Multiple sequence alignment - TraesCS1A01G430600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G430600 chr1A 100.000 3579 0 0 1 3579 583262989 583259411 0.000000e+00 6610
1 TraesCS1A01G430600 chr1A 85.617 737 98 6 1918 2649 583170149 583170882 0.000000e+00 767
2 TraesCS1A01G430600 chr1A 84.194 639 59 21 1 629 229697096 229696490 1.850000e-162 582
3 TraesCS1A01G430600 chr1A 85.235 447 55 9 1493 1932 583155587 583156029 1.960000e-122 449
4 TraesCS1A01G430600 chr1D 96.609 1327 39 5 1323 2649 485654556 485653236 0.000000e+00 2196
5 TraesCS1A01G430600 chr1D 80.767 1825 265 60 891 2684 485580125 485581894 0.000000e+00 1347
6 TraesCS1A01G430600 chr1D 95.512 713 30 2 2703 3413 485653222 485652510 0.000000e+00 1138
7 TraesCS1A01G430600 chr1D 92.126 635 23 8 719 1330 485671644 485671014 0.000000e+00 870
8 TraesCS1A01G430600 chr1D 89.557 632 50 4 1 629 198639123 198639741 0.000000e+00 787
9 TraesCS1A01G430600 chr1D 86.572 633 46 20 1 629 117304251 117304848 0.000000e+00 662
10 TraesCS1A01G430600 chr1D 97.727 132 3 0 3448 3579 485652504 485652373 1.000000e-55 228
11 TraesCS1A01G430600 chr7D 89.984 629 52 5 1 629 517068079 517067462 0.000000e+00 802
12 TraesCS1A01G430600 chr7D 89.189 629 57 5 1 629 276829052 276829669 0.000000e+00 774
13 TraesCS1A01G430600 chr7D 88.486 634 49 12 1 628 439326611 439325996 0.000000e+00 745
14 TraesCS1A01G430600 chr4D 89.699 631 51 7 1 629 234653343 234652725 0.000000e+00 793
15 TraesCS1A01G430600 chr4D 87.874 635 54 12 1 629 28925755 28926372 0.000000e+00 725
16 TraesCS1A01G430600 chr4D 87.294 606 63 10 30 629 111212560 111211963 0.000000e+00 680
17 TraesCS1A01G430600 chr4D 82.126 649 73 27 1 628 21187106 21186480 1.910000e-142 516
18 TraesCS1A01G430600 chr6D 89.650 628 54 5 1 628 404620546 404619930 0.000000e+00 789
19 TraesCS1A01G430600 chr5D 89.331 628 56 6 1 628 62546980 62546364 0.000000e+00 778
20 TraesCS1A01G430600 chr5D 89.316 599 47 9 34 629 104218779 104219363 0.000000e+00 736
21 TraesCS1A01G430600 chr4B 89.314 627 57 4 3 629 66591283 66590667 0.000000e+00 778
22 TraesCS1A01G430600 chr2A 87.994 633 57 9 1 629 128955307 128955924 0.000000e+00 730
23 TraesCS1A01G430600 chr4A 86.825 630 61 10 2 627 326234228 326234839 0.000000e+00 684
24 TraesCS1A01G430600 chr6A 81.768 181 21 7 1 171 409716852 409717030 1.340000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G430600 chr1A 583259411 583262989 3578 True 6610.000000 6610 100.000 1 3579 1 chr1A.!!$R2 3578
1 TraesCS1A01G430600 chr1A 583170149 583170882 733 False 767.000000 767 85.617 1918 2649 1 chr1A.!!$F2 731
2 TraesCS1A01G430600 chr1A 229696490 229697096 606 True 582.000000 582 84.194 1 629 1 chr1A.!!$R1 628
3 TraesCS1A01G430600 chr1D 485580125 485581894 1769 False 1347.000000 1347 80.767 891 2684 1 chr1D.!!$F3 1793
4 TraesCS1A01G430600 chr1D 485652373 485654556 2183 True 1187.333333 2196 96.616 1323 3579 3 chr1D.!!$R2 2256
5 TraesCS1A01G430600 chr1D 485671014 485671644 630 True 870.000000 870 92.126 719 1330 1 chr1D.!!$R1 611
6 TraesCS1A01G430600 chr1D 198639123 198639741 618 False 787.000000 787 89.557 1 629 1 chr1D.!!$F2 628
7 TraesCS1A01G430600 chr1D 117304251 117304848 597 False 662.000000 662 86.572 1 629 1 chr1D.!!$F1 628
8 TraesCS1A01G430600 chr7D 517067462 517068079 617 True 802.000000 802 89.984 1 629 1 chr7D.!!$R2 628
9 TraesCS1A01G430600 chr7D 276829052 276829669 617 False 774.000000 774 89.189 1 629 1 chr7D.!!$F1 628
10 TraesCS1A01G430600 chr7D 439325996 439326611 615 True 745.000000 745 88.486 1 628 1 chr7D.!!$R1 627
11 TraesCS1A01G430600 chr4D 234652725 234653343 618 True 793.000000 793 89.699 1 629 1 chr4D.!!$R3 628
12 TraesCS1A01G430600 chr4D 28925755 28926372 617 False 725.000000 725 87.874 1 629 1 chr4D.!!$F1 628
13 TraesCS1A01G430600 chr4D 111211963 111212560 597 True 680.000000 680 87.294 30 629 1 chr4D.!!$R2 599
14 TraesCS1A01G430600 chr4D 21186480 21187106 626 True 516.000000 516 82.126 1 628 1 chr4D.!!$R1 627
15 TraesCS1A01G430600 chr6D 404619930 404620546 616 True 789.000000 789 89.650 1 628 1 chr6D.!!$R1 627
16 TraesCS1A01G430600 chr5D 62546364 62546980 616 True 778.000000 778 89.331 1 628 1 chr5D.!!$R1 627
17 TraesCS1A01G430600 chr5D 104218779 104219363 584 False 736.000000 736 89.316 34 629 1 chr5D.!!$F1 595
18 TraesCS1A01G430600 chr4B 66590667 66591283 616 True 778.000000 778 89.314 3 629 1 chr4B.!!$R1 626
19 TraesCS1A01G430600 chr2A 128955307 128955924 617 False 730.000000 730 87.994 1 629 1 chr2A.!!$F1 628
20 TraesCS1A01G430600 chr4A 326234228 326234839 611 False 684.000000 684 86.825 2 627 1 chr4A.!!$F1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 734 0.035152 TGCATCTCCAATTCGGTGCT 60.035 50.0 5.93 0.0 35.57 4.40 F
1576 1702 0.459489 GGCCAAGTGAGCACAACAAA 59.541 50.0 0.00 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2149 1.271163 CGGTTTTAGTCTTGCTCCCCA 60.271 52.381 0.0 0.0 0.0 4.96 R
2701 2836 0.107897 TGCATAACTACCACCCGCTG 60.108 55.000 0.0 0.0 0.0 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 117 5.642063 TGCTTTGTTCCGGTTCTCTATTAAG 59.358 40.000 0.00 0.00 0.00 1.85
103 118 5.064834 GCTTTGTTCCGGTTCTCTATTAAGG 59.935 44.000 0.00 0.00 0.00 2.69
104 119 5.750352 TTGTTCCGGTTCTCTATTAAGGT 57.250 39.130 0.00 0.00 0.00 3.50
105 120 5.750352 TGTTCCGGTTCTCTATTAAGGTT 57.250 39.130 0.00 0.00 0.00 3.50
106 121 5.727434 TGTTCCGGTTCTCTATTAAGGTTC 58.273 41.667 0.00 0.00 0.00 3.62
107 122 5.482878 TGTTCCGGTTCTCTATTAAGGTTCT 59.517 40.000 0.00 0.00 0.00 3.01
108 123 5.848833 TCCGGTTCTCTATTAAGGTTCTC 57.151 43.478 0.00 0.00 0.00 2.87
109 124 5.516984 TCCGGTTCTCTATTAAGGTTCTCT 58.483 41.667 0.00 0.00 0.00 3.10
110 125 6.666678 TCCGGTTCTCTATTAAGGTTCTCTA 58.333 40.000 0.00 0.00 0.00 2.43
111 126 7.296098 TCCGGTTCTCTATTAAGGTTCTCTAT 58.704 38.462 0.00 0.00 0.00 1.98
112 127 7.783596 TCCGGTTCTCTATTAAGGTTCTCTATT 59.216 37.037 0.00 0.00 0.00 1.73
113 128 9.075678 CCGGTTCTCTATTAAGGTTCTCTATTA 57.924 37.037 0.00 0.00 0.00 0.98
260 276 7.414222 ACATTACATTGATGAATTGGAGCTT 57.586 32.000 0.00 0.00 0.00 3.74
430 471 8.615878 AAACTGCTATTGTTACTATTGACACA 57.384 30.769 0.00 0.00 0.00 3.72
435 476 9.884636 TGCTATTGTTACTATTGACACAGTTAT 57.115 29.630 0.00 0.00 0.00 1.89
453 529 9.823098 CACAGTTATCGTTACTATCATACTACC 57.177 37.037 0.00 0.00 0.00 3.18
541 617 9.542462 AACTGCTAATACTTGCGAATATTCTTA 57.458 29.630 13.45 3.07 0.00 2.10
576 652 7.087639 TGTGTCGAATCAATAAATTTGGGTTC 58.912 34.615 0.00 2.09 0.00 3.62
598 674 6.600882 TCAATACTCTACCCTCGAAAACTT 57.399 37.500 0.00 0.00 0.00 2.66
629 705 7.460214 TTCCCTATACTTGTGGGTTATCAAT 57.540 36.000 0.00 0.00 41.58 2.57
630 706 6.837312 TCCCTATACTTGTGGGTTATCAATG 58.163 40.000 0.00 0.00 41.58 2.82
631 707 6.388689 TCCCTATACTTGTGGGTTATCAATGT 59.611 38.462 0.00 0.00 41.58 2.71
632 708 6.486657 CCCTATACTTGTGGGTTATCAATGTG 59.513 42.308 0.00 0.00 36.32 3.21
633 709 7.054124 CCTATACTTGTGGGTTATCAATGTGT 58.946 38.462 0.00 0.00 0.00 3.72
634 710 7.226720 CCTATACTTGTGGGTTATCAATGTGTC 59.773 40.741 0.00 0.00 0.00 3.67
635 711 4.985538 ACTTGTGGGTTATCAATGTGTCT 58.014 39.130 0.00 0.00 0.00 3.41
636 712 5.385198 ACTTGTGGGTTATCAATGTGTCTT 58.615 37.500 0.00 0.00 0.00 3.01
637 713 5.241506 ACTTGTGGGTTATCAATGTGTCTTG 59.758 40.000 0.00 0.00 0.00 3.02
638 714 4.724399 TGTGGGTTATCAATGTGTCTTGT 58.276 39.130 0.00 0.00 0.00 3.16
639 715 5.136828 TGTGGGTTATCAATGTGTCTTGTT 58.863 37.500 0.00 0.00 0.00 2.83
640 716 5.009510 TGTGGGTTATCAATGTGTCTTGTTG 59.990 40.000 0.00 0.00 0.00 3.33
641 717 4.022416 TGGGTTATCAATGTGTCTTGTTGC 60.022 41.667 0.00 0.00 0.00 4.17
642 718 4.022416 GGGTTATCAATGTGTCTTGTTGCA 60.022 41.667 0.00 0.00 0.00 4.08
643 719 5.336690 GGGTTATCAATGTGTCTTGTTGCAT 60.337 40.000 0.00 0.00 0.00 3.96
644 720 5.801947 GGTTATCAATGTGTCTTGTTGCATC 59.198 40.000 0.00 0.00 0.00 3.91
645 721 6.349611 GGTTATCAATGTGTCTTGTTGCATCT 60.350 38.462 0.00 0.00 0.00 2.90
646 722 4.754372 TCAATGTGTCTTGTTGCATCTC 57.246 40.909 0.00 0.00 0.00 2.75
647 723 3.503363 TCAATGTGTCTTGTTGCATCTCC 59.497 43.478 0.00 0.00 0.00 3.71
648 724 2.636647 TGTGTCTTGTTGCATCTCCA 57.363 45.000 0.00 0.00 0.00 3.86
649 725 2.929641 TGTGTCTTGTTGCATCTCCAA 58.070 42.857 0.00 0.00 0.00 3.53
650 726 3.489355 TGTGTCTTGTTGCATCTCCAAT 58.511 40.909 0.00 0.00 0.00 3.16
651 727 3.890756 TGTGTCTTGTTGCATCTCCAATT 59.109 39.130 0.00 0.00 0.00 2.32
652 728 4.022935 TGTGTCTTGTTGCATCTCCAATTC 60.023 41.667 0.00 0.00 0.00 2.17
653 729 3.189080 TGTCTTGTTGCATCTCCAATTCG 59.811 43.478 0.00 0.00 0.00 3.34
654 730 2.749076 TCTTGTTGCATCTCCAATTCGG 59.251 45.455 0.00 0.00 0.00 4.30
655 731 2.198827 TGTTGCATCTCCAATTCGGT 57.801 45.000 0.00 0.00 35.57 4.69
656 732 1.811965 TGTTGCATCTCCAATTCGGTG 59.188 47.619 0.00 0.00 35.57 4.94
657 733 0.810648 TTGCATCTCCAATTCGGTGC 59.189 50.000 0.00 0.00 35.57 5.01
658 734 0.035152 TGCATCTCCAATTCGGTGCT 60.035 50.000 5.93 0.00 35.57 4.40
659 735 1.209261 TGCATCTCCAATTCGGTGCTA 59.791 47.619 5.93 0.00 35.57 3.49
660 736 1.599542 GCATCTCCAATTCGGTGCTAC 59.400 52.381 0.00 0.00 35.57 3.58
661 737 2.905075 CATCTCCAATTCGGTGCTACA 58.095 47.619 0.00 0.00 35.57 2.74
662 738 3.270027 CATCTCCAATTCGGTGCTACAA 58.730 45.455 0.00 0.00 35.57 2.41
663 739 2.695359 TCTCCAATTCGGTGCTACAAC 58.305 47.619 0.00 0.00 35.57 3.32
664 740 2.037902 TCTCCAATTCGGTGCTACAACA 59.962 45.455 0.00 0.00 35.57 3.33
665 741 3.009723 CTCCAATTCGGTGCTACAACAT 58.990 45.455 0.00 0.00 35.57 2.71
666 742 3.006940 TCCAATTCGGTGCTACAACATC 58.993 45.455 0.00 0.00 35.57 3.06
667 743 2.746904 CCAATTCGGTGCTACAACATCA 59.253 45.455 0.00 0.00 0.00 3.07
668 744 3.426159 CCAATTCGGTGCTACAACATCAC 60.426 47.826 0.00 0.00 0.00 3.06
669 745 2.535012 TTCGGTGCTACAACATCACA 57.465 45.000 0.00 0.00 32.69 3.58
670 746 2.535012 TCGGTGCTACAACATCACAA 57.465 45.000 0.00 0.00 32.69 3.33
671 747 2.839975 TCGGTGCTACAACATCACAAA 58.160 42.857 0.00 0.00 32.69 2.83
672 748 2.546368 TCGGTGCTACAACATCACAAAC 59.454 45.455 0.00 0.00 32.69 2.93
673 749 2.289274 CGGTGCTACAACATCACAAACA 59.711 45.455 0.00 0.00 32.69 2.83
674 750 3.242903 CGGTGCTACAACATCACAAACAA 60.243 43.478 0.00 0.00 32.69 2.83
675 751 4.290155 GGTGCTACAACATCACAAACAAG 58.710 43.478 0.00 0.00 32.69 3.16
676 752 4.290155 GTGCTACAACATCACAAACAAGG 58.710 43.478 0.00 0.00 0.00 3.61
677 753 4.036262 GTGCTACAACATCACAAACAAGGA 59.964 41.667 0.00 0.00 0.00 3.36
678 754 4.275689 TGCTACAACATCACAAACAAGGAG 59.724 41.667 0.00 0.00 0.00 3.69
679 755 4.320494 GCTACAACATCACAAACAAGGAGG 60.320 45.833 0.00 0.00 0.00 4.30
680 756 3.897239 ACAACATCACAAACAAGGAGGA 58.103 40.909 0.00 0.00 0.00 3.71
681 757 4.473444 ACAACATCACAAACAAGGAGGAT 58.527 39.130 0.00 0.00 0.00 3.24
682 758 5.630121 ACAACATCACAAACAAGGAGGATA 58.370 37.500 0.00 0.00 0.00 2.59
683 759 6.068010 ACAACATCACAAACAAGGAGGATAA 58.932 36.000 0.00 0.00 0.00 1.75
684 760 6.207417 ACAACATCACAAACAAGGAGGATAAG 59.793 38.462 0.00 0.00 0.00 1.73
685 761 5.256474 ACATCACAAACAAGGAGGATAAGG 58.744 41.667 0.00 0.00 0.00 2.69
686 762 4.993705 TCACAAACAAGGAGGATAAGGT 57.006 40.909 0.00 0.00 0.00 3.50
687 763 4.651778 TCACAAACAAGGAGGATAAGGTG 58.348 43.478 0.00 0.00 0.00 4.00
688 764 3.758554 CACAAACAAGGAGGATAAGGTGG 59.241 47.826 0.00 0.00 0.00 4.61
689 765 3.655777 ACAAACAAGGAGGATAAGGTGGA 59.344 43.478 0.00 0.00 0.00 4.02
690 766 4.010349 CAAACAAGGAGGATAAGGTGGAC 58.990 47.826 0.00 0.00 0.00 4.02
691 767 3.207044 ACAAGGAGGATAAGGTGGACT 57.793 47.619 0.00 0.00 0.00 3.85
692 768 3.108376 ACAAGGAGGATAAGGTGGACTC 58.892 50.000 0.00 0.00 0.00 3.36
693 769 3.246167 ACAAGGAGGATAAGGTGGACTCT 60.246 47.826 0.00 0.00 0.00 3.24
694 770 3.322191 AGGAGGATAAGGTGGACTCTC 57.678 52.381 0.00 0.00 0.00 3.20
695 771 2.587777 AGGAGGATAAGGTGGACTCTCA 59.412 50.000 0.00 0.00 0.00 3.27
696 772 2.696187 GGAGGATAAGGTGGACTCTCAC 59.304 54.545 0.00 0.00 36.95 3.51
697 773 3.628769 GGAGGATAAGGTGGACTCTCACT 60.629 52.174 0.00 0.00 37.75 3.41
698 774 4.027437 GAGGATAAGGTGGACTCTCACTT 58.973 47.826 0.00 0.00 37.75 3.16
699 775 5.202004 GAGGATAAGGTGGACTCTCACTTA 58.798 45.833 0.00 0.00 37.75 2.24
700 776 5.590818 AGGATAAGGTGGACTCTCACTTAA 58.409 41.667 0.00 0.00 37.75 1.85
701 777 6.206042 AGGATAAGGTGGACTCTCACTTAAT 58.794 40.000 0.00 0.00 37.75 1.40
702 778 7.363031 AGGATAAGGTGGACTCTCACTTAATA 58.637 38.462 0.00 0.00 37.75 0.98
703 779 7.844779 AGGATAAGGTGGACTCTCACTTAATAA 59.155 37.037 0.00 0.00 37.75 1.40
704 780 8.483758 GGATAAGGTGGACTCTCACTTAATAAA 58.516 37.037 0.00 0.00 37.75 1.40
706 782 9.838339 ATAAGGTGGACTCTCACTTAATAAATG 57.162 33.333 0.00 0.00 37.75 2.32
707 783 7.259088 AGGTGGACTCTCACTTAATAAATGT 57.741 36.000 0.00 0.00 37.75 2.71
708 784 7.690256 AGGTGGACTCTCACTTAATAAATGTT 58.310 34.615 0.00 0.00 37.75 2.71
709 785 7.824779 AGGTGGACTCTCACTTAATAAATGTTC 59.175 37.037 0.00 0.00 37.75 3.18
710 786 7.606456 GGTGGACTCTCACTTAATAAATGTTCA 59.394 37.037 0.00 0.00 37.75 3.18
711 787 8.443937 GTGGACTCTCACTTAATAAATGTTCAC 58.556 37.037 0.00 0.00 34.98 3.18
712 788 8.154203 TGGACTCTCACTTAATAAATGTTCACA 58.846 33.333 0.00 0.00 0.00 3.58
713 789 9.167311 GGACTCTCACTTAATAAATGTTCACAT 57.833 33.333 0.00 0.00 38.41 3.21
1009 1119 1.144093 TCATCTCATGCATGATGCCCA 59.856 47.619 28.81 11.56 44.23 5.36
1095 1207 4.065789 GAGACCAACTTCTTCGAACCAAT 58.934 43.478 0.00 0.00 0.00 3.16
1234 1354 6.342906 ACATTTCCTCATGTTTTGCATATGG 58.657 36.000 4.56 0.00 33.29 2.74
1241 1361 2.088423 TGTTTTGCATATGGGGTCGAC 58.912 47.619 7.13 7.13 0.00 4.20
1386 1511 4.162320 CCTTATGTGAGTTCCCTAGCTTCA 59.838 45.833 0.00 0.00 0.00 3.02
1436 1561 9.016623 CAATTAACTATGCACATTTCATCACTG 57.983 33.333 0.00 0.00 0.00 3.66
1442 1567 9.433153 ACTATGCACATTTCATCACTGATATAG 57.567 33.333 0.00 0.00 0.00 1.31
1576 1702 0.459489 GGCCAAGTGAGCACAACAAA 59.541 50.000 0.00 0.00 0.00 2.83
1663 1792 8.345565 GCAAGTATGTTATCAGTAATTTCCAGG 58.654 37.037 0.00 0.00 0.00 4.45
1665 1794 9.614792 AAGTATGTTATCAGTAATTTCCAGGTC 57.385 33.333 0.00 0.00 0.00 3.85
1709 1838 8.186163 TCATAACTGATGATCTGTTCAAATTGC 58.814 33.333 18.90 0.00 39.78 3.56
1832 1961 3.190327 CCAAAACACTATGGCGATTCACA 59.810 43.478 0.00 0.00 0.00 3.58
2114 2243 6.870971 TCAGGTAATTAAACTTGTCACACC 57.129 37.500 0.00 0.00 0.00 4.16
2128 2257 4.742417 TGTCACACCTCACACAATTTTTG 58.258 39.130 0.00 0.00 0.00 2.44
2218 2353 7.445096 CAGTTTTCCTTTTTAATTTGGCAGGAT 59.555 33.333 0.00 0.00 30.45 3.24
2401 2536 2.704596 GGGTAGTGGATACTTTCCCTCC 59.295 54.545 10.83 0.00 44.77 4.30
2479 2614 3.942748 GACCGTTTGCCCTCAATACAATA 59.057 43.478 0.00 0.00 31.33 1.90
2529 2664 7.004555 ACTCTGTCACACCTATTACAAATGA 57.995 36.000 0.00 0.00 0.00 2.57
2698 2833 0.907704 TGGATCAGCGGGTGGTAGTT 60.908 55.000 7.42 0.00 0.00 2.24
2699 2834 0.179081 GGATCAGCGGGTGGTAGTTC 60.179 60.000 7.42 0.00 0.00 3.01
2700 2835 0.824759 GATCAGCGGGTGGTAGTTCT 59.175 55.000 7.42 0.00 0.00 3.01
2701 2836 0.824759 ATCAGCGGGTGGTAGTTCTC 59.175 55.000 7.42 0.00 0.00 2.87
2702 2837 0.541063 TCAGCGGGTGGTAGTTCTCA 60.541 55.000 7.42 0.00 0.00 3.27
2703 2838 0.108615 CAGCGGGTGGTAGTTCTCAG 60.109 60.000 0.00 0.00 0.00 3.35
2704 2839 1.448013 GCGGGTGGTAGTTCTCAGC 60.448 63.158 0.00 0.00 0.00 4.26
2705 2840 1.153823 CGGGTGGTAGTTCTCAGCG 60.154 63.158 0.00 0.00 32.75 5.18
2706 2841 1.218316 GGGTGGTAGTTCTCAGCGG 59.782 63.158 0.00 0.00 32.75 5.52
2707 2842 1.218316 GGTGGTAGTTCTCAGCGGG 59.782 63.158 0.00 0.00 0.00 6.13
2708 2843 1.542187 GGTGGTAGTTCTCAGCGGGT 61.542 60.000 0.00 0.00 0.00 5.28
2709 2844 0.389948 GTGGTAGTTCTCAGCGGGTG 60.390 60.000 0.00 0.00 0.00 4.61
2710 2845 1.218316 GGTAGTTCTCAGCGGGTGG 59.782 63.158 7.42 0.00 0.00 4.61
2711 2846 1.542187 GGTAGTTCTCAGCGGGTGGT 61.542 60.000 7.42 0.00 0.00 4.16
2712 2847 1.180029 GTAGTTCTCAGCGGGTGGTA 58.820 55.000 7.42 0.00 0.00 3.25
2713 2848 1.134560 GTAGTTCTCAGCGGGTGGTAG 59.865 57.143 7.42 0.00 0.00 3.18
2714 2849 0.542232 AGTTCTCAGCGGGTGGTAGT 60.542 55.000 7.42 0.00 0.00 2.73
2769 2904 6.978343 TGTTCAACCACGATATTTCCTTAG 57.022 37.500 0.00 0.00 0.00 2.18
2805 2940 9.927668 AATTGCACTTTAATGTAAACAAGCTAT 57.072 25.926 0.00 0.00 0.00 2.97
2835 2970 7.438459 CGCTAAAATAGATAACTGTTGGCTACT 59.562 37.037 2.69 0.00 0.00 2.57
2880 3015 4.417506 CATCCACATACATGCACAACTTG 58.582 43.478 0.00 0.00 0.00 3.16
2890 3025 8.776470 CATACATGCACAACTTGTCATATATCA 58.224 33.333 0.00 0.00 37.74 2.15
2898 3033 8.340443 CACAACTTGTCATATATCATTGTGGAG 58.660 37.037 5.99 0.00 41.11 3.86
2916 3051 5.473162 TGTGGAGATTAGAAATGTTGTGTGG 59.527 40.000 0.00 0.00 0.00 4.17
2921 3056 6.392354 AGATTAGAAATGTTGTGTGGCAATG 58.608 36.000 0.00 0.00 39.55 2.82
2942 3077 7.344134 CAATGTGGATGGGAGATATATGTGAT 58.656 38.462 0.00 0.00 0.00 3.06
2998 3133 7.690952 AAGTAGGCCTCTTATACTATCGAAG 57.309 40.000 9.68 0.00 0.00 3.79
3072 3207 1.133982 CACGACTCTCACCATCAGGAG 59.866 57.143 0.00 0.00 38.69 3.69
3084 3219 6.126409 TCACCATCAGGAGTAAAGTTTTGTT 58.874 36.000 0.00 0.00 38.69 2.83
3085 3220 6.039270 TCACCATCAGGAGTAAAGTTTTGTTG 59.961 38.462 0.00 0.00 38.69 3.33
3089 3224 6.592798 TCAGGAGTAAAGTTTTGTTGTACG 57.407 37.500 0.00 0.00 0.00 3.67
3102 3237 7.382218 AGTTTTGTTGTACGTACACATAGGTAC 59.618 37.037 27.36 20.03 46.17 3.34
3113 3248 5.740290 ACACATAGGTACATAGGCATACC 57.260 43.478 0.00 0.00 41.13 2.73
3158 3293 4.879295 TGTGGGTTTATGAATGATCCCT 57.121 40.909 0.00 0.00 36.23 4.20
3176 3311 7.227873 TGATCCCTAATCTTGTGTGTTAAACA 58.772 34.615 0.00 0.00 35.24 2.83
3184 3319 3.495670 TGTGTGTTAAACAAGTGCACC 57.504 42.857 14.63 0.00 41.57 5.01
3220 3355 9.469807 GTGTTTGTATGGTCAATGATGTTTTTA 57.530 29.630 0.00 0.00 0.00 1.52
3229 3364 7.454380 TGGTCAATGATGTTTTTAAGAGGGATT 59.546 33.333 0.00 0.00 0.00 3.01
3260 3395 3.639094 TGGTGTTGGGATTCATTTTCGTT 59.361 39.130 0.00 0.00 0.00 3.85
3341 3477 0.037303 TCAGAGCAAAGAAGGGCAGG 59.963 55.000 0.00 0.00 0.00 4.85
3425 3562 9.185680 AGTTAAAACTGTTAACTCATGGTTTCT 57.814 29.630 7.22 2.82 40.13 2.52
3426 3563 9.797556 GTTAAAACTGTTAACTCATGGTTTCTT 57.202 29.630 7.22 1.05 39.17 2.52
3428 3565 6.635030 AACTGTTAACTCATGGTTTCTTCC 57.365 37.500 7.22 0.00 39.17 3.46
3429 3566 5.941788 ACTGTTAACTCATGGTTTCTTCCT 58.058 37.500 7.22 0.00 39.17 3.36
3430 3567 7.074653 ACTGTTAACTCATGGTTTCTTCCTA 57.925 36.000 7.22 0.00 39.17 2.94
3431 3568 7.514721 ACTGTTAACTCATGGTTTCTTCCTAA 58.485 34.615 7.22 0.00 39.17 2.69
3432 3569 7.996644 ACTGTTAACTCATGGTTTCTTCCTAAA 59.003 33.333 7.22 0.00 39.17 1.85
3433 3570 8.391075 TGTTAACTCATGGTTTCTTCCTAAAG 57.609 34.615 7.22 0.00 39.17 1.85
3434 3571 7.996644 TGTTAACTCATGGTTTCTTCCTAAAGT 59.003 33.333 7.22 0.00 39.17 2.66
3435 3572 8.847196 GTTAACTCATGGTTTCTTCCTAAAGTT 58.153 33.333 0.00 0.09 39.17 2.66
3436 3573 6.884280 ACTCATGGTTTCTTCCTAAAGTTG 57.116 37.500 0.00 0.00 33.95 3.16
3437 3574 5.241728 ACTCATGGTTTCTTCCTAAAGTTGC 59.758 40.000 0.00 0.00 33.95 4.17
3438 3575 5.136828 TCATGGTTTCTTCCTAAAGTTGCA 58.863 37.500 0.00 0.00 33.95 4.08
3439 3576 5.241506 TCATGGTTTCTTCCTAAAGTTGCAG 59.758 40.000 0.00 0.00 33.95 4.41
3440 3577 4.787551 TGGTTTCTTCCTAAAGTTGCAGA 58.212 39.130 0.00 0.00 33.95 4.26
3441 3578 5.385198 TGGTTTCTTCCTAAAGTTGCAGAT 58.615 37.500 0.00 0.00 33.95 2.90
3442 3579 5.833131 TGGTTTCTTCCTAAAGTTGCAGATT 59.167 36.000 0.00 0.00 33.95 2.40
3443 3580 7.001674 TGGTTTCTTCCTAAAGTTGCAGATTA 58.998 34.615 0.00 0.00 33.95 1.75
3444 3581 7.504238 TGGTTTCTTCCTAAAGTTGCAGATTAA 59.496 33.333 0.00 0.00 33.95 1.40
3445 3582 8.357402 GGTTTCTTCCTAAAGTTGCAGATTAAA 58.643 33.333 0.00 0.00 33.95 1.52
3446 3583 9.181805 GTTTCTTCCTAAAGTTGCAGATTAAAC 57.818 33.333 0.00 0.00 33.95 2.01
3568 3705 9.767684 GTCAACGATTTCATTTCATACATTACA 57.232 29.630 0.00 0.00 0.00 2.41
3569 3706 9.986833 TCAACGATTTCATTTCATACATTACAG 57.013 29.630 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.414222 ACTACAGTAATCACCGGAAAGAATA 57.586 36.000 9.46 0.00 0.00 1.75
144 159 1.524621 CATGACAGCGGGGTCCATC 60.525 63.158 0.00 0.00 36.97 3.51
233 249 7.994911 AGCTCCAATTCATCAATGTAATGTAGA 59.005 33.333 0.00 0.00 0.00 2.59
260 276 0.830444 ACCTAGGGCGACACAGAACA 60.830 55.000 14.81 0.00 0.00 3.18
435 476 7.935755 AGTAGCAAGGTAGTATGATAGTAACGA 59.064 37.037 0.00 0.00 0.00 3.85
453 529 4.635765 TGCAGCAAGGTATTTAGTAGCAAG 59.364 41.667 0.00 0.00 33.19 4.01
541 617 1.201429 ATTCGACACAAGGGGAGCCT 61.201 55.000 0.00 0.00 0.00 4.58
576 652 7.519002 CAAAAGTTTTCGAGGGTAGAGTATTG 58.481 38.462 0.00 0.00 0.00 1.90
598 674 4.196193 CCACAAGTATAGGGAATCGCAAA 58.804 43.478 0.00 0.00 0.00 3.68
629 705 2.636647 TGGAGATGCAACAAGACACA 57.363 45.000 0.00 0.00 0.00 3.72
630 706 4.479619 GAATTGGAGATGCAACAAGACAC 58.520 43.478 0.00 0.00 0.00 3.67
631 707 3.189080 CGAATTGGAGATGCAACAAGACA 59.811 43.478 0.00 0.00 0.00 3.41
632 708 3.426695 CCGAATTGGAGATGCAACAAGAC 60.427 47.826 0.00 0.00 42.00 3.01
633 709 2.749076 CCGAATTGGAGATGCAACAAGA 59.251 45.455 0.00 0.00 42.00 3.02
634 710 2.489329 ACCGAATTGGAGATGCAACAAG 59.511 45.455 0.00 0.00 42.00 3.16
635 711 2.228582 CACCGAATTGGAGATGCAACAA 59.771 45.455 0.00 0.00 42.00 2.83
636 712 1.811965 CACCGAATTGGAGATGCAACA 59.188 47.619 0.00 0.00 42.00 3.33
637 713 1.468054 GCACCGAATTGGAGATGCAAC 60.468 52.381 0.00 0.00 42.00 4.17
638 714 0.810648 GCACCGAATTGGAGATGCAA 59.189 50.000 0.00 0.00 42.00 4.08
639 715 0.035152 AGCACCGAATTGGAGATGCA 60.035 50.000 11.70 0.00 39.19 3.96
640 716 1.599542 GTAGCACCGAATTGGAGATGC 59.400 52.381 0.00 0.00 42.00 3.91
641 717 2.905075 TGTAGCACCGAATTGGAGATG 58.095 47.619 0.00 0.00 42.00 2.90
642 718 3.270877 GTTGTAGCACCGAATTGGAGAT 58.729 45.455 0.00 0.00 42.00 2.75
643 719 2.037902 TGTTGTAGCACCGAATTGGAGA 59.962 45.455 0.00 0.00 42.00 3.71
644 720 2.422597 TGTTGTAGCACCGAATTGGAG 58.577 47.619 0.00 0.00 42.00 3.86
645 721 2.552599 TGTTGTAGCACCGAATTGGA 57.447 45.000 0.00 0.00 42.00 3.53
646 722 2.746904 TGATGTTGTAGCACCGAATTGG 59.253 45.455 0.00 0.00 46.41 3.16
647 723 3.188254 TGTGATGTTGTAGCACCGAATTG 59.812 43.478 0.00 0.00 44.94 2.32
648 724 3.407698 TGTGATGTTGTAGCACCGAATT 58.592 40.909 0.00 0.00 44.94 2.17
649 725 3.052455 TGTGATGTTGTAGCACCGAAT 57.948 42.857 0.00 0.00 44.94 3.34
650 726 2.535012 TGTGATGTTGTAGCACCGAA 57.465 45.000 0.00 0.00 44.94 4.30
651 727 2.535012 TTGTGATGTTGTAGCACCGA 57.465 45.000 0.00 0.00 44.94 4.69
652 728 2.289274 TGTTTGTGATGTTGTAGCACCG 59.711 45.455 0.00 0.00 44.94 4.94
653 729 3.980646 TGTTTGTGATGTTGTAGCACC 57.019 42.857 0.00 0.00 44.94 5.01
654 730 4.036262 TCCTTGTTTGTGATGTTGTAGCAC 59.964 41.667 0.00 0.00 45.73 4.40
655 731 4.203226 TCCTTGTTTGTGATGTTGTAGCA 58.797 39.130 0.00 0.00 0.00 3.49
656 732 4.320494 CCTCCTTGTTTGTGATGTTGTAGC 60.320 45.833 0.00 0.00 0.00 3.58
657 733 5.063204 TCCTCCTTGTTTGTGATGTTGTAG 58.937 41.667 0.00 0.00 0.00 2.74
658 734 5.042463 TCCTCCTTGTTTGTGATGTTGTA 57.958 39.130 0.00 0.00 0.00 2.41
659 735 3.897239 TCCTCCTTGTTTGTGATGTTGT 58.103 40.909 0.00 0.00 0.00 3.32
660 736 6.349611 CCTTATCCTCCTTGTTTGTGATGTTG 60.350 42.308 0.00 0.00 0.00 3.33
661 737 5.711976 CCTTATCCTCCTTGTTTGTGATGTT 59.288 40.000 0.00 0.00 0.00 2.71
662 738 5.222130 ACCTTATCCTCCTTGTTTGTGATGT 60.222 40.000 0.00 0.00 0.00 3.06
663 739 5.124457 CACCTTATCCTCCTTGTTTGTGATG 59.876 44.000 0.00 0.00 0.00 3.07
664 740 5.256474 CACCTTATCCTCCTTGTTTGTGAT 58.744 41.667 0.00 0.00 0.00 3.06
665 741 4.506625 CCACCTTATCCTCCTTGTTTGTGA 60.507 45.833 0.00 0.00 0.00 3.58
666 742 3.758554 CCACCTTATCCTCCTTGTTTGTG 59.241 47.826 0.00 0.00 0.00 3.33
667 743 3.655777 TCCACCTTATCCTCCTTGTTTGT 59.344 43.478 0.00 0.00 0.00 2.83
668 744 4.010349 GTCCACCTTATCCTCCTTGTTTG 58.990 47.826 0.00 0.00 0.00 2.93
669 745 3.916989 AGTCCACCTTATCCTCCTTGTTT 59.083 43.478 0.00 0.00 0.00 2.83
670 746 3.519913 GAGTCCACCTTATCCTCCTTGTT 59.480 47.826 0.00 0.00 0.00 2.83
671 747 3.108376 GAGTCCACCTTATCCTCCTTGT 58.892 50.000 0.00 0.00 0.00 3.16
672 748 3.379452 AGAGTCCACCTTATCCTCCTTG 58.621 50.000 0.00 0.00 0.00 3.61
673 749 3.012959 TGAGAGTCCACCTTATCCTCCTT 59.987 47.826 0.00 0.00 0.00 3.36
674 750 2.587777 TGAGAGTCCACCTTATCCTCCT 59.412 50.000 0.00 0.00 0.00 3.69
675 751 2.696187 GTGAGAGTCCACCTTATCCTCC 59.304 54.545 1.48 0.00 0.00 4.30
676 752 3.637769 AGTGAGAGTCCACCTTATCCTC 58.362 50.000 7.80 0.00 37.76 3.71
677 753 3.767309 AGTGAGAGTCCACCTTATCCT 57.233 47.619 7.80 0.00 37.76 3.24
678 754 5.934402 TTAAGTGAGAGTCCACCTTATCC 57.066 43.478 7.80 0.00 37.76 2.59
680 756 9.838339 CATTTATTAAGTGAGAGTCCACCTTAT 57.162 33.333 7.80 0.00 37.76 1.73
681 757 8.822805 ACATTTATTAAGTGAGAGTCCACCTTA 58.177 33.333 5.99 0.08 37.76 2.69
682 758 7.690256 ACATTTATTAAGTGAGAGTCCACCTT 58.310 34.615 5.99 0.90 37.76 3.50
683 759 7.259088 ACATTTATTAAGTGAGAGTCCACCT 57.741 36.000 5.99 0.00 37.76 4.00
684 760 7.606456 TGAACATTTATTAAGTGAGAGTCCACC 59.394 37.037 5.99 0.00 37.76 4.61
685 761 8.443937 GTGAACATTTATTAAGTGAGAGTCCAC 58.556 37.037 5.99 4.17 37.32 4.02
686 762 8.154203 TGTGAACATTTATTAAGTGAGAGTCCA 58.846 33.333 5.99 0.00 0.00 4.02
687 763 8.547967 TGTGAACATTTATTAAGTGAGAGTCC 57.452 34.615 5.99 0.00 0.00 3.85
701 777 9.845740 AGCATATAGTGGTAATGTGAACATTTA 57.154 29.630 13.53 1.24 43.48 1.40
702 778 8.752005 AGCATATAGTGGTAATGTGAACATTT 57.248 30.769 13.53 0.00 43.48 2.32
771 847 6.129115 GCAAAAATGTGTGCAAGTAGTATGTG 60.129 38.462 0.00 0.00 40.58 3.21
882 958 8.498054 AGATTTGTGACGAAATCTATGAACAT 57.502 30.769 16.07 0.00 46.34 2.71
952 1062 5.240844 GGTATGGTGTAAAAGAGCAGTTTGT 59.759 40.000 0.00 0.00 0.00 2.83
1095 1207 8.134202 TCTATATCAAAGTGTTCACCTCTTCA 57.866 34.615 0.00 0.00 0.00 3.02
1209 1321 7.417683 CCCATATGCAAAACATGAGGAAATGTA 60.418 37.037 0.00 0.00 39.89 2.29
1234 1354 8.358148 TGTAATAGAAATAGATGAAGTCGACCC 58.642 37.037 13.01 5.21 0.00 4.46
1386 1511 8.430801 TGCAAGCTAATGTAAAACAAAACATT 57.569 26.923 6.03 6.03 45.66 2.71
1436 1561 8.299570 CACATGGTTAAGATTTTGGGCTATATC 58.700 37.037 0.00 0.00 0.00 1.63
1442 1567 4.535526 ACACATGGTTAAGATTTTGGGC 57.464 40.909 0.00 0.00 0.00 5.36
1696 1825 5.826601 TGTACAGTTGCAATTTGAACAGA 57.173 34.783 17.56 2.44 0.00 3.41
1832 1961 5.465724 GTCCAAAGTGTGAAGAAACGAGTAT 59.534 40.000 0.00 0.00 0.00 2.12
1956 2085 4.213700 CGATAAGCGTCTCTCGGC 57.786 61.111 0.00 0.00 40.26 5.54
2020 2149 1.271163 CGGTTTTAGTCTTGCTCCCCA 60.271 52.381 0.00 0.00 0.00 4.96
2176 2308 6.954684 AGGAAAACTGAGTCCTAGATGTTCTA 59.045 38.462 0.00 0.00 42.68 2.10
2218 2353 1.702957 CACCAGTCCCCAGTTTTCCTA 59.297 52.381 0.00 0.00 0.00 2.94
2401 2536 2.159517 GGTGATTGAAGCGGCTTTACTG 60.160 50.000 17.51 0.00 0.00 2.74
2479 2614 4.965200 ACTGCTCTTAGTCTCCACTTTT 57.035 40.909 0.00 0.00 33.62 2.27
2529 2664 2.239907 GGCCCTCCATAAGAGAACTTGT 59.760 50.000 0.00 0.00 46.50 3.16
2564 2699 5.539582 TGATAAATCTAAAAAGCACGCGT 57.460 34.783 5.58 5.58 0.00 6.01
2659 2794 9.659135 TGATCCATTATTTAAATGGGATCACTT 57.341 29.630 31.70 15.88 45.55 3.16
2663 2798 7.253422 CGCTGATCCATTATTTAAATGGGATC 58.747 38.462 29.19 29.19 45.55 3.36
2665 2800 5.476599 CCGCTGATCCATTATTTAAATGGGA 59.523 40.000 11.05 13.98 45.55 4.37
2666 2801 5.336690 CCCGCTGATCCATTATTTAAATGGG 60.337 44.000 11.05 9.46 45.55 4.00
2667 2802 5.243730 ACCCGCTGATCCATTATTTAAATGG 59.756 40.000 11.05 9.96 46.59 3.16
2684 2819 0.108615 CTGAGAACTACCACCCGCTG 60.109 60.000 0.00 0.00 0.00 5.18
2698 2833 1.754803 CATAACTACCACCCGCTGAGA 59.245 52.381 0.00 0.00 0.00 3.27
2699 2834 1.806623 GCATAACTACCACCCGCTGAG 60.807 57.143 0.00 0.00 0.00 3.35
2700 2835 0.177141 GCATAACTACCACCCGCTGA 59.823 55.000 0.00 0.00 0.00 4.26
2701 2836 0.107897 TGCATAACTACCACCCGCTG 60.108 55.000 0.00 0.00 0.00 5.18
2702 2837 0.616371 TTGCATAACTACCACCCGCT 59.384 50.000 0.00 0.00 0.00 5.52
2703 2838 1.602377 GATTGCATAACTACCACCCGC 59.398 52.381 0.00 0.00 0.00 6.13
2704 2839 2.872245 CAGATTGCATAACTACCACCCG 59.128 50.000 0.00 0.00 0.00 5.28
2705 2840 2.618709 GCAGATTGCATAACTACCACCC 59.381 50.000 0.00 0.00 44.26 4.61
2706 2841 3.971032 GCAGATTGCATAACTACCACC 57.029 47.619 0.00 0.00 44.26 4.61
2747 2882 5.585047 AGCTAAGGAAATATCGTGGTTGAAC 59.415 40.000 0.00 0.00 0.00 3.18
2805 2940 7.307751 GCCAACAGTTATCTATTTTAGCGCATA 60.308 37.037 11.47 0.00 0.00 3.14
2820 2955 1.831736 AGCCGAGTAGCCAACAGTTAT 59.168 47.619 0.00 0.00 0.00 1.89
2835 2970 3.324108 GGGTGTTGGGGTAGCCGA 61.324 66.667 4.56 0.00 0.00 5.54
2890 3025 7.309377 CCACACAACATTTCTAATCTCCACAAT 60.309 37.037 0.00 0.00 0.00 2.71
2898 3033 6.089820 CACATTGCCACACAACATTTCTAATC 59.910 38.462 0.00 0.00 42.27 1.75
2902 3037 3.493002 CCACATTGCCACACAACATTTCT 60.493 43.478 0.00 0.00 42.27 2.52
2916 3051 5.356190 CACATATATCTCCCATCCACATTGC 59.644 44.000 0.00 0.00 0.00 3.56
2921 3056 5.426509 TCCATCACATATATCTCCCATCCAC 59.573 44.000 0.00 0.00 0.00 4.02
2942 3077 6.037062 CGTCTAAACTATTTGTGCATCATCCA 59.963 38.462 0.00 0.00 0.00 3.41
2998 3133 3.242316 GGTTCTCGTGTCTTGTGTGTTTC 60.242 47.826 0.00 0.00 0.00 2.78
3072 3207 9.571804 CTATGTGTACGTACAACAAAACTTTAC 57.428 33.333 28.89 12.84 38.04 2.01
3084 3219 5.239306 GCCTATGTACCTATGTGTACGTACA 59.761 44.000 24.10 24.10 43.22 2.90
3085 3220 5.239306 TGCCTATGTACCTATGTGTACGTAC 59.761 44.000 18.90 18.90 43.22 3.67
3089 3224 6.436532 AGGTATGCCTATGTACCTATGTGTAC 59.563 42.308 0.00 0.00 46.70 2.90
3102 3237 9.561069 AAAAGTACATTCTAAGGTATGCCTATG 57.439 33.333 1.46 5.78 46.33 2.23
3113 3248 9.950680 ACAAATCACACAAAAGTACATTCTAAG 57.049 29.630 0.00 0.00 0.00 2.18
3176 3311 5.337578 AACACATTAAAACTGGTGCACTT 57.662 34.783 17.98 5.09 34.69 3.16
3184 3319 8.864069 TTGACCATACAAACACATTAAAACTG 57.136 30.769 0.00 0.00 0.00 3.16
3220 3355 5.336102 ACACCATGAAAATGAATCCCTCTT 58.664 37.500 0.00 0.00 0.00 2.85
3229 3364 4.837298 TGAATCCCAACACCATGAAAATGA 59.163 37.500 0.00 0.00 0.00 2.57
3234 3369 5.566429 CGAAAATGAATCCCAACACCATGAA 60.566 40.000 0.00 0.00 0.00 2.57
3280 3416 6.063404 ACCGTTTCATTCACCCTAACTAAAA 58.937 36.000 0.00 0.00 0.00 1.52
3341 3477 2.800736 GTGCATCCGGGTCATTGC 59.199 61.111 0.00 4.46 35.67 3.56
3400 3537 9.797556 AAGAAACCATGAGTTAACAGTTTTAAC 57.202 29.630 8.61 4.09 37.88 2.01
3413 3550 5.241728 GCAACTTTAGGAAGAAACCATGAGT 59.758 40.000 0.00 0.00 36.69 3.41
3414 3551 5.241506 TGCAACTTTAGGAAGAAACCATGAG 59.758 40.000 0.00 0.00 36.69 2.90
3416 3553 5.241506 TCTGCAACTTTAGGAAGAAACCATG 59.758 40.000 0.00 0.00 36.69 3.66
3418 3555 4.787551 TCTGCAACTTTAGGAAGAAACCA 58.212 39.130 0.00 0.00 36.69 3.67
3419 3556 5.966742 ATCTGCAACTTTAGGAAGAAACC 57.033 39.130 0.00 0.00 36.69 3.27
3420 3557 9.181805 GTTTAATCTGCAACTTTAGGAAGAAAC 57.818 33.333 0.00 0.00 36.69 2.78
3421 3558 9.131791 AGTTTAATCTGCAACTTTAGGAAGAAA 57.868 29.630 0.00 0.00 36.69 2.52
3422 3559 8.691661 AGTTTAATCTGCAACTTTAGGAAGAA 57.308 30.769 0.00 0.00 36.69 2.52
3423 3560 8.691661 AAGTTTAATCTGCAACTTTAGGAAGA 57.308 30.769 0.00 0.00 39.69 2.87
3424 3561 9.185192 CAAAGTTTAATCTGCAACTTTAGGAAG 57.815 33.333 10.71 0.00 46.68 3.46
3425 3562 8.691797 ACAAAGTTTAATCTGCAACTTTAGGAA 58.308 29.630 10.71 0.00 46.68 3.36
3426 3563 8.232913 ACAAAGTTTAATCTGCAACTTTAGGA 57.767 30.769 10.71 0.00 46.68 2.94
3443 3580 9.646522 ATCCAGGCTATATCAAATACAAAGTTT 57.353 29.630 0.00 0.00 0.00 2.66
3444 3581 9.071276 CATCCAGGCTATATCAAATACAAAGTT 57.929 33.333 0.00 0.00 0.00 2.66
3445 3582 7.667219 CCATCCAGGCTATATCAAATACAAAGT 59.333 37.037 0.00 0.00 0.00 2.66
3446 3583 8.048534 CCATCCAGGCTATATCAAATACAAAG 57.951 38.462 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.