Multiple sequence alignment - TraesCS1A01G431400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G431400 chr1A 100.000 3029 0 0 1 3029 583603369 583606397 0.000000e+00 5594.0
1 TraesCS1A01G431400 chr1A 86.643 569 72 4 2429 2994 543385321 543384754 7.130000e-176 627.0
2 TraesCS1A01G431400 chr1A 92.754 138 9 1 2291 2427 543385412 543385275 6.620000e-47 198.0
3 TraesCS1A01G431400 chr1A 100.000 47 0 0 2429 2475 583605749 583605795 1.500000e-13 87.9
4 TraesCS1A01G431400 chr1A 100.000 47 0 0 2381 2427 583605797 583605843 1.500000e-13 87.9
5 TraesCS1A01G431400 chr1D 89.259 1471 77 32 798 2224 486013889 486015322 0.000000e+00 1766.0
6 TraesCS1A01G431400 chr1D 93.720 414 23 3 386 797 213551278 213550866 4.290000e-173 617.0
7 TraesCS1A01G431400 chr1D 95.686 255 4 3 1 251 486013557 486013808 1.310000e-108 403.0
8 TraesCS1A01G431400 chr1D 87.500 64 4 3 333 396 486013847 486013906 1.510000e-08 71.3
9 TraesCS1A01G431400 chr1B 88.731 1198 83 27 1131 2291 676746300 676747482 0.000000e+00 1417.0
10 TraesCS1A01G431400 chr1B 93.462 413 23 4 387 797 447075956 447075546 7.180000e-171 610.0
11 TraesCS1A01G431400 chr1B 94.828 348 12 2 798 1139 676745674 676746021 3.440000e-149 538.0
12 TraesCS1A01G431400 chr1B 94.172 326 8 4 3 324 676745332 676745650 1.260000e-133 486.0
13 TraesCS1A01G431400 chr1B 88.235 119 13 1 2290 2407 484292329 484292211 1.130000e-29 141.0
14 TraesCS1A01G431400 chr6B 89.785 558 44 10 1522 2076 527622595 527622048 0.000000e+00 702.0
15 TraesCS1A01G431400 chr6B 88.448 554 52 9 1522 2073 564720285 564720828 0.000000e+00 658.0
16 TraesCS1A01G431400 chr6B 92.067 416 27 6 386 798 53445837 53446249 5.630000e-162 580.0
17 TraesCS1A01G431400 chr3B 89.892 554 44 9 1522 2073 18542348 18542891 0.000000e+00 702.0
18 TraesCS1A01G431400 chr3B 89.587 557 45 10 1522 2076 644434293 644433748 0.000000e+00 695.0
19 TraesCS1A01G431400 chr3B 88.199 322 28 5 1496 1815 228209344 228209031 2.850000e-100 375.0
20 TraesCS1A01G431400 chr3B 75.676 518 95 20 2493 2998 816094233 816093735 2.350000e-56 230.0
21 TraesCS1A01G431400 chr3B 88.889 144 16 0 1274 1417 228318464 228318321 8.630000e-41 178.0
22 TraesCS1A01G431400 chr3B 87.586 145 15 3 1275 1417 228209578 228209435 6.720000e-37 165.0
23 TraesCS1A01G431400 chr3B 80.000 155 22 5 801 949 228386408 228386257 4.130000e-19 106.0
24 TraesCS1A01G431400 chr2A 89.531 554 44 10 1522 2073 617004447 617004988 0.000000e+00 689.0
25 TraesCS1A01G431400 chr2A 92.010 413 31 2 386 797 756822111 756821700 2.020000e-161 579.0
26 TraesCS1A01G431400 chr2A 76.996 526 104 14 2499 3014 698292085 698291567 4.940000e-73 285.0
27 TraesCS1A01G431400 chr3A 89.312 552 45 10 1527 2076 714029003 714028464 0.000000e+00 680.0
28 TraesCS1A01G431400 chr3A 84.843 541 61 14 1274 1813 171137730 171138250 2.680000e-145 525.0
29 TraesCS1A01G431400 chr3A 88.125 320 32 2 1496 1815 171173804 171174117 2.850000e-100 375.0
30 TraesCS1A01G431400 chr3A 94.483 145 8 0 995 1139 171137512 171137656 1.090000e-54 224.0
31 TraesCS1A01G431400 chr3A 91.275 149 10 1 995 1140 171173301 171173449 1.840000e-47 200.0
32 TraesCS1A01G431400 chr7A 88.849 556 44 12 1522 2073 71731867 71732408 0.000000e+00 667.0
33 TraesCS1A01G431400 chr4B 86.723 595 76 3 2437 3029 670915922 670916515 0.000000e+00 658.0
34 TraesCS1A01G431400 chr4B 82.852 519 77 9 2429 2938 10383748 10384263 3.560000e-124 455.0
35 TraesCS1A01G431400 chr2B 86.424 604 65 9 2429 3029 788990708 788991297 0.000000e+00 645.0
36 TraesCS1A01G431400 chr2B 94.189 413 22 2 386 797 597538482 597538071 1.980000e-176 628.0
37 TraesCS1A01G431400 chr2B 94.030 134 8 0 2294 2427 788990621 788990754 1.420000e-48 204.0
38 TraesCS1A01G431400 chr7D 93.795 419 23 3 386 802 117216809 117216392 7.130000e-176 627.0
39 TraesCS1A01G431400 chr4A 85.762 604 68 9 2429 3028 626394811 626395400 9.220000e-175 623.0
40 TraesCS1A01G431400 chr4A 92.086 139 10 1 2290 2427 626394719 626394857 8.570000e-46 195.0
41 TraesCS1A01G431400 chrUn 92.124 419 27 5 386 799 362343866 362344283 1.210000e-163 586.0
42 TraesCS1A01G431400 chrUn 91.866 418 32 2 382 797 8116421 8116004 1.570000e-162 582.0
43 TraesCS1A01G431400 chr5A 92.048 415 30 3 386 798 83549826 83550239 5.630000e-162 580.0
44 TraesCS1A01G431400 chr5D 83.547 547 62 15 1274 1812 62527957 62528483 1.260000e-133 486.0
45 TraesCS1A01G431400 chr6A 78.655 773 120 35 1276 2027 1960928 1961676 3.530000e-129 472.0
46 TraesCS1A01G431400 chr6D 83.205 518 76 7 2520 3029 472276180 472275666 5.910000e-127 464.0
47 TraesCS1A01G431400 chr6D 80.222 541 80 18 1279 1815 3025824 3025307 6.130000e-102 381.0
48 TraesCS1A01G431400 chr3D 83.333 540 48 22 1275 1813 157180182 157179684 7.650000e-126 460.0
49 TraesCS1A01G431400 chr3D 87.500 320 34 3 1496 1815 157102663 157102350 6.170000e-97 364.0
50 TraesCS1A01G431400 chr3D 93.289 149 10 0 995 1143 157180433 157180285 1.410000e-53 220.0
51 TraesCS1A01G431400 chr7B 78.603 458 83 9 2578 3029 745100250 745099802 3.820000e-74 289.0
52 TraesCS1A01G431400 chr2D 76.117 515 103 18 2503 3010 27620016 27620517 5.010000e-63 252.0
53 TraesCS1A01G431400 chr4D 94.118 136 6 1 2294 2427 15534785 15534920 3.960000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G431400 chr1A 583603369 583606397 3028 False 1923.266667 5594 100.0000 1 3029 3 chr1A.!!$F1 3028
1 TraesCS1A01G431400 chr1A 543384754 543385412 658 True 412.500000 627 89.6985 2291 2994 2 chr1A.!!$R1 703
2 TraesCS1A01G431400 chr1D 486013557 486015322 1765 False 746.766667 1766 90.8150 1 2224 3 chr1D.!!$F1 2223
3 TraesCS1A01G431400 chr1B 676745332 676747482 2150 False 813.666667 1417 92.5770 3 2291 3 chr1B.!!$F1 2288
4 TraesCS1A01G431400 chr6B 527622048 527622595 547 True 702.000000 702 89.7850 1522 2076 1 chr6B.!!$R1 554
5 TraesCS1A01G431400 chr6B 564720285 564720828 543 False 658.000000 658 88.4480 1522 2073 1 chr6B.!!$F2 551
6 TraesCS1A01G431400 chr3B 18542348 18542891 543 False 702.000000 702 89.8920 1522 2073 1 chr3B.!!$F1 551
7 TraesCS1A01G431400 chr3B 644433748 644434293 545 True 695.000000 695 89.5870 1522 2076 1 chr3B.!!$R3 554
8 TraesCS1A01G431400 chr3B 228209031 228209578 547 True 270.000000 375 87.8925 1275 1815 2 chr3B.!!$R5 540
9 TraesCS1A01G431400 chr2A 617004447 617004988 541 False 689.000000 689 89.5310 1522 2073 1 chr2A.!!$F1 551
10 TraesCS1A01G431400 chr2A 698291567 698292085 518 True 285.000000 285 76.9960 2499 3014 1 chr2A.!!$R1 515
11 TraesCS1A01G431400 chr3A 714028464 714029003 539 True 680.000000 680 89.3120 1527 2076 1 chr3A.!!$R1 549
12 TraesCS1A01G431400 chr3A 171137512 171138250 738 False 374.500000 525 89.6630 995 1813 2 chr3A.!!$F1 818
13 TraesCS1A01G431400 chr3A 171173301 171174117 816 False 287.500000 375 89.7000 995 1815 2 chr3A.!!$F2 820
14 TraesCS1A01G431400 chr7A 71731867 71732408 541 False 667.000000 667 88.8490 1522 2073 1 chr7A.!!$F1 551
15 TraesCS1A01G431400 chr4B 670915922 670916515 593 False 658.000000 658 86.7230 2437 3029 1 chr4B.!!$F2 592
16 TraesCS1A01G431400 chr4B 10383748 10384263 515 False 455.000000 455 82.8520 2429 2938 1 chr4B.!!$F1 509
17 TraesCS1A01G431400 chr2B 788990621 788991297 676 False 424.500000 645 90.2270 2294 3029 2 chr2B.!!$F1 735
18 TraesCS1A01G431400 chr4A 626394719 626395400 681 False 409.000000 623 88.9240 2290 3028 2 chr4A.!!$F1 738
19 TraesCS1A01G431400 chr5D 62527957 62528483 526 False 486.000000 486 83.5470 1274 1812 1 chr5D.!!$F1 538
20 TraesCS1A01G431400 chr6A 1960928 1961676 748 False 472.000000 472 78.6550 1276 2027 1 chr6A.!!$F1 751
21 TraesCS1A01G431400 chr6D 472275666 472276180 514 True 464.000000 464 83.2050 2520 3029 1 chr6D.!!$R2 509
22 TraesCS1A01G431400 chr6D 3025307 3025824 517 True 381.000000 381 80.2220 1279 1815 1 chr6D.!!$R1 536
23 TraesCS1A01G431400 chr3D 157179684 157180433 749 True 340.000000 460 88.3110 995 1813 2 chr3D.!!$R2 818
24 TraesCS1A01G431400 chr2D 27620016 27620517 501 False 252.000000 252 76.1170 2503 3010 1 chr2D.!!$F1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
755 759 0.598562 TAAATTTCGGCCGCAAAGCA 59.401 45.0 23.51 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2242 2694 0.320421 ACAGTTGGACCAATCGGACG 60.32 55.0 10.83 0.0 35.59 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 0.675837 CTCTGGCAGTGACCACATGG 60.676 60.000 15.27 0.00 42.17 3.66
191 195 1.179152 TCCGAACAAGCCATAGTCGA 58.821 50.000 0.00 0.00 0.00 4.20
336 340 8.840833 AAAGCAAAACTTTCTTAGTCCAAAAA 57.159 26.923 0.00 0.00 45.78 1.94
389 393 0.911053 TGGCATAGCATGAGTGGACA 59.089 50.000 0.00 0.00 0.00 4.02
390 394 1.134310 TGGCATAGCATGAGTGGACAG 60.134 52.381 0.00 0.00 0.00 3.51
391 395 1.139654 GGCATAGCATGAGTGGACAGA 59.860 52.381 0.00 0.00 0.00 3.41
392 396 2.481854 GCATAGCATGAGTGGACAGAG 58.518 52.381 0.00 0.00 0.00 3.35
393 397 2.102084 GCATAGCATGAGTGGACAGAGA 59.898 50.000 0.00 0.00 0.00 3.10
394 398 3.244146 GCATAGCATGAGTGGACAGAGAT 60.244 47.826 0.00 0.00 0.00 2.75
395 399 4.558178 CATAGCATGAGTGGACAGAGATC 58.442 47.826 0.00 0.00 0.00 2.75
396 400 2.464782 AGCATGAGTGGACAGAGATCA 58.535 47.619 0.00 0.00 0.00 2.92
397 401 2.431419 AGCATGAGTGGACAGAGATCAG 59.569 50.000 0.00 0.00 0.00 2.90
398 402 2.483363 GCATGAGTGGACAGAGATCAGG 60.483 54.545 0.00 0.00 0.00 3.86
399 403 2.612285 TGAGTGGACAGAGATCAGGT 57.388 50.000 0.00 0.00 0.00 4.00
400 404 2.174360 TGAGTGGACAGAGATCAGGTG 58.826 52.381 0.00 0.00 0.00 4.00
401 405 2.225117 TGAGTGGACAGAGATCAGGTGA 60.225 50.000 0.00 0.00 0.00 4.02
402 406 2.165437 GAGTGGACAGAGATCAGGTGAC 59.835 54.545 0.00 0.00 0.00 3.67
403 407 1.895798 GTGGACAGAGATCAGGTGACA 59.104 52.381 0.00 0.00 0.00 3.58
404 408 2.499289 GTGGACAGAGATCAGGTGACAT 59.501 50.000 0.00 0.00 0.00 3.06
405 409 2.498885 TGGACAGAGATCAGGTGACATG 59.501 50.000 0.00 0.00 0.00 3.21
406 410 2.548875 GACAGAGATCAGGTGACATGC 58.451 52.381 0.00 0.00 0.00 4.06
407 411 1.904537 ACAGAGATCAGGTGACATGCA 59.095 47.619 0.00 0.00 0.00 3.96
408 412 2.277969 CAGAGATCAGGTGACATGCAC 58.722 52.381 10.63 10.63 46.98 4.57
423 427 4.513275 CACGTTTGCATGTCACCG 57.487 55.556 0.00 1.34 0.00 4.94
424 428 1.646540 CACGTTTGCATGTCACCGT 59.353 52.632 0.00 1.94 34.15 4.83
425 429 0.657077 CACGTTTGCATGTCACCGTG 60.657 55.000 18.04 18.04 41.06 4.94
426 430 1.092921 ACGTTTGCATGTCACCGTGT 61.093 50.000 0.00 0.00 33.08 4.49
427 431 0.657077 CGTTTGCATGTCACCGTGTG 60.657 55.000 0.00 0.00 34.45 3.82
428 432 0.934436 GTTTGCATGTCACCGTGTGC 60.934 55.000 5.81 5.81 38.05 4.57
429 433 2.069465 TTTGCATGTCACCGTGTGCC 62.069 55.000 9.42 0.00 36.79 5.01
430 434 2.669569 GCATGTCACCGTGTGCCT 60.670 61.111 0.00 0.00 32.98 4.75
431 435 2.260869 GCATGTCACCGTGTGCCTT 61.261 57.895 0.00 0.00 32.98 4.35
432 436 1.575922 CATGTCACCGTGTGCCTTG 59.424 57.895 0.00 0.00 32.98 3.61
433 437 2.260869 ATGTCACCGTGTGCCTTGC 61.261 57.895 0.00 0.00 32.98 4.01
434 438 4.012895 GTCACCGTGTGCCTTGCG 62.013 66.667 0.00 0.00 32.98 4.85
446 450 3.603144 CCTTGCGGCCAAAATTCAA 57.397 47.368 2.24 0.00 0.00 2.69
447 451 1.876322 CCTTGCGGCCAAAATTCAAA 58.124 45.000 2.24 0.00 0.00 2.69
448 452 2.425539 CCTTGCGGCCAAAATTCAAAT 58.574 42.857 2.24 0.00 0.00 2.32
449 453 2.813172 CCTTGCGGCCAAAATTCAAATT 59.187 40.909 2.24 0.00 0.00 1.82
450 454 3.252944 CCTTGCGGCCAAAATTCAAATTT 59.747 39.130 2.24 0.00 40.15 1.82
451 455 4.453819 CCTTGCGGCCAAAATTCAAATTTA 59.546 37.500 2.24 0.00 37.62 1.40
452 456 5.049129 CCTTGCGGCCAAAATTCAAATTTAA 60.049 36.000 2.24 0.00 37.62 1.52
453 457 6.377327 TTGCGGCCAAAATTCAAATTTAAA 57.623 29.167 2.24 0.00 37.62 1.52
454 458 5.752712 TGCGGCCAAAATTCAAATTTAAAC 58.247 33.333 2.24 0.00 37.62 2.01
455 459 5.296780 TGCGGCCAAAATTCAAATTTAAACA 59.703 32.000 2.24 0.00 37.62 2.83
456 460 6.016777 TGCGGCCAAAATTCAAATTTAAACAT 60.017 30.769 2.24 0.00 37.62 2.71
457 461 6.860539 GCGGCCAAAATTCAAATTTAAACATT 59.139 30.769 2.24 0.00 37.62 2.71
458 462 7.148999 GCGGCCAAAATTCAAATTTAAACATTG 60.149 33.333 2.24 8.56 37.62 2.82
459 463 7.859875 CGGCCAAAATTCAAATTTAAACATTGT 59.140 29.630 2.24 0.00 37.62 2.71
460 464 8.966194 GGCCAAAATTCAAATTTAAACATTGTG 58.034 29.630 0.00 6.07 37.62 3.33
461 465 9.727627 GCCAAAATTCAAATTTAAACATTGTGA 57.272 25.926 12.70 0.00 37.62 3.58
511 515 8.202745 GCTCATAGCACATATTAAGATAACCC 57.797 38.462 0.00 0.00 41.89 4.11
512 516 7.281100 GCTCATAGCACATATTAAGATAACCCC 59.719 40.741 0.00 0.00 41.89 4.95
513 517 8.449423 TCATAGCACATATTAAGATAACCCCT 57.551 34.615 0.00 0.00 0.00 4.79
514 518 9.555411 TCATAGCACATATTAAGATAACCCCTA 57.445 33.333 0.00 0.00 0.00 3.53
518 522 9.930158 AGCACATATTAAGATAACCCCTAAAAA 57.070 29.630 0.00 0.00 0.00 1.94
541 545 8.574196 AAAATTCAGATCAAAATTCGAAACGT 57.426 26.923 0.00 0.00 0.00 3.99
542 546 9.672086 AAAATTCAGATCAAAATTCGAAACGTA 57.328 25.926 0.00 0.00 0.00 3.57
543 547 8.655378 AATTCAGATCAAAATTCGAAACGTAC 57.345 30.769 0.00 0.00 0.00 3.67
544 548 6.772770 TCAGATCAAAATTCGAAACGTACA 57.227 33.333 0.00 0.00 0.00 2.90
545 549 7.359262 TCAGATCAAAATTCGAAACGTACAT 57.641 32.000 0.00 0.00 0.00 2.29
546 550 7.453034 TCAGATCAAAATTCGAAACGTACATC 58.547 34.615 0.00 0.31 0.00 3.06
547 551 6.405191 CAGATCAAAATTCGAAACGTACATCG 59.595 38.462 0.00 10.90 46.00 3.84
548 552 5.825905 TCAAAATTCGAAACGTACATCGA 57.174 34.783 14.57 14.57 45.48 3.59
554 558 3.887741 TCGAAACGTACATCGAGAAACA 58.112 40.909 14.57 0.00 42.61 2.83
555 559 4.289342 TCGAAACGTACATCGAGAAACAA 58.711 39.130 14.57 0.00 42.61 2.83
556 560 4.739228 TCGAAACGTACATCGAGAAACAAA 59.261 37.500 14.57 0.00 42.61 2.83
557 561 5.231779 TCGAAACGTACATCGAGAAACAAAA 59.768 36.000 14.57 0.00 42.61 2.44
558 562 5.897518 CGAAACGTACATCGAGAAACAAAAA 59.102 36.000 11.53 0.00 41.43 1.94
593 597 9.290988 TCAGATATGAATAGTCTACAGAGAACC 57.709 37.037 0.00 0.00 31.96 3.62
594 598 9.072375 CAGATATGAATAGTCTACAGAGAACCA 57.928 37.037 0.00 0.00 31.96 3.67
595 599 9.821240 AGATATGAATAGTCTACAGAGAACCAT 57.179 33.333 0.00 0.00 31.96 3.55
598 602 6.796426 TGAATAGTCTACAGAGAACCATTCG 58.204 40.000 0.00 0.00 32.81 3.34
599 603 3.512033 AGTCTACAGAGAACCATTCGC 57.488 47.619 0.00 0.00 31.96 4.70
600 604 2.159366 AGTCTACAGAGAACCATTCGCG 60.159 50.000 0.00 0.00 34.46 5.87
601 605 2.089201 TCTACAGAGAACCATTCGCGA 58.911 47.619 3.71 3.71 34.46 5.87
602 606 2.490509 TCTACAGAGAACCATTCGCGAA 59.509 45.455 25.66 25.66 34.46 4.70
603 607 1.429463 ACAGAGAACCATTCGCGAAC 58.571 50.000 26.00 11.20 34.46 3.95
604 608 1.000955 ACAGAGAACCATTCGCGAACT 59.999 47.619 26.00 16.33 34.46 3.01
605 609 2.230508 ACAGAGAACCATTCGCGAACTA 59.769 45.455 26.00 1.47 34.46 2.24
606 610 3.119101 ACAGAGAACCATTCGCGAACTAT 60.119 43.478 26.00 10.77 34.46 2.12
607 611 3.865745 CAGAGAACCATTCGCGAACTATT 59.134 43.478 26.00 17.65 34.46 1.73
608 612 4.330074 CAGAGAACCATTCGCGAACTATTT 59.670 41.667 26.00 14.62 34.46 1.40
609 613 5.518847 CAGAGAACCATTCGCGAACTATTTA 59.481 40.000 26.00 0.00 34.46 1.40
610 614 6.201044 CAGAGAACCATTCGCGAACTATTTAT 59.799 38.462 26.00 12.04 34.46 1.40
611 615 6.201044 AGAGAACCATTCGCGAACTATTTATG 59.799 38.462 26.00 16.14 34.46 1.90
612 616 6.046593 AGAACCATTCGCGAACTATTTATGA 58.953 36.000 26.00 0.00 34.02 2.15
613 617 5.652744 ACCATTCGCGAACTATTTATGAC 57.347 39.130 26.00 0.00 0.00 3.06
614 618 5.113383 ACCATTCGCGAACTATTTATGACA 58.887 37.500 26.00 0.00 0.00 3.58
615 619 5.583061 ACCATTCGCGAACTATTTATGACAA 59.417 36.000 26.00 0.00 0.00 3.18
616 620 6.092944 ACCATTCGCGAACTATTTATGACAAA 59.907 34.615 26.00 0.00 0.00 2.83
617 621 7.132213 CCATTCGCGAACTATTTATGACAAAT 58.868 34.615 26.00 0.00 0.00 2.32
618 622 7.643764 CCATTCGCGAACTATTTATGACAAATT 59.356 33.333 26.00 0.00 0.00 1.82
619 623 9.009327 CATTCGCGAACTATTTATGACAAATTT 57.991 29.630 26.00 0.00 0.00 1.82
620 624 8.595781 TTCGCGAACTATTTATGACAAATTTC 57.404 30.769 19.38 0.00 0.00 2.17
621 625 7.970384 TCGCGAACTATTTATGACAAATTTCT 58.030 30.769 6.20 0.00 0.00 2.52
622 626 8.114290 TCGCGAACTATTTATGACAAATTTCTC 58.886 33.333 6.20 0.00 0.00 2.87
623 627 8.116753 CGCGAACTATTTATGACAAATTTCTCT 58.883 33.333 0.00 0.00 0.00 3.10
624 628 9.774742 GCGAACTATTTATGACAAATTTCTCTT 57.225 29.630 0.00 0.00 0.00 2.85
660 664 9.558648 TTGATGTATGTTTCGAATTTTGATCTG 57.441 29.630 0.00 0.00 0.00 2.90
661 665 8.945057 TGATGTATGTTTCGAATTTTGATCTGA 58.055 29.630 0.00 0.00 0.00 3.27
662 666 9.941664 GATGTATGTTTCGAATTTTGATCTGAT 57.058 29.630 0.00 0.00 0.00 2.90
690 694 9.793259 TTTTAGGGATTATCTTAATAGGTGCTG 57.207 33.333 0.00 0.00 0.00 4.41
691 695 8.506196 TTAGGGATTATCTTAATAGGTGCTGT 57.494 34.615 0.00 0.00 0.00 4.40
692 696 6.773638 AGGGATTATCTTAATAGGTGCTGTG 58.226 40.000 0.00 0.00 0.00 3.66
693 697 6.558775 AGGGATTATCTTAATAGGTGCTGTGA 59.441 38.462 0.00 0.00 0.00 3.58
694 698 7.072454 AGGGATTATCTTAATAGGTGCTGTGAA 59.928 37.037 0.00 0.00 0.00 3.18
695 699 7.885399 GGGATTATCTTAATAGGTGCTGTGAAT 59.115 37.037 0.00 0.00 0.00 2.57
696 700 9.944376 GGATTATCTTAATAGGTGCTGTGAATA 57.056 33.333 0.00 0.00 0.00 1.75
699 703 7.678947 ATCTTAATAGGTGCTGTGAATATGC 57.321 36.000 0.00 0.00 0.00 3.14
700 704 6.591001 TCTTAATAGGTGCTGTGAATATGCA 58.409 36.000 0.00 0.00 0.00 3.96
701 705 7.226441 TCTTAATAGGTGCTGTGAATATGCAT 58.774 34.615 3.79 3.79 39.00 3.96
702 706 5.700722 AATAGGTGCTGTGAATATGCATG 57.299 39.130 10.16 0.00 39.00 4.06
703 707 3.286329 AGGTGCTGTGAATATGCATGA 57.714 42.857 10.16 0.00 39.00 3.07
704 708 3.828921 AGGTGCTGTGAATATGCATGAT 58.171 40.909 10.16 0.00 39.00 2.45
705 709 4.212716 AGGTGCTGTGAATATGCATGATT 58.787 39.130 10.16 5.33 39.00 2.57
706 710 4.647853 AGGTGCTGTGAATATGCATGATTT 59.352 37.500 10.16 0.00 39.00 2.17
707 711 5.128171 AGGTGCTGTGAATATGCATGATTTT 59.872 36.000 10.16 0.00 39.00 1.82
708 712 5.813672 GGTGCTGTGAATATGCATGATTTTT 59.186 36.000 10.16 0.00 39.00 1.94
745 749 9.798885 TTCGCAATGTTTAAATTTAAATTTCGG 57.201 25.926 25.50 13.98 39.24 4.30
746 750 7.952637 TCGCAATGTTTAAATTTAAATTTCGGC 59.047 29.630 25.50 19.73 39.24 5.54
747 751 7.215381 CGCAATGTTTAAATTTAAATTTCGGCC 59.785 33.333 25.50 14.38 39.24 6.13
748 752 7.215381 GCAATGTTTAAATTTAAATTTCGGCCG 59.785 33.333 25.50 22.12 39.24 6.13
749 753 6.154451 TGTTTAAATTTAAATTTCGGCCGC 57.846 33.333 25.50 13.45 39.24 6.53
750 754 5.694910 TGTTTAAATTTAAATTTCGGCCGCA 59.305 32.000 25.50 6.92 39.24 5.69
751 755 6.202188 TGTTTAAATTTAAATTTCGGCCGCAA 59.798 30.769 25.50 18.53 39.24 4.85
752 756 6.780706 TTAAATTTAAATTTCGGCCGCAAA 57.219 29.167 25.50 21.29 39.24 3.68
753 757 4.919677 AATTTAAATTTCGGCCGCAAAG 57.080 36.364 23.51 0.00 0.00 2.77
754 758 1.704070 TTAAATTTCGGCCGCAAAGC 58.296 45.000 23.51 0.00 0.00 3.51
755 759 0.598562 TAAATTTCGGCCGCAAAGCA 59.401 45.000 23.51 0.00 0.00 3.91
756 760 0.943835 AAATTTCGGCCGCAAAGCAC 60.944 50.000 23.51 0.00 0.00 4.40
757 761 2.081425 AATTTCGGCCGCAAAGCACA 62.081 50.000 23.51 0.00 0.00 4.57
758 762 2.747507 ATTTCGGCCGCAAAGCACAC 62.748 55.000 23.51 0.00 0.00 3.82
763 767 3.276091 CCGCAAAGCACACGGTGA 61.276 61.111 16.29 0.00 42.01 4.02
764 768 2.052237 CGCAAAGCACACGGTGAC 60.052 61.111 16.29 6.48 35.23 3.67
765 769 2.818487 CGCAAAGCACACGGTGACA 61.818 57.895 16.29 0.00 35.23 3.58
766 770 1.654220 GCAAAGCACACGGTGACAT 59.346 52.632 16.29 0.00 35.23 3.06
767 771 0.661187 GCAAAGCACACGGTGACATG 60.661 55.000 16.29 3.91 35.23 3.21
768 772 0.661187 CAAAGCACACGGTGACATGC 60.661 55.000 16.29 14.20 35.23 4.06
769 773 1.100463 AAAGCACACGGTGACATGCA 61.100 50.000 20.02 0.00 40.63 3.96
770 774 1.100463 AAGCACACGGTGACATGCAA 61.100 50.000 20.02 0.00 40.63 4.08
771 775 1.100463 AGCACACGGTGACATGCAAA 61.100 50.000 20.02 0.00 40.63 3.68
772 776 0.934436 GCACACGGTGACATGCAAAC 60.934 55.000 16.29 0.00 38.00 2.93
773 777 0.657077 CACACGGTGACATGCAAACG 60.657 55.000 16.29 4.26 35.23 3.60
774 778 1.092921 ACACGGTGACATGCAAACGT 61.093 50.000 16.29 5.54 41.25 3.99
775 779 0.657077 CACGGTGACATGCAAACGTG 60.657 55.000 20.25 20.25 46.35 4.49
786 790 3.460114 CAAACGTGCATGTCACCTG 57.540 52.632 12.96 4.18 42.69 4.00
787 791 0.943673 CAAACGTGCATGTCACCTGA 59.056 50.000 12.96 0.00 42.69 3.86
788 792 1.536766 CAAACGTGCATGTCACCTGAT 59.463 47.619 12.96 0.00 42.69 2.90
789 793 1.442769 AACGTGCATGTCACCTGATC 58.557 50.000 12.96 0.00 42.69 2.92
790 794 0.610174 ACGTGCATGTCACCTGATCT 59.390 50.000 5.51 0.00 42.69 2.75
791 795 1.284657 CGTGCATGTCACCTGATCTC 58.715 55.000 12.62 0.00 42.69 2.75
792 796 1.134877 CGTGCATGTCACCTGATCTCT 60.135 52.381 12.62 0.00 42.69 3.10
793 797 2.277969 GTGCATGTCACCTGATCTCTG 58.722 52.381 8.54 0.00 39.79 3.35
794 798 1.904537 TGCATGTCACCTGATCTCTGT 59.095 47.619 0.00 0.00 0.00 3.41
795 799 2.093816 TGCATGTCACCTGATCTCTGTC 60.094 50.000 0.00 0.00 0.00 3.51
796 800 2.741228 GCATGTCACCTGATCTCTGTCC 60.741 54.545 0.00 0.00 0.00 4.02
797 801 2.309136 TGTCACCTGATCTCTGTCCA 57.691 50.000 0.00 0.00 0.00 4.02
798 802 2.174360 TGTCACCTGATCTCTGTCCAG 58.826 52.381 0.00 0.00 0.00 3.86
799 803 1.134848 GTCACCTGATCTCTGTCCAGC 60.135 57.143 0.00 0.00 0.00 4.85
800 804 0.900421 CACCTGATCTCTGTCCAGCA 59.100 55.000 0.00 0.00 0.00 4.41
801 805 1.485480 CACCTGATCTCTGTCCAGCAT 59.515 52.381 0.00 0.00 0.00 3.79
802 806 1.485480 ACCTGATCTCTGTCCAGCATG 59.515 52.381 0.00 0.00 0.00 4.06
803 807 1.761198 CCTGATCTCTGTCCAGCATGA 59.239 52.381 0.00 0.00 39.69 3.07
804 808 2.224090 CCTGATCTCTGTCCAGCATGAG 60.224 54.545 0.00 0.00 39.69 2.90
805 809 2.431419 CTGATCTCTGTCCAGCATGAGT 59.569 50.000 0.00 0.00 39.69 3.41
806 810 3.635591 TGATCTCTGTCCAGCATGAGTA 58.364 45.455 0.00 0.00 39.69 2.59
807 811 3.635836 TGATCTCTGTCCAGCATGAGTAG 59.364 47.826 0.00 0.00 39.69 2.57
808 812 3.372440 TCTCTGTCCAGCATGAGTAGA 57.628 47.619 0.00 0.00 39.69 2.59
809 813 3.020274 TCTCTGTCCAGCATGAGTAGAC 58.980 50.000 0.00 0.00 39.69 2.59
810 814 2.757314 CTCTGTCCAGCATGAGTAGACA 59.243 50.000 0.00 2.51 39.69 3.41
1035 1052 1.138464 GGAGGAGACAAATACCGGTCC 59.862 57.143 12.40 2.76 34.58 4.46
1160 1479 3.674997 GAATGCTTCCTTCAGTGGTGTA 58.325 45.455 0.00 0.00 0.00 2.90
1177 1496 5.962433 TGGTGTACACAGATTAGTAGCTTC 58.038 41.667 26.51 5.38 0.00 3.86
1184 1503 4.032217 CACAGATTAGTAGCTTCAACTGCG 59.968 45.833 0.00 0.00 35.28 5.18
1214 1533 6.806739 CGTCTTACATTAGTGAACAGATGTGA 59.193 38.462 0.00 3.94 34.76 3.58
1251 1582 9.803315 AAAAGTTCTTCATCTTGGAAGTTAAAC 57.197 29.630 0.00 0.00 43.72 2.01
1310 1643 1.190643 GAGGGGTCTGTGGAAGAGAG 58.809 60.000 0.00 0.00 36.66 3.20
1345 1678 0.179936 CAAGACCTGGGAGATGGAGC 59.820 60.000 0.00 0.00 0.00 4.70
1848 2276 7.962964 ATTAGTGGTGGTATATCGATTGTTG 57.037 36.000 1.71 0.00 0.00 3.33
1849 2277 4.127171 AGTGGTGGTATATCGATTGTTGC 58.873 43.478 1.71 0.00 0.00 4.17
1865 2299 7.011576 TCGATTGTTGCTGTTCAAAGTTAAGTA 59.988 33.333 0.00 0.00 36.26 2.24
1871 2305 5.758296 TGCTGTTCAAAGTTAAGTAGTCTGG 59.242 40.000 0.00 0.00 0.00 3.86
1886 2322 5.952347 AGTAGTCTGGAACACTGTGATGATA 59.048 40.000 15.86 0.00 0.00 2.15
1896 2332 7.011482 GGAACACTGTGATGATAATAGGTTGAC 59.989 40.741 15.86 0.00 0.00 3.18
1972 2409 0.952984 AAGCTTCTTGTCTGCGCCTC 60.953 55.000 4.18 0.00 0.00 4.70
1975 2412 1.004560 TTCTTGTCTGCGCCTCCTG 60.005 57.895 4.18 0.00 0.00 3.86
2029 2475 2.426738 CCTGTGATGAGAGGAGACTGAC 59.573 54.545 0.00 0.00 44.43 3.51
2034 2480 3.404141 GAGAGGAGACTGACGCGCC 62.404 68.421 5.73 0.00 44.43 6.53
2064 2510 3.306973 CGACGAAACATGCATGTCACTAT 59.693 43.478 31.45 13.87 40.80 2.12
2073 2519 8.824159 AACATGCATGTCACTATCTAGTATTC 57.176 34.615 31.45 0.00 40.80 1.75
2076 2522 7.220741 TGCATGTCACTATCTAGTATTCTCC 57.779 40.000 0.00 0.00 34.13 3.71
2109 2556 7.227873 TCGGATTTGGCTATATTCCATGTAAA 58.772 34.615 0.00 0.00 32.92 2.01
2224 2676 0.546122 TCAAATGGGCGATGCTAGGT 59.454 50.000 0.00 0.00 0.00 3.08
2259 2712 1.295423 CCGTCCGATTGGTCCAACT 59.705 57.895 6.41 0.00 36.30 3.16
2281 2734 3.451178 TGTAGCTGTTTGATCCCTACCTC 59.549 47.826 0.00 0.00 0.00 3.85
2287 2740 4.431378 TGTTTGATCCCTACCTCACCTTA 58.569 43.478 0.00 0.00 0.00 2.69
2356 2809 0.108756 GGAGGTGTTGCTAGTCCGTC 60.109 60.000 0.00 0.00 0.00 4.79
2375 2829 2.182284 CATGGCCATGCAACACCG 59.818 61.111 31.95 6.93 31.39 4.94
2392 2846 3.139029 CGTAGGAGTGTTGGCTTCC 57.861 57.895 0.00 0.00 0.00 3.46
2393 2847 0.391263 CGTAGGAGTGTTGGCTTCCC 60.391 60.000 0.00 0.00 0.00 3.97
2394 2848 0.391263 GTAGGAGTGTTGGCTTCCCG 60.391 60.000 0.00 0.00 0.00 5.14
2395 2849 1.550130 TAGGAGTGTTGGCTTCCCGG 61.550 60.000 0.00 0.00 0.00 5.73
2396 2850 3.056328 GAGTGTTGGCTTCCCGGC 61.056 66.667 0.00 0.00 38.97 6.13
2397 2851 3.553095 GAGTGTTGGCTTCCCGGCT 62.553 63.158 0.00 0.00 39.32 5.52
2398 2852 2.597510 GTGTTGGCTTCCCGGCTT 60.598 61.111 0.00 0.00 39.32 4.35
2399 2853 2.197324 TGTTGGCTTCCCGGCTTT 59.803 55.556 0.00 0.00 39.32 3.51
2400 2854 2.199652 TGTTGGCTTCCCGGCTTTG 61.200 57.895 0.00 0.00 39.32 2.77
2401 2855 1.901464 GTTGGCTTCCCGGCTTTGA 60.901 57.895 0.00 0.00 39.32 2.69
2402 2856 1.603455 TTGGCTTCCCGGCTTTGAG 60.603 57.895 0.00 0.00 39.32 3.02
2403 2857 3.443925 GGCTTCCCGGCTTTGAGC 61.444 66.667 0.00 0.00 41.46 4.26
2404 2858 3.804193 GCTTCCCGGCTTTGAGCG 61.804 66.667 0.00 0.00 43.62 5.03
2405 2859 2.047274 CTTCCCGGCTTTGAGCGA 60.047 61.111 0.00 0.00 43.62 4.93
2406 2860 2.358247 TTCCCGGCTTTGAGCGAC 60.358 61.111 0.00 0.00 43.62 5.19
2407 2861 3.894547 TTCCCGGCTTTGAGCGACC 62.895 63.158 0.00 0.00 43.62 4.79
2408 2862 4.394712 CCCGGCTTTGAGCGACCT 62.395 66.667 0.00 0.00 43.62 3.85
2409 2863 2.815647 CCGGCTTTGAGCGACCTC 60.816 66.667 0.00 0.00 43.62 3.85
2410 2864 2.048222 CGGCTTTGAGCGACCTCA 60.048 61.111 0.00 0.00 46.03 3.86
2416 2870 2.917227 TGAGCGACCTCACAGCCA 60.917 61.111 0.00 0.00 42.98 4.75
2417 2871 2.125753 GAGCGACCTCACAGCCAG 60.126 66.667 0.00 0.00 38.03 4.85
2418 2872 3.655810 GAGCGACCTCACAGCCAGG 62.656 68.421 0.00 0.00 38.03 4.45
2420 2874 3.699894 CGACCTCACAGCCAGGCT 61.700 66.667 8.70 8.70 40.77 4.58
2421 2875 2.753029 GACCTCACAGCCAGGCTT 59.247 61.111 12.86 0.00 36.40 4.35
2422 2876 1.376553 GACCTCACAGCCAGGCTTC 60.377 63.158 12.86 1.21 36.40 3.86
2423 2877 2.116983 GACCTCACAGCCAGGCTTCA 62.117 60.000 12.86 0.00 36.40 3.02
2424 2878 1.302285 CCTCACAGCCAGGCTTCAT 59.698 57.895 12.86 0.00 36.40 2.57
2425 2879 0.747283 CCTCACAGCCAGGCTTCATC 60.747 60.000 12.86 0.00 36.40 2.92
2426 2880 0.747283 CTCACAGCCAGGCTTCATCC 60.747 60.000 12.86 0.00 36.40 3.51
2427 2881 1.001764 CACAGCCAGGCTTCATCCA 60.002 57.895 12.86 0.00 36.40 3.41
2433 2887 1.915141 CCAGGCTTCATCCAAGTGTT 58.085 50.000 0.00 0.00 34.13 3.32
2449 2903 1.901464 GTTGGCTTCCCGGCTTTGA 60.901 57.895 0.00 0.00 39.32 2.69
2557 3012 1.375523 GGTTGACTTCGACGGGCAT 60.376 57.895 0.00 0.00 0.00 4.40
2560 3016 2.277084 GTTGACTTCGACGGGCATTAT 58.723 47.619 0.00 0.00 0.00 1.28
2571 3027 5.100259 CGACGGGCATTATAAACTATCGAT 58.900 41.667 2.16 2.16 0.00 3.59
2622 3080 4.388499 ACGGCGGTCCACATCACC 62.388 66.667 13.24 0.00 0.00 4.02
2631 3089 1.276421 GTCCACATCACCTGTAGCTGT 59.724 52.381 0.00 0.00 35.91 4.40
2649 3107 4.016444 GCTGTTGGGATCATGGAAAAGTA 58.984 43.478 0.00 0.00 0.00 2.24
2678 3137 5.466393 AGGCAAAACATAACAAACTTGATGC 59.534 36.000 0.00 0.00 0.00 3.91
2681 3140 6.200665 GCAAAACATAACAAACTTGATGCTGA 59.799 34.615 0.00 0.00 0.00 4.26
2726 3189 1.272807 CTCCGGGGTGAAAACCTAGA 58.727 55.000 0.00 0.00 0.00 2.43
2733 3196 4.384208 CGGGGTGAAAACCTAGATCTGAAT 60.384 45.833 5.18 0.00 0.00 2.57
2775 3239 6.148948 GCAATGGCGATATTTTTATGCTGTA 58.851 36.000 0.00 0.00 0.00 2.74
2776 3240 6.808212 GCAATGGCGATATTTTTATGCTGTAT 59.192 34.615 0.00 0.00 0.00 2.29
2792 3257 5.252547 TGCTGTATCTTGTTGAAGGCATTA 58.747 37.500 0.00 0.00 0.00 1.90
2793 3258 5.887598 TGCTGTATCTTGTTGAAGGCATTAT 59.112 36.000 0.00 0.00 0.00 1.28
2794 3259 6.038603 TGCTGTATCTTGTTGAAGGCATTATC 59.961 38.462 0.00 0.00 0.00 1.75
2812 3277 4.974792 CGGATATGCTCGGACTGG 57.025 61.111 0.00 0.00 0.00 4.00
2828 3293 4.682787 GGACTGGTTTTTCAAGGTGAAAG 58.317 43.478 3.83 0.00 45.77 2.62
2881 3349 4.992511 TGGCGGCGGTTTAGCGTT 62.993 61.111 9.78 0.00 38.18 4.84
2900 3368 3.095347 GCTACCTCCCTGAAGGCGG 62.095 68.421 0.00 0.00 40.34 6.13
2930 3399 2.983229 AGAATCTCACCATCTGTGTGC 58.017 47.619 0.00 0.00 45.61 4.57
2938 3408 1.092348 CCATCTGTGTGCTGTCATGG 58.908 55.000 0.00 0.00 0.00 3.66
2949 3419 2.509131 TGCTGTCATGGGATGATTGGTA 59.491 45.455 0.00 0.00 42.04 3.25
2950 3420 3.053768 TGCTGTCATGGGATGATTGGTAA 60.054 43.478 0.00 0.00 42.04 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 8.038862 AGCTGATATAATTTTCCTTCCAGAGA 57.961 34.615 0.00 0.00 0.00 3.10
56 57 7.935755 TGAGCTGATATAATTTTCCTTCCAGAG 59.064 37.037 0.00 0.00 0.00 3.35
116 117 2.283529 CCTAGTCACCGCCTGTGGT 61.284 63.158 0.00 0.00 45.48 4.16
158 159 4.424061 TGTTCGGATCTTTGCAGATTTG 57.576 40.909 0.00 0.00 40.14 2.32
159 160 4.616835 GCTTGTTCGGATCTTTGCAGATTT 60.617 41.667 0.00 0.00 40.14 2.17
191 195 5.662674 AGTCGCTAGTAGAGTTTGGAATT 57.337 39.130 0.00 0.00 0.00 2.17
302 306 7.905604 AAGAAAGTTTTGCTTTTGTAAAGCT 57.094 28.000 20.83 3.34 46.54 3.74
309 313 7.826260 TTGGACTAAGAAAGTTTTGCTTTTG 57.174 32.000 0.00 0.00 46.54 2.44
333 337 6.733145 TGCAGAAAAGTTTTGCTTTGTTTTT 58.267 28.000 5.36 0.00 45.91 1.94
334 338 6.311055 TGCAGAAAAGTTTTGCTTTGTTTT 57.689 29.167 5.36 0.00 45.91 2.43
335 339 5.938438 TGCAGAAAAGTTTTGCTTTGTTT 57.062 30.435 5.36 0.00 45.91 2.83
336 340 5.938438 TTGCAGAAAAGTTTTGCTTTGTT 57.062 30.435 5.36 0.00 45.91 2.83
337 341 5.106594 CCTTTGCAGAAAAGTTTTGCTTTGT 60.107 36.000 5.36 0.00 45.91 2.83
338 342 5.326292 CCTTTGCAGAAAAGTTTTGCTTTG 58.674 37.500 5.36 0.64 45.91 2.77
389 393 1.134877 CGTGCATGTCACCTGATCTCT 60.135 52.381 12.62 0.00 42.69 3.10
390 394 1.284657 CGTGCATGTCACCTGATCTC 58.715 55.000 12.62 0.00 42.69 2.75
391 395 0.610174 ACGTGCATGTCACCTGATCT 59.390 50.000 5.51 0.00 42.69 2.75
392 396 1.442769 AACGTGCATGTCACCTGATC 58.557 50.000 12.96 0.00 42.69 2.92
393 397 1.536766 CAAACGTGCATGTCACCTGAT 59.463 47.619 12.96 0.00 42.69 2.90
394 398 0.943673 CAAACGTGCATGTCACCTGA 59.056 50.000 12.96 0.00 42.69 3.86
395 399 3.460114 CAAACGTGCATGTCACCTG 57.540 52.632 12.96 4.18 42.69 4.00
406 410 0.657077 CACGGTGACATGCAAACGTG 60.657 55.000 20.25 20.25 46.35 4.49
407 411 1.092921 ACACGGTGACATGCAAACGT 61.093 50.000 16.29 5.54 41.25 3.99
408 412 0.657077 CACACGGTGACATGCAAACG 60.657 55.000 16.29 4.26 35.23 3.60
409 413 0.934436 GCACACGGTGACATGCAAAC 60.934 55.000 16.29 0.00 38.00 2.93
410 414 1.358402 GCACACGGTGACATGCAAA 59.642 52.632 16.29 0.00 38.00 3.68
411 415 2.551006 GGCACACGGTGACATGCAA 61.551 57.895 16.29 0.00 41.94 4.08
412 416 2.956799 AAGGCACACGGTGACATGCA 62.957 55.000 16.29 0.00 45.35 3.96
413 417 2.260869 AAGGCACACGGTGACATGC 61.261 57.895 16.29 13.96 45.35 4.06
414 418 1.575922 CAAGGCACACGGTGACATG 59.424 57.895 16.29 3.91 45.35 3.21
415 419 2.260869 GCAAGGCACACGGTGACAT 61.261 57.895 16.29 0.98 45.35 3.06
416 420 2.899838 GCAAGGCACACGGTGACA 60.900 61.111 16.29 0.00 45.35 3.58
417 421 4.012895 CGCAAGGCACACGGTGAC 62.013 66.667 16.29 6.26 42.83 3.67
429 433 4.486574 AAATTTGAATTTTGGCCGCAAG 57.513 36.364 0.00 0.00 35.16 4.01
430 434 6.183360 TGTTTAAATTTGAATTTTGGCCGCAA 60.183 30.769 6.98 0.00 39.24 4.85
431 435 5.296780 TGTTTAAATTTGAATTTTGGCCGCA 59.703 32.000 6.98 0.00 39.24 5.69
432 436 5.752712 TGTTTAAATTTGAATTTTGGCCGC 58.247 33.333 6.98 0.00 39.24 6.53
433 437 7.859875 ACAATGTTTAAATTTGAATTTTGGCCG 59.140 29.630 16.34 0.00 39.24 6.13
434 438 8.966194 CACAATGTTTAAATTTGAATTTTGGCC 58.034 29.630 16.34 0.00 39.24 5.36
435 439 9.727627 TCACAATGTTTAAATTTGAATTTTGGC 57.272 25.926 16.34 0.28 39.24 4.52
486 490 7.281100 GGGGTTATCTTAATATGTGCTATGAGC 59.719 40.741 0.00 0.00 42.82 4.26
487 491 8.543774 AGGGGTTATCTTAATATGTGCTATGAG 58.456 37.037 0.00 0.00 0.00 2.90
488 492 8.449423 AGGGGTTATCTTAATATGTGCTATGA 57.551 34.615 0.00 0.00 0.00 2.15
492 496 9.930158 TTTTTAGGGGTTATCTTAATATGTGCT 57.070 29.630 0.00 0.00 0.00 4.40
515 519 9.030301 ACGTTTCGAATTTTGATCTGAATTTTT 57.970 25.926 0.00 0.00 0.00 1.94
516 520 8.574196 ACGTTTCGAATTTTGATCTGAATTTT 57.426 26.923 0.00 0.00 0.00 1.82
517 521 9.113876 GTACGTTTCGAATTTTGATCTGAATTT 57.886 29.630 0.00 0.81 0.00 1.82
518 522 8.286800 TGTACGTTTCGAATTTTGATCTGAATT 58.713 29.630 0.00 6.58 0.00 2.17
519 523 7.802738 TGTACGTTTCGAATTTTGATCTGAAT 58.197 30.769 0.00 0.00 0.00 2.57
520 524 7.179927 TGTACGTTTCGAATTTTGATCTGAA 57.820 32.000 0.00 0.00 0.00 3.02
521 525 6.772770 TGTACGTTTCGAATTTTGATCTGA 57.227 33.333 0.00 0.00 0.00 3.27
522 526 6.405191 CGATGTACGTTTCGAATTTTGATCTG 59.595 38.462 0.00 0.00 37.55 2.90
523 527 6.309494 TCGATGTACGTTTCGAATTTTGATCT 59.691 34.615 13.34 0.00 41.06 2.75
524 528 6.463478 TCGATGTACGTTTCGAATTTTGATC 58.537 36.000 13.34 0.00 41.06 2.92
525 529 6.309494 TCTCGATGTACGTTTCGAATTTTGAT 59.691 34.615 15.57 0.00 43.14 2.57
526 530 5.630264 TCTCGATGTACGTTTCGAATTTTGA 59.370 36.000 15.57 8.71 43.14 2.69
527 531 5.839188 TCTCGATGTACGTTTCGAATTTTG 58.161 37.500 15.57 7.05 43.14 2.44
528 532 6.456447 TTCTCGATGTACGTTTCGAATTTT 57.544 33.333 15.57 0.00 43.14 1.82
529 533 6.074195 TGTTTCTCGATGTACGTTTCGAATTT 60.074 34.615 15.57 0.00 43.14 1.82
530 534 5.403166 TGTTTCTCGATGTACGTTTCGAATT 59.597 36.000 15.57 0.00 43.14 2.17
531 535 4.919168 TGTTTCTCGATGTACGTTTCGAAT 59.081 37.500 15.57 0.00 43.14 3.34
532 536 4.289342 TGTTTCTCGATGTACGTTTCGAA 58.711 39.130 15.57 0.00 43.14 3.71
533 537 3.887741 TGTTTCTCGATGTACGTTTCGA 58.112 40.909 14.48 14.48 41.70 3.71
534 538 4.618338 TTGTTTCTCGATGTACGTTTCG 57.382 40.909 0.00 0.46 43.13 3.46
567 571 9.290988 GGTTCTCTGTAGACTATTCATATCTGA 57.709 37.037 0.00 0.00 0.00 3.27
568 572 9.072375 TGGTTCTCTGTAGACTATTCATATCTG 57.928 37.037 0.00 0.00 0.00 2.90
569 573 9.821240 ATGGTTCTCTGTAGACTATTCATATCT 57.179 33.333 0.00 0.00 0.00 1.98
572 576 8.568794 CGAATGGTTCTCTGTAGACTATTCATA 58.431 37.037 10.80 0.00 34.36 2.15
573 577 7.429633 CGAATGGTTCTCTGTAGACTATTCAT 58.570 38.462 10.80 0.00 34.36 2.57
574 578 6.680625 GCGAATGGTTCTCTGTAGACTATTCA 60.681 42.308 10.80 0.00 34.36 2.57
575 579 5.688176 GCGAATGGTTCTCTGTAGACTATTC 59.312 44.000 0.00 0.00 33.08 1.75
576 580 5.593010 GCGAATGGTTCTCTGTAGACTATT 58.407 41.667 0.00 0.00 0.00 1.73
577 581 4.261238 CGCGAATGGTTCTCTGTAGACTAT 60.261 45.833 0.00 0.00 0.00 2.12
578 582 3.064958 CGCGAATGGTTCTCTGTAGACTA 59.935 47.826 0.00 0.00 0.00 2.59
579 583 2.159366 CGCGAATGGTTCTCTGTAGACT 60.159 50.000 0.00 0.00 0.00 3.24
580 584 2.159421 TCGCGAATGGTTCTCTGTAGAC 60.159 50.000 6.20 0.00 0.00 2.59
581 585 2.089201 TCGCGAATGGTTCTCTGTAGA 58.911 47.619 6.20 0.00 0.00 2.59
582 586 2.561733 TCGCGAATGGTTCTCTGTAG 57.438 50.000 6.20 0.00 0.00 2.74
583 587 2.230508 AGTTCGCGAATGGTTCTCTGTA 59.769 45.455 26.23 0.00 0.00 2.74
584 588 1.000955 AGTTCGCGAATGGTTCTCTGT 59.999 47.619 26.23 0.00 0.00 3.41
585 589 1.714794 AGTTCGCGAATGGTTCTCTG 58.285 50.000 26.23 0.00 0.00 3.35
586 590 3.802948 ATAGTTCGCGAATGGTTCTCT 57.197 42.857 26.23 17.04 0.00 3.10
587 591 4.859629 AAATAGTTCGCGAATGGTTCTC 57.140 40.909 26.23 10.10 0.00 2.87
588 592 6.018994 GTCATAAATAGTTCGCGAATGGTTCT 60.019 38.462 26.23 18.49 0.00 3.01
589 593 6.127403 GTCATAAATAGTTCGCGAATGGTTC 58.873 40.000 26.23 11.66 0.00 3.62
590 594 5.583061 TGTCATAAATAGTTCGCGAATGGTT 59.417 36.000 26.23 17.82 0.00 3.67
591 595 5.113383 TGTCATAAATAGTTCGCGAATGGT 58.887 37.500 26.23 15.00 0.00 3.55
592 596 5.651172 TGTCATAAATAGTTCGCGAATGG 57.349 39.130 26.23 8.49 0.00 3.16
593 597 8.547091 AATTTGTCATAAATAGTTCGCGAATG 57.453 30.769 26.23 16.83 0.00 2.67
594 598 9.221775 GAAATTTGTCATAAATAGTTCGCGAAT 57.778 29.630 26.23 15.84 0.00 3.34
595 599 8.447833 AGAAATTTGTCATAAATAGTTCGCGAA 58.552 29.630 19.38 19.38 0.00 4.70
596 600 7.970384 AGAAATTTGTCATAAATAGTTCGCGA 58.030 30.769 3.71 3.71 0.00 5.87
597 601 8.116753 AGAGAAATTTGTCATAAATAGTTCGCG 58.883 33.333 16.80 0.00 0.00 5.87
598 602 9.774742 AAGAGAAATTTGTCATAAATAGTTCGC 57.225 29.630 16.80 0.00 0.00 4.70
634 638 9.558648 CAGATCAAAATTCGAAACATACATCAA 57.441 29.630 0.00 0.00 0.00 2.57
635 639 8.945057 TCAGATCAAAATTCGAAACATACATCA 58.055 29.630 0.00 0.00 0.00 3.07
636 640 9.941664 ATCAGATCAAAATTCGAAACATACATC 57.058 29.630 0.00 0.31 0.00 3.06
664 668 9.793259 CAGCACCTATTAAGATAATCCCTAAAA 57.207 33.333 0.00 0.00 0.00 1.52
665 669 8.945193 ACAGCACCTATTAAGATAATCCCTAAA 58.055 33.333 0.00 0.00 0.00 1.85
666 670 8.375506 CACAGCACCTATTAAGATAATCCCTAA 58.624 37.037 0.00 0.00 0.00 2.69
667 671 7.733047 TCACAGCACCTATTAAGATAATCCCTA 59.267 37.037 0.00 0.00 0.00 3.53
668 672 6.558775 TCACAGCACCTATTAAGATAATCCCT 59.441 38.462 0.00 0.00 0.00 4.20
669 673 6.769512 TCACAGCACCTATTAAGATAATCCC 58.230 40.000 0.00 0.00 0.00 3.85
670 674 8.854614 ATTCACAGCACCTATTAAGATAATCC 57.145 34.615 0.00 0.00 0.00 3.01
673 677 9.219603 GCATATTCACAGCACCTATTAAGATAA 57.780 33.333 0.00 0.00 0.00 1.75
674 678 8.374743 TGCATATTCACAGCACCTATTAAGATA 58.625 33.333 0.00 0.00 32.55 1.98
675 679 7.226441 TGCATATTCACAGCACCTATTAAGAT 58.774 34.615 0.00 0.00 32.55 2.40
676 680 6.591001 TGCATATTCACAGCACCTATTAAGA 58.409 36.000 0.00 0.00 32.55 2.10
677 681 6.866010 TGCATATTCACAGCACCTATTAAG 57.134 37.500 0.00 0.00 32.55 1.85
678 682 6.997476 TCATGCATATTCACAGCACCTATTAA 59.003 34.615 0.00 0.00 41.60 1.40
679 683 6.532826 TCATGCATATTCACAGCACCTATTA 58.467 36.000 0.00 0.00 41.60 0.98
680 684 5.379187 TCATGCATATTCACAGCACCTATT 58.621 37.500 0.00 0.00 41.60 1.73
681 685 4.976864 TCATGCATATTCACAGCACCTAT 58.023 39.130 0.00 0.00 41.60 2.57
682 686 4.420522 TCATGCATATTCACAGCACCTA 57.579 40.909 0.00 0.00 41.60 3.08
683 687 3.286329 TCATGCATATTCACAGCACCT 57.714 42.857 0.00 0.00 41.60 4.00
684 688 4.579454 AATCATGCATATTCACAGCACC 57.421 40.909 0.00 0.00 41.60 5.01
685 689 6.897259 AAAAATCATGCATATTCACAGCAC 57.103 33.333 0.00 0.00 41.60 4.40
719 723 9.798885 CCGAAATTTAAATTTAAACATTGCGAA 57.201 25.926 25.46 7.11 38.64 4.70
720 724 7.952637 GCCGAAATTTAAATTTAAACATTGCGA 59.047 29.630 25.46 7.67 38.64 5.10
721 725 7.215381 GGCCGAAATTTAAATTTAAACATTGCG 59.785 33.333 22.82 21.42 38.64 4.85
722 726 7.215381 CGGCCGAAATTTAAATTTAAACATTGC 59.785 33.333 24.07 19.29 38.64 3.56
723 727 7.215381 GCGGCCGAAATTTAAATTTAAACATTG 59.785 33.333 33.48 17.04 38.64 2.82
724 728 7.095187 TGCGGCCGAAATTTAAATTTAAACATT 60.095 29.630 33.48 19.41 38.64 2.71
725 729 6.369065 TGCGGCCGAAATTTAAATTTAAACAT 59.631 30.769 33.48 15.14 38.64 2.71
726 730 5.694910 TGCGGCCGAAATTTAAATTTAAACA 59.305 32.000 33.48 7.80 38.64 2.83
727 731 6.154451 TGCGGCCGAAATTTAAATTTAAAC 57.846 33.333 33.48 15.23 38.64 2.01
728 732 6.780706 TTGCGGCCGAAATTTAAATTTAAA 57.219 29.167 33.48 22.20 38.64 1.52
729 733 6.618805 GCTTTGCGGCCGAAATTTAAATTTAA 60.619 34.615 33.48 11.16 38.64 1.52
730 734 5.163943 GCTTTGCGGCCGAAATTTAAATTTA 60.164 36.000 33.48 4.90 38.64 1.40
731 735 4.377943 GCTTTGCGGCCGAAATTTAAATTT 60.378 37.500 33.48 22.95 41.06 1.82
732 736 3.124466 GCTTTGCGGCCGAAATTTAAATT 59.876 39.130 33.48 7.64 0.00 1.82
733 737 2.670905 GCTTTGCGGCCGAAATTTAAAT 59.329 40.909 33.48 0.00 0.00 1.40
734 738 2.062519 GCTTTGCGGCCGAAATTTAAA 58.937 42.857 33.48 16.92 0.00 1.52
735 739 1.000163 TGCTTTGCGGCCGAAATTTAA 60.000 42.857 33.48 8.89 0.00 1.52
736 740 0.598562 TGCTTTGCGGCCGAAATTTA 59.401 45.000 33.48 9.34 0.00 1.40
737 741 0.943835 GTGCTTTGCGGCCGAAATTT 60.944 50.000 33.48 0.00 0.00 1.82
738 742 1.372872 GTGCTTTGCGGCCGAAATT 60.373 52.632 33.48 0.00 0.00 1.82
739 743 2.258286 GTGCTTTGCGGCCGAAAT 59.742 55.556 33.48 0.00 0.00 2.17
740 744 3.212682 TGTGCTTTGCGGCCGAAA 61.213 55.556 33.48 25.41 0.00 3.46
741 745 3.959975 GTGTGCTTTGCGGCCGAA 61.960 61.111 33.48 19.06 0.00 4.30
747 751 2.052237 GTCACCGTGTGCTTTGCG 60.052 61.111 0.00 0.00 32.98 4.85
748 752 0.661187 CATGTCACCGTGTGCTTTGC 60.661 55.000 0.00 0.00 32.98 3.68
749 753 0.661187 GCATGTCACCGTGTGCTTTG 60.661 55.000 5.56 2.13 34.85 2.77
750 754 1.100463 TGCATGTCACCGTGTGCTTT 61.100 50.000 12.32 0.00 38.37 3.51
751 755 1.100463 TTGCATGTCACCGTGTGCTT 61.100 50.000 12.32 0.00 38.37 3.91
752 756 1.100463 TTTGCATGTCACCGTGTGCT 61.100 50.000 12.32 0.00 38.37 4.40
753 757 0.934436 GTTTGCATGTCACCGTGTGC 60.934 55.000 5.81 5.81 38.05 4.57
754 758 0.657077 CGTTTGCATGTCACCGTGTG 60.657 55.000 0.00 0.00 34.45 3.82
755 759 1.092921 ACGTTTGCATGTCACCGTGT 61.093 50.000 0.00 0.00 33.08 4.49
756 760 0.657077 CACGTTTGCATGTCACCGTG 60.657 55.000 18.04 18.04 41.06 4.94
757 761 1.646540 CACGTTTGCATGTCACCGT 59.353 52.632 0.00 1.94 34.15 4.83
758 762 4.513275 CACGTTTGCATGTCACCG 57.487 55.556 0.00 1.34 0.00 4.94
773 777 2.277969 CAGAGATCAGGTGACATGCAC 58.722 52.381 10.63 10.63 46.98 4.57
774 778 1.904537 ACAGAGATCAGGTGACATGCA 59.095 47.619 0.00 0.00 0.00 3.96
775 779 2.548875 GACAGAGATCAGGTGACATGC 58.451 52.381 0.00 0.00 0.00 4.06
776 780 2.498885 TGGACAGAGATCAGGTGACATG 59.501 50.000 0.00 0.00 0.00 3.21
777 781 2.765135 CTGGACAGAGATCAGGTGACAT 59.235 50.000 0.00 0.00 0.00 3.06
778 782 2.174360 CTGGACAGAGATCAGGTGACA 58.826 52.381 0.00 0.00 0.00 3.58
779 783 1.134848 GCTGGACAGAGATCAGGTGAC 60.135 57.143 3.00 0.00 0.00 3.67
780 784 1.189752 GCTGGACAGAGATCAGGTGA 58.810 55.000 3.00 0.00 0.00 4.02
781 785 0.900421 TGCTGGACAGAGATCAGGTG 59.100 55.000 3.00 0.00 0.00 4.00
782 786 1.485480 CATGCTGGACAGAGATCAGGT 59.515 52.381 3.00 0.00 0.00 4.00
783 787 1.761198 TCATGCTGGACAGAGATCAGG 59.239 52.381 3.00 0.00 0.00 3.86
784 788 2.431419 ACTCATGCTGGACAGAGATCAG 59.569 50.000 3.00 0.00 31.70 2.90
785 789 2.464782 ACTCATGCTGGACAGAGATCA 58.535 47.619 3.00 0.00 31.70 2.92
786 790 3.888323 TCTACTCATGCTGGACAGAGATC 59.112 47.826 3.00 0.00 31.70 2.75
787 791 3.636300 GTCTACTCATGCTGGACAGAGAT 59.364 47.826 3.00 0.00 31.70 2.75
788 792 3.020274 GTCTACTCATGCTGGACAGAGA 58.980 50.000 3.00 0.00 31.70 3.10
789 793 2.757314 TGTCTACTCATGCTGGACAGAG 59.243 50.000 3.00 0.00 33.74 3.35
790 794 2.807676 TGTCTACTCATGCTGGACAGA 58.192 47.619 3.00 0.00 33.74 3.41
791 795 3.599730 TTGTCTACTCATGCTGGACAG 57.400 47.619 8.66 0.00 38.02 3.51
792 796 3.557054 GGTTTGTCTACTCATGCTGGACA 60.557 47.826 5.61 5.61 35.51 4.02
793 797 3.003480 GGTTTGTCTACTCATGCTGGAC 58.997 50.000 0.00 0.00 0.00 4.02
794 798 2.906389 AGGTTTGTCTACTCATGCTGGA 59.094 45.455 0.00 0.00 0.00 3.86
795 799 3.265791 GAGGTTTGTCTACTCATGCTGG 58.734 50.000 0.00 0.00 0.00 4.85
796 800 3.681897 GTGAGGTTTGTCTACTCATGCTG 59.318 47.826 0.00 0.00 42.54 4.41
797 801 3.307059 GGTGAGGTTTGTCTACTCATGCT 60.307 47.826 0.00 0.00 42.54 3.79
798 802 3.003480 GGTGAGGTTTGTCTACTCATGC 58.997 50.000 0.00 0.00 42.54 4.06
799 803 3.254060 CGGTGAGGTTTGTCTACTCATG 58.746 50.000 0.00 0.00 42.54 3.07
800 804 2.353803 GCGGTGAGGTTTGTCTACTCAT 60.354 50.000 0.00 0.00 42.54 2.90
801 805 1.000506 GCGGTGAGGTTTGTCTACTCA 59.999 52.381 0.00 0.00 38.80 3.41
802 806 1.272769 AGCGGTGAGGTTTGTCTACTC 59.727 52.381 0.00 0.00 0.00 2.59
803 807 1.000955 CAGCGGTGAGGTTTGTCTACT 59.999 52.381 9.50 0.00 0.00 2.57
804 808 1.429463 CAGCGGTGAGGTTTGTCTAC 58.571 55.000 9.50 0.00 0.00 2.59
805 809 0.320421 GCAGCGGTGAGGTTTGTCTA 60.320 55.000 20.69 0.00 0.00 2.59
806 810 1.598130 GCAGCGGTGAGGTTTGTCT 60.598 57.895 20.69 0.00 0.00 3.41
807 811 1.845809 CTGCAGCGGTGAGGTTTGTC 61.846 60.000 20.69 0.00 0.00 3.18
808 812 1.893808 CTGCAGCGGTGAGGTTTGT 60.894 57.895 20.69 0.00 0.00 2.83
809 813 1.572085 CTCTGCAGCGGTGAGGTTTG 61.572 60.000 20.69 0.92 0.00 2.93
810 814 1.302033 CTCTGCAGCGGTGAGGTTT 60.302 57.895 20.69 0.00 0.00 3.27
874 881 0.944386 ACACGTCACTGCATGGAAAC 59.056 50.000 0.00 0.00 0.00 2.78
1160 1479 4.932200 GCAGTTGAAGCTACTAATCTGTGT 59.068 41.667 0.00 0.00 0.00 3.72
1184 1503 8.068893 TCTGTTCACTAATGTAAGACGTTTTC 57.931 34.615 0.00 0.00 0.00 2.29
1214 1533 9.732130 AAGATGAAGAACTTTTTACTCTGCTAT 57.268 29.630 0.00 0.00 0.00 2.97
1251 1582 2.333926 CAAGCCATGCATGTGAACAAG 58.666 47.619 24.58 9.02 0.00 3.16
1701 2119 1.090052 CGGAACTTGAAGGCGATCCC 61.090 60.000 0.00 0.00 0.00 3.85
1848 2276 5.989777 TCCAGACTACTTAACTTTGAACAGC 59.010 40.000 0.00 0.00 0.00 4.40
1849 2277 7.494625 TGTTCCAGACTACTTAACTTTGAACAG 59.505 37.037 0.00 0.00 34.98 3.16
1865 2299 5.745312 TTATCATCACAGTGTTCCAGACT 57.255 39.130 0.00 0.00 0.00 3.24
1871 2305 7.254117 CGTCAACCTATTATCATCACAGTGTTC 60.254 40.741 0.00 0.00 0.00 3.18
1886 2322 2.165167 TCGTGTCCTCGTCAACCTATT 58.835 47.619 0.00 0.00 0.00 1.73
1896 2332 1.213013 CTCCACCTTCGTGTCCTCG 59.787 63.158 0.00 0.00 38.41 4.63
1972 2409 1.924320 GCAGCAGAAGCAGAAGCAGG 61.924 60.000 0.00 0.00 45.49 4.85
1975 2412 2.238071 GACGCAGCAGAAGCAGAAGC 62.238 60.000 0.00 0.00 45.49 3.86
2029 2475 3.988385 CGTCGATTCCATGGCGCG 61.988 66.667 6.96 10.52 0.00 6.86
2034 2480 2.095692 TGCATGTTTCGTCGATTCCATG 59.904 45.455 17.93 17.93 34.32 3.66
2064 2510 4.833380 CCGAATTCTGGGGAGAATACTAGA 59.167 45.833 3.52 0.00 37.52 2.43
2073 2519 2.301346 CCAAATCCGAATTCTGGGGAG 58.699 52.381 13.87 0.00 32.43 4.30
2076 2522 1.767759 AGCCAAATCCGAATTCTGGG 58.232 50.000 11.46 3.38 0.00 4.45
2170 2622 8.268878 AGAAGTGGGATATCAGTAATAAAGCT 57.731 34.615 4.83 0.00 0.00 3.74
2171 2623 9.646427 CTAGAAGTGGGATATCAGTAATAAAGC 57.354 37.037 4.83 0.00 0.00 3.51
2236 2688 4.404098 ACCAATCGGACGGTGGGC 62.404 66.667 16.07 0.00 36.69 5.36
2241 2693 1.019278 CAGTTGGACCAATCGGACGG 61.019 60.000 10.83 0.00 35.59 4.79
2242 2694 0.320421 ACAGTTGGACCAATCGGACG 60.320 55.000 10.83 0.00 35.59 4.79
2243 2695 2.618053 CTACAGTTGGACCAATCGGAC 58.382 52.381 10.83 0.00 35.59 4.79
2259 2712 3.450904 AGGTAGGGATCAAACAGCTACA 58.549 45.455 0.00 0.00 0.00 2.74
2281 2734 2.780010 ACCATTGAGGAGGGATAAGGTG 59.220 50.000 0.00 0.00 41.22 4.00
2374 2828 0.391263 GGGAAGCCAACACTCCTACG 60.391 60.000 0.00 0.00 0.00 3.51
2375 2829 0.391263 CGGGAAGCCAACACTCCTAC 60.391 60.000 0.00 0.00 0.00 3.18
2380 2834 2.640581 AAAGCCGGGAAGCCAACACT 62.641 55.000 2.18 0.00 0.00 3.55
2381 2835 2.200337 AAAGCCGGGAAGCCAACAC 61.200 57.895 2.18 0.00 0.00 3.32
2382 2836 2.197324 AAAGCCGGGAAGCCAACA 59.803 55.556 2.18 0.00 0.00 3.33
2383 2837 1.866853 CTCAAAGCCGGGAAGCCAAC 61.867 60.000 2.18 0.00 0.00 3.77
2384 2838 1.603455 CTCAAAGCCGGGAAGCCAA 60.603 57.895 2.18 0.00 0.00 4.52
2385 2839 2.034066 CTCAAAGCCGGGAAGCCA 59.966 61.111 2.18 0.00 0.00 4.75
2386 2840 3.443925 GCTCAAAGCCGGGAAGCC 61.444 66.667 2.18 0.00 34.48 4.35
2387 2841 3.804193 CGCTCAAAGCCGGGAAGC 61.804 66.667 2.18 0.00 38.18 3.86
2388 2842 2.047274 TCGCTCAAAGCCGGGAAG 60.047 61.111 2.18 0.00 38.18 3.46
2389 2843 2.358247 GTCGCTCAAAGCCGGGAA 60.358 61.111 2.18 0.00 38.18 3.97
2390 2844 4.388499 GGTCGCTCAAAGCCGGGA 62.388 66.667 2.18 0.00 38.18 5.14
2391 2845 4.394712 AGGTCGCTCAAAGCCGGG 62.395 66.667 2.18 0.00 38.18 5.73
2392 2846 2.815647 GAGGTCGCTCAAAGCCGG 60.816 66.667 0.00 0.00 38.18 6.13
2393 2847 2.048222 TGAGGTCGCTCAAAGCCG 60.048 61.111 0.00 0.00 38.18 5.52
2394 2848 1.294659 CTGTGAGGTCGCTCAAAGCC 61.295 60.000 0.00 0.00 38.18 4.35
2395 2849 2.157421 CTGTGAGGTCGCTCAAAGC 58.843 57.895 0.00 0.00 32.62 3.51
2396 2850 1.294659 GGCTGTGAGGTCGCTCAAAG 61.295 60.000 6.00 6.00 40.69 2.77
2397 2851 1.301716 GGCTGTGAGGTCGCTCAAA 60.302 57.895 0.00 0.00 34.88 2.69
2398 2852 2.343758 GGCTGTGAGGTCGCTCAA 59.656 61.111 0.00 0.00 34.88 3.02
2399 2853 2.917227 TGGCTGTGAGGTCGCTCA 60.917 61.111 0.00 0.00 0.00 4.26
2400 2854 2.125753 CTGGCTGTGAGGTCGCTC 60.126 66.667 0.00 0.00 0.00 5.03
2401 2855 3.699894 CCTGGCTGTGAGGTCGCT 61.700 66.667 0.00 0.00 0.00 4.93
2403 2857 3.245668 AAGCCTGGCTGTGAGGTCG 62.246 63.158 24.16 0.00 39.62 4.79
2404 2858 1.376553 GAAGCCTGGCTGTGAGGTC 60.377 63.158 24.16 11.15 39.62 3.85
2405 2859 1.495579 ATGAAGCCTGGCTGTGAGGT 61.496 55.000 24.16 4.70 39.62 3.85
2406 2860 0.747283 GATGAAGCCTGGCTGTGAGG 60.747 60.000 24.16 0.00 39.62 3.86
2407 2861 0.747283 GGATGAAGCCTGGCTGTGAG 60.747 60.000 24.16 0.00 39.62 3.51
2408 2862 1.300963 GGATGAAGCCTGGCTGTGA 59.699 57.895 24.16 9.55 39.62 3.58
2409 2863 0.609957 TTGGATGAAGCCTGGCTGTG 60.610 55.000 24.16 0.00 39.62 3.66
2410 2864 0.323178 CTTGGATGAAGCCTGGCTGT 60.323 55.000 24.16 12.47 39.62 4.40
2411 2865 0.323178 ACTTGGATGAAGCCTGGCTG 60.323 55.000 24.16 9.46 39.62 4.85
2412 2866 0.323178 CACTTGGATGAAGCCTGGCT 60.323 55.000 17.22 17.22 42.56 4.75
2413 2867 0.610232 ACACTTGGATGAAGCCTGGC 60.610 55.000 11.65 11.65 34.68 4.85
2414 2868 1.542915 CAACACTTGGATGAAGCCTGG 59.457 52.381 0.00 0.00 34.68 4.45
2426 2880 2.919494 GCCGGGAAGCCAACACTTG 61.919 63.158 2.18 0.00 0.00 3.16
2427 2881 2.597510 GCCGGGAAGCCAACACTT 60.598 61.111 2.18 0.00 0.00 3.16
2433 2887 2.034066 CTCAAAGCCGGGAAGCCA 59.966 61.111 2.18 0.00 0.00 4.75
2449 2903 3.699894 CCTGGCTGTGAGGTCGCT 61.700 66.667 0.00 0.00 0.00 4.93
2497 2952 3.024547 CCCTCACAGAGACCTTTCGATA 58.975 50.000 0.00 0.00 0.00 2.92
2557 3012 7.324375 CGTCAAGCCGTTATCGATAGTTTATAA 59.676 37.037 5.09 0.00 39.71 0.98
2560 3016 4.971830 CGTCAAGCCGTTATCGATAGTTTA 59.028 41.667 5.09 0.00 39.71 2.01
2622 3080 2.171237 TCCATGATCCCAACAGCTACAG 59.829 50.000 0.00 0.00 0.00 2.74
2631 3089 4.290985 TCCACTACTTTTCCATGATCCCAA 59.709 41.667 0.00 0.00 0.00 4.12
2649 3107 4.649218 AGTTTGTTATGTTTTGCCTCCACT 59.351 37.500 0.00 0.00 0.00 4.00
2726 3189 4.522789 AGGTAAAACCAACGCAATTCAGAT 59.477 37.500 0.00 0.00 41.95 2.90
2733 3196 0.386113 GCCAGGTAAAACCAACGCAA 59.614 50.000 0.00 0.00 41.95 4.85
2775 3239 3.885297 CCGGATAATGCCTTCAACAAGAT 59.115 43.478 0.00 0.00 0.00 2.40
2776 3240 3.054728 TCCGGATAATGCCTTCAACAAGA 60.055 43.478 0.00 0.00 0.00 3.02
2794 3259 1.290324 CCAGTCCGAGCATATCCGG 59.710 63.158 0.00 0.00 46.57 5.14
2812 3277 5.767816 TCTAGGCTTTCACCTTGAAAAAC 57.232 39.130 0.00 0.00 44.69 2.43
2881 3349 2.359169 CGCCTTCAGGGAGGTAGCA 61.359 63.158 0.00 0.00 39.11 3.49
2900 3368 3.141398 TGGTGAGATTCTTCAACAGCAC 58.859 45.455 0.00 0.00 39.75 4.40
2930 3399 4.139786 CCTTACCAATCATCCCATGACAG 58.860 47.826 0.00 0.00 43.01 3.51
2938 3408 6.126863 TGACCATATCCTTACCAATCATCC 57.873 41.667 0.00 0.00 0.00 3.51
2949 3419 9.920946 ACAAACTACAATAATGACCATATCCTT 57.079 29.630 0.00 0.00 0.00 3.36
2950 3420 9.561069 GACAAACTACAATAATGACCATATCCT 57.439 33.333 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.