AutoCloner

Multiple sequence alignment - TraesCS1A01G434500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G434500	chr1A	100.000	2463	0	0	1	2463	585232673	585230211	0.000000e+00	4549.0
1	TraesCS1A01G434500	chr7A	94.900	549	20	4	1918	2463	666556786	666557329	0.000000e+00	852.0
2	TraesCS1A01G434500	chr7A	94.737	437	19	3	55	488	403182172	403182607	0.000000e+00	676.0
3	TraesCS1A01G434500	chr7A	94.737	437	19	3	55	488	403183606	403184041	0.000000e+00	676.0
4	TraesCS1A01G434500	chr7A	94.737	437	19	3	55	488	403188168	403188603	0.000000e+00	676.0
5	TraesCS1A01G434500	chr7A	94.508	437	20	3	55	488	403186474	403186909	0.000000e+00	671.0
6	TraesCS1A01G434500	chr7A	94.279	437	21	3	55	488	403185040	403185475	0.000000e+00	665.0
7	TraesCS1A01G434500	chr7A	94.279	437	20	4	55	488	403180739	403181173	0.000000e+00	664.0
8	TraesCS1A01G434500	chr7A	94.318	352	17	1	1570	1918	666556388	666556739	1.000000e-148	536.0
9	TraesCS1A01G434500	chr4A	95.037	544	22	3	1921	2463	637067959	637067420	0.000000e+00	850.0
10	TraesCS1A01G434500	chr4A	94.186	344	20	0	1571	1914	637068355	637068012	2.170000e-145	525.0
11	TraesCS1A01G434500	chr2A	93.773	546	25	3	1921	2463	42596985	42596446	0.000000e+00	811.0
12	TraesCS1A01G434500	chr2A	94.737	437	19	4	56	489	645250853	645251288	0.000000e+00	676.0
13	TraesCS1A01G434500	chr2A	86.286	350	21	14	1572	1921	42597354	42597032	3.010000e-94	355.0
14	TraesCS1A01G434500	chr2A	87.037	324	31	6	2142	2463	281239453	281239767	3.010000e-94	355.0
15	TraesCS1A01G434500	chr2A	85.669	314	41	3	2151	2463	708392345	708392655	6.570000e-86	327.0
16	TraesCS1A01G434500	chr5A	94.655	449	17	6	46	489	439444111	439444557	0.000000e+00	689.0
17	TraesCS1A01G434500	chr5A	93.822	437	22	4	56	489	262286920	262287354	0.000000e+00	652.0
18	TraesCS1A01G434500	chr5A	83.935	554	59	12	1037	1563	523879593	523879043	1.020000e-138	503.0
19	TraesCS1A01G434500	chr5A	83.784	370	36	9	685	1031	523879997	523879629	1.830000e-86	329.0
20	TraesCS1A01G434500	chr3D	87.203	547	58	6	493	1031	322682036	322682578	1.620000e-171	612.0
21	TraesCS1A01G434500	chr3D	83.636	550	65	10	1036	1565	322682613	322683157	6.120000e-136	494.0
22	TraesCS1A01G434500	chr6A	82.062	708	95	23	493	1176	420553175	420552476	2.120000e-160	575.0
23	TraesCS1A01G434500	chr6A	85.266	319	38	6	2146	2463	89897219	89897529	1.100000e-83	320.0
24	TraesCS1A01G434500	chr5D	86.151	556	50	9	1037	1565	412147747	412147192	2.120000e-160	575.0
25	TraesCS1A01G434500	chr5D	87.535	361	30	7	685	1031	412148142	412147783	1.060000e-108	403.0
26	TraesCS1A01G434500	chr1B	90.604	447	16	8	488	918	489693046	489693482	9.880000e-159	569.0
27	TraesCS1A01G434500	chr1B	90.102	394	35	3	1172	1565	489694794	489695183	2.190000e-140	508.0
28	TraesCS1A01G434500	chr1B	94.180	189	7	1	916	1104	489693773	489693957	4.010000e-73	285.0
29	TraesCS1A01G434500	chr5B	85.432	556	54	13	1037	1565	495473514	495472959	9.950000e-154	553.0
30	TraesCS1A01G434500	chr5B	87.382	317	34	4	2148	2463	405707529	405707218	2.330000e-95	359.0
31	TraesCS1A01G434500	chr5B	84.746	354	44	7	685	1031	495473900	495473550	1.810000e-91	346.0
32	TraesCS1A01G434500	chr2B	85.185	459	49	12	566	1018	769581128	769581573	1.040000e-123	453.0
33	TraesCS1A01G434500	chr7D	88.764	356	31	2	822	1177	292243286	292242940	6.290000e-116	427.0
34	TraesCS1A01G434500	chr7D	92.827	237	13	2	488	724	292254572	292254340	8.440000e-90	340.0
35	TraesCS1A01G434500	chr7D	85.893	319	35	6	2152	2463	4739561	4739876	5.080000e-87	331.0
36	TraesCS1A01G434500	chr7D	90.052	191	19	0	1375	1565	292242937	292242747	5.260000e-62	248.0
37	TraesCS1A01G434500	chr7D	95.294	85	4	0	704	788	292249467	292249383	4.270000e-28	135.0
38	TraesCS1A01G434500	chr3A	86.293	321	34	7	2150	2463	154027961	154028278	8.440000e-90	340.0
39	TraesCS1A01G434500	chr1D	90.533	169	14	1	1751	1917	161770823	161770655	3.190000e-54	222.0
40	TraesCS1A01G434500	chr7B	92.063	63	5	0	488	550	50603149	50603087	3.370000e-14	89.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G434500	chr1A	585230211	585232673	2462	True	4549.000000	4549	100.000000	1	2463	1	chr1A.!!$R1	2462
1	TraesCS1A01G434500	chr7A	666556388	666557329	941	False	694.000000	852	94.609000	1570	2463	2	chr7A.!!$F2	893
2	TraesCS1A01G434500	chr7A	403180739	403188603	7864	False	671.333333	676	94.546167	55	488	6	chr7A.!!$F1	433
3	TraesCS1A01G434500	chr4A	637067420	637068355	935	True	687.500000	850	94.611500	1571	2463	2	chr4A.!!$R1	892
4	TraesCS1A01G434500	chr2A	42596446	42597354	908	True	583.000000	811	90.029500	1572	2463	2	chr2A.!!$R1	891
5	TraesCS1A01G434500	chr5A	523879043	523879997	954	True	416.000000	503	83.859500	685	1563	2	chr5A.!!$R1	878
6	TraesCS1A01G434500	chr3D	322682036	322683157	1121	False	553.000000	612	85.419500	493	1565	2	chr3D.!!$F1	1072
7	TraesCS1A01G434500	chr6A	420552476	420553175	699	True	575.000000	575	82.062000	493	1176	1	chr6A.!!$R1	683
8	TraesCS1A01G434500	chr5D	412147192	412148142	950	True	489.000000	575	86.843000	685	1565	2	chr5D.!!$R1	880
9	TraesCS1A01G434500	chr1B	489693046	489695183	2137	False	454.000000	569	91.628667	488	1565	3	chr1B.!!$F1	1077
10	TraesCS1A01G434500	chr5B	495472959	495473900	941	True	449.500000	553	85.089000	685	1565	2	chr5B.!!$R2	880
11	TraesCS1A01G434500	chr7D	292242747	292243286	539	True	337.500000	427	89.408000	822	1565	2	chr7D.!!$R3	743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
40	41	0.109781	CTTCATTTGTTCGTGGGGCG	60.11	55.0	0.0	0.0	43.01	6.13	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1591	6887	0.823769	TGTCTCGTGACCAGTGAGCT	60.824	55.0	14.57	0.0	42.28	4.09	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	5.464030	AGCAATTGAAGATTGACAAGCTT	57.536	34.783	18.16	18.16	40.33	3.74
33	34	5.455392	AGATTGACAAGCTTCATTTGTTCG	58.545	37.500	0.00	0.00	38.78	3.95
34	35	4.630894	TTGACAAGCTTCATTTGTTCGT	57.369	36.364	0.00	0.00	38.78	3.85
35	36	3.951306	TGACAAGCTTCATTTGTTCGTG	58.049	40.909	0.00	0.00	38.78	4.35
36	37	3.243035	TGACAAGCTTCATTTGTTCGTGG	60.243	43.478	0.00	0.00	38.78	4.94
37	38	2.034558	ACAAGCTTCATTTGTTCGTGGG	59.965	45.455	0.00	0.00	35.32	4.61
38	39	1.247567	AGCTTCATTTGTTCGTGGGG	58.752	50.000	0.00	0.00	0.00	4.96
39	40	0.388520	GCTTCATTTGTTCGTGGGGC	60.389	55.000	0.00	0.00	0.00	5.80
40	41	0.109781	CTTCATTTGTTCGTGGGGCG	60.110	55.000	0.00	0.00	43.01	6.13
41	42	1.519751	TTCATTTGTTCGTGGGGCGG	61.520	55.000	0.00	0.00	41.72	6.13
42	43	3.370231	ATTTGTTCGTGGGGCGGC	61.370	61.111	0.00	0.00	41.72	6.53
72	73	2.463589	TAAGGCCAACTCCACCGCAG	62.464	60.000	5.01	0.00	0.00	5.18
90	91	3.833070	CGCAGGACCCTAAATCTATACCT	59.167	47.826	0.00	0.00	0.00	3.08
96	97	9.726438	CAGGACCCTAAATCTATACCTATTTTG	57.274	37.037	0.00	0.00	0.00	2.44
173	174	2.127496	CAAACTCGCTGCACGCAG	60.127	61.111	14.73	14.73	46.15	5.18
186	187	4.925576	CGCAGCGCTACTACCCCG	62.926	72.222	10.99	0.00	0.00	5.73
210	211	1.607178	ACCCCATACGTCGTGGTCA	60.607	57.895	8.47	0.00	34.87	4.02
214	1648	0.529773	CCATACGTCGTGGTCATGGG	60.530	60.000	14.57	0.69	33.87	4.00
311	1747	1.061485	GAAGACGTCCGCTTTCTGTC	58.939	55.000	13.01	0.00	0.00	3.51
357	1793	0.189574	TTTGGTCTGGAAATGGGGCA	59.810	50.000	0.00	0.00	0.00	5.36
422	1858	2.226330	CTGGGTCGTTTGATTTGTCCA	58.774	47.619	0.00	0.00	0.00	4.02
432	1868	5.279256	CGTTTGATTTGTCCATTTTACCCCT	60.279	40.000	0.00	0.00	0.00	4.79
435	1871	7.857404	TTGATTTGTCCATTTTACCCCTAAA	57.143	32.000	0.00	0.00	0.00	1.85
436	1872	7.234661	TGATTTGTCCATTTTACCCCTAAAC	57.765	36.000	0.00	0.00	0.00	2.01
455	1891	2.741612	ACGACACAAACGGACGATTTA	58.258	42.857	0.00	0.00	34.93	1.40
467	1903	4.403432	ACGGACGATTTAGGGTAGAAATGA	59.597	41.667	0.00	0.00	0.00	2.57
497	1933	2.488153	GTGGAGTTGGCCTAACATTCAC	59.512	50.000	16.93	15.86	41.88	3.18
503	1939	3.003394	TGGCCTAACATTCACCAGATG	57.997	47.619	3.32	0.00	0.00	2.90
532	1968	3.181455	ACTTCCCAAATCAAAAACTGCCC	60.181	43.478	0.00	0.00	0.00	5.36
788	2232	2.401766	CCCAGCAAGGCGTCATGTC	61.402	63.158	0.00	0.00	35.39	3.06
789	2233	1.376424	CCAGCAAGGCGTCATGTCT	60.376	57.895	0.00	0.00	0.00	3.41
790	2234	1.364626	CCAGCAAGGCGTCATGTCTC	61.365	60.000	0.00	0.00	0.00	3.36
791	2235	0.671472	CAGCAAGGCGTCATGTCTCA	60.671	55.000	0.00	0.00	0.00	3.27
792	2236	0.251354	AGCAAGGCGTCATGTCTCAT	59.749	50.000	0.00	0.00	0.00	2.90
793	2237	0.376152	GCAAGGCGTCATGTCTCATG	59.624	55.000	0.00	3.65	0.00	3.07
794	2238	1.730501	CAAGGCGTCATGTCTCATGT	58.269	50.000	9.13	0.00	0.00	3.21
870	2326	1.132849	TCCTCTTTGGTGGAGTGGAGA	60.133	52.381	0.00	0.00	33.23	3.71
902	2389	6.660094	TGTATATATGTACGTATGGAGTGGCA	59.340	38.462	16.41	4.69	0.00	4.92
1022	2804	4.704833	GGCACAGGAGAGCGGCAA	62.705	66.667	1.45	0.00	31.58	4.52
1233	6082	1.699634	AGGCTGAGTAAGAACCTGCAA	59.300	47.619	0.00	0.00	0.00	4.08
1368	6653	2.664081	GCAGCTGCCCCTAGTCTGT	61.664	63.158	28.76	0.00	34.31	3.41
1372	6657	3.075005	TGCCCCTAGTCTGTCGCC	61.075	66.667	0.00	0.00	0.00	5.54
1414	6710	4.988598	CGGCCAACTCGGTGCAGT	62.989	66.667	2.24	0.00	36.97	4.40
1427	6723	2.176055	GCAGTCGAGCTTCGTCGA	59.824	61.111	0.00	0.00	46.52	4.20
1516	6812	2.504367	CCGATGTTTTGGAGTTGGACT	58.496	47.619	0.00	0.00	0.00	3.85
1565	6861	0.596600	TTCAAGGTGTCGTCGTCTGC	60.597	55.000	0.00	0.00	0.00	4.26
1567	6863	1.007271	AAGGTGTCGTCGTCTGCAG	60.007	57.895	7.63	7.63	0.00	4.41
1568	6864	1.735376	AAGGTGTCGTCGTCTGCAGT	61.735	55.000	14.67	0.00	0.00	4.40
1704	7000	3.281727	TGCTAAACAATGGGCTCCTAG	57.718	47.619	0.00	0.00	0.00	3.02
1743	7039	0.107654	GCTCCTACCAAGCGTCCAAT	60.108	55.000	0.00	0.00	0.00	3.16
1784	7080	6.101650	GCTAATTAATTAGGCCTGCCAAAT	57.898	37.500	28.27	3.67	40.01	2.32
1843	7139	2.066262	GAAACGAGCAGTCATTTCGGA	58.934	47.619	0.00	0.00	38.58	4.55
1845	7141	3.520290	AACGAGCAGTCATTTCGGATA	57.480	42.857	0.00	0.00	38.58	2.59
1866	7162	7.571983	CGGATATTAGTTTCTGACGTACCGTAT	60.572	40.741	0.00	0.00	41.37	3.06
1938	7284	4.755123	GGCTGAACTACTTGTTGCTTCTTA	59.245	41.667	0.00	0.00	39.30	2.10
2022	7369	2.018542	TTTTAGTTCAGGCGATCGGG	57.981	50.000	18.30	0.00	0.00	5.14
2128	7475	9.952030	TTCAAATCACAACACCTAATCTATGTA	57.048	29.630	0.00	0.00	0.00	2.29
2245	9033	1.617755	CGAACGCTTGCACTGACGAT	61.618	55.000	4.13	0.00	0.00	3.73
2263	9051	2.101582	CGATAAGTCCCTTGCAGCTAGT	59.898	50.000	3.04	0.00	0.00	2.57
2264	9052	3.430929	CGATAAGTCCCTTGCAGCTAGTT	60.431	47.826	3.04	0.00	0.00	2.24
2383	9287	4.623171	CGGCAACAGGGTCTAGTTTTAGAT	60.623	45.833	0.00	0.00	38.17	1.98
2384	9288	5.254115	GGCAACAGGGTCTAGTTTTAGATT	58.746	41.667	0.00	0.00	38.17	2.40
2385	9289	5.710567	GGCAACAGGGTCTAGTTTTAGATTT	59.289	40.000	0.00	0.00	38.17	2.17

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	6.207221	TGAAGCTTGTCAATCTTCAATTGCTA	59.793	34.615	23.17	4.75	42.00	3.49
1	2	5.010314	TGAAGCTTGTCAATCTTCAATTGCT	59.990	36.000	23.17	6.82	42.00	3.91
2	3	5.224888	TGAAGCTTGTCAATCTTCAATTGC	58.775	37.500	23.17	4.81	42.00	3.56
3	4	7.884816	AATGAAGCTTGTCAATCTTCAATTG	57.115	32.000	26.99	0.00	46.08	2.32
4	5	7.929785	ACAAATGAAGCTTGTCAATCTTCAATT	59.070	29.630	26.99	23.20	46.08	2.32
5	6	7.439381	ACAAATGAAGCTTGTCAATCTTCAAT	58.561	30.769	26.99	19.77	46.08	2.57
6	7	6.808829	ACAAATGAAGCTTGTCAATCTTCAA	58.191	32.000	26.99	15.50	46.08	2.69
7	8	6.395426	ACAAATGAAGCTTGTCAATCTTCA	57.605	33.333	25.98	25.98	46.72	3.02
8	9	6.087291	CGAACAAATGAAGCTTGTCAATCTTC	59.913	38.462	18.23	18.23	35.98	2.87
9	10	5.916883	CGAACAAATGAAGCTTGTCAATCTT	59.083	36.000	2.10	1.31	35.98	2.40
10	11	5.009010	ACGAACAAATGAAGCTTGTCAATCT	59.991	36.000	2.10	0.00	35.98	2.40
11	12	5.116074	CACGAACAAATGAAGCTTGTCAATC	59.884	40.000	2.10	0.00	35.98	2.67
12	13	4.977963	CACGAACAAATGAAGCTTGTCAAT	59.022	37.500	2.10	0.00	35.98	2.57
13	14	4.350346	CACGAACAAATGAAGCTTGTCAA	58.650	39.130	2.10	0.00	35.98	3.18
14	15	3.243035	CCACGAACAAATGAAGCTTGTCA	60.243	43.478	2.10	0.00	35.98	3.58
15	16	3.300009	CCACGAACAAATGAAGCTTGTC	58.700	45.455	2.10	0.00	35.98	3.18
16	17	2.034558	CCCACGAACAAATGAAGCTTGT	59.965	45.455	2.10	0.00	38.65	3.16
17	18	2.607771	CCCCACGAACAAATGAAGCTTG	60.608	50.000	2.10	0.00	0.00	4.01
18	19	1.613437	CCCCACGAACAAATGAAGCTT	59.387	47.619	0.00	0.00	0.00	3.74
19	20	1.247567	CCCCACGAACAAATGAAGCT	58.752	50.000	0.00	0.00	0.00	3.74
20	21	0.388520	GCCCCACGAACAAATGAAGC	60.389	55.000	0.00	0.00	0.00	3.86
21	22	3.792716	GCCCCACGAACAAATGAAG	57.207	52.632	0.00	0.00	0.00	3.02
38	39	3.790256	CTTAAATCTGCCGCGCCGC	62.790	63.158	14.04	14.04	0.00	6.53
39	40	2.324477	CTTAAATCTGCCGCGCCG	59.676	61.111	0.00	0.00	0.00	6.46
40	41	2.715624	CCTTAAATCTGCCGCGCC	59.284	61.111	0.00	0.00	0.00	6.53
41	42	2.024729	GCCTTAAATCTGCCGCGC	59.975	61.111	0.00	0.00	0.00	6.86
42	43	2.715624	GGCCTTAAATCTGCCGCG	59.284	61.111	0.00	0.00	35.08	6.46
45	46	1.751351	GGAGTTGGCCTTAAATCTGCC	59.249	52.381	3.32	0.00	45.56	4.85
46	47	2.164422	GTGGAGTTGGCCTTAAATCTGC	59.836	50.000	3.32	0.00	0.00	4.26
47	48	2.755103	GGTGGAGTTGGCCTTAAATCTG	59.245	50.000	3.32	0.00	0.00	2.90
48	49	2.618045	CGGTGGAGTTGGCCTTAAATCT	60.618	50.000	3.32	0.00	0.00	2.40
49	50	1.743394	CGGTGGAGTTGGCCTTAAATC	59.257	52.381	3.32	0.00	0.00	2.17
50	51	1.834188	CGGTGGAGTTGGCCTTAAAT	58.166	50.000	3.32	0.00	0.00	1.40
51	52	0.891904	GCGGTGGAGTTGGCCTTAAA	60.892	55.000	3.32	0.00	0.00	1.52
52	53	1.302993	GCGGTGGAGTTGGCCTTAA	60.303	57.895	3.32	0.00	0.00	1.85
53	54	2.349755	GCGGTGGAGTTGGCCTTA	59.650	61.111	3.32	0.00	0.00	2.69
72	73	9.722184	GACAAAATAGGTATAGATTTAGGGTCC	57.278	37.037	0.00	0.00	0.00	4.46
112	113	8.437575	GTTTGTTCTCCCTATTTCTATCCCATA	58.562	37.037	0.00	0.00	0.00	2.74
118	119	5.123936	GGCGTTTGTTCTCCCTATTTCTAT	58.876	41.667	0.00	0.00	0.00	1.98
173	174	0.390209	TGAAAACGGGGTAGTAGCGC	60.390	55.000	0.00	0.00	0.00	5.92
186	187	1.461897	CACGACGTATGGGGTGAAAAC	59.538	52.381	0.00	0.00	32.23	2.43
210	211	4.659172	CCCACCACGTGCACCCAT	62.659	66.667	10.91	0.00	31.34	4.00
235	1669	4.020218	CCCACATGTCACTCTCCTTTTCTA	60.020	45.833	0.00	0.00	0.00	2.10
401	1837	1.068541	GGACAAATCAAACGACCCAGC	60.069	52.381	0.00	0.00	0.00	4.85
422	1858	5.277925	CGTTTGTGTCGTTTAGGGGTAAAAT	60.278	40.000	0.00	0.00	0.00	1.82
432	1868	2.200792	TCGTCCGTTTGTGTCGTTTA	57.799	45.000	0.00	0.00	0.00	2.01
435	1871	1.574134	AAATCGTCCGTTTGTGTCGT	58.426	45.000	0.00	0.00	0.00	4.34
436	1872	2.091588	CCTAAATCGTCCGTTTGTGTCG	59.908	50.000	0.00	0.00	0.00	4.35
455	1891	1.135083	CGCGTGACTCATTTCTACCCT	60.135	52.381	0.00	0.00	0.00	4.34
467	1903	2.029073	CAACTCCACCGCGTGACT	59.971	61.111	4.92	0.00	35.23	3.41
497	1933	6.380846	TGATTTGGGAAGTAAAATCCATCTGG	59.619	38.462	5.85	0.00	40.51	3.86
503	1939	8.773645	CAGTTTTTGATTTGGGAAGTAAAATCC	58.226	33.333	5.85	0.00	40.51	3.01
551	1987	2.624674	AAAGCAGTGGACGGCAGGTT	62.625	55.000	4.72	0.00	39.54	3.50
552	1988	3.120086	AAAGCAGTGGACGGCAGGT	62.120	57.895	4.72	0.00	39.54	4.00
560	1996	1.442769	GAGCGATTGAAAGCAGTGGA	58.557	50.000	0.00	0.00	35.48	4.02
634	2070	1.748122	CTTGCTGCGATGGAAGGCT	60.748	57.895	0.00	0.00	32.78	4.58
788	2232	2.549754	AGGACGTTCTTTTGCACATGAG	59.450	45.455	0.00	0.00	0.00	2.90
789	2233	2.571212	AGGACGTTCTTTTGCACATGA	58.429	42.857	0.00	0.00	0.00	3.07
790	2234	3.044986	CAAGGACGTTCTTTTGCACATG	58.955	45.455	6.29	0.00	0.00	3.21
791	2235	2.948979	TCAAGGACGTTCTTTTGCACAT	59.051	40.909	6.29	0.00	0.00	3.21
792	2236	2.360844	TCAAGGACGTTCTTTTGCACA	58.639	42.857	6.29	0.00	0.00	4.57
793	2237	3.300009	CATCAAGGACGTTCTTTTGCAC	58.700	45.455	6.29	0.00	0.00	4.57
794	2238	2.293122	CCATCAAGGACGTTCTTTTGCA	59.707	45.455	6.29	0.00	41.22	4.08
870	2326	7.616542	TCCATACGTACATATATACACCCACAT	59.383	37.037	0.00	0.00	0.00	3.21
902	2389	6.560711	GTTCACACATACACTGGAAAGTTTT	58.439	36.000	0.00	0.00	0.00	2.43
1022	2804	4.385405	GGCGCACTCCTGCACTCT	62.385	66.667	10.83	0.00	44.50	3.24
1088	4502	1.961277	CGCTGCACCGAGTCCTTTT	60.961	57.895	0.00	0.00	0.00	2.27
1089	4503	2.357517	CGCTGCACCGAGTCCTTT	60.358	61.111	0.00	0.00	0.00	3.11
1123	4659	3.103911	GACGGTGTCGAAGGTGCG	61.104	66.667	0.00	0.00	40.11	5.34
1233	6082	2.124570	GCCCTCGCCATGACATGT	60.125	61.111	14.26	0.00	0.00	3.21
1285	6358	3.637273	GAACTGGTCGCCCACCCT	61.637	66.667	0.00	0.00	46.18	4.34
1414	6710	1.684714	CTCGACTCGACGAAGCTCGA	61.685	60.000	16.54	16.54	43.74	4.04
1427	6723	4.824515	CCTCCTCCCGCCTCGACT	62.825	72.222	0.00	0.00	0.00	4.18
1516	6812	3.295273	ACTCGTCTCCGTGCTGCA	61.295	61.111	0.00	0.00	35.01	4.41
1591	6887	0.823769	TGTCTCGTGACCAGTGAGCT	60.824	55.000	14.57	0.00	42.28	4.09
1704	7000	1.821136	CCCATCCCACTTCTTTTCTGC	59.179	52.381	0.00	0.00	0.00	4.26
1784	7080	3.364460	ACATTATGCTTGGTGTAGGCA	57.636	42.857	0.00	0.00	46.09	4.75
1866	7162	2.992689	TCGCCGCTGGTTAGTCCA	60.993	61.111	0.00	0.00	45.01	4.02
1914	7213	1.897560	AGCAACAAGTAGTTCAGCCC	58.102	50.000	0.00	0.00	38.74	5.19
1918	7217	7.859325	AAAGTAAGAAGCAACAAGTAGTTCA	57.141	32.000	0.00	0.00	38.74	3.18
2035	7382	7.062371	CAGAATATACCACTATCGTGCTAAAGC	59.938	40.741	0.00	0.00	39.86	3.51
2069	7416	9.273016	CAACATAGAGAGGTTGTAAGAAAAGAA	57.727	33.333	0.00	0.00	41.39	2.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.