Multiple sequence alignment - TraesCS1A01G432700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G432700 chr1A 100.000 2563 0 0 1 2563 584358549 584355987 0.000000e+00 4734
1 TraesCS1A01G432700 chr1D 87.751 1845 130 31 4 1800 486761678 486759882 0.000000e+00 2067
2 TraesCS1A01G432700 chr1D 90.909 495 22 5 2088 2563 486759644 486759154 0.000000e+00 643
3 TraesCS1A01G432700 chr1D 79.368 1013 132 38 902 1901 486858757 486857809 2.150000e-180 641
4 TraesCS1A01G432700 chr1D 79.512 820 88 37 325 1107 396150301 396151077 6.330000e-141 510
5 TraesCS1A01G432700 chr1D 86.742 445 53 4 1616 2055 396180702 396181145 8.240000e-135 490
6 TraesCS1A01G432700 chr1D 84.324 370 45 7 1149 1507 396166703 396167070 1.460000e-92 350
7 TraesCS1A01G432700 chr1D 87.319 276 22 7 2218 2488 396181146 396181413 1.150000e-78 303
8 TraesCS1A01G432700 chr1D 91.667 192 14 1 1886 2075 486759884 486759693 5.440000e-67 265
9 TraesCS1A01G432700 chr1B 83.420 1924 212 61 4 1886 677909549 677907692 0.000000e+00 1687
10 TraesCS1A01G432700 chr1B 78.852 993 123 46 940 1905 677988035 677987103 7.900000e-165 590
11 TraesCS1A01G432700 chr1B 98.718 78 1 0 442 519 677909164 677909087 3.440000e-29 139
12 TraesCS1A01G432700 chr2B 80.494 851 117 31 894 1734 363485108 363484297 7.840000e-170 606
13 TraesCS1A01G432700 chr2A 80.116 860 126 25 884 1734 372373552 372374375 1.310000e-167 599
14 TraesCS1A01G432700 chr2D 80.117 855 124 25 888 1734 298839708 298840524 1.700000e-166 595


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G432700 chr1A 584355987 584358549 2562 True 4734.000000 4734 100.0000 1 2563 1 chr1A.!!$R1 2562
1 TraesCS1A01G432700 chr1D 486759154 486761678 2524 True 991.666667 2067 90.1090 4 2563 3 chr1D.!!$R2 2559
2 TraesCS1A01G432700 chr1D 486857809 486858757 948 True 641.000000 641 79.3680 902 1901 1 chr1D.!!$R1 999
3 TraesCS1A01G432700 chr1D 396150301 396151077 776 False 510.000000 510 79.5120 325 1107 1 chr1D.!!$F1 782
4 TraesCS1A01G432700 chr1D 396180702 396181413 711 False 396.500000 490 87.0305 1616 2488 2 chr1D.!!$F3 872
5 TraesCS1A01G432700 chr1B 677907692 677909549 1857 True 913.000000 1687 91.0690 4 1886 2 chr1B.!!$R2 1882
6 TraesCS1A01G432700 chr1B 677987103 677988035 932 True 590.000000 590 78.8520 940 1905 1 chr1B.!!$R1 965
7 TraesCS1A01G432700 chr2B 363484297 363485108 811 True 606.000000 606 80.4940 894 1734 1 chr2B.!!$R1 840
8 TraesCS1A01G432700 chr2A 372373552 372374375 823 False 599.000000 599 80.1160 884 1734 1 chr2A.!!$F1 850
9 TraesCS1A01G432700 chr2D 298839708 298840524 816 False 595.000000 595 80.1170 888 1734 1 chr2D.!!$F1 846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 225 0.539438 TTCCCTGGCAATTTGACGCT 60.539 50.000 0.0 0.0 0.0 5.07 F
263 278 1.362224 ATCCAGTGCCAGTACCAGTT 58.638 50.000 0.0 0.0 0.0 3.16 F
422 440 1.954994 AATCCCTCCCTCCCTCCCT 60.955 63.158 0.0 0.0 0.0 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1342 1432 0.175531 GCAGGAGAAGGACAGAGAGC 59.824 60.000 0.0 0.0 0.0 4.09 R
1501 1595 1.064946 CGGACGATCAGAGACTGCC 59.935 63.158 0.0 0.0 0.0 4.85 R
2080 2191 1.304464 CTTGCCCCTTCCCCTGTTC 60.304 63.158 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 119 8.109634 AGTAGTGATGTTCAAAGGGAATACAAT 58.890 33.333 0.00 0.00 37.93 2.71
216 225 0.539438 TTCCCTGGCAATTTGACGCT 60.539 50.000 0.00 0.00 0.00 5.07
244 253 4.751098 GCGTCATATATGGGTTTTCGGTTA 59.249 41.667 12.78 0.00 0.00 2.85
263 278 1.362224 ATCCAGTGCCAGTACCAGTT 58.638 50.000 0.00 0.00 0.00 3.16
266 281 2.910319 TCCAGTGCCAGTACCAGTTTAT 59.090 45.455 0.00 0.00 0.00 1.40
267 282 4.098155 TCCAGTGCCAGTACCAGTTTATA 58.902 43.478 0.00 0.00 0.00 0.98
268 283 4.719773 TCCAGTGCCAGTACCAGTTTATAT 59.280 41.667 0.00 0.00 0.00 0.86
271 286 6.482308 CCAGTGCCAGTACCAGTTTATATAAC 59.518 42.308 0.00 0.00 0.00 1.89
272 287 6.482308 CAGTGCCAGTACCAGTTTATATAACC 59.518 42.308 0.00 0.00 0.00 2.85
384 402 4.851252 CCCATCCTCCCCCAGGCT 62.851 72.222 0.00 0.00 43.08 4.58
422 440 1.954994 AATCCCTCCCTCCCTCCCT 60.955 63.158 0.00 0.00 0.00 4.20
426 444 4.548513 CTCCCTCCCTCCCTCCCG 62.549 77.778 0.00 0.00 0.00 5.14
605 655 2.794631 CGGTTTCTGTCAGGTGCAAAAC 60.795 50.000 0.00 3.07 0.00 2.43
608 658 4.261197 GGTTTCTGTCAGGTGCAAAACTAG 60.261 45.833 11.66 0.00 0.00 2.57
630 680 4.223923 AGGGATCGAGTCAAGTTTCAGATT 59.776 41.667 0.00 0.00 0.00 2.40
631 681 5.422331 AGGGATCGAGTCAAGTTTCAGATTA 59.578 40.000 0.00 0.00 0.00 1.75
632 682 5.520649 GGGATCGAGTCAAGTTTCAGATTAC 59.479 44.000 0.00 0.00 0.00 1.89
633 683 6.334202 GGATCGAGTCAAGTTTCAGATTACT 58.666 40.000 0.00 0.00 0.00 2.24
634 684 6.254589 GGATCGAGTCAAGTTTCAGATTACTG 59.745 42.308 0.00 0.00 44.66 2.74
673 733 4.860802 TGTTGGAATGACTGTATGGGAT 57.139 40.909 0.00 0.00 0.00 3.85
696 758 2.101917 GGGATTGGAATTGCATGTCTGG 59.898 50.000 0.00 0.00 0.00 3.86
748 817 5.013183 CCTCCTTCCCCGTAATTGAGATTAT 59.987 44.000 0.00 0.00 30.84 1.28
809 886 5.462729 GCAGTCTCATGTATCTGAACAGATG 59.537 44.000 22.55 10.94 46.80 2.90
871 948 6.516718 ACAGTATCAGTGCCATAGTTGTATC 58.483 40.000 0.00 0.00 0.00 2.24
876 953 5.804639 TCAGTGCCATAGTTGTATCAACTT 58.195 37.500 18.02 6.13 0.00 2.66
897 974 9.214957 CAACTTCCAGTGTACAATCTTGTAATA 57.785 33.333 0.00 0.00 44.46 0.98
948 1026 2.290464 CGAAGACTATCACCGGAGACT 58.710 52.381 9.46 0.00 0.00 3.24
1115 1200 3.719268 AACAGGAATGTATGTCTGCCA 57.281 42.857 0.00 0.00 0.00 4.92
1201 1291 2.362397 TCCAGCCTTCAGTCATACGATC 59.638 50.000 0.00 0.00 0.00 3.69
1299 1389 2.099141 TTCGCAGCAGCTCTATGTTT 57.901 45.000 0.00 0.00 39.10 2.83
1342 1432 2.430942 CGGCCGAACAACGACGTAG 61.431 63.158 24.07 0.00 45.77 3.51
1343 1433 2.723719 GGCCGAACAACGACGTAGC 61.724 63.158 0.00 0.00 45.77 3.58
1359 1449 2.682563 CGTAGCTCTCTGTCCTTCTCCT 60.683 54.545 0.00 0.00 0.00 3.69
1427 1521 3.190079 TGCTACATCGAATCTGTTGCTC 58.810 45.455 19.59 0.00 43.01 4.26
1466 1560 2.591429 CTGCAAGCACGTGTGGGA 60.591 61.111 18.38 7.31 0.00 4.37
1501 1595 2.423577 CCTTGACCTGAACCTTTACCG 58.576 52.381 0.00 0.00 0.00 4.02
1515 1609 0.738975 TTACCGGCAGTCTCTGATCG 59.261 55.000 0.00 4.01 32.44 3.69
1561 1655 0.762082 CTGAGCTCCAGGAGGCCATA 60.762 60.000 18.83 0.13 39.23 2.74
1576 1670 2.961062 GGCCATAATCCAAAGCTGTGAT 59.039 45.455 5.12 0.00 0.00 3.06
1591 1685 1.297664 GTGATCCAGCAGTCTCATGC 58.702 55.000 0.00 0.00 46.88 4.06
1657 1758 1.679944 CCCGTGATGATCCTGTGCTTT 60.680 52.381 0.00 0.00 0.00 3.51
1699 1800 5.579564 AGCCTGCAAAGTAGTACTAGTAC 57.420 43.478 23.03 23.03 36.35 2.73
1735 1836 2.103094 TCCTGAGCACAGATTATTCCCG 59.897 50.000 13.19 0.00 46.03 5.14
1743 1844 4.452455 GCACAGATTATTCCCGTATCCTTG 59.548 45.833 0.00 0.00 0.00 3.61
1747 1848 7.713507 CACAGATTATTCCCGTATCCTTGTTAA 59.286 37.037 0.00 0.00 0.00 2.01
1762 1864 6.166279 TCCTTGTTAAGCTATCACAACTCTG 58.834 40.000 0.00 0.00 0.00 3.35
1763 1865 5.934625 CCTTGTTAAGCTATCACAACTCTGT 59.065 40.000 0.00 0.00 35.63 3.41
1768 1870 4.808414 AGCTATCACAACTCTGTAAGCA 57.192 40.909 0.00 0.00 37.41 3.91
1778 1880 7.764443 TCACAACTCTGTAAGCACTTATTATCC 59.236 37.037 0.00 0.00 33.22 2.59
1803 1907 6.620877 AGGGTCTACATATCTGTTTCACAA 57.379 37.500 0.00 0.00 36.79 3.33
1823 1928 1.822615 GTTTTGTGGGCTGGCAAGT 59.177 52.632 2.88 0.00 0.00 3.16
1832 1937 1.980772 GCTGGCAAGTGCATTCCCT 60.981 57.895 5.52 0.00 44.36 4.20
1886 1992 4.324099 GCTGCAGGGTGATATCCTATCATT 60.324 45.833 17.12 0.00 32.49 2.57
1887 1993 5.426504 CTGCAGGGTGATATCCTATCATTC 58.573 45.833 5.57 0.00 32.49 2.67
1895 2004 7.389053 GGGTGATATCCTATCATTCTGAACAAC 59.611 40.741 0.00 0.00 0.00 3.32
1977 2086 5.540911 TCTGCAATTTGGTCCTGAATTTTC 58.459 37.500 0.00 0.00 0.00 2.29
2075 2186 5.128499 CACTGATGAGGAGAGGACTATTGTT 59.872 44.000 0.00 0.00 0.00 2.83
2076 2187 5.362430 ACTGATGAGGAGAGGACTATTGTTC 59.638 44.000 0.00 0.00 0.00 3.18
2077 2188 4.339530 TGATGAGGAGAGGACTATTGTTCG 59.660 45.833 0.00 0.00 0.00 3.95
2078 2189 3.024547 TGAGGAGAGGACTATTGTTCGG 58.975 50.000 0.00 0.00 0.00 4.30
2079 2190 2.362717 GAGGAGAGGACTATTGTTCGGG 59.637 54.545 0.00 0.00 0.00 5.14
2080 2191 1.413077 GGAGAGGACTATTGTTCGGGG 59.587 57.143 0.00 0.00 0.00 5.73
2081 2192 2.385803 GAGAGGACTATTGTTCGGGGA 58.614 52.381 0.00 0.00 0.00 4.81
2082 2193 2.764572 GAGAGGACTATTGTTCGGGGAA 59.235 50.000 0.00 0.00 0.00 3.97
2083 2194 2.500504 AGAGGACTATTGTTCGGGGAAC 59.499 50.000 1.65 1.65 42.26 3.62
2095 2242 4.062032 GGGAACAGGGGAAGGGGC 62.062 72.222 0.00 0.00 0.00 5.80
2105 2252 4.803908 GAAGGGGCAAGAGCGGGG 62.804 72.222 0.00 0.00 43.41 5.73
2210 2374 5.030295 CAGCCGATTGCAACTAGTTTTATG 58.970 41.667 5.07 0.00 44.83 1.90
2214 2378 6.183360 GCCGATTGCAACTAGTTTTATGTACT 60.183 38.462 5.07 0.00 40.77 2.73
2287 2453 8.729756 TGGAAAACATTACATATGAACAGTCTG 58.270 33.333 10.38 0.00 0.00 3.51
2345 2511 3.676049 CGAAGCAACCATACAGCTCAGTA 60.676 47.826 0.00 0.00 37.70 2.74
2394 2561 7.716123 CAGAGAAGGCAAGATAGAATCTGAATT 59.284 37.037 0.00 0.00 40.13 2.17
2421 2588 8.380099 TGGAGTTACATCTAACAAACCTTGTAT 58.620 33.333 0.00 0.00 44.59 2.29
2470 2637 0.886490 AGCTGCAGGTGAGGAAAACG 60.886 55.000 19.45 0.00 0.00 3.60
2478 2645 4.456566 GCAGGTGAGGAAAACGGTAAATAA 59.543 41.667 0.00 0.00 0.00 1.40
2491 2659 4.255301 CGGTAAATAAGGTGGCACAGTTA 58.745 43.478 20.82 15.96 41.80 2.24
2505 2673 7.870445 GGTGGCACAGTTAAAAATTCTGAATTA 59.130 33.333 20.82 0.00 41.80 1.40
2551 2719 5.774498 AGTTCAGGTCAGTTCAAAATTCC 57.226 39.130 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 89 5.551233 TCCCTTTGAACATCACTACTTGAG 58.449 41.667 0.00 0.00 37.77 3.02
125 129 3.142951 CCACCACGTTAGATTTTGGACA 58.857 45.455 0.00 0.00 33.02 4.02
216 225 5.464057 CGAAAACCCATATATGACGCTAACA 59.536 40.000 14.54 0.00 0.00 2.41
231 240 2.785562 CACTGGATAACCGAAAACCCA 58.214 47.619 0.00 0.00 39.42 4.51
234 243 2.156098 TGGCACTGGATAACCGAAAAC 58.844 47.619 0.00 0.00 39.42 2.43
244 253 1.362224 AACTGGTACTGGCACTGGAT 58.638 50.000 0.00 0.00 0.00 3.41
293 310 1.939769 GAGGAGACGAGGAGCACCAC 61.940 65.000 2.07 0.00 38.94 4.16
294 311 1.679305 GAGGAGACGAGGAGCACCA 60.679 63.158 2.07 0.00 38.94 4.17
363 380 4.777546 TGGGGGAGGATGGGTGGG 62.778 72.222 0.00 0.00 0.00 4.61
422 440 4.388499 GGAAACTGGCGAGCGGGA 62.388 66.667 0.00 0.00 0.00 5.14
426 444 2.436824 GGAGGGAAACTGGCGAGC 60.437 66.667 0.00 0.00 0.00 5.03
427 445 1.219393 GAGGAGGGAAACTGGCGAG 59.781 63.158 0.00 0.00 0.00 5.03
428 446 2.646175 CGAGGAGGGAAACTGGCGA 61.646 63.158 0.00 0.00 0.00 5.54
429 447 2.125512 CGAGGAGGGAAACTGGCG 60.126 66.667 0.00 0.00 0.00 5.69
430 448 1.376037 CACGAGGAGGGAAACTGGC 60.376 63.158 0.00 0.00 0.00 4.85
540 589 2.746142 CGGGCTGCCTGATGAAATCTAA 60.746 50.000 23.22 0.00 45.81 2.10
542 591 0.465097 CGGGCTGCCTGATGAAATCT 60.465 55.000 23.22 0.00 45.81 2.40
567 616 2.946564 ACCGCTAACAACGTACCTAAC 58.053 47.619 0.00 0.00 0.00 2.34
605 655 4.399618 TCTGAAACTTGACTCGATCCCTAG 59.600 45.833 0.00 0.00 0.00 3.02
608 658 3.594603 TCTGAAACTTGACTCGATCCC 57.405 47.619 0.00 0.00 0.00 3.85
645 696 4.371624 ACAGTCATTCCAACATTCTGGA 57.628 40.909 0.00 0.00 43.99 3.86
673 733 3.196039 CAGACATGCAATTCCAATCCCAA 59.804 43.478 0.00 0.00 0.00 4.12
715 777 1.153005 GGGAAGGAGGCATCAGCTG 60.153 63.158 7.63 7.63 41.70 4.24
809 886 1.214589 CCCTGCTGCTCAACATTGC 59.785 57.895 0.00 0.00 0.00 3.56
871 948 7.490962 TTACAAGATTGTACACTGGAAGTTG 57.509 36.000 4.94 0.00 43.98 3.16
876 953 9.952030 TTCAATATTACAAGATTGTACACTGGA 57.048 29.630 4.94 0.00 42.84 3.86
948 1026 4.532834 GCAAAATGAGGGGGTTATGTCTA 58.467 43.478 0.00 0.00 0.00 2.59
1115 1200 8.753497 AGTTTTGAGGAGAAATCAAAGTAACT 57.247 30.769 1.88 1.21 44.86 2.24
1201 1291 3.753434 AGCGACCGCAGAGTCCAG 61.753 66.667 16.97 0.00 44.88 3.86
1299 1389 1.139734 GAGCTCGCCGATGAACTGA 59.860 57.895 0.00 0.00 0.00 3.41
1342 1432 0.175531 GCAGGAGAAGGACAGAGAGC 59.824 60.000 0.00 0.00 0.00 4.09
1343 1433 1.851304 AGCAGGAGAAGGACAGAGAG 58.149 55.000 0.00 0.00 0.00 3.20
1400 1490 6.073602 GCAACAGATTCGATGTAGCATCATTA 60.074 38.462 9.40 0.00 0.00 1.90
1466 1560 1.202879 TCAAGGCCATCAACGTTCCTT 60.203 47.619 5.01 11.37 37.61 3.36
1501 1595 1.064946 CGGACGATCAGAGACTGCC 59.935 63.158 0.00 0.00 0.00 4.85
1515 1609 1.787847 CTTCATGTTGCCGTCGGAC 59.212 57.895 17.49 5.73 0.00 4.79
1576 1670 1.614525 AGGGCATGAGACTGCTGGA 60.615 57.895 0.00 0.00 41.95 3.86
1581 1675 2.943690 CTGAATTGAGGGCATGAGACTG 59.056 50.000 0.00 0.00 0.00 3.51
1582 1676 2.575279 ACTGAATTGAGGGCATGAGACT 59.425 45.455 0.00 0.00 0.00 3.24
1583 1677 2.996631 ACTGAATTGAGGGCATGAGAC 58.003 47.619 0.00 0.00 0.00 3.36
1612 1706 2.565841 GTGATTCTGCCCTCATGTACC 58.434 52.381 0.00 0.00 0.00 3.34
1657 1758 2.666272 TGCACCCATCTAACAAACCA 57.334 45.000 0.00 0.00 0.00 3.67
1699 1800 6.145535 GTGCTCAGGAATTTCAGTTAACAAG 58.854 40.000 8.61 0.00 0.00 3.16
1712 1813 4.723309 GGGAATAATCTGTGCTCAGGAAT 58.277 43.478 15.39 0.31 41.59 3.01
1735 1836 7.982354 AGAGTTGTGATAGCTTAACAAGGATAC 59.018 37.037 8.34 0.00 34.64 2.24
1743 1844 6.590292 TGCTTACAGAGTTGTGATAGCTTAAC 59.410 38.462 0.00 0.00 37.89 2.01
1747 1848 4.221703 AGTGCTTACAGAGTTGTGATAGCT 59.778 41.667 0.00 0.00 37.89 3.32
1762 1864 5.010820 AGACCCTCGGATAATAAGTGCTTAC 59.989 44.000 0.00 0.00 0.00 2.34
1763 1865 5.145564 AGACCCTCGGATAATAAGTGCTTA 58.854 41.667 0.00 0.00 0.00 3.09
1768 1870 8.337739 AGATATGTAGACCCTCGGATAATAAGT 58.662 37.037 0.00 0.00 0.00 2.24
1778 1880 5.163550 TGTGAAACAGATATGTAGACCCTCG 60.164 44.000 0.00 0.00 45.67 4.63
1803 1907 2.015227 CTTGCCAGCCCACAAAACGT 62.015 55.000 0.00 0.00 0.00 3.99
1832 1937 1.473258 AACAACACCTCTGCTGCAAA 58.527 45.000 3.02 0.00 0.00 3.68
1886 1992 4.442706 GAAGAACACTCCAGTTGTTCAGA 58.557 43.478 15.55 0.00 45.68 3.27
1887 1993 4.802876 GAAGAACACTCCAGTTGTTCAG 57.197 45.455 15.55 0.00 45.68 3.02
1895 2004 4.464244 TCTCATACAGGAAGAACACTCCAG 59.536 45.833 0.00 0.00 0.00 3.86
1977 2086 4.681942 GTGTAGTGTAGCTGTTCTGTTCAG 59.318 45.833 0.00 0.00 36.18 3.02
2026 2135 2.271800 GTTCCTGACTCGCCAATACAG 58.728 52.381 0.00 0.00 0.00 2.74
2029 2140 2.481276 CGATGTTCCTGACTCGCCAATA 60.481 50.000 0.00 0.00 0.00 1.90
2051 2162 4.648762 ACAATAGTCCTCTCCTCATCAGTG 59.351 45.833 0.00 0.00 0.00 3.66
2075 2186 2.609610 CCTTCCCCTGTTCCCCGA 60.610 66.667 0.00 0.00 0.00 5.14
2076 2187 3.728373 CCCTTCCCCTGTTCCCCG 61.728 72.222 0.00 0.00 0.00 5.73
2077 2188 3.347590 CCCCTTCCCCTGTTCCCC 61.348 72.222 0.00 0.00 0.00 4.81
2078 2189 4.062032 GCCCCTTCCCCTGTTCCC 62.062 72.222 0.00 0.00 0.00 3.97
2079 2190 2.788210 CTTGCCCCTTCCCCTGTTCC 62.788 65.000 0.00 0.00 0.00 3.62
2080 2191 1.304464 CTTGCCCCTTCCCCTGTTC 60.304 63.158 0.00 0.00 0.00 3.18
2081 2192 1.778383 TCTTGCCCCTTCCCCTGTT 60.778 57.895 0.00 0.00 0.00 3.16
2082 2193 2.121506 TCTTGCCCCTTCCCCTGT 60.122 61.111 0.00 0.00 0.00 4.00
2083 2194 2.679716 CTCTTGCCCCTTCCCCTG 59.320 66.667 0.00 0.00 0.00 4.45
2084 2195 3.342477 GCTCTTGCCCCTTCCCCT 61.342 66.667 0.00 0.00 0.00 4.79
2085 2196 4.803908 CGCTCTTGCCCCTTCCCC 62.804 72.222 0.00 0.00 35.36 4.81
2086 2197 4.803908 CCGCTCTTGCCCCTTCCC 62.804 72.222 0.00 0.00 35.36 3.97
2164 2311 2.106074 GTTGATGCATCCGCCGTCA 61.106 57.895 23.67 1.62 37.32 4.35
2210 2374 7.337436 ACAGACTAGAGTTACTGATTGGAGTAC 59.663 40.741 0.00 0.00 34.88 2.73
2214 2378 7.631007 TCTACAGACTAGAGTTACTGATTGGA 58.369 38.462 0.00 0.00 34.88 3.53
2345 2511 9.125026 TCTGAGAAGCTTAATTCAGAAACTTTT 57.875 29.630 24.40 0.00 42.08 2.27
2394 2561 7.057894 ACAAGGTTTGTTAGATGTAACTCCAA 58.942 34.615 13.36 2.36 42.22 3.53
2421 2588 6.712547 ACAAAACAAAACCAAATCAAAGACCA 59.287 30.769 0.00 0.00 0.00 4.02
2470 2637 6.578163 TTTAACTGTGCCACCTTATTTACC 57.422 37.500 0.00 0.00 0.00 2.85
2478 2645 4.892934 TCAGAATTTTTAACTGTGCCACCT 59.107 37.500 0.00 0.00 33.93 4.00
2524 2692 6.445357 TTTTGAACTGACCTGAACTTTACC 57.555 37.500 0.00 0.00 0.00 2.85
2525 2693 7.648112 GGAATTTTGAACTGACCTGAACTTTAC 59.352 37.037 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.