34.23 4.02
686 754 4.803426 GACCGAGCAGTGGAGCCG 62.803 72.222 0.00 0.00 34.23 5.52
687 755 3.695606 TGACCGAGCAGTGGAGCC 61.696 66.667 0.00 0.00 34.23 4.70
688 756 2.433318 GTGACCGAGCAGTGGAGC 60.433 66.667 0.00 0.00 0.00 4.70
689 757 2.126307 CGTGACCGAGCAGTGGAG 60.126 66.667 0.00 0.00 35.63 3.86
690 758 3.680786 CCGTGACCGAGCAGTGGA 61.681 66.667 0.00 0.00 35.63 4.02
691 759 3.633094 CTCCGTGACCGAGCAGTGG 62.633 68.421 0.00 0.00 35.63 4.00
692 760 2.126307 CTCCGTGACCGAGCAGTG 60.126 66.667 0.00 0.00 35.63 3.66
693 761 4.057428 GCTCCGTGACCGAGCAGT 62.057 66.667 18.62 0.00 37.27 4.40
697 765 4.180946 CTCCGCTCCGTGACCGAG 62.181 72.222 0.00 0.00 35.63 4.63
707 775 4.567385 CTCTGCTCCGCTCCGCTC 62.567 72.222 0.00 0.00 0.00 5.03
710 778 4.218578 ATGCTCTGCTCCGCTCCG 62.219 66.667 0.00 0.00 0.00 4.63
711 779 2.280052 GATGCTCTGCTCCGCTCC 60.280 66.667 0.00 0.00 0.00 4.70
712 780 2.657944 CGATGCTCTGCTCCGCTC 60.658 66.667 0.00 0.00 0.00 5.03
713 781 4.887987 GCGATGCTCTGCTCCGCT 62.888 66.667 16.56 0.00 42.66 5.52
714 782 4.887987 AGCGATGCTCTGCTCCGC 62.888 66.667 16.27 16.27 44.70 5.54
715 783 0.528466 TAAAGCGATGCTCTGCTCCG 60.528 55.000 0.00 0.00 41.46 4.63
716 784 1.216122 CTAAAGCGATGCTCTGCTCC 58.784 55.000 0.00 0.00 41.46 4.70
717 785 0.581053 GCTAAAGCGATGCTCTGCTC 59.419 55.000 0.00 0.00 41.46 4.26
718 786 2.687842 GCTAAAGCGATGCTCTGCT 58.312 52.632 0.00 0.00 44.97 4.24
720 788 2.073213 AGCAGCTAAAGCGATGCTCTG 61.073 52.381 11.67 0.00 45.55 3.35
721 789 0.177604 AGCAGCTAAAGCGATGCTCT 59.822 50.000 11.67 0.00 45.55 4.09
722 790 2.687842 AGCAGCTAAAGCGATGCTC 58.312 52.632 11.67 0.00 45.55 4.26
723 791 4.950479 AGCAGCTAAAGCGATGCT 57.050 50.000 11.67 11.67 44.40 3.79
729 797 4.876107 TGTAACTTATGGAGCAGCTAAAGC 59.124 41.667 0.00 0.00 42.49 3.51
730 798 6.595716 AGTTGTAACTTATGGAGCAGCTAAAG 59.404 38.462 0.00 0.00 35.21 1.85
731 799 6.472887 AGTTGTAACTTATGGAGCAGCTAAA 58.527 36.000 0.00 0.00 35.21 1.85
732 800 6.049955 AGTTGTAACTTATGGAGCAGCTAA 57.950 37.500 0.00 0.00 35.21 3.09
733 801 5.677319 AGTTGTAACTTATGGAGCAGCTA 57.323 39.130 0.00 0.00 35.21 3.32
734 802 4.559862 AGTTGTAACTTATGGAGCAGCT 57.440 40.909 0.00 0.00 35.21 4.24
735 803 5.420409 ACTAGTTGTAACTTATGGAGCAGC 58.580 41.667 2.20 0.00 40.37 5.25
736 804 6.183360 GCAACTAGTTGTAACTTATGGAGCAG 60.183 42.308 30.90 5.54 42.31 4.24
737 805 5.642063 GCAACTAGTTGTAACTTATGGAGCA 59.358 40.000 30.90 0.00 42.31 4.26
738 806 5.064834 GGCAACTAGTTGTAACTTATGGAGC 59.935 44.000 30.90 15.22 42.31 4.70
739 807 5.291128 CGGCAACTAGTTGTAACTTATGGAG 59.709 44.000 30.90 6.88 42.31 3.86
740 808 5.172934 CGGCAACTAGTTGTAACTTATGGA 58.827 41.667 30.90 0.00 42.31 3.41
741 809 4.201783 GCGGCAACTAGTTGTAACTTATGG 60.202 45.833 30.90 13.92 42.31 2.74
742 810 4.630069 AGCGGCAACTAGTTGTAACTTATG 59.370 41.667 30.90 15.59 42.31 1.90
743 811 4.828829 AGCGGCAACTAGTTGTAACTTAT 58.171 39.130 30.90 12.44 42.31 1.73
744 812 4.240096 GAGCGGCAACTAGTTGTAACTTA 58.760 43.478 30.90 0.00 42.31 2.24
745 813 3.064931 GAGCGGCAACTAGTTGTAACTT 58.935 45.455 30.90 16.41 42.31 2.66
746 814 2.612221 GGAGCGGCAACTAGTTGTAACT 60.612 50.000 30.90 24.77 42.31 2.24
747 815 1.730612 GGAGCGGCAACTAGTTGTAAC 59.269 52.381 30.90 21.34 42.31 2.50
748 816 1.670674 CGGAGCGGCAACTAGTTGTAA 60.671 52.381 30.90 0.00 42.31 2.41
749 817 0.108992 CGGAGCGGCAACTAGTTGTA 60.109 55.000 30.90 0.00 42.31 2.41
750 818 1.374252 CGGAGCGGCAACTAGTTGT 60.374 57.895 30.90 15.48 42.31 3.32
751 819 3.474806 CGGAGCGGCAACTAGTTG 58.525 61.111 27.85 27.85 43.14 3.16
778 846 1.135333 CTAAGAGCCTGTTCGGACTCC 59.865 57.143 0.00 0.00 36.92 3.85
779 847 1.135333 CCTAAGAGCCTGTTCGGACTC 59.865 57.143 0.00 0.00 36.67 3.36
780 848 1.187087 CCTAAGAGCCTGTTCGGACT 58.813 55.000 0.00 0.00 33.16 3.85
781 849 0.460459 GCCTAAGAGCCTGTTCGGAC 60.460 60.000 0.00 0.00 33.16 4.79
782 850 1.898154 GCCTAAGAGCCTGTTCGGA 59.102 57.895 0.00 0.00 33.16 4.55
783 851 4.522971 GCCTAAGAGCCTGTTCGG 57.477 61.111 0.00 0.00 0.00 4.30
791 859 1.153349 CCGAACAGGGCCTAAGAGC 60.153 63.158 5.28 0.00 35.97 4.09
792 860 0.613777 AACCGAACAGGGCCTAAGAG 59.386 55.000 5.28 0.00 46.96 2.85
793 861 1.941377 TAACCGAACAGGGCCTAAGA 58.059 50.000 5.28 0.00 46.96 2.10
794 862 2.484947 GGATAACCGAACAGGGCCTAAG 60.485 54.545 5.28 0.00 46.96 2.18
795 863 1.487558 GGATAACCGAACAGGGCCTAA 59.512 52.381 5.28 0.00 46.96 2.69
796 864 1.125633 GGATAACCGAACAGGGCCTA 58.874 55.000 5.28 0.00 46.96 3.93
797 865 0.912487 TGGATAACCGAACAGGGCCT 60.912 55.000 0.00 0.00 46.96 5.19
798 866 0.746923 GTGGATAACCGAACAGGGCC 60.747 60.000 0.00 0.00 46.96 5.80
799 867 0.746923 GGTGGATAACCGAACAGGGC 60.747 60.000 0.00 0.00 46.96 5.19
800 868 3.471354 GGTGGATAACCGAACAGGG 57.529 57.895 0.00 0.00 46.96 4.45
808 876 2.509422 GGGAGCCGGTGGATAACC 59.491 66.667 1.90 0.00 46.60 2.85
809 877 1.917336 TTGGGGAGCCGGTGGATAAC 61.917 60.000 1.90 0.00 0.00 1.89
810 878 1.208844 TTTGGGGAGCCGGTGGATAA 61.209 55.000 1.90 0.00 0.00 1.75
811 879 1.208844 TTTTGGGGAGCCGGTGGATA 61.209 55.000 1.90 0.00 0.00 2.59
812 880 1.874299 ATTTTGGGGAGCCGGTGGAT 61.874 55.000 1.90 0.00 0.00 3.41
813 881 2.087857 AATTTTGGGGAGCCGGTGGA 62.088 55.000 1.90 0.00 0.00 4.02
814 882 1.191489 AAATTTTGGGGAGCCGGTGG 61.191 55.000 1.90 0.00 0.00 4.61
815 883 0.246360 GAAATTTTGGGGAGCCGGTG 59.754 55.000 1.90 0.00 0.00 4.94
816 884 0.178947 TGAAATTTTGGGGAGCCGGT 60.179 50.000 1.90 0.00 0.00 5.28
817 885 0.532115 CTGAAATTTTGGGGAGCCGG 59.468 55.000 0.00 0.00 0.00 6.13
818 886 0.532115 CCTGAAATTTTGGGGAGCCG 59.468 55.000 0.00 0.00 0.00 5.52
819 887 0.904649 CCCTGAAATTTTGGGGAGCC 59.095 55.000 18.89 0.00 41.25 4.70
820 888 1.937191 TCCCTGAAATTTTGGGGAGC 58.063 50.000 21.04 0.00 42.43 4.70
823 891 2.169144 GCAGATCCCTGAAATTTTGGGG 59.831 50.000 22.27 20.21 43.02 4.96
824 892 2.159198 CGCAGATCCCTGAAATTTTGGG 60.159 50.000 18.74 18.74 43.02 4.12
825 893 2.159198 CCGCAGATCCCTGAAATTTTGG 60.159 50.000 0.00 0.00 43.02 3.28
826 894 2.754552 TCCGCAGATCCCTGAAATTTTG 59.245 45.455 0.00 0.00 43.02 2.44
827 895 3.019564 CTCCGCAGATCCCTGAAATTTT 58.980 45.455 0.00 0.00 43.02 1.82
828 896 2.648059 CTCCGCAGATCCCTGAAATTT 58.352 47.619 0.00 0.00 43.02 1.82
829 897 1.748591 GCTCCGCAGATCCCTGAAATT 60.749 52.381 0.00 0.00 43.02 1.82
830 898 0.179034 GCTCCGCAGATCCCTGAAAT 60.179 55.000 0.00 0.00 43.02 2.17
831 899 1.221840 GCTCCGCAGATCCCTGAAA 59.778 57.895 0.00 0.00 43.02 2.69
832 900 1.989508 TGCTCCGCAGATCCCTGAA 60.990 57.895 0.00 0.00 43.02 3.02
833 901 2.364186 TGCTCCGCAGATCCCTGA 60.364 61.111 0.00 0.00 43.02 3.86
834 902 2.202987 GTGCTCCGCAGATCCCTG 60.203 66.667 0.00 0.00 40.08 4.45
835 903 2.589610 TAGGTGCTCCGCAGATCCCT 62.590 60.000 0.00 2.07 40.08 4.20
836 904 2.093537 CTAGGTGCTCCGCAGATCCC 62.094 65.000 0.00 0.00 40.08 3.85
837 905 1.365633 CTAGGTGCTCCGCAGATCC 59.634 63.158 0.00 0.00 40.08 3.36
838 906 0.461961 AACTAGGTGCTCCGCAGATC 59.538 55.000 14.13 0.00 40.08 2.75
839 907 0.905357 AAACTAGGTGCTCCGCAGAT 59.095 50.000 14.13 2.42 40.08 2.90
840 908 0.037326 CAAACTAGGTGCTCCGCAGA 60.037 55.000 14.13 0.00 40.08 4.26
841 909 1.639298 GCAAACTAGGTGCTCCGCAG 61.639 60.000 12.16 3.72 40.08 5.18
842 910 1.671054 GCAAACTAGGTGCTCCGCA 60.671 57.895 12.16 0.00 39.00 5.69
843 911 3.178539 GCAAACTAGGTGCTCCGC 58.821 61.111 12.16 0.00 39.00 5.54
849 917 2.460330 CGGAGCAGCAAACTAGGTG 58.540 57.895 0.00 0.00 39.87 4.00
868 936 4.651503 TCTCTCCACTCCAGGCTAAATTAG 59.348 45.833 0.00 0.00 0.00 1.73
869 937 4.406003 GTCTCTCCACTCCAGGCTAAATTA 59.594 45.833 0.00 0.00 0.00 1.40
870 938 3.198853 GTCTCTCCACTCCAGGCTAAATT 59.801 47.826 0.00 0.00 0.00 1.82
871 939 2.769095 GTCTCTCCACTCCAGGCTAAAT 59.231 50.000 0.00 0.00 0.00 1.40
872 940 2.180276 GTCTCTCCACTCCAGGCTAAA 58.820 52.381 0.00 0.00 0.00 1.85
873 941 1.359474 AGTCTCTCCACTCCAGGCTAA 59.641 52.381 0.00 0.00 0.00 3.09
874 942 1.003646 AGTCTCTCCACTCCAGGCTA 58.996 55.000 0.00 0.00 0.00 3.93
875 943 0.324275 GAGTCTCTCCACTCCAGGCT 60.324 60.000 0.00 0.00 37.43 4.58
876 944 2.198183 GAGTCTCTCCACTCCAGGC 58.802 63.158 0.00 0.00 37.43 4.85
886 954 2.687935 CTGAGTTAGCCTGGAGTCTCTC 59.312 54.545 0.00 0.00 0.00 3.20
887 955 2.733956 CTGAGTTAGCCTGGAGTCTCT 58.266 52.381 0.00 0.00 0.00 3.10
921 989 3.062466 CCAGACTCCACTCGCGGA 61.062 66.667 6.13 0.00 0.00 5.54
922 990 3.057547 CTCCAGACTCCACTCGCGG 62.058 68.421 6.13 0.00 0.00 6.46
923 991 2.336478 ACTCCAGACTCCACTCGCG 61.336 63.158 0.00 0.00 0.00 5.87
924 992 1.214062 CACTCCAGACTCCACTCGC 59.786 63.158 0.00 0.00 0.00 5.03
925 993 0.609406 TCCACTCCAGACTCCACTCG 60.609 60.000 0.00 0.00 0.00 4.18
926 994 1.181786 CTCCACTCCAGACTCCACTC 58.818 60.000 0.00 0.00 0.00 3.51
927 995 0.780637 TCTCCACTCCAGACTCCACT 59.219 55.000 0.00 0.00 0.00 4.00
928 996 1.181786 CTCTCCACTCCAGACTCCAC 58.818 60.000 0.00 0.00 0.00 4.02
929 997 1.076438 TCTCTCCACTCCAGACTCCA 58.924 55.000 0.00 0.00 0.00 3.86
930 998 1.005450 AGTCTCTCCACTCCAGACTCC 59.995 57.143 0.00 0.00 42.72 3.85
931 999 2.507407 AGTCTCTCCACTCCAGACTC 57.493 55.000 0.00 0.00 42.72 3.36
942 1010 0.812549 GGAGTGTTCGGAGTCTCTCC 59.187 60.000 13.41 13.41 46.44 3.71
943 1011 0.812549 GGGAGTGTTCGGAGTCTCTC 59.187 60.000 0.00 6.18 0.00 3.20
944 1012 0.406361 AGGGAGTGTTCGGAGTCTCT 59.594 55.000 0.00 0.00 0.00 3.10
945 1013 1.258676 AAGGGAGTGTTCGGAGTCTC 58.741 55.000 0.00 0.00 0.00 3.36
946 1014 2.225066 ACTAAGGGAGTGTTCGGAGTCT 60.225 50.000 0.00 0.00 36.87 3.24
947 1015 2.169330 ACTAAGGGAGTGTTCGGAGTC 58.831 52.381 0.00 0.00 36.87 3.36
948 1016 2.305858 ACTAAGGGAGTGTTCGGAGT 57.694 50.000 0.00 0.00 36.87 3.85
949 1017 2.561419 TGAACTAAGGGAGTGTTCGGAG 59.439 50.000 0.00 0.00 41.88 4.63
950 1018 2.298163 GTGAACTAAGGGAGTGTTCGGA 59.702 50.000 0.00 0.00 41.88 4.55
951 1019 2.036733 TGTGAACTAAGGGAGTGTTCGG 59.963 50.000 0.00 0.00 41.88 4.30
952 1020 3.005472 TCTGTGAACTAAGGGAGTGTTCG 59.995 47.826 0.00 0.00 41.88 3.95
953 1021 4.308265 GTCTGTGAACTAAGGGAGTGTTC 58.692 47.826 0.00 0.00 38.87 3.18
954 1022 3.243771 CGTCTGTGAACTAAGGGAGTGTT 60.244 47.826 0.00 0.00 38.87 3.32
955 1023 2.296471 CGTCTGTGAACTAAGGGAGTGT 59.704 50.000 0.00 0.00 38.87 3.55
956 1024 2.296471 ACGTCTGTGAACTAAGGGAGTG 59.704 50.000 0.00 0.00 38.87 3.51
957 1025 2.595238 ACGTCTGTGAACTAAGGGAGT 58.405 47.619 0.00 0.00 41.56 3.85
958 1026 3.243771 ACAACGTCTGTGAACTAAGGGAG 60.244 47.826 0.00 0.00 36.69 4.30
959 1027 2.696707 ACAACGTCTGTGAACTAAGGGA 59.303 45.455 0.00 0.00 36.69 4.20
960 1028 3.107642 ACAACGTCTGTGAACTAAGGG 57.892 47.619 0.00 0.00 36.69 3.95
961 1029 3.869246 ACAACAACGTCTGTGAACTAAGG 59.131 43.478 4.51 0.00 38.67 2.69
1017 1085 2.438021 TGAAGCAAGAGTTACTGTGGGT 59.562 45.455 0.00 0.00 0.00 4.51
1020 1088 4.371786 TCTGTGAAGCAAGAGTTACTGTG 58.628 43.478 0.00 0.00 0.00 3.66
1024 1092 3.126000 GCCATCTGTGAAGCAAGAGTTAC 59.874 47.826 0.00 0.00 0.00 2.50
1028 1096 1.738350 CAGCCATCTGTGAAGCAAGAG 59.262 52.381 0.00 0.00 35.61 2.85
1048 1116 0.098728 CCGATGGTCACAATTTCGCC 59.901 55.000 0.00 0.00 0.00 5.54
1049 1117 0.523335 GCCGATGGTCACAATTTCGC 60.523 55.000 0.00 0.00 0.00 4.70
1056 1124 1.375908 GAGCTTGCCGATGGTCACA 60.376 57.895 0.00 0.00 0.00 3.58
1189 1284 3.058450 CAGTTGGATCGAGCTCATCATC 58.942 50.000 15.40 11.17 0.00 2.92
1190 1285 2.433604 ACAGTTGGATCGAGCTCATCAT 59.566 45.455 15.40 1.72 0.00 2.45
1191 1286 1.827344 ACAGTTGGATCGAGCTCATCA 59.173 47.619 15.40 2.92 0.00 3.07
1276 1374 0.874390 TCAGCTCGAAATTGGTGCAC 59.126 50.000 8.80 8.80 0.00 4.57
1416 1514 9.636879 CAATCATCAATCTTATATCTCTCACGT 57.363 33.333 0.00 0.00 0.00 4.49
1425 1523 7.122353 GCAGGCTTCCAATCATCAATCTTATAT 59.878 37.037 0.00 0.00 0.00 0.86
1459 1557 1.300971 CGAGGGTCAACAGGCACATG 61.301 60.000 0.00 0.00 0.00 3.21
1460 1558 1.003355 CGAGGGTCAACAGGCACAT 60.003 57.895 0.00 0.00 0.00 3.21
1593 1691 5.312443 AGTTTTACCAAGACCACCTAATCCT 59.688 40.000 0.00 0.00 0.00 3.24
1599 1697 4.411212 AGTGTAGTTTTACCAAGACCACCT 59.589 41.667 0.00 0.00 0.00 4.00
1635 1733 5.980698 ATTGCGAGTCAATCTTGTCATAG 57.019 39.130 0.00 0.00 41.34 2.23
1826 1941 2.691927 TGCAAGTGACTGCTGATAGTG 58.308 47.619 0.00 0.00 43.07 2.74
1923 2049 3.676291 AAACACAAAGCACCAAACAGT 57.324 38.095 0.00 0.00 0.00 3.55
1924 2050 5.347342 TCATAAACACAAAGCACCAAACAG 58.653 37.500 0.00 0.00 0.00 3.16
2020 2181 5.111293 CAATTATGGCACTGGATGGAAAAC 58.889 41.667 0.00 0.00 0.00 2.43
2035 2197 8.918202 TGTTTCTATTACCCTAGCAATTATGG 57.082 34.615 0.00 0.00 0.00 2.74
2084 4708 5.758784 CCCGTCTTTTAGAAACACTCTTCTT 59.241 40.000 0.00 0.00 36.95 2.52
2093 4717 6.490566 TTCAATAGCCCGTCTTTTAGAAAC 57.509 37.500 0.00 0.00 0.00 2.78
2099 4729 4.589908 AGACATTCAATAGCCCGTCTTTT 58.410 39.130 0.00 0.00 29.68 2.27
2106 4743 5.931441 GTCACATAGACATTCAATAGCCC 57.069 43.478 0.00 0.00 46.77 5.19
2130 4774 2.159014 CGCCCTACCAGTTTAGCACATA 60.159 50.000 0.00 0.00 0.00 2.29
2146 4792 3.603158 AAAACTTTGTCAAAACGCCCT 57.397 38.095 0.00 0.00 0.00 5.19
2149 4795 9.403869 CTAAATGTAAAAACTTTGTCAAAACGC 57.596 29.630 0.00 0.00 0.00 4.84
2150 4796 9.894439 CCTAAATGTAAAAACTTTGTCAAAACG 57.106 29.630 0.00 0.00 0.00 3.60
2177 4825 6.796867 AATGGTATGGAGGGGTATGTTTAT 57.203 37.500 0.00 0.00 0.00 1.40
2235 4891 8.843885 CAGATATGTGAACTGGACATCATAAT 57.156 34.615 0.00 0.00 35.62 1.28
2246 4943 8.498054 AAAATCAGTACCAGATATGTGAACTG 57.502 34.615 20.22 20.22 34.79 3.16
2248 4945 8.946085 TGAAAAATCAGTACCAGATATGTGAAC 58.054 33.333 0.46 0.00 0.00 3.18
2270 4967 4.746535 AATCTTGCATGCATGGATGAAA 57.253 36.364 30.96 23.78 36.28 2.69
2273 4970 3.555547 CACAAATCTTGCATGCATGGATG 59.444 43.478 27.34 24.96 0.00 3.51
2274 4971 3.449377 TCACAAATCTTGCATGCATGGAT 59.551 39.130 27.34 24.98 0.00 3.41
2279 4976 4.260139 ACATTCACAAATCTTGCATGCA 57.740 36.364 18.46 18.46 0.00 3.96
2312 5016 2.846206 TCCATGTCTATCACAAAGGCCT 59.154 45.455 0.00 0.00 38.97 5.19
2423 5378 8.511465 ACGAAATCATCAAAATCTTGACAAAG 57.489 30.769 0.00 0.00 44.28 2.77
2628 5587 2.941453 GTCATTCTGACAGGCTACGA 57.059 50.000 1.81 0.00 46.22 3.43
2659 5618 5.784177 TCACTGAGAGGTTTCAATCTGTAC 58.216 41.667 0.00 0.00 0.00 2.90
3148 6120 0.321122 CTCTGCAACACACCTCCTCC 60.321 60.000 0.00 0.00 0.00 4.30
3187 6162 1.063174 GCGCACTTGCTTAGGATCAAG 59.937 52.381 0.30 0.00 43.79 3.02
3289 6280 2.665165 AGTTGCTCCATCACCAACAAA 58.335 42.857 5.66 0.00 40.85 2.83
3304 6307 6.538742 TGTGATAGGCTAACAGAAATAGTTGC 59.461 38.462 4.56 0.00 0.00 4.17
3313 6320 4.461431 TCGAACTTGTGATAGGCTAACAGA 59.539 41.667 4.56 0.75 0.00 3.41
3343 6350 0.321653 ATGGAGTTTCCCGACAGTGC 60.322 55.000 0.00 0.00 35.03 4.40
3350 6357 1.452108 GGAGGCATGGAGTTTCCCG 60.452 63.158 0.00 0.00 35.03 5.14
3428 6444 0.914417 GAGGTCAAGGGTCCCCATGA 60.914 60.000 3.51 6.19 40.91 3.07
3434 6450 2.663196 CGGTGAGGTCAAGGGTCC 59.337 66.667 0.00 0.00 0.00 4.46
3457 6473 1.614903 CCTCAGCTGAAACAATTGGCA 59.385 47.619 18.85 4.21 0.00 4.92
3499 6521 0.737715 GCTGGGAGCTGTACAAGACG 60.738 60.000 0.00 0.00 38.45 4.18
3516 6538 7.175797 AGTAAATAAGCCCTTTAAGTTCAGCT 58.824 34.615 0.00 0.00 0.00 4.24
3526 6548 4.941873 CGTCTCCAAGTAAATAAGCCCTTT 59.058 41.667 0.00 0.00 0.00 3.11
3563 6585 2.421107 GGGATGCTCTTGAGATCTGCAA 60.421 50.000 0.00 3.72 37.20 4.08
3625 6650 2.883888 GCAGCCCTTCTTCCATACCAAA 60.884 50.000 0.00 0.00 0.00 3.28
3696 6738 1.199615 TGCTCGGATTGGTCACCATA 58.800 50.000 0.00 0.00 31.53 2.74
3697 6739 0.548031 ATGCTCGGATTGGTCACCAT 59.452 50.000 0.00 0.00 31.53 3.55
3710 6770 1.538512 CCATAATGGCCTTCATGCTCG 59.461 52.381 3.32 0.00 35.99 5.03
3722 6797 1.597742 CTCGCCAAGACCCATAATGG 58.402 55.000 0.00 0.00 37.25 3.16
3744 6819 3.393426 ACCAGTTCCCTAAGATCGGTA 57.607 47.619 0.00 0.00 0.00 4.02
3783 6861 3.225104 AGCATCAAGTTTTGGCTTCTCA 58.775 40.909 0.00 0.00 0.00 3.27
3812 6890 2.664402 ACAAAGCTGTCCAATGGAGT 57.336 45.000 0.27 0.00 29.39 3.85
3823 6901 7.064609 TCGAAGATATTTGAGGTTACAAAGCTG 59.935 37.037 0.00 0.00 41.87 4.24
3923 7016 1.935933 ATTCAATACAGACCCGCGAC 58.064 50.000 8.23 0.00 0.00 5.19
4076 7182 3.369471 CCTTTCTTTAGGGAGATGCGACA 60.369 47.826 0.00 0.00 0.00 4.35
4149 7255 6.016777 GGTATGCCATAATGTCTTCCTTTGAG 60.017 42.308 0.00 0.00 34.09 3.02
4152 7258 5.829924 CAGGTATGCCATAATGTCTTCCTTT 59.170 40.000 1.54 0.00 37.19 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.