Multiple sequence alignment - TraesCS1A01G434200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G434200 chr1A 100.000 4126 0 0 1 4126 584945614 584941489 0.000000e+00 7620
1 TraesCS1A01G434200 chr1A 100.000 778 0 0 1062 1839 584887518 584888295 0.000000e+00 1437
2 TraesCS1A01G434200 chr1A 100.000 648 0 0 1 648 584886318 584886965 0.000000e+00 1197
3 TraesCS1A01G434200 chr1A 96.748 369 11 1 1856 2223 584888281 584888649 7.580000e-172 614
4 TraesCS1A01G434200 chr1D 92.668 982 35 14 2365 3327 427914477 427915440 0.000000e+00 1380
5 TraesCS1A01G434200 chr1D 94.303 509 28 1 1857 2365 427913933 427914440 0.000000e+00 778
6 TraesCS1A01G434200 chr1D 86.613 747 26 28 694 1383 427912092 427912821 0.000000e+00 758
7 TraesCS1A01G434200 chr1D 86.613 747 26 28 694 1383 427942385 427941656 0.000000e+00 758
8 TraesCS1A01G434200 chr1D 95.787 451 18 1 1389 1838 427941257 427940807 0.000000e+00 726
9 TraesCS1A01G434200 chr1D 95.721 444 18 1 1389 1831 427913220 427913663 0.000000e+00 713
10 TraesCS1A01G434200 chr1D 95.710 303 13 0 1856 2158 427940820 427940518 4.790000e-134 488
11 TraesCS1A01G434200 chr1D 83.446 296 18 17 3351 3644 427915436 427915702 3.190000e-61 246
12 TraesCS1A01G434200 chr1D 89.510 143 10 2 3663 3800 427918391 427918533 4.240000e-40 176
13 TraesCS1A01G434200 chr6D 95.807 644 25 2 9 650 14615523 14616166 0.000000e+00 1038
14 TraesCS1A01G434200 chr6D 96.063 635 23 2 20 652 464465369 464466003 0.000000e+00 1033
15 TraesCS1A01G434200 chr6D 94.640 653 28 5 6 652 87385640 87386291 0.000000e+00 1005
16 TraesCS1A01G434200 chrUn 95.652 644 24 3 15 654 83929051 83928408 0.000000e+00 1031
17 TraesCS1A01G434200 chr5B 95.194 645 29 2 9 651 680927231 680927875 0.000000e+00 1018
18 TraesCS1A01G434200 chr6B 94.487 653 32 3 15 664 117774687 117774036 0.000000e+00 1003
19 TraesCS1A01G434200 chr4D 94.737 646 30 4 9 652 47729350 47728707 0.000000e+00 1002
20 TraesCS1A01G434200 chr7D 94.599 648 32 3 6 651 134196942 134197588 0.000000e+00 1000


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G434200 chr1A 584941489 584945614 4125 True 7620.000000 7620 100.000000 1 4126 1 chr1A.!!$R1 4125
1 TraesCS1A01G434200 chr1A 584886318 584888649 2331 False 1082.666667 1437 98.916000 1 2223 3 chr1A.!!$F1 2222
2 TraesCS1A01G434200 chr1D 427912092 427918533 6441 False 675.166667 1380 90.376833 694 3800 6 chr1D.!!$F1 3106
3 TraesCS1A01G434200 chr1D 427940518 427942385 1867 True 657.333333 758 92.703333 694 2158 3 chr1D.!!$R1 1464
4 TraesCS1A01G434200 chr6D 14615523 14616166 643 False 1038.000000 1038 95.807000 9 650 1 chr6D.!!$F1 641
5 TraesCS1A01G434200 chr6D 464465369 464466003 634 False 1033.000000 1033 96.063000 20 652 1 chr6D.!!$F3 632
6 TraesCS1A01G434200 chr6D 87385640 87386291 651 False 1005.000000 1005 94.640000 6 652 1 chr6D.!!$F2 646
7 TraesCS1A01G434200 chrUn 83928408 83929051 643 True 1031.000000 1031 95.652000 15 654 1 chrUn.!!$R1 639
8 TraesCS1A01G434200 chr5B 680927231 680927875 644 False 1018.000000 1018 95.194000 9 651 1 chr5B.!!$F1 642
9 TraesCS1A01G434200 chr6B 117774036 117774687 651 True 1003.000000 1003 94.487000 15 664 1 chr6B.!!$R1 649
10 TraesCS1A01G434200 chr4D 47728707 47729350 643 True 1002.000000 1002 94.737000 9 652 1 chr4D.!!$R1 643
11 TraesCS1A01G434200 chr7D 134196942 134197588 646 False 1000.000000 1000 94.599000 6 651 1 chr7D.!!$F1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 745 0.178953 AGCATGAAGTGGTGGGCTTT 60.179 50.0 0.0 0.0 37.12 3.51 F
1847 2684 0.034186 ATGCTTGATCCCCTTCGCAA 60.034 50.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2100 2937 1.086696 CAATCCGTCCATGTGACCAC 58.913 55.0 8.25 0.0 41.18 4.16 R
3717 7285 0.039618 AGACCCATTTGGCCATTCGT 59.960 50.0 6.09 0.0 37.83 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
700 704 0.391661 TGAGCGAAGAAGGCACATCC 60.392 55.000 0.00 0.00 0.00 3.51
728 735 4.219507 TCGAGAAGAGAAGAAGCATGAAGT 59.780 41.667 0.00 0.00 0.00 3.01
738 745 0.178953 AGCATGAAGTGGTGGGCTTT 60.179 50.000 0.00 0.00 37.12 3.51
741 748 2.298729 GCATGAAGTGGTGGGCTTTAAA 59.701 45.455 0.00 0.00 0.00 1.52
813 820 3.660111 GTGGTGAGCGTTGGTGGC 61.660 66.667 0.00 0.00 0.00 5.01
837 848 1.678970 CGCAGGGAAAGGGAAAGGG 60.679 63.158 0.00 0.00 0.00 3.95
844 855 1.550327 GAAAGGGAAAGGGAGCAAGG 58.450 55.000 0.00 0.00 0.00 3.61
846 857 1.158007 AAGGGAAAGGGAGCAAGGAA 58.842 50.000 0.00 0.00 0.00 3.36
847 858 0.701147 AGGGAAAGGGAGCAAGGAAG 59.299 55.000 0.00 0.00 0.00 3.46
848 859 0.698818 GGGAAAGGGAGCAAGGAAGA 59.301 55.000 0.00 0.00 0.00 2.87
849 860 1.075536 GGGAAAGGGAGCAAGGAAGAA 59.924 52.381 0.00 0.00 0.00 2.52
850 861 2.441410 GGAAAGGGAGCAAGGAAGAAG 58.559 52.381 0.00 0.00 0.00 2.85
851 862 2.441410 GAAAGGGAGCAAGGAAGAAGG 58.559 52.381 0.00 0.00 0.00 3.46
879 890 0.251653 ACGAACCCTAGCTCTGGTCA 60.252 55.000 7.49 0.00 32.40 4.02
881 892 1.562783 GAACCCTAGCTCTGGTCAGT 58.437 55.000 7.49 0.00 32.40 3.41
882 893 1.903183 GAACCCTAGCTCTGGTCAGTT 59.097 52.381 7.49 3.67 32.40 3.16
883 894 2.031495 ACCCTAGCTCTGGTCAGTTT 57.969 50.000 1.28 0.00 0.00 2.66
884 895 2.339769 ACCCTAGCTCTGGTCAGTTTT 58.660 47.619 1.28 0.00 0.00 2.43
885 896 2.303311 ACCCTAGCTCTGGTCAGTTTTC 59.697 50.000 1.28 0.00 0.00 2.29
886 897 2.569404 CCCTAGCTCTGGTCAGTTTTCT 59.431 50.000 0.00 0.00 0.00 2.52
888 899 2.557920 AGCTCTGGTCAGTTTTCTGG 57.442 50.000 0.00 0.00 46.94 3.86
889 900 1.771255 AGCTCTGGTCAGTTTTCTGGT 59.229 47.619 0.00 0.00 46.94 4.00
910 924 1.892474 CCTCTAGCTAGATCCACAGGC 59.108 57.143 23.48 0.00 0.00 4.85
911 925 2.591923 CTCTAGCTAGATCCACAGGCA 58.408 52.381 23.48 0.00 0.00 4.75
923 959 2.037136 ACAGGCAAGATGCGTCTGC 61.037 57.895 9.75 14.43 46.21 4.26
957 993 0.603975 GGCCAACTCACTCTGACACC 60.604 60.000 0.00 0.00 0.00 4.16
958 994 0.946221 GCCAACTCACTCTGACACCG 60.946 60.000 0.00 0.00 0.00 4.94
959 995 0.946221 CCAACTCACTCTGACACCGC 60.946 60.000 0.00 0.00 0.00 5.68
988 1024 1.680314 CCCTCCCTCTTTTGCAGGC 60.680 63.158 0.00 0.00 0.00 4.85
989 1025 1.075482 CCTCCCTCTTTTGCAGGCA 59.925 57.895 0.00 0.00 0.00 4.75
990 1026 0.964358 CCTCCCTCTTTTGCAGGCAG 60.964 60.000 0.00 0.00 0.00 4.85
991 1027 0.964358 CTCCCTCTTTTGCAGGCAGG 60.964 60.000 0.00 0.00 0.00 4.85
1839 2676 4.130118 CCACTACTAACATGCTTGATCCC 58.870 47.826 6.60 0.00 0.00 3.85
1840 2677 4.130118 CACTACTAACATGCTTGATCCCC 58.870 47.826 6.60 0.00 0.00 4.81
1841 2678 4.040755 ACTACTAACATGCTTGATCCCCT 58.959 43.478 6.60 0.00 0.00 4.79
1842 2679 4.475016 ACTACTAACATGCTTGATCCCCTT 59.525 41.667 6.60 0.00 0.00 3.95
1843 2680 3.891049 ACTAACATGCTTGATCCCCTTC 58.109 45.455 6.60 0.00 0.00 3.46
1844 2681 1.755179 AACATGCTTGATCCCCTTCG 58.245 50.000 6.60 0.00 0.00 3.79
1845 2682 0.749454 ACATGCTTGATCCCCTTCGC 60.749 55.000 6.60 0.00 0.00 4.70
1846 2683 0.749091 CATGCTTGATCCCCTTCGCA 60.749 55.000 0.00 0.00 0.00 5.10
1847 2684 0.034186 ATGCTTGATCCCCTTCGCAA 60.034 50.000 0.00 0.00 0.00 4.85
1848 2685 0.251121 TGCTTGATCCCCTTCGCAAA 60.251 50.000 0.00 0.00 0.00 3.68
1849 2686 0.887933 GCTTGATCCCCTTCGCAAAA 59.112 50.000 0.00 0.00 0.00 2.44
1850 2687 1.272212 GCTTGATCCCCTTCGCAAAAA 59.728 47.619 0.00 0.00 0.00 1.94
1986 2823 0.465287 AACACTGGCCTTTGCTTTGG 59.535 50.000 3.32 0.00 37.74 3.28
2096 2933 7.229228 TCGTGTTCAATGTGTGTTATATAGC 57.771 36.000 0.00 0.00 0.00 2.97
2100 2937 3.738791 TCAATGTGTGTTATATAGCGGCG 59.261 43.478 0.51 0.51 0.00 6.46
2106 2943 1.682323 TGTTATATAGCGGCGTGGTCA 59.318 47.619 9.37 0.00 0.00 4.02
2121 2958 2.098293 GTCACATGGACGGATTGGC 58.902 57.895 0.00 0.00 36.65 4.52
2186 3023 4.541973 TCTTGCTGCTCATCTACAAGAA 57.458 40.909 0.00 0.00 42.63 2.52
2244 3081 3.179925 TGATGCTCATCAACCAGCC 57.820 52.632 9.88 0.00 44.14 4.85
2279 3116 2.063015 AACACAGACCCCGATGCCAA 62.063 55.000 0.00 0.00 0.00 4.52
2425 3299 3.441295 GGGATCGTAGACCCCGTC 58.559 66.667 0.00 0.00 42.51 4.79
2430 3304 1.336125 GATCGTAGACCCCGTCGAATT 59.664 52.381 0.00 0.00 42.51 2.17
2464 3338 2.229792 GCTGAACTGTGTTGGATTCCA 58.770 47.619 0.00 0.00 0.00 3.53
2549 3423 1.774110 TGCAAGAACCAGGCTCAAAA 58.226 45.000 0.00 0.00 0.00 2.44
2551 3425 1.683385 GCAAGAACCAGGCTCAAAAGT 59.317 47.619 0.00 0.00 0.00 2.66
2560 3434 3.437049 CCAGGCTCAAAAGTACTTAGCAC 59.563 47.826 23.63 15.60 34.85 4.40
2568 3442 7.846592 GCTCAAAAGTACTTAGCACGATAATTC 59.153 37.037 19.46 0.00 33.38 2.17
2590 3464 5.465051 TCTCGTGAGAAGTGAAGAAGAATG 58.535 41.667 0.00 0.00 41.32 2.67
2591 3465 5.010112 TCTCGTGAGAAGTGAAGAAGAATGT 59.990 40.000 0.00 0.00 41.32 2.71
2618 3492 3.674997 TGATTTCTGGTGAGGCTGTAAC 58.325 45.455 0.00 0.00 0.00 2.50
2764 3638 7.808381 GCAAAGGAGGTACTTATTTGTTTCTTC 59.192 37.037 13.37 0.00 42.37 2.87
2776 3650 0.608308 GTTTCTTCCCCACCCTTCCG 60.608 60.000 0.00 0.00 0.00 4.30
2777 3651 2.420466 TTTCTTCCCCACCCTTCCGC 62.420 60.000 0.00 0.00 0.00 5.54
2790 3664 1.062587 CCTTCCGCGCTTGAATACTTG 59.937 52.381 5.56 0.00 0.00 3.16
2797 3671 4.103357 CGCGCTTGAATACTTGTAGTAGT 58.897 43.478 5.56 0.00 33.66 2.73
2815 3689 2.862541 AGTTCTGCAGTGTGCCAAATA 58.137 42.857 14.67 0.00 44.23 1.40
2846 3720 9.724839 TGTTACTTGTTTTTACTTGCTGTAATC 57.275 29.630 4.28 1.24 40.41 1.75
2847 3721 9.946165 GTTACTTGTTTTTACTTGCTGTAATCT 57.054 29.630 4.28 0.00 40.41 2.40
2848 3722 9.944663 TTACTTGTTTTTACTTGCTGTAATCTG 57.055 29.630 4.28 0.00 40.41 2.90
2849 3723 7.996385 ACTTGTTTTTACTTGCTGTAATCTGT 58.004 30.769 4.28 0.00 40.41 3.41
2850 3724 7.915397 ACTTGTTTTTACTTGCTGTAATCTGTG 59.085 33.333 4.28 0.00 40.41 3.66
2851 3725 7.328277 TGTTTTTACTTGCTGTAATCTGTGT 57.672 32.000 4.28 0.00 40.41 3.72
2852 3726 7.192913 TGTTTTTACTTGCTGTAATCTGTGTG 58.807 34.615 4.28 0.00 40.41 3.82
2853 3727 5.356882 TTTACTTGCTGTAATCTGTGTGC 57.643 39.130 4.28 0.00 40.41 4.57
2854 3728 2.849942 ACTTGCTGTAATCTGTGTGCA 58.150 42.857 0.00 0.00 0.00 4.57
2878 3752 1.134128 TGCACGGCAGATGGAATACAT 60.134 47.619 0.00 0.00 36.55 2.29
2880 3754 3.138304 GCACGGCAGATGGAATACATAA 58.862 45.455 0.00 0.00 40.72 1.90
2886 3760 7.334171 CACGGCAGATGGAATACATAAATATGA 59.666 37.037 7.40 0.00 40.72 2.15
2901 3775 9.645059 ACATAAATATGAAGTCCAGATACGATG 57.355 33.333 7.40 0.00 37.15 3.84
2919 3793 3.877508 CGATGAGGAATGGGAAAAGGTAC 59.122 47.826 0.00 0.00 0.00 3.34
2926 3800 6.322931 AGGAATGGGAAAAGGTACAAAATCT 58.677 36.000 0.00 0.00 0.00 2.40
2934 3808 2.738743 AGGTACAAAATCTGCCATGGG 58.261 47.619 15.13 0.00 0.00 4.00
2938 3812 1.203162 ACAAAATCTGCCATGGGTCCA 60.203 47.619 15.13 1.71 0.00 4.02
3043 3917 1.078567 CCTCAGACTGGAAGCTGCC 60.079 63.158 2.64 2.64 37.79 4.85
3084 3958 1.700368 CCTGGACCTGGAGAGGAGA 59.300 63.158 12.01 0.00 42.93 3.71
3085 3959 0.041833 CCTGGACCTGGAGAGGAGAA 59.958 60.000 12.01 0.00 42.93 2.87
3086 3960 1.484038 CTGGACCTGGAGAGGAGAAG 58.516 60.000 0.00 0.00 42.93 2.85
3087 3961 1.006519 CTGGACCTGGAGAGGAGAAGA 59.993 57.143 0.00 0.00 42.93 2.87
3136 4010 5.817816 AGGATATGTTCTAAGCCTTGAAACG 59.182 40.000 0.00 0.00 0.00 3.60
3145 4019 1.602605 CCTTGAAACGGTGGGGGTC 60.603 63.158 0.00 0.00 0.00 4.46
3176 4069 4.443621 CCTAGTAGGGCTAAGAAACTTGC 58.556 47.826 8.50 0.00 0.00 4.01
3236 4129 0.179020 TTGCTGTGACAAGGAGGGTG 60.179 55.000 0.00 0.00 0.00 4.61
3238 4131 1.302832 CTGTGACAAGGAGGGTGCC 60.303 63.158 0.00 0.00 0.00 5.01
3239 4132 1.770110 TGTGACAAGGAGGGTGCCT 60.770 57.895 0.00 0.00 40.93 4.75
3240 4133 0.472925 TGTGACAAGGAGGGTGCCTA 60.473 55.000 0.00 0.00 37.26 3.93
3241 4134 0.250513 GTGACAAGGAGGGTGCCTAG 59.749 60.000 0.00 0.00 37.26 3.02
3253 4146 1.135333 GGTGCCTAGCTATATCTCGGC 59.865 57.143 11.24 11.24 43.10 5.54
3315 4208 6.072175 TGTTGACCTTTTAATGTACTCCATGC 60.072 38.462 0.00 0.00 32.82 4.06
3322 4215 0.624500 ATGTACTCCATGCCCACCCT 60.625 55.000 0.00 0.00 30.69 4.34
3323 4216 0.043485 TGTACTCCATGCCCACCCTA 59.957 55.000 0.00 0.00 0.00 3.53
3324 4217 1.209621 GTACTCCATGCCCACCCTAA 58.790 55.000 0.00 0.00 0.00 2.69
3325 4218 1.134189 GTACTCCATGCCCACCCTAAC 60.134 57.143 0.00 0.00 0.00 2.34
3326 4219 0.550147 ACTCCATGCCCACCCTAACT 60.550 55.000 0.00 0.00 0.00 2.24
3327 4220 0.625849 CTCCATGCCCACCCTAACTT 59.374 55.000 0.00 0.00 0.00 2.66
3328 4221 1.005924 CTCCATGCCCACCCTAACTTT 59.994 52.381 0.00 0.00 0.00 2.66
3329 4222 1.185315 CCATGCCCACCCTAACTTTG 58.815 55.000 0.00 0.00 0.00 2.77
3330 4223 1.272425 CCATGCCCACCCTAACTTTGA 60.272 52.381 0.00 0.00 0.00 2.69
3331 4224 2.094675 CATGCCCACCCTAACTTTGAG 58.905 52.381 0.00 0.00 0.00 3.02
3332 4225 1.145571 TGCCCACCCTAACTTTGAGT 58.854 50.000 0.00 0.00 0.00 3.41
3333 4226 1.497286 TGCCCACCCTAACTTTGAGTT 59.503 47.619 0.00 0.00 41.97 3.01
3334 4227 2.160205 GCCCACCCTAACTTTGAGTTC 58.840 52.381 0.00 0.00 39.51 3.01
3335 4228 2.488347 GCCCACCCTAACTTTGAGTTCA 60.488 50.000 0.00 0.00 39.51 3.18
3336 4229 3.146847 CCCACCCTAACTTTGAGTTCAC 58.853 50.000 0.00 0.00 39.51 3.18
3337 4230 3.146847 CCACCCTAACTTTGAGTTCACC 58.853 50.000 0.00 0.00 39.51 4.02
3338 4231 3.146847 CACCCTAACTTTGAGTTCACCC 58.853 50.000 0.00 0.00 39.51 4.61
3339 4232 3.053826 ACCCTAACTTTGAGTTCACCCT 58.946 45.455 0.00 0.00 39.51 4.34
3340 4233 4.041198 CACCCTAACTTTGAGTTCACCCTA 59.959 45.833 0.00 0.00 39.51 3.53
3341 4234 4.661709 ACCCTAACTTTGAGTTCACCCTAA 59.338 41.667 0.00 0.00 39.51 2.69
3342 4235 5.001874 CCCTAACTTTGAGTTCACCCTAAC 58.998 45.833 0.00 0.00 39.51 2.34
3343 4236 4.689345 CCTAACTTTGAGTTCACCCTAACG 59.311 45.833 0.00 0.00 39.51 3.18
3344 4237 4.411256 AACTTTGAGTTCACCCTAACGA 57.589 40.909 0.00 0.00 31.77 3.85
3345 4238 3.991367 ACTTTGAGTTCACCCTAACGAG 58.009 45.455 0.00 0.00 34.46 4.18
3346 4239 3.244112 ACTTTGAGTTCACCCTAACGAGG 60.244 47.826 0.00 0.00 43.33 4.63
3347 4240 2.005370 TGAGTTCACCCTAACGAGGT 57.995 50.000 0.00 0.00 41.95 3.85
3348 4241 2.322658 TGAGTTCACCCTAACGAGGTT 58.677 47.619 0.00 0.00 41.95 3.50
3349 4242 3.499338 TGAGTTCACCCTAACGAGGTTA 58.501 45.455 0.00 0.00 41.95 2.85
3354 4247 4.637483 TCACCCTAACGAGGTTATAACG 57.363 45.455 9.46 1.19 41.95 3.18
3373 4266 2.117137 CGGTATCTGAACAATCGGACG 58.883 52.381 0.00 0.00 43.63 4.79
3374 4267 2.470821 GGTATCTGAACAATCGGACGG 58.529 52.381 0.00 0.00 43.63 4.79
3375 4268 2.100252 GGTATCTGAACAATCGGACGGA 59.900 50.000 0.00 0.00 43.63 4.69
3376 4269 2.295253 ATCTGAACAATCGGACGGAC 57.705 50.000 0.00 0.00 43.63 4.79
3377 4270 0.963225 TCTGAACAATCGGACGGACA 59.037 50.000 0.00 0.00 36.01 4.02
3378 4271 1.341852 TCTGAACAATCGGACGGACAA 59.658 47.619 0.00 0.00 36.01 3.18
3379 4272 2.028476 TCTGAACAATCGGACGGACAAT 60.028 45.455 0.00 0.00 36.01 2.71
3380 4273 3.193903 TCTGAACAATCGGACGGACAATA 59.806 43.478 0.00 0.00 36.01 1.90
3381 4274 4.119862 CTGAACAATCGGACGGACAATAT 58.880 43.478 0.00 0.00 33.44 1.28
3382 4275 4.116961 TGAACAATCGGACGGACAATATC 58.883 43.478 0.00 0.00 0.00 1.63
3393 4286 4.876125 ACGGACAATATCTCTATGTGCTG 58.124 43.478 0.00 0.00 0.00 4.41
3423 4316 1.992557 ACCCATTCCTAGCTTGTTCCA 59.007 47.619 0.00 0.00 0.00 3.53
3428 4321 4.096984 CCATTCCTAGCTTGTTCCAATGTC 59.903 45.833 0.00 0.00 0.00 3.06
3445 4338 5.760253 CCAATGTCAGATGATACCAGTTACC 59.240 44.000 0.00 0.00 0.00 2.85
3461 4354 2.350895 CCAACCGGTGCTGATCCA 59.649 61.111 8.52 0.00 0.00 3.41
3474 4367 5.338365 GTGCTGATCCATGAATGAAGAAAC 58.662 41.667 0.00 0.00 0.00 2.78
3480 4373 4.151121 TCCATGAATGAAGAAACCAAGCA 58.849 39.130 0.00 0.00 0.00 3.91
3481 4374 4.588106 TCCATGAATGAAGAAACCAAGCAA 59.412 37.500 0.00 0.00 0.00 3.91
3482 4375 5.246656 TCCATGAATGAAGAAACCAAGCAAT 59.753 36.000 0.00 0.00 0.00 3.56
3483 4376 5.935789 CCATGAATGAAGAAACCAAGCAATT 59.064 36.000 0.00 0.00 0.00 2.32
3490 4383 7.106439 TGAAGAAACCAAGCAATTAAGTGAA 57.894 32.000 7.18 0.00 0.00 3.18
3499 4392 6.756074 CCAAGCAATTAAGTGAAACAGAAACA 59.244 34.615 7.18 0.00 41.43 2.83
3510 4403 6.980397 AGTGAAACAGAAACAAAATGTGGATC 59.020 34.615 0.00 0.00 41.43 3.36
3550 4443 2.693074 AGGGAAACGTGCATTTGACTTT 59.307 40.909 0.00 0.00 0.00 2.66
3588 4481 6.908870 TTTTCATCGTCCTGAATATGACTG 57.091 37.500 0.00 0.00 35.20 3.51
3589 4482 5.852282 TTCATCGTCCTGAATATGACTGA 57.148 39.130 0.00 0.00 30.34 3.41
3590 4483 6.410942 TTCATCGTCCTGAATATGACTGAT 57.589 37.500 0.00 0.00 30.34 2.90
3591 4484 7.524717 TTCATCGTCCTGAATATGACTGATA 57.475 36.000 0.00 0.00 30.34 2.15
3592 4485 7.150783 TCATCGTCCTGAATATGACTGATAG 57.849 40.000 0.00 0.00 0.00 2.08
3593 4486 6.717084 TCATCGTCCTGAATATGACTGATAGT 59.283 38.462 0.00 0.00 0.00 2.12
3594 4487 6.561737 TCGTCCTGAATATGACTGATAGTC 57.438 41.667 2.11 2.11 45.26 2.59
3619 4512 3.259374 CACTACTGGTGTCCATCTCAACT 59.741 47.826 0.00 0.00 40.79 3.16
3620 4513 2.847327 ACTGGTGTCCATCTCAACTG 57.153 50.000 0.00 0.00 30.82 3.16
3628 4521 7.497595 TGGTGTCCATCTCAACTGTATATTAC 58.502 38.462 0.00 0.00 0.00 1.89
3651 4544 9.933723 TTACTTACTTATAAAAGAGGCGAGTTT 57.066 29.630 4.30 0.00 36.50 2.66
3652 4545 8.843885 ACTTACTTATAAAAGAGGCGAGTTTT 57.156 30.769 4.30 1.23 36.50 2.43
3654 4547 9.756461 CTTACTTATAAAAGAGGCGAGTTTTTC 57.244 33.333 0.00 0.00 36.50 2.29
3655 4548 7.142306 ACTTATAAAAGAGGCGAGTTTTTCC 57.858 36.000 0.00 0.00 36.50 3.13
3656 4549 6.713450 ACTTATAAAAGAGGCGAGTTTTTCCA 59.287 34.615 0.00 0.00 36.50 3.53
3657 4550 7.393515 ACTTATAAAAGAGGCGAGTTTTTCCAT 59.606 33.333 0.00 0.00 36.50 3.41
3658 4551 3.923017 AAAGAGGCGAGTTTTTCCATG 57.077 42.857 0.00 0.00 0.00 3.66
3659 4552 2.568623 AGAGGCGAGTTTTTCCATGT 57.431 45.000 0.00 0.00 0.00 3.21
3661 4554 4.015872 AGAGGCGAGTTTTTCCATGTTA 57.984 40.909 0.00 0.00 0.00 2.41
3679 7242 7.707464 TCCATGTTAATAAATCGAGCTTTACGA 59.293 33.333 0.00 0.00 43.65 3.43
3680 7243 8.332464 CCATGTTAATAAATCGAGCTTTACGAA 58.668 33.333 0.00 0.00 42.80 3.85
3702 7270 4.979564 AAACGACTAGTAGCGGTTTTTC 57.020 40.909 15.25 0.00 32.92 2.29
3717 7285 4.794246 CGGTTTTTCTGCAAACGAGTTTAA 59.206 37.500 0.50 0.00 37.50 1.52
3730 7298 3.504520 ACGAGTTTAACGAATGGCCAAAT 59.495 39.130 10.96 0.29 34.70 2.32
3736 7304 0.039618 ACGAATGGCCAAATGGGTCT 59.960 50.000 10.96 0.00 43.75 3.85
3769 7337 2.429930 CACCAACTCGCTTCCCCA 59.570 61.111 0.00 0.00 0.00 4.96
3849 7417 2.985282 CTTGCGTGCCACCCACAT 60.985 61.111 0.00 0.00 44.91 3.21
3850 7418 2.981560 CTTGCGTGCCACCCACATC 61.982 63.158 0.00 0.00 44.91 3.06
3853 7421 3.055719 CGTGCCACCCACATCCAC 61.056 66.667 0.00 0.00 44.91 4.02
3854 7422 2.115052 GTGCCACCCACATCCACA 59.885 61.111 0.00 0.00 44.06 4.17
3855 7423 2.115052 TGCCACCCACATCCACAC 59.885 61.111 0.00 0.00 0.00 3.82
3856 7424 2.676471 GCCACCCACATCCACACC 60.676 66.667 0.00 0.00 0.00 4.16
3857 7425 2.035626 CCACCCACATCCACACCC 59.964 66.667 0.00 0.00 0.00 4.61
3858 7426 2.839609 CCACCCACATCCACACCCA 61.840 63.158 0.00 0.00 0.00 4.51
3859 7427 1.152599 CACCCACATCCACACCCAA 59.847 57.895 0.00 0.00 0.00 4.12
3860 7428 0.468958 CACCCACATCCACACCCAAA 60.469 55.000 0.00 0.00 0.00 3.28
3861 7429 0.178964 ACCCACATCCACACCCAAAG 60.179 55.000 0.00 0.00 0.00 2.77
3862 7430 0.899717 CCCACATCCACACCCAAAGG 60.900 60.000 0.00 0.00 40.04 3.11
3872 7440 4.024545 CCCAAAGGTACGGCCGGT 62.025 66.667 31.76 17.55 43.70 5.28
3873 7441 2.435410 CCAAAGGTACGGCCGGTC 60.435 66.667 31.76 20.97 43.70 4.79
3874 7442 2.812178 CAAAGGTACGGCCGGTCG 60.812 66.667 29.88 29.88 43.70 4.79
3875 7443 4.073200 AAAGGTACGGCCGGTCGG 62.073 66.667 34.31 15.10 43.70 4.79
3886 7454 4.493747 CGGTCGGTCGCCTCCTTC 62.494 72.222 0.00 0.00 0.00 3.46
3887 7455 4.144703 GGTCGGTCGCCTCCTTCC 62.145 72.222 0.00 0.00 0.00 3.46
3888 7456 4.144703 GTCGGTCGCCTCCTTCCC 62.145 72.222 0.00 0.00 0.00 3.97
3892 7460 4.821589 GTCGCCTCCTTCCCGCAG 62.822 72.222 0.00 0.00 0.00 5.18
3926 7494 4.595762 CCATGATTTGGCAATAGGGAAG 57.404 45.455 0.00 0.00 39.09 3.46
3927 7495 3.322828 CCATGATTTGGCAATAGGGAAGG 59.677 47.826 0.00 0.00 39.09 3.46
3928 7496 2.387757 TGATTTGGCAATAGGGAAGGC 58.612 47.619 0.00 0.00 0.00 4.35
3929 7497 1.338020 GATTTGGCAATAGGGAAGGCG 59.662 52.381 0.00 0.00 0.00 5.52
3930 7498 0.682855 TTTGGCAATAGGGAAGGCGG 60.683 55.000 0.00 0.00 0.00 6.13
3931 7499 1.567208 TTGGCAATAGGGAAGGCGGA 61.567 55.000 0.00 0.00 0.00 5.54
3932 7500 1.226262 GGCAATAGGGAAGGCGGAA 59.774 57.895 0.00 0.00 0.00 4.30
3933 7501 0.395173 GGCAATAGGGAAGGCGGAAA 60.395 55.000 0.00 0.00 0.00 3.13
3934 7502 1.470051 GCAATAGGGAAGGCGGAAAA 58.530 50.000 0.00 0.00 0.00 2.29
3935 7503 1.405463 GCAATAGGGAAGGCGGAAAAG 59.595 52.381 0.00 0.00 0.00 2.27
3936 7504 2.944094 GCAATAGGGAAGGCGGAAAAGA 60.944 50.000 0.00 0.00 0.00 2.52
3937 7505 2.683362 CAATAGGGAAGGCGGAAAAGAC 59.317 50.000 0.00 0.00 0.00 3.01
3938 7506 1.354101 TAGGGAAGGCGGAAAAGACA 58.646 50.000 0.00 0.00 0.00 3.41
3939 7507 0.476771 AGGGAAGGCGGAAAAGACAA 59.523 50.000 0.00 0.00 0.00 3.18
3940 7508 1.075536 AGGGAAGGCGGAAAAGACAAT 59.924 47.619 0.00 0.00 0.00 2.71
3941 7509 1.202348 GGGAAGGCGGAAAAGACAATG 59.798 52.381 0.00 0.00 0.00 2.82
3942 7510 2.159382 GGAAGGCGGAAAAGACAATGA 58.841 47.619 0.00 0.00 0.00 2.57
3943 7511 2.556622 GGAAGGCGGAAAAGACAATGAA 59.443 45.455 0.00 0.00 0.00 2.57
3944 7512 3.565516 GAAGGCGGAAAAGACAATGAAC 58.434 45.455 0.00 0.00 0.00 3.18
3945 7513 2.582052 AGGCGGAAAAGACAATGAACA 58.418 42.857 0.00 0.00 0.00 3.18
3946 7514 3.157087 AGGCGGAAAAGACAATGAACAT 58.843 40.909 0.00 0.00 0.00 2.71
3947 7515 3.573967 AGGCGGAAAAGACAATGAACATT 59.426 39.130 0.00 0.00 0.00 2.71
3948 7516 4.039124 AGGCGGAAAAGACAATGAACATTT 59.961 37.500 0.00 0.00 0.00 2.32
3949 7517 4.749598 GGCGGAAAAGACAATGAACATTTT 59.250 37.500 0.00 0.00 0.00 1.82
3950 7518 5.236263 GGCGGAAAAGACAATGAACATTTTT 59.764 36.000 0.00 0.00 0.00 1.94
3979 7547 6.566079 AATGATCATACAAAGAGGAGTCCA 57.434 37.500 12.86 0.00 0.00 4.02
3980 7548 6.566079 ATGATCATACAAAGAGGAGTCCAA 57.434 37.500 12.86 0.00 0.00 3.53
3981 7549 5.982356 TGATCATACAAAGAGGAGTCCAAG 58.018 41.667 12.86 0.00 0.00 3.61
3982 7550 5.721480 TGATCATACAAAGAGGAGTCCAAGA 59.279 40.000 12.86 0.00 0.00 3.02
3983 7551 6.385176 TGATCATACAAAGAGGAGTCCAAGAT 59.615 38.462 12.86 0.00 0.00 2.40
3984 7552 7.565029 TGATCATACAAAGAGGAGTCCAAGATA 59.435 37.037 12.86 0.00 0.00 1.98
3985 7553 7.353414 TCATACAAAGAGGAGTCCAAGATAG 57.647 40.000 12.86 0.00 0.00 2.08
3986 7554 6.897966 TCATACAAAGAGGAGTCCAAGATAGT 59.102 38.462 12.86 5.26 0.00 2.12
3987 7555 8.059461 TCATACAAAGAGGAGTCCAAGATAGTA 58.941 37.037 12.86 7.33 0.00 1.82
3988 7556 8.865090 CATACAAAGAGGAGTCCAAGATAGTAT 58.135 37.037 12.86 9.24 0.00 2.12
3989 7557 7.118496 ACAAAGAGGAGTCCAAGATAGTATG 57.882 40.000 12.86 0.53 0.00 2.39
3990 7558 6.670027 ACAAAGAGGAGTCCAAGATAGTATGT 59.330 38.462 12.86 1.13 0.00 2.29
3991 7559 7.181125 ACAAAGAGGAGTCCAAGATAGTATGTT 59.819 37.037 12.86 0.00 0.00 2.71
3992 7560 7.741554 AAGAGGAGTCCAAGATAGTATGTTT 57.258 36.000 12.86 0.00 0.00 2.83
3993 7561 7.741554 AGAGGAGTCCAAGATAGTATGTTTT 57.258 36.000 12.86 0.00 0.00 2.43
3994 7562 7.787028 AGAGGAGTCCAAGATAGTATGTTTTC 58.213 38.462 12.86 0.00 0.00 2.29
3995 7563 7.621683 AGAGGAGTCCAAGATAGTATGTTTTCT 59.378 37.037 12.86 0.00 0.00 2.52
3996 7564 8.152023 AGGAGTCCAAGATAGTATGTTTTCTT 57.848 34.615 12.86 0.00 0.00 2.52
3997 7565 8.261522 AGGAGTCCAAGATAGTATGTTTTCTTC 58.738 37.037 12.86 0.00 0.00 2.87
3998 7566 8.041323 GGAGTCCAAGATAGTATGTTTTCTTCA 58.959 37.037 3.60 0.00 0.00 3.02
3999 7567 9.436957 GAGTCCAAGATAGTATGTTTTCTTCAA 57.563 33.333 0.00 0.00 0.00 2.69
4000 7568 9.965902 AGTCCAAGATAGTATGTTTTCTTCAAT 57.034 29.630 0.00 0.00 0.00 2.57
4034 7602 9.643693 ATTGTAGGCTTTTCATTAGTTTGAATG 57.356 29.630 0.00 0.00 35.64 2.67
4035 7603 8.177119 TGTAGGCTTTTCATTAGTTTGAATGT 57.823 30.769 0.00 0.00 37.92 2.71
4036 7604 8.081633 TGTAGGCTTTTCATTAGTTTGAATGTG 58.918 33.333 0.00 0.00 37.92 3.21
4037 7605 6.458210 AGGCTTTTCATTAGTTTGAATGTGG 58.542 36.000 0.00 0.00 37.92 4.17
4038 7606 5.120674 GGCTTTTCATTAGTTTGAATGTGGC 59.879 40.000 0.00 0.00 37.92 5.01
4039 7607 5.928264 GCTTTTCATTAGTTTGAATGTGGCT 59.072 36.000 0.00 0.00 37.92 4.75
4040 7608 6.089954 GCTTTTCATTAGTTTGAATGTGGCTC 59.910 38.462 0.00 0.00 37.92 4.70
4041 7609 6.899393 TTTCATTAGTTTGAATGTGGCTCT 57.101 33.333 0.00 0.00 37.92 4.09
4042 7610 6.899393 TTCATTAGTTTGAATGTGGCTCTT 57.101 33.333 0.00 0.00 37.92 2.85
4043 7611 7.994425 TTCATTAGTTTGAATGTGGCTCTTA 57.006 32.000 0.00 0.00 37.92 2.10
4044 7612 7.994425 TCATTAGTTTGAATGTGGCTCTTAA 57.006 32.000 0.00 0.00 37.92 1.85
4045 7613 8.579850 TCATTAGTTTGAATGTGGCTCTTAAT 57.420 30.769 0.00 0.00 37.92 1.40
4046 7614 9.023962 TCATTAGTTTGAATGTGGCTCTTAATT 57.976 29.630 0.00 0.00 37.92 1.40
4050 7618 7.260603 AGTTTGAATGTGGCTCTTAATTATGC 58.739 34.615 0.00 0.00 0.00 3.14
4051 7619 7.123247 AGTTTGAATGTGGCTCTTAATTATGCT 59.877 33.333 5.87 0.00 0.00 3.79
4052 7620 7.408756 TTGAATGTGGCTCTTAATTATGCTT 57.591 32.000 5.87 0.00 0.00 3.91
4053 7621 8.518430 TTGAATGTGGCTCTTAATTATGCTTA 57.482 30.769 5.87 0.00 0.00 3.09
4054 7622 8.518430 TGAATGTGGCTCTTAATTATGCTTAA 57.482 30.769 0.00 0.00 0.00 1.85
4055 7623 8.965819 TGAATGTGGCTCTTAATTATGCTTAAA 58.034 29.630 0.00 0.00 0.00 1.52
4056 7624 9.801873 GAATGTGGCTCTTAATTATGCTTAAAA 57.198 29.630 0.00 0.00 0.00 1.52
4057 7625 9.586435 AATGTGGCTCTTAATTATGCTTAAAAC 57.414 29.630 0.00 0.00 0.00 2.43
4058 7626 8.116651 TGTGGCTCTTAATTATGCTTAAAACA 57.883 30.769 0.00 0.00 0.00 2.83
4059 7627 8.026607 TGTGGCTCTTAATTATGCTTAAAACAC 58.973 33.333 0.00 0.00 0.00 3.32
4060 7628 8.026607 GTGGCTCTTAATTATGCTTAAAACACA 58.973 33.333 0.00 0.00 0.00 3.72
4061 7629 8.748412 TGGCTCTTAATTATGCTTAAAACACAT 58.252 29.630 0.00 0.00 0.00 3.21
4073 7641 8.627487 TGCTTAAAACACATAGAACAAAGTTG 57.373 30.769 0.00 0.00 0.00 3.16
4074 7642 8.462811 TGCTTAAAACACATAGAACAAAGTTGA 58.537 29.630 0.00 0.00 0.00 3.18
4075 7643 9.463443 GCTTAAAACACATAGAACAAAGTTGAT 57.537 29.630 0.00 0.00 0.00 2.57
4081 7649 9.520515 AACACATAGAACAAAGTTGATAATCCT 57.479 29.630 0.00 0.00 0.00 3.24
4090 7658 8.396272 ACAAAGTTGATAATCCTATATGGTGC 57.604 34.615 0.00 0.00 37.07 5.01
4091 7659 7.173218 ACAAAGTTGATAATCCTATATGGTGCG 59.827 37.037 0.00 0.00 37.07 5.34
4092 7660 5.178797 AGTTGATAATCCTATATGGTGCGC 58.821 41.667 0.00 0.00 37.07 6.09
4093 7661 5.046304 AGTTGATAATCCTATATGGTGCGCT 60.046 40.000 9.73 0.00 37.07 5.92
4094 7662 5.420725 TGATAATCCTATATGGTGCGCTT 57.579 39.130 9.73 0.00 37.07 4.68
4095 7663 5.804639 TGATAATCCTATATGGTGCGCTTT 58.195 37.500 9.73 0.00 37.07 3.51
4096 7664 5.874810 TGATAATCCTATATGGTGCGCTTTC 59.125 40.000 9.73 0.00 37.07 2.62
4097 7665 2.148916 TCCTATATGGTGCGCTTTCG 57.851 50.000 9.73 0.00 37.07 3.46
4109 7677 2.813779 CGCTTTCGCTTCTTGCTAAT 57.186 45.000 0.00 0.00 40.11 1.73
4110 7678 3.122937 CGCTTTCGCTTCTTGCTAATT 57.877 42.857 0.00 0.00 40.11 1.40
4111 7679 2.842485 CGCTTTCGCTTCTTGCTAATTG 59.158 45.455 0.00 0.00 40.11 2.32
4112 7680 3.667960 CGCTTTCGCTTCTTGCTAATTGT 60.668 43.478 0.00 0.00 40.11 2.71
4113 7681 3.605486 GCTTTCGCTTCTTGCTAATTGTG 59.395 43.478 0.00 0.00 40.11 3.33
4114 7682 4.787598 CTTTCGCTTCTTGCTAATTGTGT 58.212 39.130 0.00 0.00 40.11 3.72
4115 7683 5.616866 GCTTTCGCTTCTTGCTAATTGTGTA 60.617 40.000 0.00 0.00 40.11 2.90
4116 7684 5.933187 TTCGCTTCTTGCTAATTGTGTAA 57.067 34.783 0.00 0.00 40.11 2.41
4117 7685 5.933187 TCGCTTCTTGCTAATTGTGTAAA 57.067 34.783 0.00 0.00 40.11 2.01
4118 7686 6.494893 TCGCTTCTTGCTAATTGTGTAAAT 57.505 33.333 0.00 0.00 40.11 1.40
4119 7687 6.908825 TCGCTTCTTGCTAATTGTGTAAATT 58.091 32.000 0.00 0.00 40.11 1.82
4120 7688 7.367285 TCGCTTCTTGCTAATTGTGTAAATTT 58.633 30.769 0.00 0.00 40.11 1.82
4121 7689 7.865385 TCGCTTCTTGCTAATTGTGTAAATTTT 59.135 29.630 0.00 0.00 40.11 1.82
4122 7690 9.123709 CGCTTCTTGCTAATTGTGTAAATTTTA 57.876 29.630 0.00 0.00 40.11 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
672 676 5.689961 GTGCCTTCTTCGCTCAAAATAAAAA 59.310 36.000 0.00 0.00 0.00 1.94
673 677 5.219633 GTGCCTTCTTCGCTCAAAATAAAA 58.780 37.500 0.00 0.00 0.00 1.52
674 678 4.277174 TGTGCCTTCTTCGCTCAAAATAAA 59.723 37.500 0.00 0.00 0.00 1.40
675 679 3.818210 TGTGCCTTCTTCGCTCAAAATAA 59.182 39.130 0.00 0.00 0.00 1.40
676 680 3.407698 TGTGCCTTCTTCGCTCAAAATA 58.592 40.909 0.00 0.00 0.00 1.40
677 681 2.229792 TGTGCCTTCTTCGCTCAAAAT 58.770 42.857 0.00 0.00 0.00 1.82
678 682 1.674359 TGTGCCTTCTTCGCTCAAAA 58.326 45.000 0.00 0.00 0.00 2.44
679 683 1.806542 GATGTGCCTTCTTCGCTCAAA 59.193 47.619 0.00 0.00 33.84 2.69
680 684 1.442769 GATGTGCCTTCTTCGCTCAA 58.557 50.000 0.00 0.00 33.84 3.02
681 685 0.391661 GGATGTGCCTTCTTCGCTCA 60.392 55.000 0.00 0.00 34.55 4.26
682 686 2.388347 GGATGTGCCTTCTTCGCTC 58.612 57.895 0.00 0.00 0.00 5.03
683 687 4.625800 GGATGTGCCTTCTTCGCT 57.374 55.556 0.00 0.00 0.00 4.93
692 696 1.734465 CTTCTCGACAAAGGATGTGCC 59.266 52.381 0.00 0.00 44.12 5.01
700 704 4.302455 TGCTTCTTCTCTTCTCGACAAAG 58.698 43.478 0.00 0.00 0.00 2.77
728 735 2.109128 TCATCCACTTTAAAGCCCACCA 59.891 45.455 15.24 0.00 0.00 4.17
738 745 0.182537 CCGGCCCATCATCCACTTTA 59.817 55.000 0.00 0.00 0.00 1.85
741 748 2.692368 ACCGGCCCATCATCCACT 60.692 61.111 0.00 0.00 0.00 4.00
824 831 1.550327 CTTGCTCCCTTTCCCTTTCC 58.450 55.000 0.00 0.00 0.00 3.13
826 833 1.158007 TCCTTGCTCCCTTTCCCTTT 58.842 50.000 0.00 0.00 0.00 3.11
837 848 1.340502 CCCTTCCCTTCTTCCTTGCTC 60.341 57.143 0.00 0.00 0.00 4.26
844 855 1.448013 CGTCGCCCTTCCCTTCTTC 60.448 63.158 0.00 0.00 0.00 2.87
846 857 1.911766 TTCGTCGCCCTTCCCTTCT 60.912 57.895 0.00 0.00 0.00 2.85
847 858 1.740664 GTTCGTCGCCCTTCCCTTC 60.741 63.158 0.00 0.00 0.00 3.46
848 859 2.346365 GTTCGTCGCCCTTCCCTT 59.654 61.111 0.00 0.00 0.00 3.95
849 860 3.703127 GGTTCGTCGCCCTTCCCT 61.703 66.667 0.00 0.00 0.00 4.20
850 861 4.772687 GGGTTCGTCGCCCTTCCC 62.773 72.222 0.95 0.00 42.81 3.97
879 890 4.936802 TCTAGCTAGAGGACCAGAAAACT 58.063 43.478 19.72 0.00 0.00 2.66
881 892 4.896482 GGATCTAGCTAGAGGACCAGAAAA 59.104 45.833 26.64 1.37 35.50 2.29
882 893 4.079154 TGGATCTAGCTAGAGGACCAGAAA 60.079 45.833 27.96 15.19 35.50 2.52
883 894 3.463704 TGGATCTAGCTAGAGGACCAGAA 59.536 47.826 27.96 15.43 35.50 3.02
884 895 3.056832 TGGATCTAGCTAGAGGACCAGA 58.943 50.000 27.96 15.92 35.50 3.86
885 896 3.153919 GTGGATCTAGCTAGAGGACCAG 58.846 54.545 30.26 8.10 35.93 4.00
886 897 2.514160 TGTGGATCTAGCTAGAGGACCA 59.486 50.000 27.96 27.96 35.50 4.02
887 898 3.153919 CTGTGGATCTAGCTAGAGGACC 58.846 54.545 26.64 25.64 35.50 4.46
888 899 3.153919 CCTGTGGATCTAGCTAGAGGAC 58.846 54.545 26.64 21.13 32.41 3.85
889 900 2.489985 GCCTGTGGATCTAGCTAGAGGA 60.490 54.545 26.64 11.54 32.41 3.71
910 924 0.167470 CACCAAGCAGACGCATCTTG 59.833 55.000 0.00 0.00 42.27 3.02
911 925 1.580845 GCACCAAGCAGACGCATCTT 61.581 55.000 0.00 0.00 44.79 2.40
957 993 2.731374 GAGGGGAGATTCGGAGCG 59.269 66.667 0.00 0.00 0.00 5.03
958 994 2.512355 GGGAGGGGAGATTCGGAGC 61.512 68.421 0.00 0.00 0.00 4.70
959 995 0.830023 GAGGGAGGGGAGATTCGGAG 60.830 65.000 0.00 0.00 0.00 4.63
1850 2687 5.652014 TCCTCGGATCAAGCATGTTATTTTT 59.348 36.000 0.00 0.00 0.00 1.94
1851 2688 5.192927 TCCTCGGATCAAGCATGTTATTTT 58.807 37.500 0.00 0.00 0.00 1.82
1852 2689 4.780815 TCCTCGGATCAAGCATGTTATTT 58.219 39.130 0.00 0.00 0.00 1.40
1853 2690 4.422073 TCCTCGGATCAAGCATGTTATT 57.578 40.909 0.00 0.00 0.00 1.40
1854 2691 4.630644 ATCCTCGGATCAAGCATGTTAT 57.369 40.909 0.00 0.00 0.00 1.89
1986 2823 4.497507 GCCTTAGTCTGGTTTGTCAACAAC 60.498 45.833 0.00 0.00 35.28 3.32
2084 2921 1.409790 ACCACGCCGCTATATAACACA 59.590 47.619 0.00 0.00 0.00 3.72
2096 2933 3.118454 GTCCATGTGACCACGCCG 61.118 66.667 3.65 0.00 38.09 6.46
2100 2937 1.086696 CAATCCGTCCATGTGACCAC 58.913 55.000 8.25 0.00 41.18 4.16
2106 2943 1.386525 GCATGCCAATCCGTCCATGT 61.387 55.000 6.36 0.00 37.84 3.21
2121 2958 2.883574 CATAACAACAGGGCAAGCATG 58.116 47.619 0.00 0.00 0.00 4.06
2186 3023 7.217200 ACTTAGTGATTTACATGATACGGCAT 58.783 34.615 0.00 0.00 0.00 4.40
2244 3081 4.629634 TCTGTGTTTGCATATACCTTGTCG 59.370 41.667 1.85 0.00 0.00 4.35
2279 3116 7.176515 TCAAAACCATAACATACAGTTCAGCAT 59.823 33.333 0.00 0.00 41.64 3.79
2425 3299 4.803088 TCAGCAGGTTTTGTCAAAAATTCG 59.197 37.500 12.26 3.57 37.59 3.34
2430 3304 4.021544 ACAGTTCAGCAGGTTTTGTCAAAA 60.022 37.500 6.65 6.65 0.00 2.44
2560 3434 6.258899 TCTTCACTTCTCACGAGAATTATCG 58.741 40.000 20.20 20.20 45.40 2.92
2568 3442 5.226396 ACATTCTTCTTCACTTCTCACGAG 58.774 41.667 0.00 0.00 0.00 4.18
2590 3464 4.219288 AGCCTCACCAGAAATCATTCAAAC 59.781 41.667 0.00 0.00 38.06 2.93
2591 3465 4.219070 CAGCCTCACCAGAAATCATTCAAA 59.781 41.667 0.00 0.00 38.06 2.69
2686 3560 7.936847 ACACTCATGAAATACCTACAGAAAACA 59.063 33.333 0.00 0.00 0.00 2.83
2687 3561 8.230486 CACACTCATGAAATACCTACAGAAAAC 58.770 37.037 0.00 0.00 0.00 2.43
2776 3650 5.805994 AGAACTACTACAAGTATTCAAGCGC 59.194 40.000 0.00 0.00 29.08 5.92
2777 3651 6.237595 GCAGAACTACTACAAGTATTCAAGCG 60.238 42.308 9.69 0.00 29.08 4.68
2815 3689 9.301153 CAGCAAGTAAAAACAAGTAACAGAAAT 57.699 29.630 0.00 0.00 0.00 2.17
2835 3709 2.810274 AGTGCACACAGATTACAGCAAG 59.190 45.455 21.04 0.00 33.37 4.01
2852 3726 3.052082 ATCTGCCGTGCACAGTGC 61.052 61.111 19.37 19.37 45.29 4.40
2853 3727 2.683859 CCATCTGCCGTGCACAGTG 61.684 63.158 18.64 5.63 36.50 3.66
2854 3728 2.359107 CCATCTGCCGTGCACAGT 60.359 61.111 18.64 0.00 36.50 3.55
2862 3736 7.848223 TCATATTTATGTATTCCATCTGCCG 57.152 36.000 0.00 0.00 34.86 5.69
2878 3752 8.523658 CCTCATCGTATCTGGACTTCATATTTA 58.476 37.037 0.00 0.00 0.00 1.40
2880 3754 6.721668 TCCTCATCGTATCTGGACTTCATATT 59.278 38.462 0.00 0.00 0.00 1.28
2886 3760 4.039730 CCATTCCTCATCGTATCTGGACTT 59.960 45.833 0.00 0.00 0.00 3.01
2901 3775 6.437477 AGATTTTGTACCTTTTCCCATTCCTC 59.563 38.462 0.00 0.00 0.00 3.71
2919 3793 1.479323 CTGGACCCATGGCAGATTTTG 59.521 52.381 6.09 0.00 0.00 2.44
2926 3800 0.251297 CAACTTCTGGACCCATGGCA 60.251 55.000 6.09 0.00 0.00 4.92
3043 3917 2.639286 GTGCGTGTTGGCCTCTTG 59.361 61.111 3.32 0.00 0.00 3.02
3052 3926 4.579384 CAGGGGGTGGTGCGTGTT 62.579 66.667 0.00 0.00 0.00 3.32
3084 3958 3.055021 GGATTCTTCTCGAAAGGGGTCTT 60.055 47.826 7.27 0.00 34.79 3.01
3085 3959 2.502130 GGATTCTTCTCGAAAGGGGTCT 59.498 50.000 7.27 0.00 34.79 3.85
3086 3960 2.502130 AGGATTCTTCTCGAAAGGGGTC 59.498 50.000 7.27 4.48 34.79 4.46
3087 3961 2.237392 CAGGATTCTTCTCGAAAGGGGT 59.763 50.000 7.27 0.00 34.79 4.95
3116 3990 4.693566 CACCGTTTCAAGGCTTAGAACATA 59.306 41.667 18.87 3.35 0.00 2.29
3122 3996 1.165270 CCCACCGTTTCAAGGCTTAG 58.835 55.000 0.00 0.00 0.00 2.18
3136 4010 1.678970 GCTTGTCATGACCCCCACC 60.679 63.158 22.85 2.28 0.00 4.61
3238 4131 3.192422 AGCAACAGCCGAGATATAGCTAG 59.808 47.826 0.00 0.00 34.38 3.42
3239 4132 3.057245 CAGCAACAGCCGAGATATAGCTA 60.057 47.826 0.00 0.00 34.38 3.32
3240 4133 1.967066 AGCAACAGCCGAGATATAGCT 59.033 47.619 0.00 0.00 37.32 3.32
3241 4134 2.064762 CAGCAACAGCCGAGATATAGC 58.935 52.381 0.00 0.00 0.00 2.97
3253 4146 7.219917 TCAAAGTTTCGTTAATTTCAGCAACAG 59.780 33.333 0.00 0.00 0.00 3.16
3315 4208 3.146847 GTGAACTCAAAGTTAGGGTGGG 58.853 50.000 0.00 0.00 38.80 4.61
3322 4215 5.510179 CCTCGTTAGGGTGAACTCAAAGTTA 60.510 44.000 0.00 0.00 37.65 2.24
3323 4216 4.377897 CTCGTTAGGGTGAACTCAAAGTT 58.622 43.478 0.00 0.00 41.95 2.66
3324 4217 3.244112 CCTCGTTAGGGTGAACTCAAAGT 60.244 47.826 0.00 0.00 39.48 2.66
3325 4218 3.326747 CCTCGTTAGGGTGAACTCAAAG 58.673 50.000 0.00 0.00 39.48 2.77
3326 4219 3.135167 AACCTCGTTAGGGTGAACTCAAA 59.865 43.478 0.00 0.00 43.14 2.69
3327 4220 2.701951 AACCTCGTTAGGGTGAACTCAA 59.298 45.455 0.00 0.00 43.14 3.02
3328 4221 2.322658 AACCTCGTTAGGGTGAACTCA 58.677 47.619 0.00 0.00 43.14 3.41
3329 4222 4.732672 ATAACCTCGTTAGGGTGAACTC 57.267 45.455 0.00 0.00 45.00 3.01
3330 4223 5.393461 CGTTATAACCTCGTTAGGGTGAACT 60.393 44.000 10.01 0.00 45.00 3.01
3331 4224 4.800471 CGTTATAACCTCGTTAGGGTGAAC 59.200 45.833 10.01 0.00 45.00 3.18
3332 4225 4.142182 CCGTTATAACCTCGTTAGGGTGAA 60.142 45.833 10.01 0.00 45.00 3.18
3333 4226 3.381272 CCGTTATAACCTCGTTAGGGTGA 59.619 47.826 10.01 0.00 45.00 4.02
3334 4227 3.131046 ACCGTTATAACCTCGTTAGGGTG 59.869 47.826 10.01 0.00 45.00 4.61
3338 4231 7.194607 TCAGATACCGTTATAACCTCGTTAG 57.805 40.000 10.01 0.00 31.29 2.34
3339 4232 7.066887 TGTTCAGATACCGTTATAACCTCGTTA 59.933 37.037 10.01 0.00 32.36 3.18
3340 4233 6.127647 TGTTCAGATACCGTTATAACCTCGTT 60.128 38.462 10.01 0.00 0.00 3.85
3341 4234 5.357878 TGTTCAGATACCGTTATAACCTCGT 59.642 40.000 10.01 6.47 0.00 4.18
3342 4235 5.824429 TGTTCAGATACCGTTATAACCTCG 58.176 41.667 10.01 0.00 0.00 4.63
3343 4236 7.114529 CGATTGTTCAGATACCGTTATAACCTC 59.885 40.741 10.01 2.73 0.00 3.85
3344 4237 6.921857 CGATTGTTCAGATACCGTTATAACCT 59.078 38.462 10.01 0.00 0.00 3.50
3345 4238 6.145048 CCGATTGTTCAGATACCGTTATAACC 59.855 42.308 10.01 0.00 0.00 2.85
3346 4239 6.919662 TCCGATTGTTCAGATACCGTTATAAC 59.080 38.462 5.47 5.47 0.00 1.89
3347 4240 6.919662 GTCCGATTGTTCAGATACCGTTATAA 59.080 38.462 0.00 0.00 0.00 0.98
3348 4241 6.441274 GTCCGATTGTTCAGATACCGTTATA 58.559 40.000 0.00 0.00 0.00 0.98
3349 4242 5.287226 GTCCGATTGTTCAGATACCGTTAT 58.713 41.667 0.00 0.00 0.00 1.89
3354 4247 2.100252 TCCGTCCGATTGTTCAGATACC 59.900 50.000 0.00 0.00 0.00 2.73
3373 4266 5.474578 TCCAGCACATAGAGATATTGTCC 57.525 43.478 0.00 0.00 0.00 4.02
3374 4267 4.928615 GCTCCAGCACATAGAGATATTGTC 59.071 45.833 0.00 0.00 41.59 3.18
3375 4268 4.592351 AGCTCCAGCACATAGAGATATTGT 59.408 41.667 0.48 0.00 45.16 2.71
3376 4269 5.149973 AGCTCCAGCACATAGAGATATTG 57.850 43.478 0.48 0.00 45.16 1.90
3377 4270 5.186797 GGTAGCTCCAGCACATAGAGATATT 59.813 44.000 0.48 0.00 45.16 1.28
3378 4271 4.709397 GGTAGCTCCAGCACATAGAGATAT 59.291 45.833 0.48 0.00 45.16 1.63
3379 4272 4.082845 GGTAGCTCCAGCACATAGAGATA 58.917 47.826 0.48 0.00 45.16 1.98
3380 4273 2.896685 GGTAGCTCCAGCACATAGAGAT 59.103 50.000 0.48 0.00 45.16 2.75
3381 4274 2.311463 GGTAGCTCCAGCACATAGAGA 58.689 52.381 0.48 0.00 45.16 3.10
3382 4275 1.342819 GGGTAGCTCCAGCACATAGAG 59.657 57.143 0.48 0.00 45.16 2.43
3393 4286 0.988678 AGGAATGGGTGGGTAGCTCC 60.989 60.000 0.00 0.00 0.00 4.70
3423 4316 6.560003 TGGTAACTGGTATCATCTGACATT 57.440 37.500 0.00 0.00 37.61 2.71
3428 4321 4.119862 CGGTTGGTAACTGGTATCATCTG 58.880 47.826 0.00 0.00 34.07 2.90
3445 4338 0.392863 TCATGGATCAGCACCGGTTG 60.393 55.000 2.97 0.82 0.00 3.77
3454 4347 6.519679 TTGGTTTCTTCATTCATGGATCAG 57.480 37.500 0.00 0.00 0.00 2.90
3455 4348 5.105635 GCTTGGTTTCTTCATTCATGGATCA 60.106 40.000 0.00 0.00 0.00 2.92
3456 4349 5.105635 TGCTTGGTTTCTTCATTCATGGATC 60.106 40.000 0.00 0.00 0.00 3.36
3461 4354 8.370182 ACTTAATTGCTTGGTTTCTTCATTCAT 58.630 29.630 0.00 0.00 0.00 2.57
3474 4367 6.756074 TGTTTCTGTTTCACTTAATTGCTTGG 59.244 34.615 0.00 0.00 0.00 3.61
3481 4374 9.097257 CCACATTTTGTTTCTGTTTCACTTAAT 57.903 29.630 0.00 0.00 0.00 1.40
3482 4375 8.307483 TCCACATTTTGTTTCTGTTTCACTTAA 58.693 29.630 0.00 0.00 0.00 1.85
3483 4376 7.831753 TCCACATTTTGTTTCTGTTTCACTTA 58.168 30.769 0.00 0.00 0.00 2.24
3490 4383 4.582656 TCCGATCCACATTTTGTTTCTGTT 59.417 37.500 0.00 0.00 0.00 3.16
3499 4392 2.483014 TCGGTTCCGATCCACATTTT 57.517 45.000 10.00 0.00 33.26 1.82
3531 4424 3.049912 GGAAAGTCAAATGCACGTTTCC 58.950 45.455 0.00 0.00 37.02 3.13
3569 4462 6.918626 ACTATCAGTCATATTCAGGACGATG 58.081 40.000 0.00 0.00 40.40 3.84
3570 4463 7.151999 GACTATCAGTCATATTCAGGACGAT 57.848 40.000 1.46 0.00 44.45 3.73
3571 4464 6.561737 GACTATCAGTCATATTCAGGACGA 57.438 41.667 1.46 0.00 44.45 4.20
3584 4477 4.640789 CCAGTAGTGGTGACTATCAGTC 57.359 50.000 8.59 0.00 39.24 3.51
3598 4491 3.259374 CAGTTGAGATGGACACCAGTAGT 59.741 47.826 0.00 0.00 36.75 2.73
3599 4492 3.259374 ACAGTTGAGATGGACACCAGTAG 59.741 47.826 0.00 0.00 36.75 2.57
3604 4497 7.727181 AGTAATATACAGTTGAGATGGACACC 58.273 38.462 0.00 0.00 0.00 4.16
3628 4521 9.756461 GAAAAACTCGCCTCTTTTATAAGTAAG 57.244 33.333 0.00 0.00 32.98 2.34
3644 4537 7.694784 TCGATTTATTAACATGGAAAAACTCGC 59.305 33.333 0.00 0.00 0.00 5.03
3645 4538 9.210426 CTCGATTTATTAACATGGAAAAACTCG 57.790 33.333 0.00 1.22 0.00 4.18
3646 4539 9.010366 GCTCGATTTATTAACATGGAAAAACTC 57.990 33.333 0.00 0.00 0.00 3.01
3647 4540 8.739972 AGCTCGATTTATTAACATGGAAAAACT 58.260 29.630 0.00 0.00 0.00 2.66
3649 4542 9.921637 AAAGCTCGATTTATTAACATGGAAAAA 57.078 25.926 0.00 0.00 0.00 1.94
3651 4544 9.997482 GTAAAGCTCGATTTATTAACATGGAAA 57.003 29.630 0.00 0.00 0.00 3.13
3652 4545 8.332464 CGTAAAGCTCGATTTATTAACATGGAA 58.668 33.333 0.00 0.00 0.00 3.53
3654 4547 7.847487 TCGTAAAGCTCGATTTATTAACATGG 58.153 34.615 0.00 0.00 32.30 3.66
3655 4548 9.697250 TTTCGTAAAGCTCGATTTATTAACATG 57.303 29.630 0.00 0.00 37.18 3.21
3659 4552 9.253275 CGTTTTTCGTAAAGCTCGATTTATTAA 57.747 29.630 0.00 0.00 37.18 1.40
3661 4554 7.476492 GTCGTTTTTCGTAAAGCTCGATTTATT 59.524 33.333 11.74 0.00 40.80 1.40
3679 7242 5.525012 AGAAAAACCGCTACTAGTCGTTTTT 59.475 36.000 22.55 22.55 33.03 1.94
3680 7243 5.050567 CAGAAAAACCGCTACTAGTCGTTTT 60.051 40.000 0.00 7.79 0.00 2.43
3702 7270 3.906008 CCATTCGTTAAACTCGTTTGCAG 59.094 43.478 5.35 0.00 34.23 4.41
3717 7285 0.039618 AGACCCATTTGGCCATTCGT 59.960 50.000 6.09 0.00 37.83 3.85
3736 7304 2.195727 TGGTGGTCATAGCTTGATGGA 58.804 47.619 0.00 0.00 36.54 3.41
3739 7307 3.679917 CGAGTTGGTGGTCATAGCTTGAT 60.680 47.826 0.00 0.00 36.54 2.57
3782 7350 2.919494 CGGTGCCCAGAAAGTTGCC 61.919 63.158 0.00 0.00 0.00 4.52
3785 7353 1.898574 CAGCGGTGCCCAGAAAGTT 60.899 57.895 0.00 0.00 0.00 2.66
3832 7400 2.981560 GATGTGGGTGGCACGCAAG 61.982 63.158 34.65 0.00 42.80 4.01
3833 7401 2.983030 GATGTGGGTGGCACGCAA 60.983 61.111 34.65 24.72 42.80 4.85
3836 7404 3.055719 GTGGATGTGGGTGGCACG 61.056 66.667 12.17 0.00 0.00 5.34
3837 7405 2.115052 TGTGGATGTGGGTGGCAC 59.885 61.111 9.70 9.70 0.00 5.01
3838 7406 2.115052 GTGTGGATGTGGGTGGCA 59.885 61.111 0.00 0.00 0.00 4.92
3839 7407 2.676471 GGTGTGGATGTGGGTGGC 60.676 66.667 0.00 0.00 0.00 5.01
3840 7408 2.035626 GGGTGTGGATGTGGGTGG 59.964 66.667 0.00 0.00 0.00 4.61
3841 7409 0.468958 TTTGGGTGTGGATGTGGGTG 60.469 55.000 0.00 0.00 0.00 4.61
3842 7410 0.178964 CTTTGGGTGTGGATGTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
3843 7411 0.899717 CCTTTGGGTGTGGATGTGGG 60.900 60.000 0.00 0.00 0.00 4.61
3844 7412 0.178964 ACCTTTGGGTGTGGATGTGG 60.179 55.000 0.00 0.00 45.43 4.17
3845 7413 2.159382 GTACCTTTGGGTGTGGATGTG 58.841 52.381 0.00 0.00 46.75 3.21
3846 7414 1.271163 CGTACCTTTGGGTGTGGATGT 60.271 52.381 0.00 0.00 46.75 3.06
3847 7415 1.448985 CGTACCTTTGGGTGTGGATG 58.551 55.000 0.00 0.00 46.75 3.51
3848 7416 0.326927 CCGTACCTTTGGGTGTGGAT 59.673 55.000 0.00 0.00 46.75 3.41
3849 7417 1.756024 CCGTACCTTTGGGTGTGGA 59.244 57.895 0.00 0.00 46.75 4.02
3850 7418 1.969589 GCCGTACCTTTGGGTGTGG 60.970 63.158 0.00 1.23 46.75 4.17
3851 7419 1.969589 GGCCGTACCTTTGGGTGTG 60.970 63.158 0.00 0.00 46.75 3.82
3852 7420 2.433004 GGCCGTACCTTTGGGTGT 59.567 61.111 0.00 0.00 46.75 4.16
3853 7421 2.744709 CGGCCGTACCTTTGGGTG 60.745 66.667 19.50 0.00 46.75 4.61
3855 7423 3.963687 GACCGGCCGTACCTTTGGG 62.964 68.421 26.12 7.62 35.61 4.12
3856 7424 2.435410 GACCGGCCGTACCTTTGG 60.435 66.667 26.12 8.44 35.61 3.28
3857 7425 2.812178 CGACCGGCCGTACCTTTG 60.812 66.667 26.12 9.27 35.61 2.77
3858 7426 4.073200 CCGACCGGCCGTACCTTT 62.073 66.667 26.12 0.00 35.61 3.11
3869 7437 4.493747 GAAGGAGGCGACCGACCG 62.494 72.222 0.00 0.00 34.73 4.79
3870 7438 4.144703 GGAAGGAGGCGACCGACC 62.145 72.222 0.00 0.00 34.73 4.79
3871 7439 4.144703 GGGAAGGAGGCGACCGAC 62.145 72.222 0.00 0.00 34.73 4.79
3875 7443 4.821589 CTGCGGGAAGGAGGCGAC 62.822 72.222 0.00 0.00 34.34 5.19
3895 7463 2.764314 AAATCATGGCTCCGCGTGC 61.764 57.895 4.92 9.24 0.00 5.34
3896 7464 1.063006 CAAATCATGGCTCCGCGTG 59.937 57.895 4.92 0.00 0.00 5.34
3897 7465 2.114670 CCAAATCATGGCTCCGCGT 61.115 57.895 4.92 0.00 43.80 6.01
3898 7466 2.717485 CCAAATCATGGCTCCGCG 59.283 61.111 0.00 0.00 43.80 6.46
3906 7474 3.243975 GCCTTCCCTATTGCCAAATCATG 60.244 47.826 0.00 0.00 0.00 3.07
3907 7475 2.967887 GCCTTCCCTATTGCCAAATCAT 59.032 45.455 0.00 0.00 0.00 2.45
3908 7476 2.387757 GCCTTCCCTATTGCCAAATCA 58.612 47.619 0.00 0.00 0.00 2.57
3909 7477 1.338020 CGCCTTCCCTATTGCCAAATC 59.662 52.381 0.00 0.00 0.00 2.17
3910 7478 1.402787 CGCCTTCCCTATTGCCAAAT 58.597 50.000 0.00 0.00 0.00 2.32
3911 7479 0.682855 CCGCCTTCCCTATTGCCAAA 60.683 55.000 0.00 0.00 0.00 3.28
3912 7480 1.077068 CCGCCTTCCCTATTGCCAA 60.077 57.895 0.00 0.00 0.00 4.52
3913 7481 1.567208 TTCCGCCTTCCCTATTGCCA 61.567 55.000 0.00 0.00 0.00 4.92
3914 7482 0.395173 TTTCCGCCTTCCCTATTGCC 60.395 55.000 0.00 0.00 0.00 4.52
3915 7483 1.405463 CTTTTCCGCCTTCCCTATTGC 59.595 52.381 0.00 0.00 0.00 3.56
3916 7484 2.683362 GTCTTTTCCGCCTTCCCTATTG 59.317 50.000 0.00 0.00 0.00 1.90
3917 7485 2.307686 TGTCTTTTCCGCCTTCCCTATT 59.692 45.455 0.00 0.00 0.00 1.73
3918 7486 1.913419 TGTCTTTTCCGCCTTCCCTAT 59.087 47.619 0.00 0.00 0.00 2.57
3919 7487 1.354101 TGTCTTTTCCGCCTTCCCTA 58.646 50.000 0.00 0.00 0.00 3.53
3920 7488 0.476771 TTGTCTTTTCCGCCTTCCCT 59.523 50.000 0.00 0.00 0.00 4.20
3921 7489 1.202348 CATTGTCTTTTCCGCCTTCCC 59.798 52.381 0.00 0.00 0.00 3.97
3922 7490 2.159382 TCATTGTCTTTTCCGCCTTCC 58.841 47.619 0.00 0.00 0.00 3.46
3923 7491 3.004315 TGTTCATTGTCTTTTCCGCCTTC 59.996 43.478 0.00 0.00 0.00 3.46
3924 7492 2.955660 TGTTCATTGTCTTTTCCGCCTT 59.044 40.909 0.00 0.00 0.00 4.35
3925 7493 2.582052 TGTTCATTGTCTTTTCCGCCT 58.418 42.857 0.00 0.00 0.00 5.52
3926 7494 3.575965 ATGTTCATTGTCTTTTCCGCC 57.424 42.857 0.00 0.00 0.00 6.13
3927 7495 5.905480 AAAATGTTCATTGTCTTTTCCGC 57.095 34.783 0.00 0.00 0.00 5.54
3953 7521 9.379770 TGGACTCCTCTTTGTATGATCATTATA 57.620 33.333 14.65 0.00 0.00 0.98
3954 7522 8.267620 TGGACTCCTCTTTGTATGATCATTAT 57.732 34.615 14.65 0.00 0.00 1.28
3955 7523 7.675161 TGGACTCCTCTTTGTATGATCATTA 57.325 36.000 14.65 0.59 0.00 1.90
3956 7524 6.566079 TGGACTCCTCTTTGTATGATCATT 57.434 37.500 14.65 0.00 0.00 2.57
3957 7525 6.385176 TCTTGGACTCCTCTTTGTATGATCAT 59.615 38.462 13.81 13.81 0.00 2.45
3958 7526 5.721480 TCTTGGACTCCTCTTTGTATGATCA 59.279 40.000 0.00 0.00 0.00 2.92
3959 7527 6.227298 TCTTGGACTCCTCTTTGTATGATC 57.773 41.667 0.00 0.00 0.00 2.92
3960 7528 6.821616 ATCTTGGACTCCTCTTTGTATGAT 57.178 37.500 0.00 0.00 0.00 2.45
3961 7529 6.897966 ACTATCTTGGACTCCTCTTTGTATGA 59.102 38.462 0.00 0.00 0.00 2.15
3962 7530 7.118496 ACTATCTTGGACTCCTCTTTGTATG 57.882 40.000 0.00 0.00 0.00 2.39
3963 7531 8.865090 CATACTATCTTGGACTCCTCTTTGTAT 58.135 37.037 0.00 0.00 0.00 2.29
3964 7532 7.839705 ACATACTATCTTGGACTCCTCTTTGTA 59.160 37.037 0.00 0.00 0.00 2.41
3965 7533 6.670027 ACATACTATCTTGGACTCCTCTTTGT 59.330 38.462 0.00 0.00 0.00 2.83
3966 7534 7.118496 ACATACTATCTTGGACTCCTCTTTG 57.882 40.000 0.00 0.00 0.00 2.77
3967 7535 7.741554 AACATACTATCTTGGACTCCTCTTT 57.258 36.000 0.00 0.00 0.00 2.52
3968 7536 7.741554 AAACATACTATCTTGGACTCCTCTT 57.258 36.000 0.00 0.00 0.00 2.85
3969 7537 7.621683 AGAAAACATACTATCTTGGACTCCTCT 59.378 37.037 0.00 0.00 0.00 3.69
3970 7538 7.787028 AGAAAACATACTATCTTGGACTCCTC 58.213 38.462 0.00 0.00 0.00 3.71
3971 7539 7.741554 AGAAAACATACTATCTTGGACTCCT 57.258 36.000 0.00 0.00 0.00 3.69
3972 7540 8.041323 TGAAGAAAACATACTATCTTGGACTCC 58.959 37.037 0.00 0.00 32.54 3.85
3973 7541 9.436957 TTGAAGAAAACATACTATCTTGGACTC 57.563 33.333 0.00 0.00 32.54 3.36
3974 7542 9.965902 ATTGAAGAAAACATACTATCTTGGACT 57.034 29.630 0.00 0.00 32.54 3.85
4008 7576 9.643693 CATTCAAACTAATGAAAAGCCTACAAT 57.356 29.630 0.00 0.00 42.22 2.71
4009 7577 8.637986 ACATTCAAACTAATGAAAAGCCTACAA 58.362 29.630 3.73 0.00 42.22 2.41
4010 7578 8.081633 CACATTCAAACTAATGAAAAGCCTACA 58.918 33.333 3.73 0.00 42.22 2.74
4011 7579 7.542130 CCACATTCAAACTAATGAAAAGCCTAC 59.458 37.037 3.73 0.00 42.22 3.18
4012 7580 7.601856 CCACATTCAAACTAATGAAAAGCCTA 58.398 34.615 3.73 0.00 42.22 3.93
4013 7581 6.458210 CCACATTCAAACTAATGAAAAGCCT 58.542 36.000 3.73 0.00 42.22 4.58
4014 7582 5.120674 GCCACATTCAAACTAATGAAAAGCC 59.879 40.000 3.73 0.00 42.22 4.35
4015 7583 5.928264 AGCCACATTCAAACTAATGAAAAGC 59.072 36.000 3.73 1.68 42.22 3.51
4016 7584 7.373493 AGAGCCACATTCAAACTAATGAAAAG 58.627 34.615 3.73 0.00 42.22 2.27
4017 7585 7.288810 AGAGCCACATTCAAACTAATGAAAA 57.711 32.000 3.73 0.00 42.22 2.29
4018 7586 6.899393 AGAGCCACATTCAAACTAATGAAA 57.101 33.333 3.73 0.00 42.22 2.69
4019 7587 6.899393 AAGAGCCACATTCAAACTAATGAA 57.101 33.333 3.73 0.00 43.03 2.57
4020 7588 7.994425 TTAAGAGCCACATTCAAACTAATGA 57.006 32.000 3.73 0.00 38.84 2.57
4024 7592 8.405531 GCATAATTAAGAGCCACATTCAAACTA 58.594 33.333 0.00 0.00 0.00 2.24
4025 7593 7.123247 AGCATAATTAAGAGCCACATTCAAACT 59.877 33.333 0.00 0.00 0.00 2.66
4026 7594 7.260603 AGCATAATTAAGAGCCACATTCAAAC 58.739 34.615 0.00 0.00 0.00 2.93
4027 7595 7.408756 AGCATAATTAAGAGCCACATTCAAA 57.591 32.000 0.00 0.00 0.00 2.69
4028 7596 7.408756 AAGCATAATTAAGAGCCACATTCAA 57.591 32.000 0.00 0.00 0.00 2.69
4029 7597 8.518430 TTAAGCATAATTAAGAGCCACATTCA 57.482 30.769 0.00 0.00 0.00 2.57
4030 7598 9.801873 TTTTAAGCATAATTAAGAGCCACATTC 57.198 29.630 0.00 0.00 0.00 2.67
4031 7599 9.586435 GTTTTAAGCATAATTAAGAGCCACATT 57.414 29.630 0.00 0.00 0.00 2.71
4032 7600 8.748412 TGTTTTAAGCATAATTAAGAGCCACAT 58.252 29.630 0.00 0.00 0.00 3.21
4033 7601 8.026607 GTGTTTTAAGCATAATTAAGAGCCACA 58.973 33.333 0.00 0.00 0.00 4.17
4034 7602 8.026607 TGTGTTTTAAGCATAATTAAGAGCCAC 58.973 33.333 0.00 0.00 0.00 5.01
4035 7603 8.116651 TGTGTTTTAAGCATAATTAAGAGCCA 57.883 30.769 0.00 0.00 0.00 4.75
4047 7615 9.248291 CAACTTTGTTCTATGTGTTTTAAGCAT 57.752 29.630 0.00 0.00 0.00 3.79
4048 7616 8.462811 TCAACTTTGTTCTATGTGTTTTAAGCA 58.537 29.630 0.00 0.00 0.00 3.91
4049 7617 8.850454 TCAACTTTGTTCTATGTGTTTTAAGC 57.150 30.769 0.00 0.00 0.00 3.09
4055 7623 9.520515 AGGATTATCAACTTTGTTCTATGTGTT 57.479 29.630 0.00 0.00 0.00 3.32
4064 7632 8.850156 GCACCATATAGGATTATCAACTTTGTT 58.150 33.333 0.00 0.00 41.22 2.83
4065 7633 7.173218 CGCACCATATAGGATTATCAACTTTGT 59.827 37.037 0.00 0.00 41.22 2.83
4066 7634 7.521529 CGCACCATATAGGATTATCAACTTTG 58.478 38.462 0.00 0.00 41.22 2.77
4067 7635 6.149474 GCGCACCATATAGGATTATCAACTTT 59.851 38.462 0.30 0.00 41.22 2.66
4068 7636 5.643777 GCGCACCATATAGGATTATCAACTT 59.356 40.000 0.30 0.00 41.22 2.66
4069 7637 5.046304 AGCGCACCATATAGGATTATCAACT 60.046 40.000 11.47 0.00 41.22 3.16
4070 7638 5.178797 AGCGCACCATATAGGATTATCAAC 58.821 41.667 11.47 0.00 41.22 3.18
4071 7639 5.420725 AGCGCACCATATAGGATTATCAA 57.579 39.130 11.47 0.00 41.22 2.57
4072 7640 5.420725 AAGCGCACCATATAGGATTATCA 57.579 39.130 11.47 0.00 41.22 2.15
4073 7641 5.005779 CGAAAGCGCACCATATAGGATTATC 59.994 44.000 11.47 0.00 41.22 1.75
4074 7642 4.870426 CGAAAGCGCACCATATAGGATTAT 59.130 41.667 11.47 0.00 41.22 1.28
4075 7643 4.242475 CGAAAGCGCACCATATAGGATTA 58.758 43.478 11.47 0.00 41.22 1.75
4076 7644 3.067106 CGAAAGCGCACCATATAGGATT 58.933 45.455 11.47 0.00 41.22 3.01
4077 7645 2.688507 CGAAAGCGCACCATATAGGAT 58.311 47.619 11.47 0.00 41.22 3.24
4078 7646 2.148916 CGAAAGCGCACCATATAGGA 57.851 50.000 11.47 0.00 41.22 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.