Multiple sequence alignment - TraesCS1A01G436800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G436800 chr1A 100.000 2749 0 0 1 2749 586899897 586897149 0.000000e+00 5077
1 TraesCS1A01G436800 chr1A 85.554 983 103 18 1798 2749 104604462 104603488 0.000000e+00 992
2 TraesCS1A01G436800 chr7A 95.383 953 31 1 1797 2749 673600760 673601699 0.000000e+00 1504
3 TraesCS1A01G436800 chr7A 95.183 955 33 1 1795 2749 358797964 358798905 0.000000e+00 1496
4 TraesCS1A01G436800 chr7A 94.229 953 39 5 1798 2749 62424050 62423113 0.000000e+00 1441
5 TraesCS1A01G436800 chr7A 89.441 644 62 5 1 639 547527853 547528495 0.000000e+00 808
6 TraesCS1A01G436800 chr6A 93.914 953 44 2 1797 2749 99316795 99315857 0.000000e+00 1426
7 TraesCS1A01G436800 chr6A 93.498 646 36 4 1 643 450092027 450092669 0.000000e+00 955
8 TraesCS1A01G436800 chr6A 92.056 214 17 0 785 998 558457495 558457708 4.450000e-78 302
9 TraesCS1A01G436800 chr6A 92.056 214 17 0 785 998 558460815 558461028 4.450000e-78 302
10 TraesCS1A01G436800 chr3A 93.730 957 48 7 1798 2749 11802491 11801542 0.000000e+00 1424
11 TraesCS1A01G436800 chr3A 89.147 129 10 3 1798 1924 545347825 545347951 1.020000e-34 158
12 TraesCS1A01G436800 chr3A 89.147 129 10 3 1798 1924 685064339 685064213 1.020000e-34 158
13 TraesCS1A01G436800 chr3A 88.148 135 12 4 1793 1924 691149416 691149549 1.020000e-34 158
14 TraesCS1A01G436800 chr1B 91.414 955 77 3 1798 2749 28598681 28599633 0.000000e+00 1304
15 TraesCS1A01G436800 chr6B 90.644 962 75 9 1798 2749 9389873 9390829 0.000000e+00 1264
16 TraesCS1A01G436800 chr6D 93.077 650 42 3 1 648 60229408 60230056 0.000000e+00 948
17 TraesCS1A01G436800 chr6D 89.150 765 64 15 1995 2749 15636823 15636068 0.000000e+00 935
18 TraesCS1A01G436800 chr6D 88.515 653 59 10 1 648 310403819 310404460 0.000000e+00 795
19 TraesCS1A01G436800 chr4B 92.037 653 46 5 1 648 105005662 105005011 0.000000e+00 913
20 TraesCS1A01G436800 chr4D 83.929 952 128 16 1813 2749 163718219 163719160 0.000000e+00 887
21 TraesCS1A01G436800 chr1D 83.784 962 129 20 1798 2749 13179994 13180938 0.000000e+00 887
22 TraesCS1A01G436800 chr1D 82.768 708 95 13 1071 1772 86205014 86205700 8.420000e-170 606
23 TraesCS1A01G436800 chr1D 92.891 211 15 0 786 996 18864767 18864557 9.560000e-80 307
24 TraesCS1A01G436800 chr1D 92.857 210 15 0 786 995 482993879 482994088 3.440000e-79 305
25 TraesCS1A01G436800 chr2D 90.534 655 52 9 1 648 11036808 11036157 0.000000e+00 857
26 TraesCS1A01G436800 chr2A 89.144 654 65 4 1 648 779843064 779843717 0.000000e+00 809
27 TraesCS1A01G436800 chr7B 88.957 652 60 10 1 642 447982539 447983188 0.000000e+00 795
28 TraesCS1A01G436800 chr7B 87.671 657 65 13 1 648 567586424 567587073 0.000000e+00 750
29 TraesCS1A01G436800 chr4A 80.849 966 156 20 1798 2749 114144008 114144958 0.000000e+00 732
30 TraesCS1A01G436800 chrUn 92.488 213 16 0 785 997 90109721 90109933 3.440000e-79 305
31 TraesCS1A01G436800 chrUn 91.589 214 18 0 785 998 138272144 138271931 2.070000e-76 296
32 TraesCS1A01G436800 chr3D 92.488 213 16 0 784 996 484803904 484804116 3.440000e-79 305
33 TraesCS1A01G436800 chr3D 92.093 215 17 0 782 996 70280431 70280645 1.240000e-78 303
34 TraesCS1A01G436800 chr5B 92.019 213 17 0 786 998 666792297 666792509 1.600000e-77 300


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G436800 chr1A 586897149 586899897 2748 True 5077 5077 100.000 1 2749 1 chr1A.!!$R2 2748
1 TraesCS1A01G436800 chr1A 104603488 104604462 974 True 992 992 85.554 1798 2749 1 chr1A.!!$R1 951
2 TraesCS1A01G436800 chr7A 673600760 673601699 939 False 1504 1504 95.383 1797 2749 1 chr7A.!!$F3 952
3 TraesCS1A01G436800 chr7A 358797964 358798905 941 False 1496 1496 95.183 1795 2749 1 chr7A.!!$F1 954
4 TraesCS1A01G436800 chr7A 62423113 62424050 937 True 1441 1441 94.229 1798 2749 1 chr7A.!!$R1 951
5 TraesCS1A01G436800 chr7A 547527853 547528495 642 False 808 808 89.441 1 639 1 chr7A.!!$F2 638
6 TraesCS1A01G436800 chr6A 99315857 99316795 938 True 1426 1426 93.914 1797 2749 1 chr6A.!!$R1 952
7 TraesCS1A01G436800 chr6A 450092027 450092669 642 False 955 955 93.498 1 643 1 chr6A.!!$F1 642
8 TraesCS1A01G436800 chr6A 558457495 558461028 3533 False 302 302 92.056 785 998 2 chr6A.!!$F2 213
9 TraesCS1A01G436800 chr3A 11801542 11802491 949 True 1424 1424 93.730 1798 2749 1 chr3A.!!$R1 951
10 TraesCS1A01G436800 chr1B 28598681 28599633 952 False 1304 1304 91.414 1798 2749 1 chr1B.!!$F1 951
11 TraesCS1A01G436800 chr6B 9389873 9390829 956 False 1264 1264 90.644 1798 2749 1 chr6B.!!$F1 951
12 TraesCS1A01G436800 chr6D 60229408 60230056 648 False 948 948 93.077 1 648 1 chr6D.!!$F1 647
13 TraesCS1A01G436800 chr6D 15636068 15636823 755 True 935 935 89.150 1995 2749 1 chr6D.!!$R1 754
14 TraesCS1A01G436800 chr6D 310403819 310404460 641 False 795 795 88.515 1 648 1 chr6D.!!$F2 647
15 TraesCS1A01G436800 chr4B 105005011 105005662 651 True 913 913 92.037 1 648 1 chr4B.!!$R1 647
16 TraesCS1A01G436800 chr4D 163718219 163719160 941 False 887 887 83.929 1813 2749 1 chr4D.!!$F1 936
17 TraesCS1A01G436800 chr1D 13179994 13180938 944 False 887 887 83.784 1798 2749 1 chr1D.!!$F1 951
18 TraesCS1A01G436800 chr1D 86205014 86205700 686 False 606 606 82.768 1071 1772 1 chr1D.!!$F2 701
19 TraesCS1A01G436800 chr2D 11036157 11036808 651 True 857 857 90.534 1 648 1 chr2D.!!$R1 647
20 TraesCS1A01G436800 chr2A 779843064 779843717 653 False 809 809 89.144 1 648 1 chr2A.!!$F1 647
21 TraesCS1A01G436800 chr7B 447982539 447983188 649 False 795 795 88.957 1 642 1 chr7B.!!$F1 641
22 TraesCS1A01G436800 chr7B 567586424 567587073 649 False 750 750 87.671 1 648 1 chr7B.!!$F2 647
23 TraesCS1A01G436800 chr4A 114144008 114144958 950 False 732 732 80.849 1798 2749 1 chr4A.!!$F1 951

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
666 683 0.037975 GTGTTTCGCCCGAGTCCTAA 60.038 55.0 0.0 0.0 0.00 2.69 F
1018 1035 0.104487 TGAACGCACCAACGGAACTA 59.896 50.0 0.0 0.0 37.37 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1481 1501 0.250295 TCTGCTTTGTAAGTGCCGCT 60.250 50.000 0.00 0.0 0.0 5.52 R
2176 2891 1.396996 CCGCGGATTAGTTTCAAGTGG 59.603 52.381 24.07 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 125 1.542915 CGAGAACTAGGTTTCACCCGA 59.457 52.381 0.00 0.00 39.75 5.14
310 312 1.522092 GTCAGATGGTCCATCGCCA 59.478 57.895 23.38 10.55 44.67 5.69
457 471 3.157949 TCGTGCCTCCACACACCA 61.158 61.111 0.00 0.00 42.17 4.17
662 679 2.741211 GGGTGTTTCGCCCGAGTC 60.741 66.667 2.53 0.00 44.71 3.36
663 680 2.741211 GGTGTTTCGCCCGAGTCC 60.741 66.667 0.00 0.00 0.00 3.85
664 681 2.342648 GTGTTTCGCCCGAGTCCT 59.657 61.111 0.00 0.00 0.00 3.85
665 682 1.588082 GTGTTTCGCCCGAGTCCTA 59.412 57.895 0.00 0.00 0.00 2.94
666 683 0.037975 GTGTTTCGCCCGAGTCCTAA 60.038 55.000 0.00 0.00 0.00 2.69
667 684 0.899720 TGTTTCGCCCGAGTCCTAAT 59.100 50.000 0.00 0.00 0.00 1.73
668 685 1.276989 TGTTTCGCCCGAGTCCTAATT 59.723 47.619 0.00 0.00 0.00 1.40
669 686 2.289819 TGTTTCGCCCGAGTCCTAATTT 60.290 45.455 0.00 0.00 0.00 1.82
670 687 2.304751 TTCGCCCGAGTCCTAATTTC 57.695 50.000 0.00 0.00 0.00 2.17
671 688 1.187974 TCGCCCGAGTCCTAATTTCA 58.812 50.000 0.00 0.00 0.00 2.69
672 689 1.760613 TCGCCCGAGTCCTAATTTCAT 59.239 47.619 0.00 0.00 0.00 2.57
673 690 2.169769 TCGCCCGAGTCCTAATTTCATT 59.830 45.455 0.00 0.00 0.00 2.57
674 691 2.943033 CGCCCGAGTCCTAATTTCATTT 59.057 45.455 0.00 0.00 0.00 2.32
675 692 3.377172 CGCCCGAGTCCTAATTTCATTTT 59.623 43.478 0.00 0.00 0.00 1.82
676 693 4.672409 GCCCGAGTCCTAATTTCATTTTG 58.328 43.478 0.00 0.00 0.00 2.44
677 694 4.672409 CCCGAGTCCTAATTTCATTTTGC 58.328 43.478 0.00 0.00 0.00 3.68
678 695 4.440112 CCCGAGTCCTAATTTCATTTTGCC 60.440 45.833 0.00 0.00 0.00 4.52
679 696 4.399303 CCGAGTCCTAATTTCATTTTGCCT 59.601 41.667 0.00 0.00 0.00 4.75
680 697 5.105756 CCGAGTCCTAATTTCATTTTGCCTT 60.106 40.000 0.00 0.00 0.00 4.35
681 698 6.389906 CGAGTCCTAATTTCATTTTGCCTTT 58.610 36.000 0.00 0.00 0.00 3.11
682 699 6.868339 CGAGTCCTAATTTCATTTTGCCTTTT 59.132 34.615 0.00 0.00 0.00 2.27
683 700 7.062255 CGAGTCCTAATTTCATTTTGCCTTTTC 59.938 37.037 0.00 0.00 0.00 2.29
684 701 6.868339 AGTCCTAATTTCATTTTGCCTTTTCG 59.132 34.615 0.00 0.00 0.00 3.46
685 702 6.866248 GTCCTAATTTCATTTTGCCTTTTCGA 59.134 34.615 0.00 0.00 0.00 3.71
686 703 7.545615 GTCCTAATTTCATTTTGCCTTTTCGAT 59.454 33.333 0.00 0.00 0.00 3.59
687 704 8.093927 TCCTAATTTCATTTTGCCTTTTCGATT 58.906 29.630 0.00 0.00 0.00 3.34
688 705 8.720562 CCTAATTTCATTTTGCCTTTTCGATTT 58.279 29.630 0.00 0.00 0.00 2.17
694 711 9.487790 TTCATTTTGCCTTTTCGATTTTAATCT 57.512 25.926 0.00 0.00 33.24 2.40
695 712 9.139174 TCATTTTGCCTTTTCGATTTTAATCTC 57.861 29.630 0.00 0.00 33.24 2.75
696 713 7.883229 TTTTGCCTTTTCGATTTTAATCTCC 57.117 32.000 0.00 0.00 33.24 3.71
697 714 5.576447 TGCCTTTTCGATTTTAATCTCCC 57.424 39.130 0.00 0.00 33.24 4.30
698 715 5.261216 TGCCTTTTCGATTTTAATCTCCCT 58.739 37.500 0.00 0.00 33.24 4.20
699 716 6.419791 TGCCTTTTCGATTTTAATCTCCCTA 58.580 36.000 0.00 0.00 33.24 3.53
700 717 6.887545 TGCCTTTTCGATTTTAATCTCCCTAA 59.112 34.615 0.00 0.00 33.24 2.69
701 718 7.148137 TGCCTTTTCGATTTTAATCTCCCTAAC 60.148 37.037 0.00 0.00 33.24 2.34
702 719 7.148137 GCCTTTTCGATTTTAATCTCCCTAACA 60.148 37.037 0.00 0.00 33.24 2.41
703 720 8.182227 CCTTTTCGATTTTAATCTCCCTAACAC 58.818 37.037 0.00 0.00 33.24 3.32
704 721 6.897259 TTCGATTTTAATCTCCCTAACACG 57.103 37.500 0.00 0.00 33.24 4.49
705 722 4.807304 TCGATTTTAATCTCCCTAACACGC 59.193 41.667 1.41 0.00 33.24 5.34
706 723 4.809426 CGATTTTAATCTCCCTAACACGCT 59.191 41.667 1.41 0.00 33.24 5.07
707 724 5.050972 CGATTTTAATCTCCCTAACACGCTC 60.051 44.000 1.41 0.00 33.24 5.03
708 725 4.811969 TTTAATCTCCCTAACACGCTCA 57.188 40.909 0.00 0.00 0.00 4.26
709 726 5.353394 TTTAATCTCCCTAACACGCTCAT 57.647 39.130 0.00 0.00 0.00 2.90
710 727 3.460857 AATCTCCCTAACACGCTCATC 57.539 47.619 0.00 0.00 0.00 2.92
711 728 1.847328 TCTCCCTAACACGCTCATCA 58.153 50.000 0.00 0.00 0.00 3.07
712 729 1.751351 TCTCCCTAACACGCTCATCAG 59.249 52.381 0.00 0.00 0.00 2.90
713 730 1.478510 CTCCCTAACACGCTCATCAGT 59.521 52.381 0.00 0.00 0.00 3.41
714 731 1.899814 TCCCTAACACGCTCATCAGTT 59.100 47.619 0.00 0.00 0.00 3.16
715 732 3.093814 TCCCTAACACGCTCATCAGTTA 58.906 45.455 0.00 0.00 0.00 2.24
716 733 3.704566 TCCCTAACACGCTCATCAGTTAT 59.295 43.478 0.00 0.00 0.00 1.89
717 734 3.804325 CCCTAACACGCTCATCAGTTATG 59.196 47.826 0.00 0.00 36.88 1.90
718 735 4.433615 CCTAACACGCTCATCAGTTATGT 58.566 43.478 0.00 0.00 36.89 2.29
719 736 4.504461 CCTAACACGCTCATCAGTTATGTC 59.496 45.833 0.00 0.00 36.89 3.06
720 737 2.893637 ACACGCTCATCAGTTATGTCC 58.106 47.619 0.00 0.00 36.89 4.02
721 738 2.205074 CACGCTCATCAGTTATGTCCC 58.795 52.381 0.00 0.00 36.89 4.46
722 739 1.139058 ACGCTCATCAGTTATGTCCCC 59.861 52.381 0.00 0.00 36.89 4.81
723 740 1.414181 CGCTCATCAGTTATGTCCCCT 59.586 52.381 0.00 0.00 36.89 4.79
724 741 2.158900 CGCTCATCAGTTATGTCCCCTT 60.159 50.000 0.00 0.00 36.89 3.95
725 742 3.471680 GCTCATCAGTTATGTCCCCTTC 58.528 50.000 0.00 0.00 36.89 3.46
726 743 3.722147 CTCATCAGTTATGTCCCCTTCG 58.278 50.000 0.00 0.00 36.89 3.79
727 744 2.158957 TCATCAGTTATGTCCCCTTCGC 60.159 50.000 0.00 0.00 36.89 4.70
728 745 0.539986 TCAGTTATGTCCCCTTCGCC 59.460 55.000 0.00 0.00 0.00 5.54
729 746 0.810031 CAGTTATGTCCCCTTCGCCG 60.810 60.000 0.00 0.00 0.00 6.46
730 747 2.178235 GTTATGTCCCCTTCGCCGC 61.178 63.158 0.00 0.00 0.00 6.53
731 748 3.394635 TTATGTCCCCTTCGCCGCC 62.395 63.158 0.00 0.00 0.00 6.13
743 760 3.964875 GCCGCCGGCCATAACATG 61.965 66.667 23.46 3.38 44.06 3.21
744 761 3.964875 CCGCCGGCCATAACATGC 61.965 66.667 23.46 0.00 0.00 4.06
745 762 2.901840 CGCCGGCCATAACATGCT 60.902 61.111 23.46 0.00 0.00 3.79
746 763 2.896801 CGCCGGCCATAACATGCTC 61.897 63.158 23.46 0.00 0.00 4.26
747 764 2.896801 GCCGGCCATAACATGCTCG 61.897 63.158 18.11 0.00 0.00 5.03
748 765 2.253758 CCGGCCATAACATGCTCGG 61.254 63.158 2.24 0.00 37.73 4.63
749 766 2.896801 CGGCCATAACATGCTCGGC 61.897 63.158 2.24 7.34 42.21 5.54
750 767 2.633657 GCCATAACATGCTCGGCG 59.366 61.111 0.00 0.00 32.14 6.46
751 768 2.896801 GCCATAACATGCTCGGCGG 61.897 63.158 7.21 0.00 32.14 6.13
752 769 1.523711 CCATAACATGCTCGGCGGT 60.524 57.895 7.21 0.00 0.00 5.68
753 770 1.643292 CATAACATGCTCGGCGGTG 59.357 57.895 7.21 3.98 0.00 4.94
754 771 0.809636 CATAACATGCTCGGCGGTGA 60.810 55.000 7.21 0.00 0.00 4.02
755 772 0.106708 ATAACATGCTCGGCGGTGAT 59.893 50.000 7.21 0.00 0.00 3.06
756 773 0.809636 TAACATGCTCGGCGGTGATG 60.810 55.000 7.21 9.11 0.00 3.07
757 774 3.945434 CATGCTCGGCGGTGATGC 61.945 66.667 7.21 4.97 0.00 3.91
758 775 4.166888 ATGCTCGGCGGTGATGCT 62.167 61.111 7.21 0.00 34.52 3.79
782 799 3.067985 TGCCCGAGCATCAACTGA 58.932 55.556 0.00 0.00 46.52 3.41
783 800 1.374568 TGCCCGAGCATCAACTGAA 59.625 52.632 0.00 0.00 46.52 3.02
797 814 0.314302 ACTGAACGGACGAGACTTGG 59.686 55.000 0.00 0.00 0.00 3.61
805 822 2.159819 GACGAGACTTGGCTGCTCCA 62.160 60.000 0.00 0.00 44.85 3.86
807 824 1.372683 GAGACTTGGCTGCTCCACA 59.627 57.895 0.00 0.00 46.55 4.17
808 825 0.952984 GAGACTTGGCTGCTCCACAC 60.953 60.000 0.00 0.00 46.55 3.82
830 847 4.101448 GTGCCCATCCGTGCTCCT 62.101 66.667 0.00 0.00 0.00 3.69
857 874 3.244976 CGTGGCTTGATTTGATTGGAAC 58.755 45.455 0.00 0.00 0.00 3.62
873 890 1.899142 GGAACAAAATAAGGCCTGGCA 59.101 47.619 22.05 0.00 0.00 4.92
892 909 2.556559 GCACCACCCCCTTAAAATCAGA 60.557 50.000 0.00 0.00 0.00 3.27
916 933 7.457535 AGAGGGGAGATGATTAGATTAGAAAGG 59.542 40.741 0.00 0.00 0.00 3.11
917 934 6.503570 AGGGGAGATGATTAGATTAGAAAGGG 59.496 42.308 0.00 0.00 0.00 3.95
920 937 8.440771 GGGAGATGATTAGATTAGAAAGGGAAA 58.559 37.037 0.00 0.00 0.00 3.13
983 1000 2.367377 CATGGGGAGGGAGCAGGA 60.367 66.667 0.00 0.00 0.00 3.86
986 1003 1.575447 ATGGGGAGGGAGCAGGAAAC 61.575 60.000 0.00 0.00 0.00 2.78
998 1015 0.679960 CAGGAAACCCGGATCCCAAC 60.680 60.000 0.73 0.00 36.31 3.77
1000 1017 0.679960 GGAAACCCGGATCCCAACTG 60.680 60.000 0.73 0.00 0.00 3.16
1001 1018 0.326927 GAAACCCGGATCCCAACTGA 59.673 55.000 0.73 0.00 0.00 3.41
1002 1019 0.774908 AAACCCGGATCCCAACTGAA 59.225 50.000 0.73 0.00 0.00 3.02
1004 1021 1.449601 CCCGGATCCCAACTGAACG 60.450 63.158 0.73 0.00 0.00 3.95
1006 1023 1.375396 CGGATCCCAACTGAACGCA 60.375 57.895 6.06 0.00 0.00 5.24
1007 1024 1.635663 CGGATCCCAACTGAACGCAC 61.636 60.000 6.06 0.00 0.00 5.34
1008 1025 1.305930 GGATCCCAACTGAACGCACC 61.306 60.000 0.00 0.00 0.00 5.01
1009 1026 0.605319 GATCCCAACTGAACGCACCA 60.605 55.000 0.00 0.00 0.00 4.17
1010 1027 0.179004 ATCCCAACTGAACGCACCAA 60.179 50.000 0.00 0.00 0.00 3.67
1012 1029 1.010125 CCAACTGAACGCACCAACG 60.010 57.895 0.00 0.00 39.50 4.10
1014 1031 1.153329 AACTGAACGCACCAACGGA 60.153 52.632 0.00 0.00 37.37 4.69
1015 1032 0.745128 AACTGAACGCACCAACGGAA 60.745 50.000 0.00 0.00 37.37 4.30
1016 1033 1.278637 CTGAACGCACCAACGGAAC 59.721 57.895 0.00 0.00 37.37 3.62
1017 1034 1.153329 TGAACGCACCAACGGAACT 60.153 52.632 0.00 0.00 37.37 3.01
1018 1035 0.104487 TGAACGCACCAACGGAACTA 59.896 50.000 0.00 0.00 37.37 2.24
1019 1036 1.219646 GAACGCACCAACGGAACTAA 58.780 50.000 0.00 0.00 37.37 2.24
1020 1037 1.598601 GAACGCACCAACGGAACTAAA 59.401 47.619 0.00 0.00 37.37 1.85
1021 1038 1.886886 ACGCACCAACGGAACTAAAT 58.113 45.000 0.00 0.00 37.37 1.40
1022 1039 1.802365 ACGCACCAACGGAACTAAATC 59.198 47.619 0.00 0.00 37.37 2.17
1023 1040 2.073816 CGCACCAACGGAACTAAATCT 58.926 47.619 0.00 0.00 0.00 2.40
1024 1041 2.159707 CGCACCAACGGAACTAAATCTG 60.160 50.000 0.00 0.00 0.00 2.90
1025 1042 2.161609 GCACCAACGGAACTAAATCTGG 59.838 50.000 0.00 0.00 0.00 3.86
1026 1043 3.670625 CACCAACGGAACTAAATCTGGA 58.329 45.455 0.00 0.00 0.00 3.86
1027 1044 3.435671 CACCAACGGAACTAAATCTGGAC 59.564 47.826 0.00 0.00 0.00 4.02
1028 1045 2.671396 CCAACGGAACTAAATCTGGACG 59.329 50.000 0.00 0.00 0.00 4.79
1029 1046 2.005971 ACGGAACTAAATCTGGACGC 57.994 50.000 0.00 0.00 0.00 5.19
1030 1047 0.921347 CGGAACTAAATCTGGACGCG 59.079 55.000 3.53 3.53 0.00 6.01
1031 1048 1.734707 CGGAACTAAATCTGGACGCGT 60.735 52.381 13.85 13.85 0.00 6.01
1032 1049 1.925185 GGAACTAAATCTGGACGCGTC 59.075 52.381 30.67 30.67 0.00 5.19
1033 1050 1.582502 GAACTAAATCTGGACGCGTCG 59.417 52.381 30.99 19.37 0.00 5.12
1034 1051 0.524862 ACTAAATCTGGACGCGTCGT 59.475 50.000 30.99 18.30 45.10 4.34
1035 1052 1.068055 ACTAAATCTGGACGCGTCGTT 60.068 47.619 30.99 19.73 41.37 3.85
1036 1053 1.582502 CTAAATCTGGACGCGTCGTTC 59.417 52.381 30.99 18.85 41.37 3.95
1037 1054 1.012486 AAATCTGGACGCGTCGTTCC 61.012 55.000 30.99 19.61 41.37 3.62
1038 1055 1.874345 AATCTGGACGCGTCGTTCCT 61.874 55.000 30.99 13.86 41.37 3.36
1039 1056 1.874345 ATCTGGACGCGTCGTTCCTT 61.874 55.000 30.99 12.06 41.37 3.36
1040 1057 1.663702 CTGGACGCGTCGTTCCTTT 60.664 57.895 30.99 0.00 41.37 3.11
1041 1058 0.387622 CTGGACGCGTCGTTCCTTTA 60.388 55.000 30.99 9.86 41.37 1.85
1042 1059 0.244450 TGGACGCGTCGTTCCTTTAT 59.756 50.000 30.99 0.00 41.37 1.40
1043 1060 1.337074 TGGACGCGTCGTTCCTTTATT 60.337 47.619 30.99 0.00 41.37 1.40
1044 1061 1.060122 GGACGCGTCGTTCCTTTATTG 59.940 52.381 30.99 0.00 41.37 1.90
1045 1062 1.060122 GACGCGTCGTTCCTTTATTGG 59.940 52.381 25.19 0.00 41.37 3.16
1046 1063 1.073177 CGCGTCGTTCCTTTATTGGT 58.927 50.000 0.00 0.00 0.00 3.67
1047 1064 1.461897 CGCGTCGTTCCTTTATTGGTT 59.538 47.619 0.00 0.00 0.00 3.67
1048 1065 2.096119 CGCGTCGTTCCTTTATTGGTTT 60.096 45.455 0.00 0.00 0.00 3.27
1049 1066 3.231160 GCGTCGTTCCTTTATTGGTTTG 58.769 45.455 0.00 0.00 0.00 2.93
1050 1067 3.231160 CGTCGTTCCTTTATTGGTTTGC 58.769 45.455 0.00 0.00 0.00 3.68
1051 1068 3.304123 CGTCGTTCCTTTATTGGTTTGCA 60.304 43.478 0.00 0.00 0.00 4.08
1052 1069 4.226761 GTCGTTCCTTTATTGGTTTGCAG 58.773 43.478 0.00 0.00 0.00 4.41
1053 1070 3.254657 TCGTTCCTTTATTGGTTTGCAGG 59.745 43.478 0.00 0.00 0.00 4.85
1054 1071 3.613910 CGTTCCTTTATTGGTTTGCAGGG 60.614 47.826 0.00 0.00 0.00 4.45
1055 1072 1.899142 TCCTTTATTGGTTTGCAGGGC 59.101 47.619 0.00 0.00 0.00 5.19
1056 1073 1.901833 CCTTTATTGGTTTGCAGGGCT 59.098 47.619 0.00 0.00 0.00 5.19
1057 1074 2.302733 CCTTTATTGGTTTGCAGGGCTT 59.697 45.455 0.00 0.00 0.00 4.35
1058 1075 3.588955 CTTTATTGGTTTGCAGGGCTTC 58.411 45.455 0.00 0.00 0.00 3.86
1059 1076 2.300956 TATTGGTTTGCAGGGCTTCA 57.699 45.000 0.00 0.00 0.00 3.02
1060 1077 0.971386 ATTGGTTTGCAGGGCTTCAG 59.029 50.000 0.00 0.00 0.00 3.02
1061 1078 1.747325 TTGGTTTGCAGGGCTTCAGC 61.747 55.000 0.00 0.00 41.14 4.26
1089 1106 3.309582 GGAGTCCTCCGCCATCAA 58.690 61.111 0.41 0.00 40.36 2.57
1099 1116 3.804329 GCCATCAACGGGGCCCTA 61.804 66.667 24.38 3.37 44.53 3.53
1113 1130 2.682846 CCTATGGGTGCTGGGCAA 59.317 61.111 0.00 0.00 41.47 4.52
1144 1161 4.208686 CTGTCCGGCGGCCTAGTC 62.209 72.222 23.83 6.82 0.00 2.59
1155 1172 4.208686 CCTAGTCGAGGCGTGGGC 62.209 72.222 0.00 0.00 38.96 5.36
1156 1173 3.449227 CTAGTCGAGGCGTGGGCA 61.449 66.667 0.00 0.00 42.47 5.36
1262 1279 3.649277 GAGATCCACAGCCACGCGT 62.649 63.158 5.58 5.58 0.00 6.01
1264 1281 3.027170 GATCCACAGCCACGCGTTG 62.027 63.158 10.22 7.75 0.00 4.10
1265 1282 3.825160 ATCCACAGCCACGCGTTGT 62.825 57.895 10.22 9.59 36.14 3.32
1266 1283 4.012895 CCACAGCCACGCGTTGTC 62.013 66.667 10.22 2.47 32.92 3.18
1268 1285 2.967076 ACAGCCACGCGTTGTCTG 60.967 61.111 23.23 23.23 28.16 3.51
1269 1286 2.661537 CAGCCACGCGTTGTCTGA 60.662 61.111 21.59 0.00 0.00 3.27
1282 1299 1.183676 TGTCTGAGCTGCTGCAGAGA 61.184 55.000 32.30 22.16 41.42 3.10
1318 1335 2.661866 GGTGCAGACGACGTGCTT 60.662 61.111 4.58 0.00 41.78 3.91
1338 1355 1.085091 GACGAGCTCGACTACTTCCA 58.915 55.000 40.58 0.00 43.02 3.53
1342 1359 2.159366 CGAGCTCGACTACTTCCACATT 60.159 50.000 32.06 0.00 43.02 2.71
1349 1366 3.056821 CGACTACTTCCACATTCAGGACA 60.057 47.826 0.00 0.00 34.19 4.02
1354 1371 2.957402 TCCACATTCAGGACAAGCTT 57.043 45.000 0.00 0.00 0.00 3.74
1355 1372 2.783135 TCCACATTCAGGACAAGCTTC 58.217 47.619 0.00 0.00 0.00 3.86
1359 1376 2.224281 ACATTCAGGACAAGCTTCACGA 60.224 45.455 0.00 0.00 0.00 4.35
1376 1393 1.212229 GACACCTTCGAGACCGTCC 59.788 63.158 0.00 0.00 37.05 4.79
1378 1395 0.898789 ACACCTTCGAGACCGTCCAT 60.899 55.000 0.00 0.00 37.05 3.41
1379 1396 0.458543 CACCTTCGAGACCGTCCATG 60.459 60.000 0.00 0.00 37.05 3.66
1381 1398 0.530744 CCTTCGAGACCGTCCATGAA 59.469 55.000 0.00 0.00 37.05 2.57
1409 1426 1.087771 CGGGTGCGTCCATAACCTTC 61.088 60.000 0.37 0.00 38.11 3.46
1418 1435 2.295349 GTCCATAACCTTCTCCGCGATA 59.705 50.000 8.23 0.00 0.00 2.92
1420 1437 2.035449 CCATAACCTTCTCCGCGATACA 59.965 50.000 8.23 0.00 0.00 2.29
1423 1440 1.028330 ACCTTCTCCGCGATACACGA 61.028 55.000 8.23 0.00 45.77 4.35
1424 1441 0.311165 CCTTCTCCGCGATACACGAT 59.689 55.000 8.23 0.00 45.77 3.73
1426 1443 2.572243 CTTCTCCGCGATACACGATAC 58.428 52.381 8.23 0.00 45.77 2.24
1429 1446 1.003223 CTCCGCGATACACGATACACA 60.003 52.381 8.23 0.00 45.77 3.72
1430 1447 1.401199 TCCGCGATACACGATACACAA 59.599 47.619 8.23 0.00 45.77 3.33
1437 1454 4.860352 CGATACACGATACACAACCAAAGA 59.140 41.667 0.00 0.00 45.77 2.52
1461 1478 2.337532 CAAGCTGCTTGGGTGTGC 59.662 61.111 29.91 0.00 37.77 4.57
1462 1479 2.123769 AAGCTGCTTGGGTGTGCA 60.124 55.556 15.16 0.00 37.63 4.57
1470 1487 2.191354 CTTGGGTGTGCATCGTGCTG 62.191 60.000 10.54 0.00 45.31 4.41
1471 1488 4.107051 GGGTGTGCATCGTGCTGC 62.107 66.667 10.54 0.00 45.31 5.25
1496 1516 3.092081 GCAAGCGGCACTTACAAAG 57.908 52.632 1.45 0.00 43.97 2.77
1498 1518 0.310543 CAAGCGGCACTTACAAAGCA 59.689 50.000 1.45 0.00 36.04 3.91
1512 1532 3.151554 ACAAAGCAGATGAGTCATGCAA 58.848 40.909 18.46 0.00 42.45 4.08
1513 1533 3.057736 ACAAAGCAGATGAGTCATGCAAC 60.058 43.478 18.46 1.94 42.45 4.17
1519 1539 1.061711 GATGAGTCATGCAACTGCGTC 59.938 52.381 11.20 0.00 45.83 5.19
1520 1540 0.249826 TGAGTCATGCAACTGCGTCA 60.250 50.000 0.00 0.00 45.83 4.35
1543 1563 4.253257 CTCGCCTCCCGTACTCGC 62.253 72.222 0.00 0.00 38.35 5.03
1544 1564 4.790962 TCGCCTCCCGTACTCGCT 62.791 66.667 0.00 0.00 38.35 4.93
1546 1566 2.829458 GCCTCCCGTACTCGCTCT 60.829 66.667 0.00 0.00 35.54 4.09
1550 1570 0.463295 CTCCCGTACTCGCTCTACCA 60.463 60.000 0.00 0.00 35.54 3.25
1552 1572 0.592148 CCCGTACTCGCTCTACCATC 59.408 60.000 0.00 0.00 35.54 3.51
1555 1575 1.880675 CGTACTCGCTCTACCATCCAT 59.119 52.381 0.00 0.00 0.00 3.41
1557 1577 0.390860 ACTCGCTCTACCATCCATGC 59.609 55.000 0.00 0.00 0.00 4.06
1558 1578 0.390492 CTCGCTCTACCATCCATGCA 59.610 55.000 0.00 0.00 0.00 3.96
1567 1587 3.011566 ACCATCCATGCATTCGGTAAA 57.988 42.857 0.00 0.00 0.00 2.01
1586 1606 6.763101 GGTAAACGACTTCTATGCTCTTTTC 58.237 40.000 0.00 0.00 0.00 2.29
1601 1621 7.423844 TGCTCTTTTCCTCTATCTGTTCATA 57.576 36.000 0.00 0.00 0.00 2.15
1639 1659 9.848710 AGTGATACTTCTTTTGATGATGATGAT 57.151 29.630 0.00 0.00 0.00 2.45
1640 1660 9.880064 GTGATACTTCTTTTGATGATGATGATG 57.120 33.333 0.00 0.00 0.00 3.07
1641 1661 9.841295 TGATACTTCTTTTGATGATGATGATGA 57.159 29.630 0.00 0.00 0.00 2.92
1651 1671 7.166691 TGATGATGATGATGACGATGATAGT 57.833 36.000 0.00 0.00 0.00 2.12
1658 1678 8.055279 TGATGATGACGATGATAGTAAGCATA 57.945 34.615 0.00 0.00 29.92 3.14
1665 1685 6.014647 ACGATGATAGTAAGCATACCCCTAA 58.985 40.000 0.00 0.00 30.10 2.69
1674 1694 5.727243 AAGCATACCCCTAAAGTACCAAT 57.273 39.130 0.00 0.00 0.00 3.16
1676 1696 4.477213 AGCATACCCCTAAAGTACCAATGT 59.523 41.667 0.00 0.00 0.00 2.71
1696 1716 7.364939 CCAATGTTGAAATTTGATAGGGTGGAT 60.365 37.037 0.00 0.00 0.00 3.41
1703 1723 7.127186 TGAAATTTGATAGGGTGGATGTCTCTA 59.873 37.037 0.00 0.00 0.00 2.43
1704 1724 5.871396 TTTGATAGGGTGGATGTCTCTAC 57.129 43.478 0.00 0.00 32.40 2.59
1705 1725 4.536295 TGATAGGGTGGATGTCTCTACA 57.464 45.455 0.00 0.00 40.69 2.74
1717 1737 7.335422 GTGGATGTCTCTACAAGAATGAAATGT 59.665 37.037 0.00 0.00 39.58 2.71
1723 1743 9.371136 GTCTCTACAAGAATGAAATGTATCACA 57.629 33.333 0.00 0.00 35.21 3.58
1741 1761 7.665559 TGTATCACATATGAATTAAAGCCCCTC 59.334 37.037 10.38 0.00 38.69 4.30
1766 1786 3.330701 TGCTAAGGTCTCCACCATTCTTT 59.669 43.478 0.00 0.00 46.68 2.52
1772 1792 3.372025 GGTCTCCACCATTCTTTGCCTAT 60.372 47.826 0.00 0.00 43.17 2.57
1773 1793 3.879892 GTCTCCACCATTCTTTGCCTATC 59.120 47.826 0.00 0.00 0.00 2.08
1774 1794 3.523157 TCTCCACCATTCTTTGCCTATCA 59.477 43.478 0.00 0.00 0.00 2.15
1775 1795 3.881688 CTCCACCATTCTTTGCCTATCAG 59.118 47.826 0.00 0.00 0.00 2.90
1776 1796 2.954318 CCACCATTCTTTGCCTATCAGG 59.046 50.000 0.00 0.00 38.80 3.86
1787 1807 2.215907 CCTATCAGGCTCTGTCGTTG 57.784 55.000 2.68 0.00 32.61 4.10
1788 1808 1.565305 CTATCAGGCTCTGTCGTTGC 58.435 55.000 2.68 0.00 32.61 4.17
1789 1809 0.175760 TATCAGGCTCTGTCGTTGCC 59.824 55.000 0.00 0.00 46.42 4.52
1792 1812 2.811317 GGCTCTGTCGTTGCCGAG 60.811 66.667 0.00 0.00 45.26 4.63
1793 1813 2.258591 GCTCTGTCGTTGCCGAGA 59.741 61.111 0.00 0.00 45.26 4.04
2176 2891 3.071874 TGGACATCCACTTGAACCATC 57.928 47.619 0.00 0.00 42.01 3.51
2177 2892 2.290896 TGGACATCCACTTGAACCATCC 60.291 50.000 0.00 0.00 42.01 3.51
2178 2893 2.290896 GGACATCCACTTGAACCATCCA 60.291 50.000 0.00 0.00 35.64 3.41
2179 2894 2.749621 GACATCCACTTGAACCATCCAC 59.250 50.000 0.00 0.00 0.00 4.02
2180 2895 2.376518 ACATCCACTTGAACCATCCACT 59.623 45.455 0.00 0.00 0.00 4.00
2181 2896 3.181429 ACATCCACTTGAACCATCCACTT 60.181 43.478 0.00 0.00 0.00 3.16
2182 2897 2.862541 TCCACTTGAACCATCCACTTG 58.137 47.619 0.00 0.00 0.00 3.16
2183 2898 2.441375 TCCACTTGAACCATCCACTTGA 59.559 45.455 0.00 0.00 0.00 3.02
2184 2899 3.117701 TCCACTTGAACCATCCACTTGAA 60.118 43.478 0.00 0.00 0.00 2.69
2649 3658 4.039730 TGCATAGGTGAGCTCCTTAGATTC 59.960 45.833 12.15 0.00 38.86 2.52
2652 3661 3.445008 AGGTGAGCTCCTTAGATTCACA 58.555 45.455 12.15 0.00 39.09 3.58
2736 4056 5.337491 CCATCGGGATTTCCTGTTGAAAAAT 60.337 40.000 15.22 0.00 45.67 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 125 1.677637 GGAGGTTCCTCGAGCGGATT 61.678 60.000 6.99 0.00 32.53 3.01
184 186 2.327343 GCGACCTGCTCAATGTGCA 61.327 57.895 9.70 9.70 41.73 4.57
210 212 2.565841 CCCTTCGGACAGATTTGATCC 58.434 52.381 0.00 0.00 0.00 3.36
216 218 1.534729 GTTTGCCCTTCGGACAGATT 58.465 50.000 0.00 0.00 0.00 2.40
557 571 0.858598 TCCTTCTACCCCTCCCTCCA 60.859 60.000 0.00 0.00 0.00 3.86
648 665 0.899720 ATTAGGACTCGGGCGAAACA 59.100 50.000 0.00 0.00 0.00 2.83
649 666 2.019948 AATTAGGACTCGGGCGAAAC 57.980 50.000 0.00 0.00 0.00 2.78
650 667 2.027929 TGAAATTAGGACTCGGGCGAAA 60.028 45.455 0.00 0.00 0.00 3.46
651 668 1.551430 TGAAATTAGGACTCGGGCGAA 59.449 47.619 0.00 0.00 0.00 4.70
652 669 1.187974 TGAAATTAGGACTCGGGCGA 58.812 50.000 0.00 0.00 0.00 5.54
653 670 2.240493 ATGAAATTAGGACTCGGGCG 57.760 50.000 0.00 0.00 0.00 6.13
654 671 4.672409 CAAAATGAAATTAGGACTCGGGC 58.328 43.478 0.00 0.00 33.67 6.13
655 672 4.440112 GGCAAAATGAAATTAGGACTCGGG 60.440 45.833 0.00 0.00 33.67 5.14
656 673 4.399303 AGGCAAAATGAAATTAGGACTCGG 59.601 41.667 0.00 0.00 33.67 4.63
657 674 5.567138 AGGCAAAATGAAATTAGGACTCG 57.433 39.130 0.00 0.00 33.67 4.18
658 675 7.062255 CGAAAAGGCAAAATGAAATTAGGACTC 59.938 37.037 0.00 0.00 33.67 3.36
659 676 6.868339 CGAAAAGGCAAAATGAAATTAGGACT 59.132 34.615 0.00 0.00 33.67 3.85
660 677 6.866248 TCGAAAAGGCAAAATGAAATTAGGAC 59.134 34.615 0.00 0.00 33.67 3.85
661 678 6.987386 TCGAAAAGGCAAAATGAAATTAGGA 58.013 32.000 0.00 0.00 33.67 2.94
662 679 7.832503 ATCGAAAAGGCAAAATGAAATTAGG 57.167 32.000 0.00 0.00 33.67 2.69
668 685 9.487790 AGATTAAAATCGAAAAGGCAAAATGAA 57.512 25.926 0.00 0.00 40.35 2.57
669 686 9.139174 GAGATTAAAATCGAAAAGGCAAAATGA 57.861 29.630 0.00 0.00 40.35 2.57
670 687 8.382875 GGAGATTAAAATCGAAAAGGCAAAATG 58.617 33.333 0.00 0.00 40.35 2.32
671 688 7.549134 GGGAGATTAAAATCGAAAAGGCAAAAT 59.451 33.333 0.00 0.00 40.35 1.82
672 689 6.871492 GGGAGATTAAAATCGAAAAGGCAAAA 59.129 34.615 0.00 0.00 40.35 2.44
673 690 6.210584 AGGGAGATTAAAATCGAAAAGGCAAA 59.789 34.615 0.00 0.00 40.35 3.68
674 691 5.714806 AGGGAGATTAAAATCGAAAAGGCAA 59.285 36.000 0.00 0.00 40.35 4.52
675 692 5.261216 AGGGAGATTAAAATCGAAAAGGCA 58.739 37.500 0.00 0.00 40.35 4.75
676 693 5.836821 AGGGAGATTAAAATCGAAAAGGC 57.163 39.130 0.00 0.00 40.35 4.35
677 694 8.182227 GTGTTAGGGAGATTAAAATCGAAAAGG 58.818 37.037 0.00 0.00 40.35 3.11
678 695 7.903431 CGTGTTAGGGAGATTAAAATCGAAAAG 59.097 37.037 0.00 0.00 40.35 2.27
679 696 7.624764 GCGTGTTAGGGAGATTAAAATCGAAAA 60.625 37.037 0.00 0.00 40.35 2.29
680 697 6.183360 GCGTGTTAGGGAGATTAAAATCGAAA 60.183 38.462 0.00 0.00 40.35 3.46
681 698 5.292589 GCGTGTTAGGGAGATTAAAATCGAA 59.707 40.000 0.00 0.00 40.35 3.71
682 699 4.807304 GCGTGTTAGGGAGATTAAAATCGA 59.193 41.667 0.00 0.00 40.35 3.59
683 700 4.809426 AGCGTGTTAGGGAGATTAAAATCG 59.191 41.667 0.00 0.00 40.35 3.34
684 701 5.815740 TGAGCGTGTTAGGGAGATTAAAATC 59.184 40.000 0.00 0.00 35.64 2.17
685 702 5.741011 TGAGCGTGTTAGGGAGATTAAAAT 58.259 37.500 0.00 0.00 0.00 1.82
686 703 5.155278 TGAGCGTGTTAGGGAGATTAAAA 57.845 39.130 0.00 0.00 0.00 1.52
687 704 4.811969 TGAGCGTGTTAGGGAGATTAAA 57.188 40.909 0.00 0.00 0.00 1.52
688 705 4.404394 TGATGAGCGTGTTAGGGAGATTAA 59.596 41.667 0.00 0.00 0.00 1.40
689 706 3.958147 TGATGAGCGTGTTAGGGAGATTA 59.042 43.478 0.00 0.00 0.00 1.75
690 707 2.766263 TGATGAGCGTGTTAGGGAGATT 59.234 45.455 0.00 0.00 0.00 2.40
691 708 2.363680 CTGATGAGCGTGTTAGGGAGAT 59.636 50.000 0.00 0.00 0.00 2.75
692 709 1.751351 CTGATGAGCGTGTTAGGGAGA 59.249 52.381 0.00 0.00 0.00 3.71
693 710 1.478510 ACTGATGAGCGTGTTAGGGAG 59.521 52.381 0.00 0.00 0.00 4.30
694 711 1.557099 ACTGATGAGCGTGTTAGGGA 58.443 50.000 0.00 0.00 0.00 4.20
695 712 2.386661 AACTGATGAGCGTGTTAGGG 57.613 50.000 0.00 0.00 0.00 3.53
696 713 4.433615 ACATAACTGATGAGCGTGTTAGG 58.566 43.478 0.00 0.00 39.06 2.69
697 714 4.504461 GGACATAACTGATGAGCGTGTTAG 59.496 45.833 0.00 0.00 39.06 2.34
698 715 4.430007 GGACATAACTGATGAGCGTGTTA 58.570 43.478 0.00 0.00 39.06 2.41
699 716 3.262420 GGACATAACTGATGAGCGTGTT 58.738 45.455 0.00 0.00 39.06 3.32
700 717 2.418746 GGGACATAACTGATGAGCGTGT 60.419 50.000 0.00 0.00 39.06 4.49
701 718 2.205074 GGGACATAACTGATGAGCGTG 58.795 52.381 0.00 0.00 39.06 5.34
702 719 1.139058 GGGGACATAACTGATGAGCGT 59.861 52.381 0.00 0.00 39.06 5.07
703 720 1.414181 AGGGGACATAACTGATGAGCG 59.586 52.381 0.00 0.00 39.06 5.03
704 721 3.471680 GAAGGGGACATAACTGATGAGC 58.528 50.000 0.00 0.00 39.06 4.26
705 722 3.722147 CGAAGGGGACATAACTGATGAG 58.278 50.000 0.00 0.00 39.06 2.90
706 723 2.158957 GCGAAGGGGACATAACTGATGA 60.159 50.000 0.00 0.00 39.06 2.92
707 724 2.213499 GCGAAGGGGACATAACTGATG 58.787 52.381 0.00 0.00 41.79 3.07
708 725 1.141053 GGCGAAGGGGACATAACTGAT 59.859 52.381 0.00 0.00 0.00 2.90
709 726 0.539986 GGCGAAGGGGACATAACTGA 59.460 55.000 0.00 0.00 0.00 3.41
710 727 0.810031 CGGCGAAGGGGACATAACTG 60.810 60.000 0.00 0.00 0.00 3.16
711 728 1.520666 CGGCGAAGGGGACATAACT 59.479 57.895 0.00 0.00 0.00 2.24
712 729 2.178235 GCGGCGAAGGGGACATAAC 61.178 63.158 12.98 0.00 0.00 1.89
713 730 2.188469 GCGGCGAAGGGGACATAA 59.812 61.111 12.98 0.00 0.00 1.90
714 731 3.857038 GGCGGCGAAGGGGACATA 61.857 66.667 12.98 0.00 0.00 2.29
727 744 3.964875 GCATGTTATGGCCGGCGG 61.965 66.667 24.35 24.35 0.00 6.13
728 745 2.896801 GAGCATGTTATGGCCGGCG 61.897 63.158 22.54 4.62 0.00 6.46
729 746 2.896801 CGAGCATGTTATGGCCGGC 61.897 63.158 21.18 21.18 0.00 6.13
730 747 2.253758 CCGAGCATGTTATGGCCGG 61.254 63.158 0.00 0.00 37.45 6.13
731 748 2.896801 GCCGAGCATGTTATGGCCG 61.897 63.158 12.62 0.00 39.83 6.13
732 749 2.896801 CGCCGAGCATGTTATGGCC 61.897 63.158 16.43 0.00 42.76 5.36
733 750 2.633657 CGCCGAGCATGTTATGGC 59.366 61.111 13.38 13.38 42.29 4.40
734 751 1.523711 ACCGCCGAGCATGTTATGG 60.524 57.895 0.00 0.00 0.00 2.74
735 752 0.809636 TCACCGCCGAGCATGTTATG 60.810 55.000 0.00 0.00 0.00 1.90
736 753 0.106708 ATCACCGCCGAGCATGTTAT 59.893 50.000 0.00 0.00 0.00 1.89
737 754 0.809636 CATCACCGCCGAGCATGTTA 60.810 55.000 0.00 0.00 0.00 2.41
738 755 2.108514 CATCACCGCCGAGCATGTT 61.109 57.895 0.00 0.00 0.00 2.71
739 756 2.512286 CATCACCGCCGAGCATGT 60.512 61.111 0.00 0.00 0.00 3.21
740 757 3.945434 GCATCACCGCCGAGCATG 61.945 66.667 0.00 0.00 0.00 4.06
741 758 4.166888 AGCATCACCGCCGAGCAT 62.167 61.111 0.00 0.00 0.00 3.79
766 783 1.796796 GTTCAGTTGATGCTCGGGC 59.203 57.895 0.00 0.00 39.26 6.13
767 784 1.361668 CCGTTCAGTTGATGCTCGGG 61.362 60.000 0.00 0.00 39.47 5.14
768 785 0.389817 TCCGTTCAGTTGATGCTCGG 60.390 55.000 0.00 0.00 42.23 4.63
769 786 0.716108 GTCCGTTCAGTTGATGCTCG 59.284 55.000 0.00 0.00 0.00 5.03
770 787 0.716108 CGTCCGTTCAGTTGATGCTC 59.284 55.000 0.00 0.00 0.00 4.26
771 788 0.317160 TCGTCCGTTCAGTTGATGCT 59.683 50.000 0.00 0.00 0.00 3.79
772 789 0.716108 CTCGTCCGTTCAGTTGATGC 59.284 55.000 0.00 0.00 0.00 3.91
773 790 1.986378 GTCTCGTCCGTTCAGTTGATG 59.014 52.381 0.00 0.00 0.00 3.07
774 791 1.887198 AGTCTCGTCCGTTCAGTTGAT 59.113 47.619 0.00 0.00 0.00 2.57
775 792 1.315690 AGTCTCGTCCGTTCAGTTGA 58.684 50.000 0.00 0.00 0.00 3.18
776 793 1.787155 CAAGTCTCGTCCGTTCAGTTG 59.213 52.381 0.00 0.00 0.00 3.16
777 794 1.269621 CCAAGTCTCGTCCGTTCAGTT 60.270 52.381 0.00 0.00 0.00 3.16
778 795 0.314302 CCAAGTCTCGTCCGTTCAGT 59.686 55.000 0.00 0.00 0.00 3.41
779 796 1.009389 GCCAAGTCTCGTCCGTTCAG 61.009 60.000 0.00 0.00 0.00 3.02
780 797 1.006571 GCCAAGTCTCGTCCGTTCA 60.007 57.895 0.00 0.00 0.00 3.18
781 798 1.009389 CAGCCAAGTCTCGTCCGTTC 61.009 60.000 0.00 0.00 0.00 3.95
782 799 1.006102 CAGCCAAGTCTCGTCCGTT 60.006 57.895 0.00 0.00 0.00 4.44
783 800 2.651361 CAGCCAAGTCTCGTCCGT 59.349 61.111 0.00 0.00 0.00 4.69
830 847 0.515127 CAAATCAAGCCACGTACGCA 59.485 50.000 16.72 0.00 0.00 5.24
857 874 1.066929 GTGGTGCCAGGCCTTATTTTG 60.067 52.381 9.64 0.00 0.00 2.44
867 884 2.087857 TTTAAGGGGGTGGTGCCAGG 62.088 60.000 0.00 0.00 39.65 4.45
869 886 0.489567 ATTTTAAGGGGGTGGTGCCA 59.510 50.000 0.00 0.00 39.65 4.92
873 890 2.311841 CCTCTGATTTTAAGGGGGTGGT 59.688 50.000 0.00 0.00 30.92 4.16
892 909 6.503570 CCCTTTCTAATCTAATCATCTCCCCT 59.496 42.308 0.00 0.00 0.00 4.79
934 951 1.202428 GCTCCCACTTCATCCTACGTC 60.202 57.143 0.00 0.00 0.00 4.34
935 952 0.824759 GCTCCCACTTCATCCTACGT 59.175 55.000 0.00 0.00 0.00 3.57
983 1000 0.774908 TTCAGTTGGGATCCGGGTTT 59.225 50.000 5.45 0.00 0.00 3.27
986 1003 1.449601 CGTTCAGTTGGGATCCGGG 60.450 63.158 5.45 0.00 0.00 5.73
998 1015 1.157870 AGTTCCGTTGGTGCGTTCAG 61.158 55.000 0.00 0.00 0.00 3.02
1000 1017 1.219646 TTAGTTCCGTTGGTGCGTTC 58.780 50.000 0.00 0.00 0.00 3.95
1001 1018 1.666054 TTTAGTTCCGTTGGTGCGTT 58.334 45.000 0.00 0.00 0.00 4.84
1002 1019 1.802365 GATTTAGTTCCGTTGGTGCGT 59.198 47.619 0.00 0.00 0.00 5.24
1004 1021 2.161609 CCAGATTTAGTTCCGTTGGTGC 59.838 50.000 0.00 0.00 0.00 5.01
1006 1023 3.671716 GTCCAGATTTAGTTCCGTTGGT 58.328 45.455 0.00 0.00 0.00 3.67
1007 1024 2.671396 CGTCCAGATTTAGTTCCGTTGG 59.329 50.000 0.00 0.00 0.00 3.77
1008 1025 2.093783 GCGTCCAGATTTAGTTCCGTTG 59.906 50.000 0.00 0.00 0.00 4.10
1009 1026 2.344025 GCGTCCAGATTTAGTTCCGTT 58.656 47.619 0.00 0.00 0.00 4.44
1010 1027 1.734707 CGCGTCCAGATTTAGTTCCGT 60.735 52.381 0.00 0.00 0.00 4.69
1012 1029 1.925185 GACGCGTCCAGATTTAGTTCC 59.075 52.381 28.61 0.00 0.00 3.62
1014 1031 1.068055 ACGACGCGTCCAGATTTAGTT 60.068 47.619 31.84 5.00 33.69 2.24
1015 1032 0.524862 ACGACGCGTCCAGATTTAGT 59.475 50.000 31.84 18.62 33.69 2.24
1016 1033 1.582502 GAACGACGCGTCCAGATTTAG 59.417 52.381 31.84 17.96 39.99 1.85
1017 1034 1.621107 GAACGACGCGTCCAGATTTA 58.379 50.000 31.84 0.00 39.99 1.40
1018 1035 1.012486 GGAACGACGCGTCCAGATTT 61.012 55.000 31.84 17.21 39.99 2.17
1019 1036 1.445582 GGAACGACGCGTCCAGATT 60.446 57.895 31.84 20.62 39.99 2.40
1020 1037 1.874345 AAGGAACGACGCGTCCAGAT 61.874 55.000 31.84 14.76 39.99 2.90
1021 1038 2.079020 AAAGGAACGACGCGTCCAGA 62.079 55.000 31.84 0.00 39.99 3.86
1022 1039 0.387622 TAAAGGAACGACGCGTCCAG 60.388 55.000 31.84 21.56 39.99 3.86
1023 1040 0.244450 ATAAAGGAACGACGCGTCCA 59.756 50.000 31.84 4.71 39.99 4.02
1024 1041 1.060122 CAATAAAGGAACGACGCGTCC 59.940 52.381 31.84 19.61 39.99 4.79
1025 1042 1.060122 CCAATAAAGGAACGACGCGTC 59.940 52.381 28.96 28.96 39.99 5.19
1026 1043 1.073177 CCAATAAAGGAACGACGCGT 58.927 50.000 13.85 13.85 43.97 6.01
1027 1044 1.073177 ACCAATAAAGGAACGACGCG 58.927 50.000 3.53 3.53 0.00 6.01
1028 1045 3.231160 CAAACCAATAAAGGAACGACGC 58.769 45.455 0.00 0.00 0.00 5.19
1029 1046 3.231160 GCAAACCAATAAAGGAACGACG 58.769 45.455 0.00 0.00 0.00 5.12
1030 1047 4.226761 CTGCAAACCAATAAAGGAACGAC 58.773 43.478 0.00 0.00 0.00 4.34
1031 1048 3.254657 CCTGCAAACCAATAAAGGAACGA 59.745 43.478 0.00 0.00 0.00 3.85
1032 1049 3.574614 CCTGCAAACCAATAAAGGAACG 58.425 45.455 0.00 0.00 0.00 3.95
1033 1050 3.864540 GCCCTGCAAACCAATAAAGGAAC 60.865 47.826 0.00 0.00 0.00 3.62
1034 1051 2.301583 GCCCTGCAAACCAATAAAGGAA 59.698 45.455 0.00 0.00 0.00 3.36
1035 1052 1.899142 GCCCTGCAAACCAATAAAGGA 59.101 47.619 0.00 0.00 0.00 3.36
1036 1053 1.901833 AGCCCTGCAAACCAATAAAGG 59.098 47.619 0.00 0.00 0.00 3.11
1037 1054 3.006752 TGAAGCCCTGCAAACCAATAAAG 59.993 43.478 0.00 0.00 0.00 1.85
1038 1055 2.968574 TGAAGCCCTGCAAACCAATAAA 59.031 40.909 0.00 0.00 0.00 1.40
1039 1056 2.562298 CTGAAGCCCTGCAAACCAATAA 59.438 45.455 0.00 0.00 0.00 1.40
1040 1057 2.170166 CTGAAGCCCTGCAAACCAATA 58.830 47.619 0.00 0.00 0.00 1.90
1041 1058 0.971386 CTGAAGCCCTGCAAACCAAT 59.029 50.000 0.00 0.00 0.00 3.16
1042 1059 1.747325 GCTGAAGCCCTGCAAACCAA 61.747 55.000 0.00 0.00 39.25 3.67
1043 1060 2.202395 GCTGAAGCCCTGCAAACCA 61.202 57.895 0.00 0.00 39.25 3.67
1044 1061 2.653115 GCTGAAGCCCTGCAAACC 59.347 61.111 0.00 0.00 39.25 3.27
1096 1113 1.454479 CTTGCCCAGCACCCATAGG 60.454 63.158 0.00 0.00 38.71 2.57
1098 1115 2.682846 CCTTGCCCAGCACCCATA 59.317 61.111 0.00 0.00 38.71 2.74
1168 1185 2.093216 CTCGATGTTGAGGCCAAGC 58.907 57.895 5.01 0.00 32.06 4.01
1176 1193 1.618343 TCTTGAGTGCCTCGATGTTGA 59.382 47.619 0.00 0.00 32.35 3.18
1181 1198 0.965866 TCCGTCTTGAGTGCCTCGAT 60.966 55.000 0.00 0.00 32.35 3.59
1189 1206 0.039035 AGAGGAGCTCCGTCTTGAGT 59.961 55.000 26.95 6.87 42.08 3.41
1239 1256 4.554036 GGCTGTGGATCTCCCGGC 62.554 72.222 0.00 8.99 37.65 6.13
1241 1258 2.187946 GTGGCTGTGGATCTCCCG 59.812 66.667 0.00 0.00 37.93 5.14
1262 1279 0.320508 CTCTGCAGCAGCTCAGACAA 60.321 55.000 18.43 0.00 42.74 3.18
1264 1281 0.737019 GTCTCTGCAGCAGCTCAGAC 60.737 60.000 21.01 21.01 40.47 3.51
1265 1282 0.899253 AGTCTCTGCAGCAGCTCAGA 60.899 55.000 18.43 12.61 42.74 3.27
1266 1283 0.738063 CAGTCTCTGCAGCAGCTCAG 60.738 60.000 18.43 10.32 42.74 3.35
1268 1285 4.188702 CAGTCTCTGCAGCAGCTC 57.811 61.111 18.43 9.97 42.74 4.09
1303 1320 1.949133 GTCAAGCACGTCGTCTGCA 60.949 57.895 10.08 0.00 37.08 4.41
1318 1335 1.085091 GGAAGTAGTCGAGCTCGTCA 58.915 55.000 33.33 14.86 40.80 4.35
1338 1355 2.146342 CGTGAAGCTTGTCCTGAATGT 58.854 47.619 2.10 0.00 0.00 2.71
1342 1359 0.750249 TGTCGTGAAGCTTGTCCTGA 59.250 50.000 2.10 0.00 0.00 3.86
1349 1366 2.900528 CGAAGGTGTCGTGAAGCTT 58.099 52.632 0.00 0.00 45.09 3.74
1359 1376 0.898789 ATGGACGGTCTCGAAGGTGT 60.899 55.000 8.23 0.00 40.11 4.16
1374 1391 2.180769 CGCGGTCGTCTTCATGGA 59.819 61.111 0.00 0.00 0.00 3.41
1376 1393 2.885644 CCCGCGGTCGTCTTCATG 60.886 66.667 26.12 0.00 0.00 3.07
1378 1395 4.351938 CACCCGCGGTCGTCTTCA 62.352 66.667 26.12 0.00 31.02 3.02
1409 1426 1.003223 TGTGTATCGTGTATCGCGGAG 60.003 52.381 6.13 0.00 37.97 4.63
1418 1435 3.751175 CCATCTTTGGTTGTGTATCGTGT 59.249 43.478 0.00 0.00 38.30 4.49
1420 1437 4.280436 TCCATCTTTGGTTGTGTATCGT 57.720 40.909 0.00 0.00 44.06 3.73
1423 1440 4.735369 TGGTTCCATCTTTGGTTGTGTAT 58.265 39.130 0.00 0.00 44.06 2.29
1424 1441 4.171878 TGGTTCCATCTTTGGTTGTGTA 57.828 40.909 0.00 0.00 44.06 2.90
1426 1443 3.799917 GCTTGGTTCCATCTTTGGTTGTG 60.800 47.826 0.00 0.00 44.06 3.33
1429 1446 2.629617 CAGCTTGGTTCCATCTTTGGTT 59.370 45.455 0.00 0.00 44.06 3.67
1430 1447 2.242043 CAGCTTGGTTCCATCTTTGGT 58.758 47.619 0.00 0.00 44.06 3.67
1461 1478 3.090656 CAGCAGAGCAGCACGATG 58.909 61.111 0.00 0.00 36.85 3.84
1462 1479 2.818714 GCAGCAGAGCAGCACGAT 60.819 61.111 1.36 0.00 40.73 3.73
1481 1501 0.250295 TCTGCTTTGTAAGTGCCGCT 60.250 50.000 0.00 0.00 0.00 5.52
1483 1503 2.076100 TCATCTGCTTTGTAAGTGCCG 58.924 47.619 0.00 0.00 0.00 5.69
1485 1505 3.748048 TGACTCATCTGCTTTGTAAGTGC 59.252 43.478 0.00 0.00 0.00 4.40
1496 1516 1.202154 GCAGTTGCATGACTCATCTGC 60.202 52.381 14.86 14.86 44.67 4.26
1498 1518 1.338484 ACGCAGTTGCATGACTCATCT 60.338 47.619 0.00 0.00 37.78 2.90
1531 1551 0.463295 TGGTAGAGCGAGTACGGGAG 60.463 60.000 0.00 0.00 40.15 4.30
1543 1563 2.224378 ACCGAATGCATGGATGGTAGAG 60.224 50.000 9.94 0.00 0.00 2.43
1544 1564 1.768275 ACCGAATGCATGGATGGTAGA 59.232 47.619 9.94 0.00 0.00 2.59
1546 1566 3.847671 TTACCGAATGCATGGATGGTA 57.152 42.857 11.10 11.10 0.00 3.25
1550 1570 2.912771 TCGTTTACCGAATGCATGGAT 58.087 42.857 9.94 0.00 44.03 3.41
1567 1587 4.464597 AGAGGAAAAGAGCATAGAAGTCGT 59.535 41.667 0.00 0.00 0.00 4.34
1573 1593 7.343057 TGAACAGATAGAGGAAAAGAGCATAGA 59.657 37.037 0.00 0.00 0.00 1.98
1576 1596 6.305272 TGAACAGATAGAGGAAAAGAGCAT 57.695 37.500 0.00 0.00 0.00 3.79
1618 1638 7.981225 TCGTCATCATCATCATCAAAAGAAGTA 59.019 33.333 0.00 0.00 0.00 2.24
1619 1639 6.820152 TCGTCATCATCATCATCAAAAGAAGT 59.180 34.615 0.00 0.00 0.00 3.01
1620 1640 7.242914 TCGTCATCATCATCATCAAAAGAAG 57.757 36.000 0.00 0.00 0.00 2.85
1622 1642 6.987992 TCATCGTCATCATCATCATCAAAAGA 59.012 34.615 0.00 0.00 0.00 2.52
1623 1643 7.186021 TCATCGTCATCATCATCATCAAAAG 57.814 36.000 0.00 0.00 0.00 2.27
1625 1645 8.092687 ACTATCATCGTCATCATCATCATCAAA 58.907 33.333 0.00 0.00 0.00 2.69
1626 1646 7.609056 ACTATCATCGTCATCATCATCATCAA 58.391 34.615 0.00 0.00 0.00 2.57
1627 1647 7.166691 ACTATCATCGTCATCATCATCATCA 57.833 36.000 0.00 0.00 0.00 3.07
1628 1648 9.235537 CTTACTATCATCGTCATCATCATCATC 57.764 37.037 0.00 0.00 0.00 2.92
1629 1649 7.705752 GCTTACTATCATCGTCATCATCATCAT 59.294 37.037 0.00 0.00 0.00 2.45
1630 1650 7.031975 GCTTACTATCATCGTCATCATCATCA 58.968 38.462 0.00 0.00 0.00 3.07
1631 1651 7.031975 TGCTTACTATCATCGTCATCATCATC 58.968 38.462 0.00 0.00 0.00 2.92
1632 1652 6.928520 TGCTTACTATCATCGTCATCATCAT 58.071 36.000 0.00 0.00 0.00 2.45
1633 1653 6.331369 TGCTTACTATCATCGTCATCATCA 57.669 37.500 0.00 0.00 0.00 3.07
1634 1654 7.433719 GGTATGCTTACTATCATCGTCATCATC 59.566 40.741 9.39 0.00 0.00 2.92
1635 1655 7.261325 GGTATGCTTACTATCATCGTCATCAT 58.739 38.462 9.39 0.00 0.00 2.45
1636 1656 6.350194 GGGTATGCTTACTATCATCGTCATCA 60.350 42.308 9.39 0.00 0.00 3.07
1637 1657 6.037098 GGGTATGCTTACTATCATCGTCATC 58.963 44.000 9.39 0.00 0.00 2.92
1638 1658 5.105310 GGGGTATGCTTACTATCATCGTCAT 60.105 44.000 9.39 0.00 0.00 3.06
1639 1659 4.219944 GGGGTATGCTTACTATCATCGTCA 59.780 45.833 9.39 0.00 0.00 4.35
1640 1660 4.463186 AGGGGTATGCTTACTATCATCGTC 59.537 45.833 9.39 0.00 0.00 4.20
1641 1661 4.417437 AGGGGTATGCTTACTATCATCGT 58.583 43.478 9.39 0.00 0.00 3.73
1642 1662 6.525578 TTAGGGGTATGCTTACTATCATCG 57.474 41.667 9.39 0.00 0.00 3.84
1651 1671 6.159046 ACATTGGTACTTTAGGGGTATGCTTA 59.841 38.462 0.00 0.00 0.00 3.09
1658 1678 5.327737 TTCAACATTGGTACTTTAGGGGT 57.672 39.130 0.00 0.00 0.00 4.95
1665 1685 8.531146 CCCTATCAAATTTCAACATTGGTACTT 58.469 33.333 0.00 0.00 0.00 2.24
1674 1694 6.015918 ACATCCACCCTATCAAATTTCAACA 58.984 36.000 0.00 0.00 0.00 3.33
1676 1696 6.493166 AGACATCCACCCTATCAAATTTCAA 58.507 36.000 0.00 0.00 0.00 2.69
1696 1716 9.371136 GTGATACATTTCATTCTTGTAGAGACA 57.629 33.333 0.00 0.00 33.02 3.41
1717 1737 7.884877 CAGAGGGGCTTTAATTCATATGTGATA 59.115 37.037 1.90 0.00 33.56 2.15
1721 1741 5.829924 CACAGAGGGGCTTTAATTCATATGT 59.170 40.000 1.90 0.00 0.00 2.29
1723 1743 4.829492 GCACAGAGGGGCTTTAATTCATAT 59.171 41.667 0.00 0.00 0.00 1.78
1724 1744 4.079787 AGCACAGAGGGGCTTTAATTCATA 60.080 41.667 0.00 0.00 36.92 2.15
1726 1746 2.041620 AGCACAGAGGGGCTTTAATTCA 59.958 45.455 0.00 0.00 36.92 2.57
1730 1750 2.026262 CCTTAGCACAGAGGGGCTTTAA 60.026 50.000 0.00 0.00 41.41 1.52
1741 1761 0.976641 TGGTGGAGACCTTAGCACAG 59.023 55.000 0.00 0.00 43.58 3.66
1772 1792 2.343758 GGCAACGACAGAGCCTGA 59.656 61.111 8.91 0.00 44.92 3.86
1784 1804 3.004524 CCTAGTAGTGGTATCTCGGCAAC 59.995 52.174 0.00 0.00 0.00 4.17
1785 1805 3.220110 CCTAGTAGTGGTATCTCGGCAA 58.780 50.000 0.00 0.00 0.00 4.52
1786 1806 2.488528 CCCTAGTAGTGGTATCTCGGCA 60.489 54.545 0.00 0.00 0.00 5.69
1787 1807 2.161030 CCCTAGTAGTGGTATCTCGGC 58.839 57.143 0.00 0.00 0.00 5.54
1788 1808 3.784511 TCCCTAGTAGTGGTATCTCGG 57.215 52.381 0.00 0.00 0.00 4.63
1789 1809 5.507650 GCTTTTCCCTAGTAGTGGTATCTCG 60.508 48.000 0.00 0.00 0.00 4.04
1790 1810 5.221481 GGCTTTTCCCTAGTAGTGGTATCTC 60.221 48.000 0.00 0.00 0.00 2.75
1791 1811 4.654724 GGCTTTTCCCTAGTAGTGGTATCT 59.345 45.833 0.00 0.00 0.00 1.98
1792 1812 4.654724 AGGCTTTTCCCTAGTAGTGGTATC 59.345 45.833 0.00 0.00 32.11 2.24
1793 1813 4.632292 AGGCTTTTCCCTAGTAGTGGTAT 58.368 43.478 0.00 0.00 32.11 2.73
1904 1924 4.530857 GCAGTAGCGTGGGCGGAT 62.531 66.667 0.00 0.00 46.35 4.18
1938 1958 3.068691 TCCTCCGGGAAGTCGCTG 61.069 66.667 0.00 0.00 38.93 5.18
2172 2887 3.065371 GCGGATTAGTTTCAAGTGGATGG 59.935 47.826 0.00 0.00 0.00 3.51
2173 2888 3.242413 CGCGGATTAGTTTCAAGTGGATG 60.242 47.826 0.00 0.00 0.00 3.51
2174 2889 2.936498 CGCGGATTAGTTTCAAGTGGAT 59.064 45.455 0.00 0.00 0.00 3.41
2175 2890 2.343101 CGCGGATTAGTTTCAAGTGGA 58.657 47.619 0.00 0.00 0.00 4.02
2176 2891 1.396996 CCGCGGATTAGTTTCAAGTGG 59.603 52.381 24.07 0.00 0.00 4.00
2177 2892 2.073816 ACCGCGGATTAGTTTCAAGTG 58.926 47.619 35.90 0.00 0.00 3.16
2178 2893 2.467566 ACCGCGGATTAGTTTCAAGT 57.532 45.000 35.90 0.00 0.00 3.16
2179 2894 3.000727 AGAACCGCGGATTAGTTTCAAG 58.999 45.455 35.90 0.00 0.00 3.02
2180 2895 3.048337 AGAACCGCGGATTAGTTTCAA 57.952 42.857 35.90 0.00 0.00 2.69
2181 2896 2.754946 AGAACCGCGGATTAGTTTCA 57.245 45.000 35.90 0.00 0.00 2.69
2182 2897 3.434299 TGAAAGAACCGCGGATTAGTTTC 59.566 43.478 35.90 27.63 0.00 2.78
2183 2898 3.187842 GTGAAAGAACCGCGGATTAGTTT 59.812 43.478 35.90 21.75 0.00 2.66
2184 2899 2.740447 GTGAAAGAACCGCGGATTAGTT 59.260 45.455 35.90 16.07 0.00 2.24
2649 3658 5.731406 GCAGTTATGAACATACAGCCATGTG 60.731 44.000 0.00 0.00 40.79 3.21
2652 3661 4.525996 TGCAGTTATGAACATACAGCCAT 58.474 39.130 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.