Multiple sequence alignment - TraesCS1A01G435000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G435000 chr1A 100.000 3936 0 0 1 3936 585629073 585625138 0.000000e+00 7269.0
1 TraesCS1A01G435000 chr1A 83.642 324 20 4 3556 3863 517385330 517385024 1.390000e-69 274.0
2 TraesCS1A01G435000 chr1A 98.198 111 1 1 638 747 385269106 385269216 4.010000e-45 193.0
3 TraesCS1A01G435000 chr1A 99.065 107 1 0 644 750 558592180 558592074 4.010000e-45 193.0
4 TraesCS1A01G435000 chr1A 76.630 184 25 15 133 309 472549752 472549924 7.010000e-13 86.1
5 TraesCS1A01G435000 chr1A 100.000 29 0 0 2135 2163 571578932 571578904 2.000000e-03 54.7
6 TraesCS1A01G435000 chr1D 91.949 1416 89 7 2161 3553 487566830 487565417 0.000000e+00 1960.0
7 TraesCS1A01G435000 chr1D 90.453 838 47 19 748 1564 487568016 487567191 0.000000e+00 1074.0
8 TraesCS1A01G435000 chr1D 91.489 376 22 7 1635 2006 487567192 487566823 3.510000e-140 508.0
9 TraesCS1A01G435000 chr1D 90.149 335 16 2 1 318 487569295 487568961 1.690000e-113 420.0
10 TraesCS1A01G435000 chr1D 95.000 260 7 2 387 643 487568264 487568008 1.700000e-108 403.0
11 TraesCS1A01G435000 chr1D 87.313 134 14 3 2010 2142 464401737 464401606 2.450000e-32 150.0
12 TraesCS1A01G435000 chr1D 94.595 74 4 0 3863 3936 254053559 254053486 8.940000e-22 115.0
13 TraesCS1A01G435000 chr1D 100.000 31 0 0 3554 3584 479583492 479583462 1.530000e-04 58.4
14 TraesCS1A01G435000 chr1B 94.083 1183 63 3 2166 3344 679031680 679030501 0.000000e+00 1790.0
15 TraesCS1A01G435000 chr1B 86.996 1115 79 36 748 1827 679033326 679032243 0.000000e+00 1195.0
16 TraesCS1A01G435000 chr1B 88.012 342 18 7 1 320 679034447 679034107 2.220000e-102 383.0
17 TraesCS1A01G435000 chr1B 90.076 262 15 5 390 643 679033576 679033318 2.930000e-86 329.0
18 TraesCS1A01G435000 chr1B 100.000 104 0 0 644 747 583853426 583853529 4.010000e-45 193.0
19 TraesCS1A01G435000 chr1B 85.806 155 15 6 137 285 539124833 539124986 1.460000e-34 158.0
20 TraesCS1A01G435000 chr1B 92.632 95 7 0 1912 2006 679031800 679031706 1.910000e-28 137.0
21 TraesCS1A01G435000 chr3A 91.167 317 25 3 3556 3869 707912482 707912798 1.010000e-115 427.0
22 TraesCS1A01G435000 chr3A 89.157 332 26 8 3542 3869 1312709 1312384 4.740000e-109 405.0
23 TraesCS1A01G435000 chr3A 98.182 110 2 0 645 754 623224673 623224782 4.010000e-45 193.0
24 TraesCS1A01G435000 chr3A 100.000 28 0 0 2135 2162 563387734 563387761 7.000000e-03 52.8
25 TraesCS1A01G435000 chr7B 89.157 332 18 6 3556 3869 291516879 291516548 7.920000e-107 398.0
26 TraesCS1A01G435000 chr7B 87.048 332 25 6 3556 3869 291514262 291513931 3.740000e-95 359.0
27 TraesCS1A01G435000 chr7B 95.652 115 3 2 641 755 736300148 736300260 2.420000e-42 183.0
28 TraesCS1A01G435000 chr7A 86.726 339 21 6 3555 3869 701621559 701621897 4.840000e-94 355.0
29 TraesCS1A01G435000 chr7A 79.456 331 50 16 3556 3869 127459868 127460197 6.620000e-53 219.0
30 TraesCS1A01G435000 chr7A 92.623 122 9 0 3561 3682 730748396 730748275 4.040000e-40 176.0
31 TraesCS1A01G435000 chr7A 98.507 67 1 0 3870 3936 239034044 239034110 6.910000e-23 119.0
32 TraesCS1A01G435000 chr7A 97.015 67 2 0 3870 3936 98731853 98731919 3.210000e-21 113.0
33 TraesCS1A01G435000 chr7A 97.015 67 2 0 3870 3936 702613875 702613941 3.210000e-21 113.0
34 TraesCS1A01G435000 chr7A 90.123 81 7 1 3857 3936 444983868 444983948 1.930000e-18 104.0
35 TraesCS1A01G435000 chr4A 86.405 331 26 6 3558 3869 387021761 387021431 1.050000e-90 344.0
36 TraesCS1A01G435000 chr4A 92.593 189 13 1 3676 3863 387052497 387052309 1.800000e-68 270.0
37 TraesCS1A01G435000 chr4A 91.534 189 15 1 3676 3863 387063714 387063526 3.900000e-65 259.0
38 TraesCS1A01G435000 chr4A 100.000 105 0 0 644 748 691126907 691127011 1.120000e-45 195.0
39 TraesCS1A01G435000 chr3B 96.032 126 2 3 632 756 660994592 660994469 6.670000e-48 202.0
40 TraesCS1A01G435000 chr3B 80.142 141 20 7 2010 2145 581906173 581906310 9.000000e-17 99.0
41 TraesCS1A01G435000 chr3B 94.118 34 2 0 2135 2168 555269601 555269568 7.000000e-03 52.8
42 TraesCS1A01G435000 chr5A 100.000 105 0 0 644 748 531614580 531614684 1.120000e-45 195.0
43 TraesCS1A01G435000 chr5A 78.804 184 19 11 138 309 489844771 489844946 5.380000e-19 106.0
44 TraesCS1A01G435000 chrUn 100.000 104 0 0 645 748 8125637 8125740 4.010000e-45 193.0
45 TraesCS1A01G435000 chrUn 85.294 170 24 1 137 305 92809454 92809623 1.450000e-39 174.0
46 TraesCS1A01G435000 chr2A 94.595 74 3 1 3863 3936 753599450 753599378 3.210000e-21 113.0
47 TraesCS1A01G435000 chr2A 97.059 34 0 1 2136 2168 721677325 721677358 5.490000e-04 56.5
48 TraesCS1A01G435000 chr7D 93.243 74 5 0 3863 3936 209368966 209368893 4.160000e-20 110.0
49 TraesCS1A01G435000 chr7D 94.872 39 1 1 2130 2168 486062752 486062715 4.250000e-05 60.2
50 TraesCS1A01G435000 chr6A 93.243 74 4 1 3863 3936 469619611 469619539 1.500000e-19 108.0
51 TraesCS1A01G435000 chr2D 82.787 122 15 4 2003 2118 209024696 209024575 1.930000e-18 104.0
52 TraesCS1A01G435000 chr2D 94.737 38 1 1 2135 2171 8983594 8983631 1.530000e-04 58.4
53 TraesCS1A01G435000 chr2B 83.784 111 17 1 2006 2116 446108875 446108766 1.930000e-18 104.0
54 TraesCS1A01G435000 chr4D 94.030 67 2 2 3854 3918 35722285 35722351 2.500000e-17 100.0
55 TraesCS1A01G435000 chr5D 77.540 187 20 12 138 309 387099340 387099519 4.190000e-15 93.5
56 TraesCS1A01G435000 chr6D 92.105 38 1 2 2124 2161 78749748 78749783 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G435000 chr1A 585625138 585629073 3935 True 7269.0 7269 100.0000 1 3936 1 chr1A.!!$R4 3935
1 TraesCS1A01G435000 chr1D 487565417 487569295 3878 True 873.0 1960 91.8080 1 3553 5 chr1D.!!$R4 3552
2 TraesCS1A01G435000 chr1B 679030501 679034447 3946 True 766.8 1790 90.3598 1 3344 5 chr1B.!!$R1 3343
3 TraesCS1A01G435000 chr7B 291513931 291516879 2948 True 378.5 398 88.1025 3556 3869 2 chr7B.!!$R1 313

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
646 1415 0.457851 CAGGCTAGTGAACGGAGGAG 59.542 60.0 0.00 0.00 0.00 3.69 F
1283 2080 0.731855 GAGGCGAGGTACACGTTCAC 60.732 60.0 11.94 0.00 45.83 3.18 F
1538 2345 0.174845 CGATGTATGTCACCGGTGGT 59.825 55.0 33.40 21.37 35.62 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1454 2251 0.033366 CATGCATGGATCCCGACGTA 59.967 55.0 19.4 0.0 0.0 3.57 R
2136 3327 0.037734 TGTGGCTAGGTCTCAGTCGA 59.962 55.0 0.0 0.0 0.0 4.20 R
3445 4686 0.955428 TCGACTTGGTTGAGCATGGC 60.955 55.0 0.0 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.741401 CCTTTCGGCGTCTGCATCA 60.741 57.895 6.85 0.00 45.35 3.07
197 200 5.753921 CACGTAGTCACTTTTCTCCTTCTTT 59.246 40.000 0.00 0.00 41.61 2.52
198 201 6.921857 CACGTAGTCACTTTTCTCCTTCTTTA 59.078 38.462 0.00 0.00 41.61 1.85
218 238 1.360393 TTCCCTGTTGGCCAGACCTT 61.360 55.000 5.11 0.00 44.49 3.50
242 262 1.609320 GGAGAAGAAACAAGCTCGCCT 60.609 52.381 0.00 0.00 0.00 5.52
306 327 4.080299 GGCCCCATTATCTATCTTAGGGTG 60.080 50.000 0.00 0.00 35.62 4.61
351 1052 2.092968 CACAAATCCTGCTAGTAGGCCA 60.093 50.000 21.26 6.37 37.76 5.36
368 1069 1.543802 GCCATGAACCAAAATCGGTCA 59.456 47.619 0.00 0.00 38.76 4.02
406 1164 9.697990 AGAGATCATGTATGAATATAGCTGAGA 57.302 33.333 0.00 0.00 40.69 3.27
560 1321 4.835678 TGACATGTACGTGTAGGAGAGTA 58.164 43.478 20.49 0.00 31.16 2.59
561 1322 4.874396 TGACATGTACGTGTAGGAGAGTAG 59.126 45.833 20.49 0.00 31.16 2.57
562 1323 4.841422 ACATGTACGTGTAGGAGAGTAGT 58.159 43.478 19.15 0.00 0.00 2.73
582 1343 0.738389 ACGACTTTGCACCAACCAAG 59.262 50.000 0.00 0.00 0.00 3.61
607 1376 1.403647 CGTTCGTGCCAGGTCTGATAA 60.404 52.381 0.00 0.00 0.00 1.75
641 1410 1.002087 ACTTTCCAGGCTAGTGAACGG 59.998 52.381 0.00 0.00 0.00 4.44
642 1411 1.275291 CTTTCCAGGCTAGTGAACGGA 59.725 52.381 0.00 0.00 0.00 4.69
643 1412 0.895530 TTCCAGGCTAGTGAACGGAG 59.104 55.000 0.00 0.00 0.00 4.63
644 1413 0.970937 TCCAGGCTAGTGAACGGAGG 60.971 60.000 0.00 0.00 0.00 4.30
645 1414 0.970937 CCAGGCTAGTGAACGGAGGA 60.971 60.000 0.00 0.00 0.00 3.71
646 1415 0.457851 CAGGCTAGTGAACGGAGGAG 59.542 60.000 0.00 0.00 0.00 3.69
647 1416 1.142097 GGCTAGTGAACGGAGGAGC 59.858 63.158 0.00 0.00 0.00 4.70
648 1417 1.142097 GCTAGTGAACGGAGGAGCC 59.858 63.158 0.00 0.00 0.00 4.70
657 1426 4.565850 GGAGGAGCCGGATCCCCT 62.566 72.222 34.60 18.43 40.53 4.79
658 1427 3.237741 GAGGAGCCGGATCCCCTG 61.238 72.222 34.60 0.00 40.53 4.45
659 1428 3.758133 GAGGAGCCGGATCCCCTGA 62.758 68.421 34.60 0.00 40.53 3.86
660 1429 3.551407 GGAGCCGGATCCCCTGAC 61.551 72.222 28.96 0.78 32.79 3.51
661 1430 3.917760 GAGCCGGATCCCCTGACG 61.918 72.222 9.02 0.00 0.00 4.35
662 1431 4.779733 AGCCGGATCCCCTGACGT 62.780 66.667 5.05 0.00 0.00 4.34
663 1432 2.836360 GCCGGATCCCCTGACGTA 60.836 66.667 5.05 0.00 0.00 3.57
664 1433 3.126528 CCGGATCCCCTGACGTAC 58.873 66.667 6.06 0.00 0.00 3.67
665 1434 2.719979 CGGATCCCCTGACGTACG 59.280 66.667 15.01 15.01 0.00 3.67
666 1435 2.842256 CGGATCCCCTGACGTACGG 61.842 68.421 21.06 1.19 0.00 4.02
667 1436 2.416260 GATCCCCTGACGTACGGC 59.584 66.667 21.06 18.72 0.00 5.68
668 1437 3.148031 GATCCCCTGACGTACGGCC 62.148 68.421 20.48 10.81 0.00 6.13
669 1438 3.968837 ATCCCCTGACGTACGGCCA 62.969 63.158 20.48 14.99 0.00 5.36
670 1439 4.446413 CCCCTGACGTACGGCCAC 62.446 72.222 20.48 7.80 0.00 5.01
671 1440 4.446413 CCCTGACGTACGGCCACC 62.446 72.222 20.48 2.90 0.00 4.61
672 1441 3.379445 CCTGACGTACGGCCACCT 61.379 66.667 20.48 0.00 0.00 4.00
673 1442 2.126071 CTGACGTACGGCCACCTG 60.126 66.667 20.48 0.00 0.00 4.00
674 1443 2.598099 TGACGTACGGCCACCTGA 60.598 61.111 20.48 0.00 0.00 3.86
675 1444 2.126189 GACGTACGGCCACCTGAC 60.126 66.667 21.06 0.00 0.00 3.51
676 1445 3.958822 GACGTACGGCCACCTGACG 62.959 68.421 21.06 6.95 36.05 4.35
677 1446 4.047059 CGTACGGCCACCTGACGT 62.047 66.667 7.57 0.00 43.88 4.34
678 1447 2.341176 GTACGGCCACCTGACGTT 59.659 61.111 2.24 0.00 41.53 3.99
679 1448 2.025418 GTACGGCCACCTGACGTTG 61.025 63.158 2.24 0.00 41.53 4.10
680 1449 3.229156 TACGGCCACCTGACGTTGG 62.229 63.158 2.24 6.95 41.53 3.77
684 1453 4.263572 CCACCTGACGTTGGGCCA 62.264 66.667 0.00 0.00 0.00 5.36
685 1454 2.978010 CACCTGACGTTGGGCCAC 60.978 66.667 5.23 0.00 0.00 5.01
686 1455 3.168528 ACCTGACGTTGGGCCACT 61.169 61.111 5.23 0.00 0.00 4.00
687 1456 2.669569 CCTGACGTTGGGCCACTG 60.670 66.667 5.23 3.70 0.00 3.66
688 1457 2.425592 CTGACGTTGGGCCACTGA 59.574 61.111 5.23 0.00 0.00 3.41
689 1458 1.961277 CTGACGTTGGGCCACTGAC 60.961 63.158 5.23 0.00 0.00 3.51
690 1459 3.041940 GACGTTGGGCCACTGACG 61.042 66.667 23.66 23.66 41.00 4.35
712 1481 4.368543 GGTCCGGGTCCACACGTC 62.369 72.222 0.00 0.00 42.08 4.34
713 1482 3.608662 GTCCGGGTCCACACGTCA 61.609 66.667 0.00 0.00 42.08 4.35
714 1483 3.299977 TCCGGGTCCACACGTCAG 61.300 66.667 0.00 0.00 42.08 3.51
717 1486 3.986006 GGGTCCACACGTCAGCGA 61.986 66.667 0.00 0.00 42.00 4.93
718 1487 2.430921 GGTCCACACGTCAGCGAG 60.431 66.667 0.00 0.00 42.00 5.03
719 1488 2.335369 GTCCACACGTCAGCGAGT 59.665 61.111 0.00 0.00 42.28 4.18
732 1501 4.746951 CGAGTGCGCCGTACGTCA 62.747 66.667 15.21 6.28 46.11 4.35
733 1502 2.874780 GAGTGCGCCGTACGTCAG 60.875 66.667 15.21 6.03 46.11 3.51
734 1503 3.318539 GAGTGCGCCGTACGTCAGA 62.319 63.158 15.21 0.00 46.11 3.27
735 1504 2.874780 GTGCGCCGTACGTCAGAG 60.875 66.667 15.21 1.85 46.11 3.35
736 1505 4.111016 TGCGCCGTACGTCAGAGG 62.111 66.667 15.21 0.00 46.11 3.69
737 1506 3.807538 GCGCCGTACGTCAGAGGA 61.808 66.667 15.21 0.00 46.11 3.71
738 1507 2.403987 CGCCGTACGTCAGAGGAG 59.596 66.667 15.21 0.00 36.87 3.69
739 1508 2.102553 GCCGTACGTCAGAGGAGC 59.897 66.667 15.21 3.74 0.00 4.70
740 1509 2.408241 GCCGTACGTCAGAGGAGCT 61.408 63.158 15.21 0.00 0.00 4.09
741 1510 1.429825 CCGTACGTCAGAGGAGCTG 59.570 63.158 15.21 0.00 46.31 4.24
742 1511 1.226435 CGTACGTCAGAGGAGCTGC 60.226 63.158 7.22 0.00 44.52 5.25
743 1512 1.226435 GTACGTCAGAGGAGCTGCG 60.226 63.158 0.00 0.00 44.52 5.18
744 1513 2.986413 ACGTCAGAGGAGCTGCGT 60.986 61.111 0.00 0.00 45.57 5.24
745 1514 1.645704 TACGTCAGAGGAGCTGCGTC 61.646 60.000 14.59 0.00 46.59 5.19
746 1515 2.183046 GTCAGAGGAGCTGCGTCC 59.817 66.667 0.00 9.30 44.52 4.79
747 1516 3.443925 TCAGAGGAGCTGCGTCCG 61.444 66.667 0.00 0.00 44.52 4.79
748 1517 3.753434 CAGAGGAGCTGCGTCCGT 61.753 66.667 0.00 0.00 42.05 4.69
749 1518 3.753434 AGAGGAGCTGCGTCCGTG 61.753 66.667 0.00 0.00 42.05 4.94
750 1519 3.749064 GAGGAGCTGCGTCCGTGA 61.749 66.667 0.00 0.00 42.05 4.35
751 1520 3.282745 GAGGAGCTGCGTCCGTGAA 62.283 63.158 0.00 0.00 42.05 3.18
752 1521 2.125512 GGAGCTGCGTCCGTGAAT 60.126 61.111 0.00 0.00 0.00 2.57
753 1522 2.456119 GGAGCTGCGTCCGTGAATG 61.456 63.158 0.00 0.00 0.00 2.67
781 1550 4.828829 TCCATTTTCCTACCGTTCTTCTC 58.171 43.478 0.00 0.00 0.00 2.87
980 1757 3.055094 TGGAATCTTAGTGAGTTGGAGGC 60.055 47.826 0.00 0.00 0.00 4.70
984 1761 3.239449 TCTTAGTGAGTTGGAGGCTGAA 58.761 45.455 0.00 0.00 0.00 3.02
1039 1819 2.663196 CAAGGGAGGTGGTCGTCC 59.337 66.667 0.00 0.00 44.92 4.79
1141 1921 4.021192 CCATCACCAAAGCAAACAAGGTAT 60.021 41.667 0.00 0.00 0.00 2.73
1143 1923 3.059166 CACCAAAGCAAACAAGGTATGC 58.941 45.455 0.00 0.00 40.34 3.14
1219 2004 1.302832 GGCTTCTGGACACAGGTGG 60.303 63.158 4.24 0.00 44.99 4.61
1282 2079 1.582968 GAGGCGAGGTACACGTTCA 59.417 57.895 11.94 0.00 45.83 3.18
1283 2080 0.731855 GAGGCGAGGTACACGTTCAC 60.732 60.000 11.94 0.00 45.83 3.18
1293 2090 4.974989 ACGTTCACCCGGTTCGCC 62.975 66.667 0.00 0.00 0.00 5.54
1326 2123 1.459455 CGCTGATGGACGAGAGGGAT 61.459 60.000 0.00 0.00 0.00 3.85
1332 2129 1.753463 GGACGAGAGGGATGTCCGT 60.753 63.158 0.00 0.00 42.42 4.69
1434 2231 2.441901 CTCCTCCTCTGCGCCTCT 60.442 66.667 4.18 0.00 0.00 3.69
1450 2247 2.444421 CCTCTCCAAGGTACGTACTGT 58.556 52.381 24.07 10.16 40.67 3.55
1451 2248 3.614092 CCTCTCCAAGGTACGTACTGTA 58.386 50.000 24.07 3.09 40.67 2.74
1460 2257 3.554670 GTACGTACTGTACCTACGTCG 57.445 52.381 22.28 9.08 45.43 5.12
1461 2258 1.359848 ACGTACTGTACCTACGTCGG 58.640 55.000 16.24 4.24 45.43 4.79
1499 2304 0.955428 GCACATCACACATCCACCGT 60.955 55.000 0.00 0.00 0.00 4.83
1502 2307 1.447838 ATCACACATCCACCGTCGC 60.448 57.895 0.00 0.00 0.00 5.19
1504 2309 4.388499 ACACATCCACCGTCGCCC 62.388 66.667 0.00 0.00 0.00 6.13
1515 2320 4.609247 GTCGCCCGTCGGAGATCG 62.609 72.222 14.39 10.53 40.42 3.69
1516 2321 4.843719 TCGCCCGTCGGAGATCGA 62.844 66.667 14.39 12.70 46.77 3.59
1524 2331 3.433319 CGGAGATCGACCCGATGT 58.567 61.111 15.16 2.49 47.00 3.06
1530 2337 2.552743 GAGATCGACCCGATGTATGTCA 59.447 50.000 6.58 0.00 47.00 3.58
1538 2345 0.174845 CGATGTATGTCACCGGTGGT 59.825 55.000 33.40 21.37 35.62 4.16
1604 2414 4.003519 GCACGGTAACTTGTGATTCATC 57.996 45.455 0.00 0.00 38.30 2.92
1605 2415 3.181510 GCACGGTAACTTGTGATTCATCC 60.182 47.826 0.00 0.00 38.30 3.51
1606 2416 4.000325 CACGGTAACTTGTGATTCATCCA 59.000 43.478 0.00 0.00 38.36 3.41
1607 2417 4.093408 CACGGTAACTTGTGATTCATCCAG 59.907 45.833 0.00 0.00 38.36 3.86
1631 2441 7.227512 CAGATCTAGCCTTTTCGGATTTATTGT 59.772 37.037 0.00 0.00 30.90 2.71
1632 2442 6.677781 TCTAGCCTTTTCGGATTTATTGTG 57.322 37.500 0.00 0.00 30.90 3.33
1731 2541 0.257328 TCCCTCATGGCGCCAAATTA 59.743 50.000 36.33 17.72 0.00 1.40
1744 2554 2.686558 CAAATTATGGACATCGCCGG 57.313 50.000 0.00 0.00 0.00 6.13
1847 2657 9.887406 CTACCATACAAAAACGTCTTACATTTT 57.113 29.630 0.00 0.00 0.00 1.82
1854 2664 7.641020 ACAAAAACGTCTTACATTTTAAGTCGG 59.359 33.333 11.80 0.38 39.25 4.79
1856 2666 6.457851 AACGTCTTACATTTTAAGTCGGAC 57.542 37.500 11.80 0.00 39.25 4.79
1860 2670 6.346040 CGTCTTACATTTTAAGTCGGACGTTT 60.346 38.462 1.12 0.00 38.28 3.60
1896 3084 9.238368 AGCTAGTAGTATATCCATTTGAGTCTC 57.762 37.037 0.00 0.00 0.00 3.36
1908 3096 5.069251 CCATTTGAGTCTCCCTACGTCTAAT 59.931 44.000 0.00 0.00 0.00 1.73
1909 3097 6.407074 CCATTTGAGTCTCCCTACGTCTAATT 60.407 42.308 0.00 0.00 0.00 1.40
1923 3111 7.281774 CCTACGTCTAATTAAGTCCACTGAGTA 59.718 40.741 0.00 0.00 0.00 2.59
1956 3144 6.818644 TGTCTAAATCGATTCTAAAAGCTGCT 59.181 34.615 11.83 0.00 0.00 4.24
2020 3211 9.528018 TCCTTTAAGAAACAATTTTGCTAAGTG 57.472 29.630 0.00 0.00 0.00 3.16
2021 3212 9.313118 CCTTTAAGAAACAATTTTGCTAAGTGT 57.687 29.630 0.00 0.49 0.00 3.55
2023 3214 9.862371 TTTAAGAAACAATTTTGCTAAGTGTCA 57.138 25.926 5.87 0.00 0.00 3.58
2024 3215 7.992180 AAGAAACAATTTTGCTAAGTGTCAG 57.008 32.000 5.87 0.00 0.00 3.51
2025 3216 7.100458 AGAAACAATTTTGCTAAGTGTCAGT 57.900 32.000 5.87 0.00 0.00 3.41
2026 3217 7.196331 AGAAACAATTTTGCTAAGTGTCAGTC 58.804 34.615 5.87 5.05 0.00 3.51
2027 3218 5.095691 ACAATTTTGCTAAGTGTCAGTCG 57.904 39.130 0.49 0.00 0.00 4.18
2028 3219 4.814234 ACAATTTTGCTAAGTGTCAGTCGA 59.186 37.500 0.49 0.00 0.00 4.20
2029 3220 5.470098 ACAATTTTGCTAAGTGTCAGTCGAT 59.530 36.000 0.00 0.00 0.00 3.59
2030 3221 6.017109 ACAATTTTGCTAAGTGTCAGTCGATT 60.017 34.615 0.00 0.00 0.00 3.34
2031 3222 4.990543 TTTGCTAAGTGTCAGTCGATTG 57.009 40.909 0.68 0.68 0.00 2.67
2032 3223 3.660501 TGCTAAGTGTCAGTCGATTGT 57.339 42.857 7.87 0.00 0.00 2.71
2033 3224 3.317150 TGCTAAGTGTCAGTCGATTGTG 58.683 45.455 7.87 0.00 0.00 3.33
2034 3225 3.005367 TGCTAAGTGTCAGTCGATTGTGA 59.995 43.478 7.87 0.00 0.00 3.58
2035 3226 3.365220 GCTAAGTGTCAGTCGATTGTGAC 59.635 47.826 15.09 15.09 42.93 3.67
2037 3228 3.735237 AGTGTCAGTCGATTGTGACTT 57.265 42.857 19.92 10.22 46.85 3.01
2038 3229 3.643763 AGTGTCAGTCGATTGTGACTTC 58.356 45.455 19.92 14.70 46.85 3.01
2039 3230 2.405357 GTGTCAGTCGATTGTGACTTCG 59.595 50.000 19.92 2.80 46.85 3.79
2040 3231 2.034179 TGTCAGTCGATTGTGACTTCGT 59.966 45.455 19.92 0.00 46.85 3.85
2041 3232 3.050619 GTCAGTCGATTGTGACTTCGTT 58.949 45.455 7.87 0.00 46.85 3.85
2042 3233 4.224433 GTCAGTCGATTGTGACTTCGTTA 58.776 43.478 7.87 0.00 46.85 3.18
2043 3234 4.857588 GTCAGTCGATTGTGACTTCGTTAT 59.142 41.667 7.87 0.00 46.85 1.89
2044 3235 4.857037 TCAGTCGATTGTGACTTCGTTATG 59.143 41.667 7.87 6.34 46.85 1.90
2045 3236 4.621460 CAGTCGATTGTGACTTCGTTATGT 59.379 41.667 0.00 0.00 46.85 2.29
2046 3237 4.857588 AGTCGATTGTGACTTCGTTATGTC 59.142 41.667 8.01 0.00 46.85 3.06
2047 3238 4.857588 GTCGATTGTGACTTCGTTATGTCT 59.142 41.667 8.01 0.00 36.74 3.41
2048 3239 5.003590 GTCGATTGTGACTTCGTTATGTCTC 59.996 44.000 8.01 0.00 36.74 3.36
2049 3240 4.857037 CGATTGTGACTTCGTTATGTCTCA 59.143 41.667 0.00 0.00 35.70 3.27
2050 3241 5.003872 CGATTGTGACTTCGTTATGTCTCAG 59.996 44.000 0.00 0.00 37.77 3.35
2051 3242 4.848562 TGTGACTTCGTTATGTCTCAGT 57.151 40.909 0.00 0.00 33.57 3.41
2052 3243 4.795268 TGTGACTTCGTTATGTCTCAGTC 58.205 43.478 0.00 0.00 33.57 3.51
2053 3244 4.277423 TGTGACTTCGTTATGTCTCAGTCA 59.723 41.667 0.00 0.00 38.61 3.41
2054 3245 5.220381 GTGACTTCGTTATGTCTCAGTCAA 58.780 41.667 1.51 0.00 41.65 3.18
2055 3246 5.864474 GTGACTTCGTTATGTCTCAGTCAAT 59.136 40.000 1.51 0.00 41.65 2.57
2056 3247 5.863935 TGACTTCGTTATGTCTCAGTCAATG 59.136 40.000 0.00 0.00 38.12 2.82
2057 3248 4.627467 ACTTCGTTATGTCTCAGTCAATGC 59.373 41.667 0.00 0.00 0.00 3.56
2058 3249 4.456280 TCGTTATGTCTCAGTCAATGCT 57.544 40.909 0.00 0.00 0.00 3.79
2059 3250 4.176271 TCGTTATGTCTCAGTCAATGCTG 58.824 43.478 0.00 0.00 37.81 4.41
2060 3251 3.928992 CGTTATGTCTCAGTCAATGCTGT 59.071 43.478 5.00 0.00 37.70 4.40
2061 3252 4.032217 CGTTATGTCTCAGTCAATGCTGTC 59.968 45.833 5.00 0.37 37.70 3.51
2062 3253 3.977134 ATGTCTCAGTCAATGCTGTCT 57.023 42.857 5.00 0.00 37.70 3.41
2063 3254 3.758755 TGTCTCAGTCAATGCTGTCTT 57.241 42.857 5.00 0.00 37.70 3.01
2064 3255 3.657634 TGTCTCAGTCAATGCTGTCTTC 58.342 45.455 5.00 0.00 37.70 2.87
2065 3256 2.999355 GTCTCAGTCAATGCTGTCTTCC 59.001 50.000 5.00 0.00 37.70 3.46
2066 3257 2.902486 TCTCAGTCAATGCTGTCTTCCT 59.098 45.455 5.00 0.00 37.70 3.36
2067 3258 3.326006 TCTCAGTCAATGCTGTCTTCCTT 59.674 43.478 5.00 0.00 37.70 3.36
2068 3259 4.070716 CTCAGTCAATGCTGTCTTCCTTT 58.929 43.478 5.00 0.00 37.70 3.11
2069 3260 3.817084 TCAGTCAATGCTGTCTTCCTTTG 59.183 43.478 5.00 0.00 37.70 2.77
2070 3261 3.817084 CAGTCAATGCTGTCTTCCTTTGA 59.183 43.478 0.00 0.00 0.00 2.69
2071 3262 4.458295 CAGTCAATGCTGTCTTCCTTTGAT 59.542 41.667 0.00 0.00 30.93 2.57
2072 3263 5.048224 CAGTCAATGCTGTCTTCCTTTGATT 60.048 40.000 0.00 0.00 30.93 2.57
2073 3264 5.537674 AGTCAATGCTGTCTTCCTTTGATTT 59.462 36.000 0.00 0.00 30.93 2.17
2074 3265 6.041296 AGTCAATGCTGTCTTCCTTTGATTTT 59.959 34.615 0.00 0.00 30.93 1.82
2075 3266 6.145048 GTCAATGCTGTCTTCCTTTGATTTTG 59.855 38.462 0.00 0.00 30.93 2.44
2076 3267 3.981211 TGCTGTCTTCCTTTGATTTTGC 58.019 40.909 0.00 0.00 0.00 3.68
2077 3268 3.384146 TGCTGTCTTCCTTTGATTTTGCA 59.616 39.130 0.00 0.00 0.00 4.08
2078 3269 4.039488 TGCTGTCTTCCTTTGATTTTGCAT 59.961 37.500 0.00 0.00 0.00 3.96
2079 3270 4.387862 GCTGTCTTCCTTTGATTTTGCATG 59.612 41.667 0.00 0.00 0.00 4.06
2080 3271 4.885413 TGTCTTCCTTTGATTTTGCATGG 58.115 39.130 0.00 0.00 0.00 3.66
2081 3272 4.588106 TGTCTTCCTTTGATTTTGCATGGA 59.412 37.500 0.00 0.00 0.00 3.41
2082 3273 5.166398 GTCTTCCTTTGATTTTGCATGGAG 58.834 41.667 0.00 0.00 0.00 3.86
2083 3274 5.047802 GTCTTCCTTTGATTTTGCATGGAGA 60.048 40.000 0.00 0.00 0.00 3.71
2084 3275 5.718130 TCTTCCTTTGATTTTGCATGGAGAT 59.282 36.000 0.00 0.00 0.00 2.75
2085 3276 6.211986 TCTTCCTTTGATTTTGCATGGAGATT 59.788 34.615 0.00 0.00 0.00 2.40
2086 3277 6.363167 TCCTTTGATTTTGCATGGAGATTT 57.637 33.333 0.00 0.00 0.00 2.17
2087 3278 6.167685 TCCTTTGATTTTGCATGGAGATTTG 58.832 36.000 0.00 0.00 0.00 2.32
2088 3279 5.935789 CCTTTGATTTTGCATGGAGATTTGT 59.064 36.000 0.00 0.00 0.00 2.83
2089 3280 7.039152 TCCTTTGATTTTGCATGGAGATTTGTA 60.039 33.333 0.00 0.00 0.00 2.41
2090 3281 7.063780 CCTTTGATTTTGCATGGAGATTTGTAC 59.936 37.037 0.00 0.00 0.00 2.90
2091 3282 6.587206 TGATTTTGCATGGAGATTTGTACA 57.413 33.333 0.00 0.00 0.00 2.90
2092 3283 6.990798 TGATTTTGCATGGAGATTTGTACAA 58.009 32.000 3.59 3.59 0.00 2.41
2093 3284 7.440198 TGATTTTGCATGGAGATTTGTACAAA 58.560 30.769 22.58 22.58 34.46 2.83
2094 3285 7.930325 TGATTTTGCATGGAGATTTGTACAAAA 59.070 29.630 23.97 8.52 39.30 2.44
2095 3286 8.674263 ATTTTGCATGGAGATTTGTACAAAAA 57.326 26.923 23.97 10.06 38.70 1.94
2151 3342 4.634199 ACTATAGTCGACTGAGACCTAGC 58.366 47.826 28.12 0.00 41.83 3.42
2152 3343 2.328819 TAGTCGACTGAGACCTAGCC 57.671 55.000 28.12 0.00 41.83 3.93
2153 3344 0.328592 AGTCGACTGAGACCTAGCCA 59.671 55.000 19.30 0.00 41.83 4.75
2154 3345 0.452585 GTCGACTGAGACCTAGCCAC 59.547 60.000 8.70 0.00 35.22 5.01
2155 3346 0.037734 TCGACTGAGACCTAGCCACA 59.962 55.000 0.00 0.00 0.00 4.17
2156 3347 0.171455 CGACTGAGACCTAGCCACAC 59.829 60.000 0.00 0.00 0.00 3.82
2157 3348 0.533032 GACTGAGACCTAGCCACACC 59.467 60.000 0.00 0.00 0.00 4.16
2158 3349 0.905337 ACTGAGACCTAGCCACACCC 60.905 60.000 0.00 0.00 0.00 4.61
2235 3453 5.364157 ACACCAGATCTATTTACCCTGAGAC 59.636 44.000 0.00 0.00 0.00 3.36
2336 3558 6.751157 TGAACTCTCGGTGTATTTAAGTGAA 58.249 36.000 0.00 0.00 0.00 3.18
2337 3559 7.211573 TGAACTCTCGGTGTATTTAAGTGAAA 58.788 34.615 0.00 0.00 0.00 2.69
2338 3560 7.711772 TGAACTCTCGGTGTATTTAAGTGAAAA 59.288 33.333 0.00 0.00 0.00 2.29
2392 3614 1.479709 ACATCAACTCGGAGGAGGAG 58.520 55.000 10.23 0.00 44.93 3.69
2473 3695 0.555769 ACTTCCAAGCCTGGGTCAAA 59.444 50.000 0.35 0.00 43.71 2.69
2636 3858 2.046023 CCCTCGATGCTGTGCCAA 60.046 61.111 0.00 0.00 0.00 4.52
2715 3937 2.968574 AGTACATGGAGCGGAGAATGAT 59.031 45.455 0.00 0.00 0.00 2.45
2719 3941 3.208594 CATGGAGCGGAGAATGATGAAA 58.791 45.455 0.00 0.00 0.00 2.69
2781 4003 2.207924 ACTTTCCCCAGCTCGTCGT 61.208 57.895 0.00 0.00 0.00 4.34
2847 4069 3.068881 CCACAAGGGGCTCTCGAA 58.931 61.111 0.00 0.00 0.00 3.71
2854 4076 4.162690 GGGCTCTCGAACGGGCAT 62.163 66.667 0.00 0.00 0.00 4.40
2871 4093 1.383109 ATGATGGCACGGAGGAGGA 60.383 57.895 0.00 0.00 0.00 3.71
2875 4097 1.617947 ATGGCACGGAGGAGGAAGAC 61.618 60.000 0.00 0.00 0.00 3.01
2878 4100 1.816863 GCACGGAGGAGGAAGACACA 61.817 60.000 0.00 0.00 0.00 3.72
2902 4124 2.185350 CCTGCCGCTACTGAGGTG 59.815 66.667 0.00 0.00 35.46 4.00
3013 4235 6.210784 GTCCATGCCCAAGATATGTAGTACTA 59.789 42.308 0.00 0.00 0.00 1.82
3037 4259 6.164176 AGTAGGTTGTACATCTACAAGTTGC 58.836 40.000 25.56 8.68 42.40 4.17
3085 4316 9.589111 TTAGCACGTGAATAAACATATCTGTTA 57.411 29.630 22.23 0.00 44.83 2.41
3103 4334 7.946381 TCTGTTATGTATATCTCTAGCTGGG 57.054 40.000 0.00 0.00 0.00 4.45
3209 4440 2.160417 CACTTTCTTAAGCCGCTTCAGG 59.840 50.000 9.42 1.42 34.60 3.86
3273 4504 3.070576 GCTGCAACCCCATCCACC 61.071 66.667 0.00 0.00 0.00 4.61
3292 4523 3.584586 GCATCATCTGCGAGCTACT 57.415 52.632 0.00 0.00 41.97 2.57
3302 4533 1.032114 GCGAGCTACTGGGCCATTTT 61.032 55.000 6.72 0.00 0.00 1.82
3326 4557 2.989253 GAGTGGCCCCAAAACCCG 60.989 66.667 0.00 0.00 0.00 5.28
3336 4567 1.202348 CCCAAAACCCGAGAAATCAGC 59.798 52.381 0.00 0.00 0.00 4.26
3365 4596 3.318275 TGGTAGTGCTAAGAATAGGCTCG 59.682 47.826 0.00 0.00 0.00 5.03
3387 4618 4.475135 GGTGCTTCCCTCGGCTCC 62.475 72.222 0.00 0.00 35.47 4.70
3400 4631 2.660064 GGCTCCTCCCGTGTGTGAT 61.660 63.158 0.00 0.00 0.00 3.06
3402 4633 1.888436 GCTCCTCCCGTGTGTGATCA 61.888 60.000 0.00 0.00 0.00 2.92
3403 4634 0.826715 CTCCTCCCGTGTGTGATCAT 59.173 55.000 0.00 0.00 0.00 2.45
3407 4638 2.355108 CCTCCCGTGTGTGATCATCTTT 60.355 50.000 0.00 0.00 0.00 2.52
3416 4647 4.019411 TGTGTGATCATCTTTGCTTCCCTA 60.019 41.667 0.00 0.00 0.00 3.53
3417 4648 4.943705 GTGTGATCATCTTTGCTTCCCTAA 59.056 41.667 0.00 0.00 0.00 2.69
3432 4673 1.810030 CTAAGCTTCGACCGTGCCC 60.810 63.158 0.00 0.00 0.00 5.36
3470 4711 0.679505 CTCAACCAAGTCGACCCTGA 59.320 55.000 13.01 7.15 0.00 3.86
3472 4713 0.602905 CAACCAAGTCGACCCTGACC 60.603 60.000 13.01 0.00 39.77 4.02
3474 4715 2.261671 CAAGTCGACCCTGACCGG 59.738 66.667 13.01 0.00 39.77 5.28
3507 4748 3.266964 CACAAGGTGGCCATGTCG 58.733 61.111 9.72 0.38 32.85 4.35
3512 4753 1.779061 AAGGTGGCCATGTCGTCCTT 61.779 55.000 9.72 13.43 0.00 3.36
3519 4760 1.302431 CATGTCGTCCTTGGTGGCA 60.302 57.895 0.00 0.00 35.26 4.92
3538 4779 1.141858 CAGGGTAGGCCATCTTCTTCC 59.858 57.143 5.01 0.00 36.17 3.46
3584 4825 4.695455 TGCTAATCTTGTTACAAGGTCTGC 59.305 41.667 22.82 21.45 0.00 4.26
3590 4831 5.626142 TCTTGTTACAAGGTCTGCCAAATA 58.374 37.500 22.82 0.00 37.19 1.40
3598 4839 4.395959 AGGTCTGCCAAATATTGCATTG 57.604 40.909 1.31 0.00 36.79 2.82
3630 4871 5.641209 GCTCCATGCATTAGTTCAGTATAGG 59.359 44.000 0.00 0.00 42.31 2.57
3655 4912 1.242989 TTGTACGTGCATGCATTGGT 58.757 45.000 25.64 22.59 0.00 3.67
3714 4971 1.159713 CCTGTCACGTGTGTGTGCAT 61.160 55.000 16.51 0.00 46.49 3.96
3718 4975 1.165284 TCACGTGTGTGTGCATGCAT 61.165 50.000 25.64 1.21 46.49 3.96
3739 4996 5.581479 GCATAGGATTAGATCGAGTCGTAGA 59.419 44.000 13.12 0.00 0.00 2.59
3743 5000 6.231951 AGGATTAGATCGAGTCGTAGATGAA 58.768 40.000 13.12 1.53 40.67 2.57
3749 5006 4.713824 TCGAGTCGTAGATGAATTGGTT 57.286 40.909 13.12 0.00 40.67 3.67
3769 5026 3.634202 CCTCCTGGCGATCCTCAA 58.366 61.111 0.00 0.00 0.00 3.02
3863 7738 5.163744 GCCGAGAGAATAAAGGAAGGAAAAC 60.164 44.000 0.00 0.00 0.00 2.43
3864 7739 5.938125 CCGAGAGAATAAAGGAAGGAAAACA 59.062 40.000 0.00 0.00 0.00 2.83
3865 7740 6.092807 CCGAGAGAATAAAGGAAGGAAAACAG 59.907 42.308 0.00 0.00 0.00 3.16
3866 7741 6.874134 CGAGAGAATAAAGGAAGGAAAACAGA 59.126 38.462 0.00 0.00 0.00 3.41
3869 7744 9.072375 AGAGAATAAAGGAAGGAAAACAGAAAG 57.928 33.333 0.00 0.00 0.00 2.62
3870 7745 8.183104 AGAATAAAGGAAGGAAAACAGAAAGG 57.817 34.615 0.00 0.00 0.00 3.11
3871 7746 6.918067 ATAAAGGAAGGAAAACAGAAAGGG 57.082 37.500 0.00 0.00 0.00 3.95
3872 7747 3.973472 AGGAAGGAAAACAGAAAGGGT 57.027 42.857 0.00 0.00 0.00 4.34
3873 7748 3.833732 AGGAAGGAAAACAGAAAGGGTC 58.166 45.455 0.00 0.00 0.00 4.46
3874 7749 3.463704 AGGAAGGAAAACAGAAAGGGTCT 59.536 43.478 0.00 0.00 36.88 3.85
3884 7759 3.544698 AGAAAGGGTCTGTCTAGGACA 57.455 47.619 0.43 0.43 40.50 4.02
3885 7760 3.166679 AGAAAGGGTCTGTCTAGGACAC 58.833 50.000 0.00 0.00 37.67 3.67
3886 7761 2.696526 AAGGGTCTGTCTAGGACACA 57.303 50.000 3.18 0.00 39.36 3.72
3887 7762 2.930109 AGGGTCTGTCTAGGACACAT 57.070 50.000 3.18 0.00 39.36 3.21
3888 7763 2.741145 AGGGTCTGTCTAGGACACATC 58.259 52.381 3.18 0.00 39.36 3.06
3889 7764 2.313342 AGGGTCTGTCTAGGACACATCT 59.687 50.000 3.18 0.00 39.36 2.90
3890 7765 3.528078 AGGGTCTGTCTAGGACACATCTA 59.472 47.826 3.18 0.00 39.36 1.98
3891 7766 3.886505 GGGTCTGTCTAGGACACATCTAG 59.113 52.174 0.00 0.00 37.67 2.43
3892 7767 4.385421 GGGTCTGTCTAGGACACATCTAGA 60.385 50.000 0.00 0.00 37.67 2.43
3893 7768 5.381757 GGTCTGTCTAGGACACATCTAGAT 58.618 45.833 0.00 0.00 43.25 1.98
3894 7769 5.240623 GGTCTGTCTAGGACACATCTAGATG 59.759 48.000 27.63 27.63 43.25 2.90
3927 7802 9.765795 AGTTATGTCACATCTAACCTAATAAGC 57.234 33.333 0.00 0.00 0.00 3.09
3928 7803 9.542462 GTTATGTCACATCTAACCTAATAAGCA 57.458 33.333 0.00 0.00 0.00 3.91
3929 7804 9.542462 TTATGTCACATCTAACCTAATAAGCAC 57.458 33.333 0.00 0.00 0.00 4.40
3930 7805 7.182817 TGTCACATCTAACCTAATAAGCACT 57.817 36.000 0.00 0.00 0.00 4.40
3931 7806 8.301252 TGTCACATCTAACCTAATAAGCACTA 57.699 34.615 0.00 0.00 0.00 2.74
3932 7807 8.924303 TGTCACATCTAACCTAATAAGCACTAT 58.076 33.333 0.00 0.00 0.00 2.12
3933 7808 9.197694 GTCACATCTAACCTAATAAGCACTATG 57.802 37.037 0.00 0.00 0.00 2.23
3934 7809 8.924303 TCACATCTAACCTAATAAGCACTATGT 58.076 33.333 0.00 0.00 0.00 2.29
3935 7810 9.547753 CACATCTAACCTAATAAGCACTATGTT 57.452 33.333 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
218 238 2.498167 GAGCTTGTTTCTTCTCCAGCA 58.502 47.619 0.00 0.00 0.00 4.41
242 262 1.201429 GGTGGGGCTTCCTCTTCTCA 61.201 60.000 0.00 0.00 36.20 3.27
340 1041 2.710096 TTGGTTCATGGCCTACTAGC 57.290 50.000 3.32 0.00 0.00 3.42
351 1052 4.927978 TGTTTGACCGATTTTGGTTCAT 57.072 36.364 0.00 0.00 44.01 2.57
368 1069 8.270030 TCATACATGATCTCTCAGGATTTGTTT 58.730 33.333 0.00 0.00 36.68 2.83
560 1321 1.134340 TGGTTGGTGCAAAGTCGTACT 60.134 47.619 0.00 0.00 0.00 2.73
561 1322 1.301423 TGGTTGGTGCAAAGTCGTAC 58.699 50.000 0.00 0.00 0.00 3.67
562 1323 1.944024 CTTGGTTGGTGCAAAGTCGTA 59.056 47.619 0.00 0.00 0.00 3.43
582 1343 3.499737 CCTGGCACGAACGCATCC 61.500 66.667 0.00 0.00 0.00 3.51
607 1376 3.013921 TGGAAAGTGCTTCTTTGTCGTT 58.986 40.909 11.03 0.00 45.15 3.85
641 1410 3.237741 CAGGGGATCCGGCTCCTC 61.238 72.222 23.14 20.27 35.87 3.71
642 1411 3.767268 TCAGGGGATCCGGCTCCT 61.767 66.667 23.14 9.62 38.33 3.69
643 1412 3.551407 GTCAGGGGATCCGGCTCC 61.551 72.222 16.35 16.35 38.33 4.70
644 1413 3.917760 CGTCAGGGGATCCGGCTC 61.918 72.222 5.45 0.00 38.33 4.70
645 1414 3.369410 TACGTCAGGGGATCCGGCT 62.369 63.158 5.45 0.00 38.33 5.52
646 1415 2.836360 TACGTCAGGGGATCCGGC 60.836 66.667 5.45 0.00 38.33 6.13
647 1416 2.842256 CGTACGTCAGGGGATCCGG 61.842 68.421 7.22 0.00 38.33 5.14
648 1417 2.719979 CGTACGTCAGGGGATCCG 59.280 66.667 7.22 0.00 38.33 4.18
649 1418 3.126528 CCGTACGTCAGGGGATCC 58.873 66.667 15.21 1.92 0.00 3.36
650 1419 2.416260 GCCGTACGTCAGGGGATC 59.584 66.667 15.21 0.00 32.45 3.36
651 1420 3.152400 GGCCGTACGTCAGGGGAT 61.152 66.667 15.21 0.00 32.45 3.85
652 1421 4.682334 TGGCCGTACGTCAGGGGA 62.682 66.667 15.21 0.00 32.45 4.81
653 1422 4.446413 GTGGCCGTACGTCAGGGG 62.446 72.222 15.21 0.00 32.45 4.79
654 1423 4.446413 GGTGGCCGTACGTCAGGG 62.446 72.222 15.21 0.00 35.13 4.45
655 1424 3.379445 AGGTGGCCGTACGTCAGG 61.379 66.667 15.21 0.00 0.00 3.86
656 1425 2.126071 CAGGTGGCCGTACGTCAG 60.126 66.667 15.21 0.00 0.00 3.51
657 1426 2.598099 TCAGGTGGCCGTACGTCA 60.598 61.111 15.21 9.40 0.00 4.35
658 1427 2.126189 GTCAGGTGGCCGTACGTC 60.126 66.667 15.21 0.00 0.00 4.34
659 1428 4.047059 CGTCAGGTGGCCGTACGT 62.047 66.667 15.21 0.00 33.91 3.57
660 1429 3.562779 AACGTCAGGTGGCCGTACG 62.563 63.158 8.69 8.69 40.48 3.67
661 1430 2.025418 CAACGTCAGGTGGCCGTAC 61.025 63.158 0.00 0.00 33.88 3.67
662 1431 2.340809 CAACGTCAGGTGGCCGTA 59.659 61.111 0.00 0.00 33.88 4.02
668 1437 2.978010 GTGGCCCAACGTCAGGTG 60.978 66.667 0.00 0.00 34.07 4.00
669 1438 3.168528 AGTGGCCCAACGTCAGGT 61.169 61.111 0.00 0.00 0.00 4.00
670 1439 2.669569 CAGTGGCCCAACGTCAGG 60.670 66.667 0.00 0.00 0.00 3.86
671 1440 1.961277 GTCAGTGGCCCAACGTCAG 60.961 63.158 0.00 0.00 0.00 3.51
672 1441 2.110213 GTCAGTGGCCCAACGTCA 59.890 61.111 0.00 0.00 0.00 4.35
673 1442 3.041940 CGTCAGTGGCCCAACGTC 61.042 66.667 0.00 0.00 0.00 4.34
695 1464 4.368543 GACGTGTGGACCCGGACC 62.369 72.222 0.73 6.89 0.00 4.46
696 1465 3.569049 CTGACGTGTGGACCCGGAC 62.569 68.421 0.73 0.00 0.00 4.79
697 1466 3.299977 CTGACGTGTGGACCCGGA 61.300 66.667 0.73 0.00 0.00 5.14
700 1469 3.916392 CTCGCTGACGTGTGGACCC 62.916 68.421 0.00 0.00 41.18 4.46
701 1470 2.430921 CTCGCTGACGTGTGGACC 60.431 66.667 0.00 0.00 41.18 4.46
702 1471 2.335369 ACTCGCTGACGTGTGGAC 59.665 61.111 0.00 0.00 43.76 4.02
715 1484 4.746951 TGACGTACGGCGCACTCG 62.747 66.667 21.06 6.32 46.11 4.18
716 1485 2.874780 CTGACGTACGGCGCACTC 60.875 66.667 21.06 7.29 46.11 3.51
717 1486 3.324099 CTCTGACGTACGGCGCACT 62.324 63.158 21.06 0.00 46.11 4.40
718 1487 2.874780 CTCTGACGTACGGCGCAC 60.875 66.667 21.06 2.50 46.11 5.34
719 1488 4.111016 CCTCTGACGTACGGCGCA 62.111 66.667 21.06 13.22 46.11 6.09
720 1489 3.736482 CTCCTCTGACGTACGGCGC 62.736 68.421 21.06 0.00 46.11 6.53
722 1491 2.102553 GCTCCTCTGACGTACGGC 59.897 66.667 21.06 18.72 0.00 5.68
723 1492 1.429825 CAGCTCCTCTGACGTACGG 59.570 63.158 21.06 1.50 45.72 4.02
724 1493 1.226435 GCAGCTCCTCTGACGTACG 60.226 63.158 15.01 15.01 45.72 3.67
725 1494 1.226435 CGCAGCTCCTCTGACGTAC 60.226 63.158 0.00 0.00 45.72 3.67
726 1495 1.645704 GACGCAGCTCCTCTGACGTA 61.646 60.000 11.86 0.00 46.96 3.57
727 1496 2.986413 ACGCAGCTCCTCTGACGT 60.986 61.111 0.00 0.00 45.72 4.34
728 1497 2.202544 GACGCAGCTCCTCTGACG 60.203 66.667 0.00 2.37 45.72 4.35
729 1498 2.183046 GGACGCAGCTCCTCTGAC 59.817 66.667 4.17 0.00 45.72 3.51
730 1499 3.443925 CGGACGCAGCTCCTCTGA 61.444 66.667 8.67 0.00 45.72 3.27
731 1500 3.753434 ACGGACGCAGCTCCTCTG 61.753 66.667 8.67 0.53 45.62 3.35
732 1501 3.753434 CACGGACGCAGCTCCTCT 61.753 66.667 8.67 0.00 0.00 3.69
733 1502 2.564553 ATTCACGGACGCAGCTCCTC 62.565 60.000 8.67 0.00 0.00 3.71
734 1503 2.650116 ATTCACGGACGCAGCTCCT 61.650 57.895 8.67 0.00 0.00 3.69
735 1504 2.125512 ATTCACGGACGCAGCTCC 60.126 61.111 0.00 0.00 0.00 4.70
736 1505 2.456119 CCATTCACGGACGCAGCTC 61.456 63.158 0.00 0.00 0.00 4.09
737 1506 2.434884 CCATTCACGGACGCAGCT 60.435 61.111 0.00 0.00 0.00 4.24
738 1507 1.369091 ATTCCATTCACGGACGCAGC 61.369 55.000 0.00 0.00 33.75 5.25
739 1508 0.652592 GATTCCATTCACGGACGCAG 59.347 55.000 0.00 0.00 33.75 5.18
740 1509 0.249120 AGATTCCATTCACGGACGCA 59.751 50.000 0.00 0.00 33.75 5.24
741 1510 0.931005 GAGATTCCATTCACGGACGC 59.069 55.000 0.00 0.00 33.75 5.19
742 1511 1.134818 TGGAGATTCCATTCACGGACG 60.135 52.381 0.00 0.00 42.67 4.79
743 1512 2.691409 TGGAGATTCCATTCACGGAC 57.309 50.000 0.00 0.00 42.67 4.79
753 1522 4.152284 ACGGTAGGAAAATGGAGATTCC 57.848 45.455 0.00 0.00 44.45 3.01
965 1742 4.041567 TGAATTCAGCCTCCAACTCACTAA 59.958 41.667 3.38 0.00 0.00 2.24
980 1757 0.179062 CCTCGCCTCCCTGAATTCAG 60.179 60.000 25.75 25.75 43.40 3.02
984 1761 2.049627 GCATCCTCGCCTCCCTGAAT 62.050 60.000 0.00 0.00 0.00 2.57
1023 1803 2.606826 GGGACGACCACCTCCCTT 60.607 66.667 6.20 0.00 42.84 3.95
1074 1854 1.533219 CTGGTCCATGCCATAGCCA 59.467 57.895 0.00 0.00 37.96 4.75
1080 1860 4.408821 GACGCCTGGTCCATGCCA 62.409 66.667 12.95 0.00 39.90 4.92
1141 1921 1.741401 GCATGCCTGTGTACGAGCA 60.741 57.895 6.36 2.07 40.00 4.26
1143 1923 2.802667 GCGCATGCCTGTGTACGAG 61.803 63.158 13.15 0.00 35.25 4.18
1167 1948 0.457166 CGATTCACCGACGTAGGCAA 60.457 55.000 15.29 8.32 33.69 4.52
1197 1982 3.241530 TGTGTCCAGAAGCCGGCT 61.242 61.111 27.08 27.08 0.00 5.52
1219 2004 1.202817 GAAGTCCCAGTCGAAGAGGAC 59.797 57.143 17.18 17.18 46.02 3.85
1293 2090 2.507102 AGCGCAATCAGGTCGTCG 60.507 61.111 11.47 0.00 0.00 5.12
1305 2102 2.491621 CTCTCGTCCATCAGCGCA 59.508 61.111 11.47 0.00 0.00 6.09
1448 2245 0.255604 TGGATCCCGACGTAGGTACA 59.744 55.000 14.00 0.00 0.00 2.90
1449 2246 1.268899 CATGGATCCCGACGTAGGTAC 59.731 57.143 14.00 4.48 0.00 3.34
1450 2247 1.612676 CATGGATCCCGACGTAGGTA 58.387 55.000 14.00 0.00 0.00 3.08
1451 2248 1.745320 GCATGGATCCCGACGTAGGT 61.745 60.000 14.00 0.00 0.00 3.08
1452 2249 1.006102 GCATGGATCCCGACGTAGG 60.006 63.158 9.90 7.88 0.00 3.18
1453 2250 0.318441 ATGCATGGATCCCGACGTAG 59.682 55.000 9.90 0.00 0.00 3.51
1454 2251 0.033366 CATGCATGGATCCCGACGTA 59.967 55.000 19.40 0.00 0.00 3.57
1455 2252 1.227645 CATGCATGGATCCCGACGT 60.228 57.895 19.40 0.00 0.00 4.34
1456 2253 2.610694 GCATGCATGGATCCCGACG 61.611 63.158 27.34 0.00 0.00 5.12
1457 2254 0.892358 ATGCATGCATGGATCCCGAC 60.892 55.000 31.74 8.62 33.26 4.79
1458 2255 0.691904 TATGCATGCATGGATCCCGA 59.308 50.000 37.43 16.20 39.62 5.14
1459 2256 0.806868 GTATGCATGCATGGATCCCG 59.193 55.000 37.43 5.24 39.62 5.14
1460 2257 0.806868 CGTATGCATGCATGGATCCC 59.193 55.000 37.43 23.72 39.62 3.85
1461 2258 0.806868 CCGTATGCATGCATGGATCC 59.193 55.000 37.43 23.16 39.62 3.36
1499 2304 4.843719 TCGATCTCCGACGGGCGA 62.844 66.667 15.25 14.88 43.23 5.54
1507 2312 1.135660 CATACATCGGGTCGATCTCCG 60.136 57.143 15.56 15.56 45.19 4.63
1509 2314 2.552743 TGACATACATCGGGTCGATCTC 59.447 50.000 0.00 0.00 45.19 2.75
1510 2315 2.293677 GTGACATACATCGGGTCGATCT 59.706 50.000 0.00 0.00 45.19 2.75
1513 2318 0.742505 GGTGACATACATCGGGTCGA 59.257 55.000 0.00 0.00 41.13 4.20
1543 2350 4.778415 CCAGACTCACGCCGGTCG 62.778 72.222 15.25 15.25 45.38 4.79
1562 2372 2.372690 GCACGATAGGTATGGCGCG 61.373 63.158 0.00 0.00 43.77 6.86
1563 2373 1.300620 TGCACGATAGGTATGGCGC 60.301 57.895 0.00 0.00 43.77 6.53
1564 2374 1.275471 CGTGCACGATAGGTATGGCG 61.275 60.000 34.93 1.01 43.02 5.69
1565 2375 1.557443 GCGTGCACGATAGGTATGGC 61.557 60.000 41.19 16.47 43.02 4.40
1566 2376 0.249280 TGCGTGCACGATAGGTATGG 60.249 55.000 41.19 10.08 43.02 2.74
1567 2377 0.852777 GTGCGTGCACGATAGGTATG 59.147 55.000 41.19 10.87 43.02 2.39
1568 2378 3.267900 GTGCGTGCACGATAGGTAT 57.732 52.632 41.19 0.00 43.02 2.73
1569 2379 4.798288 GTGCGTGCACGATAGGTA 57.202 55.556 41.19 16.66 43.02 3.08
1589 2399 7.212976 GCTAGATCTGGATGAATCACAAGTTA 58.787 38.462 10.75 0.00 0.00 2.24
1600 2410 3.070159 CCGAAAAGGCTAGATCTGGATGA 59.930 47.826 10.75 0.00 0.00 2.92
1601 2411 3.070159 TCCGAAAAGGCTAGATCTGGATG 59.930 47.826 10.75 0.00 40.77 3.51
1602 2412 3.309296 TCCGAAAAGGCTAGATCTGGAT 58.691 45.455 10.75 0.00 40.77 3.41
1603 2413 2.747177 TCCGAAAAGGCTAGATCTGGA 58.253 47.619 10.75 0.00 40.77 3.86
1604 2414 3.760580 ATCCGAAAAGGCTAGATCTGG 57.239 47.619 5.18 2.94 40.77 3.86
1605 2415 7.227512 ACAATAAATCCGAAAAGGCTAGATCTG 59.772 37.037 5.18 0.00 40.77 2.90
1606 2416 7.227512 CACAATAAATCCGAAAAGGCTAGATCT 59.772 37.037 0.00 0.00 40.77 2.75
1607 2417 7.226720 TCACAATAAATCCGAAAAGGCTAGATC 59.773 37.037 0.00 0.00 40.77 2.75
1753 2563 0.461339 ACTGTAGTTATTGGGCGGCG 60.461 55.000 0.51 0.51 0.00 6.46
1847 2657 2.607771 GCTGGTACAAACGTCCGACTTA 60.608 50.000 0.00 0.00 38.70 2.24
1851 2661 1.200716 CTAGCTGGTACAAACGTCCGA 59.799 52.381 0.00 0.00 38.70 4.55
1854 2664 2.365408 AGCTAGCTGGTACAAACGTC 57.635 50.000 18.57 0.00 38.70 4.34
1856 2666 3.505464 ACTAGCTAGCTGGTACAAACG 57.495 47.619 30.04 8.24 38.70 3.60
1860 2670 7.037802 TGGATATACTACTAGCTAGCTGGTACA 60.038 40.741 30.60 22.87 38.66 2.90
1896 3084 5.359009 TCAGTGGACTTAATTAGACGTAGGG 59.641 44.000 0.00 0.00 0.00 3.53
1908 3096 9.871238 GACATAGAAAATACTCAGTGGACTTAA 57.129 33.333 0.00 0.00 0.00 1.85
1909 3097 9.256228 AGACATAGAAAATACTCAGTGGACTTA 57.744 33.333 0.00 0.00 0.00 2.24
1997 3188 9.862371 TGACACTTAGCAAAATTGTTTCTTAAA 57.138 25.926 0.00 0.00 0.00 1.52
2001 3192 7.100458 ACTGACACTTAGCAAAATTGTTTCT 57.900 32.000 0.00 0.00 0.00 2.52
2002 3193 6.140737 CGACTGACACTTAGCAAAATTGTTTC 59.859 38.462 0.00 0.00 0.00 2.78
2003 3194 5.971202 CGACTGACACTTAGCAAAATTGTTT 59.029 36.000 0.00 0.00 0.00 2.83
2004 3195 5.295787 TCGACTGACACTTAGCAAAATTGTT 59.704 36.000 0.00 0.00 0.00 2.83
2005 3196 4.814234 TCGACTGACACTTAGCAAAATTGT 59.186 37.500 0.00 0.00 0.00 2.71
2006 3197 5.342806 TCGACTGACACTTAGCAAAATTG 57.657 39.130 0.00 0.00 0.00 2.32
2007 3198 6.017109 ACAATCGACTGACACTTAGCAAAATT 60.017 34.615 0.00 0.00 0.00 1.82
2008 3199 5.470098 ACAATCGACTGACACTTAGCAAAAT 59.530 36.000 0.00 0.00 0.00 1.82
2009 3200 4.814234 ACAATCGACTGACACTTAGCAAAA 59.186 37.500 0.00 0.00 0.00 2.44
2010 3201 4.211164 CACAATCGACTGACACTTAGCAAA 59.789 41.667 0.00 0.00 0.00 3.68
2011 3202 3.740832 CACAATCGACTGACACTTAGCAA 59.259 43.478 0.00 0.00 0.00 3.91
2012 3203 3.005367 TCACAATCGACTGACACTTAGCA 59.995 43.478 0.00 0.00 0.00 3.49
2013 3204 3.365220 GTCACAATCGACTGACACTTAGC 59.635 47.826 0.00 0.00 37.36 3.09
2014 3205 4.799678 AGTCACAATCGACTGACACTTAG 58.200 43.478 17.50 0.00 44.59 2.18
2015 3206 4.848562 AGTCACAATCGACTGACACTTA 57.151 40.909 17.50 0.00 44.59 2.24
2016 3207 3.735237 AGTCACAATCGACTGACACTT 57.265 42.857 17.50 0.38 44.59 3.16
2017 3208 3.643763 GAAGTCACAATCGACTGACACT 58.356 45.455 17.50 8.87 45.56 3.55
2018 3209 2.405357 CGAAGTCACAATCGACTGACAC 59.595 50.000 17.50 7.04 45.56 3.67
2019 3210 2.034179 ACGAAGTCACAATCGACTGACA 59.966 45.455 17.50 0.00 45.56 3.58
2020 3211 2.662700 ACGAAGTCACAATCGACTGAC 58.337 47.619 0.00 6.25 45.56 3.51
2021 3212 3.364889 AACGAAGTCACAATCGACTGA 57.635 42.857 0.00 0.00 45.56 3.41
2022 3213 4.621460 ACATAACGAAGTCACAATCGACTG 59.379 41.667 9.70 0.00 45.56 3.51
2024 3215 4.857588 AGACATAACGAAGTCACAATCGAC 59.142 41.667 9.70 0.00 45.00 4.20
2025 3216 5.055642 AGACATAACGAAGTCACAATCGA 57.944 39.130 9.70 0.00 45.00 3.59
2026 3217 4.857037 TGAGACATAACGAAGTCACAATCG 59.143 41.667 1.80 1.80 45.00 3.34
2027 3218 5.864474 ACTGAGACATAACGAAGTCACAATC 59.136 40.000 0.00 0.00 45.00 2.67
2028 3219 5.784177 ACTGAGACATAACGAAGTCACAAT 58.216 37.500 0.00 0.00 45.00 2.71
2029 3220 5.196341 ACTGAGACATAACGAAGTCACAA 57.804 39.130 0.00 0.00 45.00 3.33
2030 3221 4.277423 TGACTGAGACATAACGAAGTCACA 59.723 41.667 0.00 0.00 45.00 3.58
2031 3222 4.795268 TGACTGAGACATAACGAAGTCAC 58.205 43.478 0.00 0.00 45.00 3.67
2032 3223 5.447624 TTGACTGAGACATAACGAAGTCA 57.552 39.130 0.00 0.00 45.00 3.41
2033 3224 5.220303 GCATTGACTGAGACATAACGAAGTC 60.220 44.000 0.00 0.00 45.00 3.01
2034 3225 7.554651 CAGCATTGACTGAGACATAACGAAGT 61.555 42.308 0.00 0.00 41.52 3.01
2035 3226 4.867047 AGCATTGACTGAGACATAACGAAG 59.133 41.667 0.00 0.00 0.00 3.79
2036 3227 4.627035 CAGCATTGACTGAGACATAACGAA 59.373 41.667 0.00 0.00 40.25 3.85
2037 3228 4.176271 CAGCATTGACTGAGACATAACGA 58.824 43.478 0.00 0.00 40.25 3.85
2038 3229 3.928992 ACAGCATTGACTGAGACATAACG 59.071 43.478 12.89 0.00 40.25 3.18
2039 3230 5.174395 AGACAGCATTGACTGAGACATAAC 58.826 41.667 12.89 0.00 40.25 1.89
2040 3231 5.411831 AGACAGCATTGACTGAGACATAA 57.588 39.130 12.89 0.00 40.25 1.90
2041 3232 5.411831 AAGACAGCATTGACTGAGACATA 57.588 39.130 12.89 0.00 40.25 2.29
2042 3233 3.977134 AGACAGCATTGACTGAGACAT 57.023 42.857 12.89 0.00 40.25 3.06
2043 3234 3.555795 GGAAGACAGCATTGACTGAGACA 60.556 47.826 12.89 0.00 40.25 3.41
2044 3235 2.999355 GGAAGACAGCATTGACTGAGAC 59.001 50.000 12.89 6.12 40.25 3.36
2045 3236 2.902486 AGGAAGACAGCATTGACTGAGA 59.098 45.455 12.89 0.00 40.25 3.27
2046 3237 3.331478 AGGAAGACAGCATTGACTGAG 57.669 47.619 12.89 0.00 40.25 3.35
2047 3238 3.777106 AAGGAAGACAGCATTGACTGA 57.223 42.857 12.89 0.00 40.25 3.41
2048 3239 3.817084 TCAAAGGAAGACAGCATTGACTG 59.183 43.478 6.56 6.56 43.59 3.51
2049 3240 4.090761 TCAAAGGAAGACAGCATTGACT 57.909 40.909 0.00 0.00 0.00 3.41
2050 3241 5.382618 AATCAAAGGAAGACAGCATTGAC 57.617 39.130 0.00 0.00 30.46 3.18
2051 3242 6.218019 CAAAATCAAAGGAAGACAGCATTGA 58.782 36.000 0.00 0.00 0.00 2.57
2052 3243 5.107220 GCAAAATCAAAGGAAGACAGCATTG 60.107 40.000 0.00 0.00 0.00 2.82
2053 3244 4.992951 GCAAAATCAAAGGAAGACAGCATT 59.007 37.500 0.00 0.00 0.00 3.56
2054 3245 4.039488 TGCAAAATCAAAGGAAGACAGCAT 59.961 37.500 0.00 0.00 0.00 3.79
2055 3246 3.384146 TGCAAAATCAAAGGAAGACAGCA 59.616 39.130 0.00 0.00 0.00 4.41
2056 3247 3.981211 TGCAAAATCAAAGGAAGACAGC 58.019 40.909 0.00 0.00 0.00 4.40
2057 3248 4.927425 CCATGCAAAATCAAAGGAAGACAG 59.073 41.667 0.00 0.00 0.00 3.51
2058 3249 4.588106 TCCATGCAAAATCAAAGGAAGACA 59.412 37.500 0.00 0.00 0.00 3.41
2059 3250 5.047802 TCTCCATGCAAAATCAAAGGAAGAC 60.048 40.000 0.00 0.00 0.00 3.01
2060 3251 5.078949 TCTCCATGCAAAATCAAAGGAAGA 58.921 37.500 0.00 0.00 0.00 2.87
2061 3252 5.395682 TCTCCATGCAAAATCAAAGGAAG 57.604 39.130 0.00 0.00 0.00 3.46
2062 3253 6.363167 AATCTCCATGCAAAATCAAAGGAA 57.637 33.333 0.00 0.00 0.00 3.36
2063 3254 6.167685 CAAATCTCCATGCAAAATCAAAGGA 58.832 36.000 0.00 0.00 0.00 3.36
2064 3255 5.935789 ACAAATCTCCATGCAAAATCAAAGG 59.064 36.000 0.00 0.00 0.00 3.11
2065 3256 7.599621 TGTACAAATCTCCATGCAAAATCAAAG 59.400 33.333 0.00 0.00 0.00 2.77
2066 3257 7.440198 TGTACAAATCTCCATGCAAAATCAAA 58.560 30.769 0.00 0.00 0.00 2.69
2067 3258 6.990798 TGTACAAATCTCCATGCAAAATCAA 58.009 32.000 0.00 0.00 0.00 2.57
2068 3259 6.587206 TGTACAAATCTCCATGCAAAATCA 57.413 33.333 0.00 0.00 0.00 2.57
2069 3260 7.887996 TTTGTACAAATCTCCATGCAAAATC 57.112 32.000 17.01 0.00 0.00 2.17
2070 3261 8.674263 TTTTTGTACAAATCTCCATGCAAAAT 57.326 26.923 21.17 0.00 35.47 1.82
2125 3316 8.199449 GCTAGGTCTCAGTCGACTATAGTATAT 58.801 40.741 19.57 9.17 34.38 0.86
2126 3317 7.363705 GGCTAGGTCTCAGTCGACTATAGTATA 60.364 44.444 19.57 11.43 34.38 1.47
2127 3318 6.400568 GCTAGGTCTCAGTCGACTATAGTAT 58.599 44.000 19.57 10.97 34.38 2.12
2128 3319 5.279406 GGCTAGGTCTCAGTCGACTATAGTA 60.279 48.000 19.57 6.73 34.38 1.82
2129 3320 4.503643 GGCTAGGTCTCAGTCGACTATAGT 60.504 50.000 19.57 4.68 34.38 2.12
2130 3321 3.998341 GGCTAGGTCTCAGTCGACTATAG 59.002 52.174 19.57 18.07 34.38 1.31
2131 3322 3.390311 TGGCTAGGTCTCAGTCGACTATA 59.610 47.826 19.57 8.70 34.38 1.31
2132 3323 2.172930 TGGCTAGGTCTCAGTCGACTAT 59.827 50.000 19.57 0.00 34.38 2.12
2133 3324 1.558294 TGGCTAGGTCTCAGTCGACTA 59.442 52.381 19.57 0.00 34.38 2.59
2134 3325 0.328592 TGGCTAGGTCTCAGTCGACT 59.671 55.000 13.58 13.58 34.38 4.18
2135 3326 0.452585 GTGGCTAGGTCTCAGTCGAC 59.547 60.000 7.70 7.70 0.00 4.20
2136 3327 0.037734 TGTGGCTAGGTCTCAGTCGA 59.962 55.000 0.00 0.00 0.00 4.20
2137 3328 0.171455 GTGTGGCTAGGTCTCAGTCG 59.829 60.000 0.00 0.00 0.00 4.18
2138 3329 0.533032 GGTGTGGCTAGGTCTCAGTC 59.467 60.000 0.00 0.00 0.00 3.51
2139 3330 0.905337 GGGTGTGGCTAGGTCTCAGT 60.905 60.000 0.00 0.00 0.00 3.41
2140 3331 0.616111 AGGGTGTGGCTAGGTCTCAG 60.616 60.000 0.00 0.00 0.00 3.35
2141 3332 0.178903 AAGGGTGTGGCTAGGTCTCA 60.179 55.000 0.00 0.00 0.00 3.27
2142 3333 0.984995 AAAGGGTGTGGCTAGGTCTC 59.015 55.000 0.00 0.00 0.00 3.36
2143 3334 2.337359 TAAAGGGTGTGGCTAGGTCT 57.663 50.000 0.00 0.00 0.00 3.85
2144 3335 2.570302 TCTTAAAGGGTGTGGCTAGGTC 59.430 50.000 0.00 0.00 0.00 3.85
2145 3336 2.627933 TCTTAAAGGGTGTGGCTAGGT 58.372 47.619 0.00 0.00 0.00 3.08
2146 3337 3.713826 TTCTTAAAGGGTGTGGCTAGG 57.286 47.619 0.00 0.00 0.00 3.02
2147 3338 5.501156 AGATTTCTTAAAGGGTGTGGCTAG 58.499 41.667 0.00 0.00 0.00 3.42
2148 3339 5.514500 AGATTTCTTAAAGGGTGTGGCTA 57.486 39.130 0.00 0.00 0.00 3.93
2149 3340 4.388577 AGATTTCTTAAAGGGTGTGGCT 57.611 40.909 0.00 0.00 0.00 4.75
2150 3341 7.040409 CCATATAGATTTCTTAAAGGGTGTGGC 60.040 40.741 0.00 0.00 0.00 5.01
2151 3342 8.217799 TCCATATAGATTTCTTAAAGGGTGTGG 58.782 37.037 0.00 0.00 0.00 4.17
2152 3343 9.057089 GTCCATATAGATTTCTTAAAGGGTGTG 57.943 37.037 0.00 0.00 0.00 3.82
2153 3344 9.004231 AGTCCATATAGATTTCTTAAAGGGTGT 57.996 33.333 0.00 0.00 0.00 4.16
2154 3345 9.853177 AAGTCCATATAGATTTCTTAAAGGGTG 57.147 33.333 0.00 0.00 0.00 4.61
2235 3453 1.864711 CACAACGGGTAGTCACAGTTG 59.135 52.381 6.84 6.84 43.99 3.16
2338 3560 8.069574 GGCATTGAAAACGAATTTCTCATTTTT 58.930 29.630 15.67 0.00 46.27 1.94
2534 3756 2.058595 GGAAGCTACGCTCCAGGGA 61.059 63.158 0.00 0.00 38.25 4.20
2636 3858 1.165907 CCAACGATGGTGCACTGTGT 61.166 55.000 17.98 7.72 42.18 3.72
2715 3937 1.146041 ACGTCTGTGCCTGCTTTCA 59.854 52.632 0.00 0.00 0.00 2.69
2719 3941 4.996434 GCCACGTCTGTGCCTGCT 62.996 66.667 0.00 0.00 45.04 4.24
2791 4013 1.878522 GTCGAGTATGCCTGCCACG 60.879 63.158 0.00 0.00 0.00 4.94
2854 4076 1.612146 TTCCTCCTCCGTGCCATCA 60.612 57.895 0.00 0.00 0.00 3.07
2889 4111 1.115467 AATCTCCACCTCAGTAGCGG 58.885 55.000 0.00 0.00 0.00 5.52
2902 4124 1.202687 TCGATGCCACCATCAATCTCC 60.203 52.381 4.76 0.00 46.59 3.71
3013 4235 6.164176 GCAACTTGTAGATGTACAACCTACT 58.836 40.000 25.81 13.72 42.99 2.57
3085 4316 8.671987 ATGTTAACCCAGCTAGAGATATACAT 57.328 34.615 2.48 0.00 0.00 2.29
3099 4330 5.913137 TCATGCCTAAAATGTTAACCCAG 57.087 39.130 2.48 0.00 0.00 4.45
3209 4440 3.285215 CATCTGATGCAGCGCCCC 61.285 66.667 2.29 0.00 0.00 5.80
3261 4492 1.936767 ATGATGCGGTGGATGGGGTT 61.937 55.000 0.00 0.00 0.00 4.11
3326 4557 2.125106 ACCCGGCGCTGATTTCTC 60.125 61.111 20.25 0.00 0.00 2.87
3336 4567 2.901051 CTTAGCACTACCACCCGGCG 62.901 65.000 0.00 0.00 34.57 6.46
3370 4601 4.475135 GGAGCCGAGGGAAGCACC 62.475 72.222 0.00 0.00 38.08 5.01
3381 4612 4.742201 CACACACGGGAGGAGCCG 62.742 72.222 0.00 0.00 37.63 5.52
3387 4618 2.674852 CAAAGATGATCACACACGGGAG 59.325 50.000 0.00 0.00 0.00 4.30
3440 4681 2.825836 GGTTGAGCATGGCCGAGG 60.826 66.667 0.00 0.00 0.00 4.63
3445 4686 0.955428 TCGACTTGGTTGAGCATGGC 60.955 55.000 0.00 0.00 0.00 4.40
3505 4746 3.636231 CCCTGCCACCAAGGACGA 61.636 66.667 0.00 0.00 41.22 4.20
3507 4748 1.299976 CTACCCTGCCACCAAGGAC 59.700 63.158 0.00 0.00 41.22 3.85
3519 4760 1.010170 AGGAAGAAGATGGCCTACCCT 59.990 52.381 3.32 0.00 33.59 4.34
3553 4794 4.517453 TGTAACAAGATTAGCACCAACACC 59.483 41.667 0.00 0.00 0.00 4.16
3554 4795 5.682943 TGTAACAAGATTAGCACCAACAC 57.317 39.130 0.00 0.00 0.00 3.32
3584 4825 4.807304 GCTGAAGTCCAATGCAATATTTGG 59.193 41.667 10.06 10.06 43.10 3.28
3590 4831 2.097825 GGAGCTGAAGTCCAATGCAAT 58.902 47.619 0.00 0.00 33.84 3.56
3598 4839 1.760192 AATGCATGGAGCTGAAGTCC 58.240 50.000 0.00 0.00 45.94 3.85
3604 4845 3.276857 ACTGAACTAATGCATGGAGCTG 58.723 45.455 0.00 0.00 45.94 4.24
3630 4871 1.463056 TGCATGCACGTACAAACTAGC 59.537 47.619 18.46 0.00 0.00 3.42
3681 4938 5.120208 CACGTGACAGGTCCTAGTTATTTTG 59.880 44.000 10.90 0.00 0.00 2.44
3682 4939 5.221581 ACACGTGACAGGTCCTAGTTATTTT 60.222 40.000 25.01 0.00 0.00 1.82
3714 4971 4.072839 ACGACTCGATCTAATCCTATGCA 58.927 43.478 5.20 0.00 0.00 3.96
3718 4975 6.932947 TCATCTACGACTCGATCTAATCCTA 58.067 40.000 5.20 0.00 0.00 2.94
3739 4996 3.303351 CCAGGAGGCTAACCAATTCAT 57.697 47.619 0.00 0.00 39.06 2.57
3768 5025 2.482414 ATTCACCCATGCCATCCATT 57.518 45.000 0.00 0.00 29.71 3.16
3769 5026 2.225192 CCTATTCACCCATGCCATCCAT 60.225 50.000 0.00 0.00 33.39 3.41
3773 5030 2.290514 CGATCCTATTCACCCATGCCAT 60.291 50.000 0.00 0.00 0.00 4.40
3774 5031 1.072173 CGATCCTATTCACCCATGCCA 59.928 52.381 0.00 0.00 0.00 4.92
3775 5032 1.072331 ACGATCCTATTCACCCATGCC 59.928 52.381 0.00 0.00 0.00 4.40
3777 5034 2.146342 GCACGATCCTATTCACCCATG 58.854 52.381 0.00 0.00 0.00 3.66
3778 5035 1.270305 CGCACGATCCTATTCACCCAT 60.270 52.381 0.00 0.00 0.00 4.00
3779 5036 0.104120 CGCACGATCCTATTCACCCA 59.896 55.000 0.00 0.00 0.00 4.51
3817 5075 2.590575 CGCCCAACAGAACGTGGT 60.591 61.111 0.00 0.00 0.00 4.16
3864 7739 3.166679 GTGTCCTAGACAGACCCTTTCT 58.833 50.000 0.00 0.00 43.57 2.52
3865 7740 2.897969 TGTGTCCTAGACAGACCCTTTC 59.102 50.000 0.00 0.00 43.57 2.62
3866 7741 2.972348 TGTGTCCTAGACAGACCCTTT 58.028 47.619 0.00 0.00 43.57 3.11
3869 7744 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
3870 7745 4.783055 TCTAGATGTGTCCTAGACAGACC 58.217 47.826 0.00 0.00 43.57 3.85
3871 7746 6.312399 CATCTAGATGTGTCCTAGACAGAC 57.688 45.833 22.42 0.00 43.57 3.51
3901 7776 9.765795 GCTTATTAGGTTAGATGTGACATAACT 57.234 33.333 10.13 1.17 31.53 2.24
3902 7777 9.542462 TGCTTATTAGGTTAGATGTGACATAAC 57.458 33.333 0.00 0.00 0.00 1.89
3903 7778 9.542462 GTGCTTATTAGGTTAGATGTGACATAA 57.458 33.333 0.00 0.00 0.00 1.90
3904 7779 8.924303 AGTGCTTATTAGGTTAGATGTGACATA 58.076 33.333 0.00 0.00 0.00 2.29
3905 7780 7.796054 AGTGCTTATTAGGTTAGATGTGACAT 58.204 34.615 0.00 0.00 0.00 3.06
3906 7781 7.182817 AGTGCTTATTAGGTTAGATGTGACA 57.817 36.000 0.00 0.00 0.00 3.58
3907 7782 9.197694 CATAGTGCTTATTAGGTTAGATGTGAC 57.802 37.037 0.00 0.00 0.00 3.67
3908 7783 8.924303 ACATAGTGCTTATTAGGTTAGATGTGA 58.076 33.333 0.00 0.00 0.00 3.58
3909 7784 9.547753 AACATAGTGCTTATTAGGTTAGATGTG 57.452 33.333 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.