Multiple sequence alignment - TraesCS1A01G432500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G432500 chr1A 100.000 3500 0 0 1 3500 584341735 584338236 0.000000e+00 6464.0
1 TraesCS1A01G432500 chr1A 82.882 1589 218 22 43 1612 584083868 584085421 0.000000e+00 1378.0
2 TraesCS1A01G432500 chr1A 79.542 1266 179 46 1620 2842 584085382 584086610 0.000000e+00 830.0
3 TraesCS1A01G432500 chr1D 97.098 2171 41 3 1 2149 486744359 486742189 0.000000e+00 3640.0
4 TraesCS1A01G432500 chr1D 85.852 1350 159 11 88 1419 486729620 486728285 0.000000e+00 1406.0
5 TraesCS1A01G432500 chr1D 82.606 1581 206 32 49 1603 396187760 396189297 0.000000e+00 1332.0
6 TraesCS1A01G432500 chr1D 84.740 865 126 5 1663 2521 396189321 396190185 0.000000e+00 861.0
7 TraesCS1A01G432500 chr1D 94.004 467 17 3 2621 3076 486742193 486741727 0.000000e+00 697.0
8 TraesCS1A01G432500 chr1D 94.430 377 14 2 3077 3446 486741688 486741312 1.090000e-159 573.0
9 TraesCS1A01G432500 chr1D 87.209 344 41 3 2179 2521 486727446 486727105 4.240000e-104 388.0
10 TraesCS1A01G432500 chr1D 82.955 352 54 6 1663 2011 486728104 486727756 2.620000e-81 313.0
11 TraesCS1A01G432500 chr1D 78.169 142 16 7 3361 3496 396191243 396191375 3.750000e-10 76.8
12 TraesCS1A01G432500 chr1B 83.186 1362 203 10 77 1420 677620282 677618929 0.000000e+00 1223.0
13 TraesCS1A01G432500 chr1B 82.755 864 142 5 1663 2521 677618749 677617888 0.000000e+00 763.0
14 TraesCS1A01G432500 chr1B 90.566 106 10 0 2684 2789 677530322 677530427 1.310000e-29 141.0
15 TraesCS1A01G432500 chr2A 83.525 783 102 11 661 1423 750416472 750417247 0.000000e+00 706.0
16 TraesCS1A01G432500 chr2A 86.473 584 79 0 36 619 750415889 750416472 2.950000e-180 641.0
17 TraesCS1A01G432500 chr2A 85.920 348 49 0 2175 2522 750417858 750418205 4.270000e-99 372.0
18 TraesCS1A01G432500 chr2A 83.439 314 46 6 1663 1973 750417424 750417734 1.590000e-73 287.0
19 TraesCS1A01G432500 chr7D 73.184 358 88 4 986 1336 17252059 17251703 4.740000e-24 122.0
20 TraesCS1A01G432500 chr7A 87.179 78 8 2 847 923 16644435 16644359 1.730000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G432500 chr1A 584338236 584341735 3499 True 6464.000000 6464 100.000000 1 3500 1 chr1A.!!$R1 3499
1 TraesCS1A01G432500 chr1A 584083868 584086610 2742 False 1104.000000 1378 81.212000 43 2842 2 chr1A.!!$F1 2799
2 TraesCS1A01G432500 chr1D 486741312 486744359 3047 True 1636.666667 3640 95.177333 1 3446 3 chr1D.!!$R2 3445
3 TraesCS1A01G432500 chr1D 396187760 396191375 3615 False 756.600000 1332 81.838333 49 3496 3 chr1D.!!$F1 3447
4 TraesCS1A01G432500 chr1D 486727105 486729620 2515 True 702.333333 1406 85.338667 88 2521 3 chr1D.!!$R1 2433
5 TraesCS1A01G432500 chr1B 677617888 677620282 2394 True 993.000000 1223 82.970500 77 2521 2 chr1B.!!$R1 2444
6 TraesCS1A01G432500 chr2A 750415889 750418205 2316 False 501.500000 706 84.839250 36 2522 4 chr2A.!!$F1 2486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 1.202256 CGTCCGCAGACATAGCTGTAA 60.202 52.381 0.00 0.0 43.73 2.41 F
1629 1649 1.185315 CAAATGGGCCGGAGTCAAAT 58.815 50.000 5.05 0.0 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 1810 0.770499 TGGCCACACATCTTCTGGAA 59.230 50.0 0.00 0.0 0.0 3.53 R
3401 3954 0.390860 GATACACGGCAGCTGATCCT 59.609 55.0 20.43 0.0 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 1.202256 CGTCCGCAGACATAGCTGTAA 60.202 52.381 0.00 0.00 43.73 2.41
128 129 2.735151 AGATGGACGGTGTCACTCATA 58.265 47.619 2.35 0.00 33.68 2.15
513 514 4.467084 GGCCCTCAACGCGATCCA 62.467 66.667 15.93 0.00 0.00 3.41
529 530 3.366121 CGATCCACATCATCGCATACTTC 59.634 47.826 0.00 0.00 36.98 3.01
685 686 5.388944 CAGTCGTACAAGTACTTGGTCTAC 58.611 45.833 33.11 24.99 44.45 2.59
984 1004 6.815641 TGCAAGAGAAGAGAGACAATTATGAC 59.184 38.462 0.00 0.00 0.00 3.06
1323 1343 3.499737 CATCGGTGCTGGCGGAAC 61.500 66.667 0.00 0.00 0.00 3.62
1469 1489 2.103941 TCAAGTTGGCCAAATTTCCCAC 59.896 45.455 27.60 10.18 0.00 4.61
1507 1527 2.357009 TCAGAGGTAAAGACGGCGATAC 59.643 50.000 16.62 10.82 0.00 2.24
1629 1649 1.185315 CAAATGGGCCGGAGTCAAAT 58.815 50.000 5.05 0.00 0.00 2.32
1737 1757 5.122396 ACATACCTCTGATGAAGCGAAAAAC 59.878 40.000 0.00 0.00 0.00 2.43
1787 1810 4.562143 GCTCTTGGCCAAGAAATCAACAAT 60.562 41.667 40.02 0.00 45.75 2.71
1978 2007 5.401972 TCGATGCAAAATGTTTACAGCAAAG 59.598 36.000 0.00 0.00 35.45 2.77
2172 2362 6.460781 CACTAACAGTTCCATACCAACTACA 58.539 40.000 0.00 0.00 32.61 2.74
2173 2372 6.590292 CACTAACAGTTCCATACCAACTACAG 59.410 42.308 0.00 0.00 32.61 2.74
2181 2380 5.145564 TCCATACCAACTACAGATAGGGAC 58.854 45.833 0.00 0.00 32.08 4.46
2192 2391 7.460071 ACTACAGATAGGGACGATACTATTGT 58.540 38.462 0.00 4.35 32.08 2.71
2193 2392 8.600668 ACTACAGATAGGGACGATACTATTGTA 58.399 37.037 0.00 5.14 32.08 2.41
2194 2393 7.684937 ACAGATAGGGACGATACTATTGTAC 57.315 40.000 0.00 0.00 30.43 2.90
2197 2396 7.547019 CAGATAGGGACGATACTATTGTACGTA 59.453 40.741 12.09 4.25 36.93 3.57
2205 2404 9.770503 GACGATACTATTGTACGTAATGATGAT 57.229 33.333 0.00 0.00 36.93 2.45
2286 2485 7.256154 GCTTATGAAGAAGATAGAGTAGGCCTT 60.256 40.741 12.58 0.00 0.00 4.35
2307 2506 2.551270 TGGAGGGATCTAGCAGTGTTT 58.449 47.619 0.00 0.00 0.00 2.83
2325 2524 3.460340 TGTTTTGGACAGGTTTCCTCCTA 59.540 43.478 0.00 0.00 36.51 2.94
2379 2578 2.550830 AGACACGACTTGCTGGAAAT 57.449 45.000 0.00 0.00 0.00 2.17
2380 2579 3.678056 AGACACGACTTGCTGGAAATA 57.322 42.857 0.00 0.00 0.00 1.40
2455 2654 2.124109 TCAGGCACGGGCAAACAA 60.124 55.556 13.89 0.00 43.71 2.83
2481 2680 2.569404 AGACCCAGAAGACCTTGATGAC 59.431 50.000 0.00 0.00 0.00 3.06
2485 2684 2.029020 CCAGAAGACCTTGATGACGTCA 60.029 50.000 22.48 22.48 34.25 4.35
2501 2700 0.321653 GTCAACCCGCTCAGGTGATT 60.322 55.000 0.00 0.00 40.05 2.57
2512 2711 5.066375 CCGCTCAGGTGATTAATTTGATGAA 59.934 40.000 0.00 0.00 34.51 2.57
2532 2735 3.357079 CAGTCCTTGCACGGTGGC 61.357 66.667 9.36 3.04 0.00 5.01
2557 2762 0.672401 GGCTGTTCGGTCGATTTGGA 60.672 55.000 0.00 0.00 0.00 3.53
2560 2765 2.346803 CTGTTCGGTCGATTTGGATGT 58.653 47.619 0.00 0.00 0.00 3.06
2561 2766 2.742053 CTGTTCGGTCGATTTGGATGTT 59.258 45.455 0.00 0.00 0.00 2.71
2562 2767 2.482336 TGTTCGGTCGATTTGGATGTTG 59.518 45.455 0.00 0.00 0.00 3.33
2563 2768 2.465860 TCGGTCGATTTGGATGTTGT 57.534 45.000 0.00 0.00 0.00 3.32
2564 2769 2.773487 TCGGTCGATTTGGATGTTGTT 58.227 42.857 0.00 0.00 0.00 2.83
2565 2770 2.482336 TCGGTCGATTTGGATGTTGTTG 59.518 45.455 0.00 0.00 0.00 3.33
2566 2771 2.225491 CGGTCGATTTGGATGTTGTTGT 59.775 45.455 0.00 0.00 0.00 3.32
2569 2774 5.047188 GGTCGATTTGGATGTTGTTGTTTT 58.953 37.500 0.00 0.00 0.00 2.43
2571 2776 6.697892 GGTCGATTTGGATGTTGTTGTTTTTA 59.302 34.615 0.00 0.00 0.00 1.52
2578 2783 9.658799 TTTGGATGTTGTTGTTTTTATTTCTGA 57.341 25.926 0.00 0.00 0.00 3.27
2591 2796 5.543507 TTATTTCTGAAAAAGGGCAGCAA 57.456 34.783 6.95 0.00 32.27 3.91
2598 2803 3.876320 TGAAAAAGGGCAGCAATGTTTTC 59.124 39.130 12.48 12.48 36.16 2.29
2604 2911 3.056322 AGGGCAGCAATGTTTTCAGATTC 60.056 43.478 0.00 0.00 0.00 2.52
2606 2913 4.171754 GGCAGCAATGTTTTCAGATTCTC 58.828 43.478 0.00 0.00 0.00 2.87
2607 2914 4.321452 GGCAGCAATGTTTTCAGATTCTCA 60.321 41.667 0.00 0.00 0.00 3.27
2633 2940 2.747446 ACTGTAACATGCCCGACAATTC 59.253 45.455 0.00 0.00 0.00 2.17
2798 3140 9.237187 TGGCTATATTGTGTTAAATCTCAAACA 57.763 29.630 0.00 0.00 33.35 2.83
2816 3158 6.426327 TCAAACACGACAAATCTATTGTGTG 58.574 36.000 15.62 15.62 40.16 3.82
2847 3189 5.068460 CAGGTGAGGACAGAAACTAGGATAG 59.932 48.000 0.00 0.00 46.50 2.08
2854 3196 7.186268 AGGACAGAAACTAGGATAGAGAAAGT 58.814 38.462 0.00 0.00 42.77 2.66
2891 3271 4.124851 TCAGGTTCCTAAGCGATTCTTC 57.875 45.455 0.00 0.00 36.25 2.87
2936 3316 4.517285 GGCTCATAAGTTTCAGACATGGA 58.483 43.478 0.00 0.00 0.00 3.41
2942 3322 7.685481 TCATAAGTTTCAGACATGGAACCTAA 58.315 34.615 0.00 0.00 44.88 2.69
2960 3340 4.475016 ACCTAAGCATTCTGTGGTAGGATT 59.525 41.667 1.66 0.00 37.63 3.01
2995 3375 0.394216 TATGGACATGGGCACACTGC 60.394 55.000 0.00 0.00 44.08 4.40
3076 3474 4.081420 TGAGGATTCTGCTGAGTAAACCTC 60.081 45.833 12.38 12.38 40.89 3.85
3077 3475 4.100373 AGGATTCTGCTGAGTAAACCTCT 58.900 43.478 0.00 0.00 41.11 3.69
3078 3476 4.161377 AGGATTCTGCTGAGTAAACCTCTC 59.839 45.833 0.00 0.00 41.11 3.20
3079 3477 3.963428 TTCTGCTGAGTAAACCTCTCC 57.037 47.619 0.00 0.00 41.11 3.71
3190 3656 2.341101 TGACCCGCTCCTCGACTTC 61.341 63.158 0.00 0.00 41.67 3.01
3196 3662 1.430228 GCTCCTCGACTTCTCCGAC 59.570 63.158 0.00 0.00 32.18 4.79
3401 3954 1.450669 GCAAGACGGCGGGGAATTA 60.451 57.895 13.24 0.00 0.00 1.40
3449 4006 0.106669 GCCCAAGGGATGTTAGGTCC 60.107 60.000 9.92 0.00 37.50 4.46
3453 4010 1.280998 CAAGGGATGTTAGGTCCGGTT 59.719 52.381 0.00 0.00 36.58 4.44
3470 4027 3.492829 CCGGTTAGGAAATAGCAGAGTCC 60.493 52.174 0.00 0.00 45.00 3.85
3471 4028 3.385111 CGGTTAGGAAATAGCAGAGTCCT 59.615 47.826 4.67 4.67 43.09 3.85
3472 4029 4.141914 CGGTTAGGAAATAGCAGAGTCCTT 60.142 45.833 4.59 0.00 40.93 3.36
3474 4031 6.406624 CGGTTAGGAAATAGCAGAGTCCTTTA 60.407 42.308 4.59 0.00 40.93 1.85
3475 4032 6.987404 GGTTAGGAAATAGCAGAGTCCTTTAG 59.013 42.308 4.59 0.00 40.93 1.85
3478 4035 7.444703 AGGAAATAGCAGAGTCCTTTAGAAT 57.555 36.000 0.00 0.00 37.17 2.40
3479 4036 7.505258 AGGAAATAGCAGAGTCCTTTAGAATC 58.495 38.462 0.00 0.00 37.17 2.52
3480 4037 7.126421 AGGAAATAGCAGAGTCCTTTAGAATCA 59.874 37.037 0.00 0.00 42.15 2.57
3481 4038 7.770897 GGAAATAGCAGAGTCCTTTAGAATCAA 59.229 37.037 0.00 0.00 42.15 2.57
3482 4039 9.167311 GAAATAGCAGAGTCCTTTAGAATCAAA 57.833 33.333 0.00 0.00 42.15 2.69
3484 4041 9.692325 AATAGCAGAGTCCTTTAGAATCAAAAT 57.308 29.630 0.00 0.00 42.15 1.82
3486 4043 7.824672 AGCAGAGTCCTTTAGAATCAAAATTG 58.175 34.615 0.00 0.00 42.15 2.32
3487 4044 7.667219 AGCAGAGTCCTTTAGAATCAAAATTGA 59.333 33.333 0.00 0.00 42.15 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 7.121759 CAGTTTCATGGTAGACAGGATTGAAAT 59.878 37.037 0.00 0.00 39.96 2.17
513 514 1.069204 AGGCGAAGTATGCGATGATGT 59.931 47.619 0.00 0.00 42.52 3.06
685 686 1.672356 CAGCACCTTGTCTTCCCCG 60.672 63.158 0.00 0.00 0.00 5.73
844 848 1.626321 TCCTTCAATCGGTTGCCAGTA 59.374 47.619 2.72 0.00 35.26 2.74
1197 1217 2.205074 CCAACTATGATGCGAGTGACC 58.795 52.381 0.00 0.00 0.00 4.02
1323 1343 3.805108 GCATTACTGCCTCCACTATCAGG 60.805 52.174 0.00 0.00 42.88 3.86
1451 1471 1.799933 TGTGGGAAATTTGGCCAACT 58.200 45.000 20.35 10.83 0.00 3.16
1469 1489 3.933955 CTCTGACTCCAGCTTCATTCTTG 59.066 47.826 0.00 0.00 40.20 3.02
1629 1649 1.213678 AGCTGCTGCATAAGGGATTCA 59.786 47.619 18.42 0.00 42.74 2.57
1737 1757 1.954927 GAAGCCATCTAACCTTCGGG 58.045 55.000 0.00 0.00 41.87 5.14
1787 1810 0.770499 TGGCCACACATCTTCTGGAA 59.230 50.000 0.00 0.00 0.00 3.53
1978 2007 3.487544 GGCTTCGTGGCAATCTTGATAAC 60.488 47.826 0.00 0.00 41.37 1.89
2172 2362 6.471146 ACGTACAATAGTATCGTCCCTATCT 58.529 40.000 0.00 0.00 34.95 1.98
2173 2372 6.734104 ACGTACAATAGTATCGTCCCTATC 57.266 41.667 0.00 0.00 34.95 2.08
2205 2404 7.564793 CCATCTGGGTTATCGAATTATGGATA 58.435 38.462 0.00 0.00 34.57 2.59
2259 2458 6.015010 GGCCTACTCTATCTTCTTCATAAGCA 60.015 42.308 0.00 0.00 0.00 3.91
2286 2485 2.254152 ACACTGCTAGATCCCTCCAA 57.746 50.000 0.00 0.00 0.00 3.53
2307 2506 2.370849 GTGTAGGAGGAAACCTGTCCAA 59.629 50.000 0.00 0.00 40.48 3.53
2325 2524 0.467844 TGGTTGATGCTGCCAAGTGT 60.468 50.000 0.00 0.00 0.00 3.55
2379 2578 2.766263 CAGGTGTGTTATGAGCTCCCTA 59.234 50.000 12.15 0.00 0.00 3.53
2380 2579 1.556911 CAGGTGTGTTATGAGCTCCCT 59.443 52.381 12.15 4.58 0.00 4.20
2404 2603 0.813184 CCGGCATGAGACAGCAAAAT 59.187 50.000 0.00 0.00 0.00 1.82
2438 2637 1.523154 GATTGTTTGCCCGTGCCTGA 61.523 55.000 0.00 0.00 36.33 3.86
2455 2654 4.689062 TCAAGGTCTTCTGGGTCTAAGAT 58.311 43.478 0.00 0.00 34.43 2.40
2481 2680 2.507110 ATCACCTGAGCGGGTTGACG 62.507 60.000 0.00 0.00 37.52 4.35
2485 2684 3.366052 AATTAATCACCTGAGCGGGTT 57.634 42.857 0.00 0.00 37.52 4.11
2501 2700 6.003326 TGCAAGGACTGAGTTCATCAAATTA 58.997 36.000 0.00 0.00 37.52 1.40
2512 2711 1.069765 CACCGTGCAAGGACTGAGT 59.930 57.895 26.25 0.00 34.73 3.41
2532 2735 2.743928 GACCGAACAGCCTGCAGG 60.744 66.667 29.34 29.34 38.53 4.85
2560 2765 8.454894 GCCCTTTTTCAGAAATAAAAACAACAA 58.545 29.630 0.00 0.00 33.49 2.83
2561 2766 7.607991 TGCCCTTTTTCAGAAATAAAAACAACA 59.392 29.630 0.00 0.00 33.49 3.33
2562 2767 7.980062 TGCCCTTTTTCAGAAATAAAAACAAC 58.020 30.769 0.00 0.00 33.49 3.32
2563 2768 7.201688 GCTGCCCTTTTTCAGAAATAAAAACAA 60.202 33.333 0.00 0.00 33.49 2.83
2564 2769 6.259829 GCTGCCCTTTTTCAGAAATAAAAACA 59.740 34.615 0.00 0.00 33.49 2.83
2565 2770 6.259829 TGCTGCCCTTTTTCAGAAATAAAAAC 59.740 34.615 0.00 0.00 33.49 2.43
2566 2771 6.352516 TGCTGCCCTTTTTCAGAAATAAAAA 58.647 32.000 0.00 0.00 35.24 1.94
2569 2774 5.543507 TTGCTGCCCTTTTTCAGAAATAA 57.456 34.783 0.00 0.00 32.26 1.40
2571 2776 4.202388 ACATTGCTGCCCTTTTTCAGAAAT 60.202 37.500 0.00 0.00 38.72 2.17
2578 2783 3.878699 CTGAAAACATTGCTGCCCTTTTT 59.121 39.130 0.00 0.00 0.00 1.94
2583 2788 3.056322 AGAATCTGAAAACATTGCTGCCC 60.056 43.478 0.00 0.00 0.00 5.36
2598 2803 7.912250 GGCATGTTACAGTAAAATGAGAATCTG 59.088 37.037 23.03 0.87 35.79 2.90
2604 2911 4.634004 TCGGGCATGTTACAGTAAAATGAG 59.366 41.667 23.03 14.38 35.79 2.90
2606 2913 4.155099 TGTCGGGCATGTTACAGTAAAATG 59.845 41.667 16.62 16.62 36.64 2.32
2607 2914 4.328536 TGTCGGGCATGTTACAGTAAAAT 58.671 39.130 0.00 0.00 0.00 1.82
2633 2940 8.810427 CAGCTTTGCCAAACTATAATACAATTG 58.190 33.333 3.24 3.24 0.00 2.32
2642 2949 4.394920 GCACTACAGCTTTGCCAAACTATA 59.605 41.667 0.00 0.00 0.00 1.31
2645 2952 1.338020 GCACTACAGCTTTGCCAAACT 59.662 47.619 0.00 0.00 0.00 2.66
2680 3021 3.102052 ACACAGCAGCCAAATTGAAAG 57.898 42.857 0.00 0.00 0.00 2.62
2798 3140 4.894784 AGACCACACAATAGATTTGTCGT 58.105 39.130 0.00 0.00 0.00 4.34
2800 3142 7.225538 CCTGATAGACCACACAATAGATTTGTC 59.774 40.741 0.00 0.00 0.00 3.18
2816 3158 3.019799 TCTGTCCTCACCTGATAGACC 57.980 52.381 4.14 0.00 0.00 3.85
2854 3196 7.518188 AGGAACCTGAAGAATCTCTTAAACAA 58.482 34.615 0.00 0.00 36.73 2.83
2891 3271 3.529533 CTGCAGATTAGACTGAACCCTG 58.470 50.000 8.42 0.00 39.94 4.45
2936 3316 3.844211 TCCTACCACAGAATGCTTAGGTT 59.156 43.478 0.00 0.00 42.53 3.50
2942 3322 4.018960 ACTGAAATCCTACCACAGAATGCT 60.019 41.667 0.00 0.00 42.53 3.79
3026 3406 5.984725 TCTCCTTTGATAGTGCCGAATTAA 58.015 37.500 0.00 0.00 0.00 1.40
3076 3474 3.953775 AGTTGGCCACCACCGGAG 61.954 66.667 9.46 0.00 30.78 4.63
3077 3475 4.263572 CAGTTGGCCACCACCGGA 62.264 66.667 9.46 0.00 30.78 5.14
3170 3636 4.131088 GTCGAGGAGCGGGTCACC 62.131 72.222 9.66 0.00 41.33 4.02
3180 3646 2.396955 GCGTCGGAGAAGTCGAGGA 61.397 63.158 9.78 0.00 42.73 3.71
3190 3656 4.821589 GGGAGGCTTGCGTCGGAG 62.822 72.222 8.83 0.00 0.00 4.63
3243 3796 2.272146 GTGTCCATGCCCATCCGT 59.728 61.111 0.00 0.00 0.00 4.69
3312 3865 5.344743 TCTGTTCTGACATAGTGATTCCC 57.655 43.478 0.00 0.00 34.72 3.97
3401 3954 0.390860 GATACACGGCAGCTGATCCT 59.609 55.000 20.43 0.00 0.00 3.24
3449 4006 3.385111 AGGACTCTGCTATTTCCTAACCG 59.615 47.826 0.00 0.00 36.67 4.44
3453 4010 7.973048 TTCTAAAGGACTCTGCTATTTCCTA 57.027 36.000 0.00 0.00 37.51 2.94
3458 4015 9.692325 ATTTTGATTCTAAAGGACTCTGCTATT 57.308 29.630 0.21 0.00 0.00 1.73
3460 4017 8.950210 CAATTTTGATTCTAAAGGACTCTGCTA 58.050 33.333 0.21 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.