Multiple sequence alignment - TraesCS1A01G430500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G430500 chr1A 100.000 4533 0 0 1 4533 583113544 583118076 0.000000e+00 8371.0
1 TraesCS1A01G430500 chr1A 90.101 1192 95 16 2536 3712 583130792 583129609 0.000000e+00 1526.0
2 TraesCS1A01G430500 chr1A 86.883 1235 95 36 304 1492 583132659 583131446 0.000000e+00 1321.0
3 TraesCS1A01G430500 chr1A 91.327 196 6 7 3965 4153 487689630 487689439 1.620000e-64 257.0
4 TraesCS1A01G430500 chr1A 88.119 202 16 6 2292 2492 583131080 583130886 2.730000e-57 233.0
5 TraesCS1A01G430500 chr1A 85.380 171 17 4 431 596 583299354 583299187 2.170000e-38 171.0
6 TraesCS1A01G430500 chr1A 84.242 165 23 2 416 580 517408969 517409130 1.690000e-34 158.0
7 TraesCS1A01G430500 chr1B 95.478 1548 55 8 2425 3965 676118986 676120525 0.000000e+00 2457.0
8 TraesCS1A01G430500 chr1B 90.125 1438 67 27 208 1607 676117589 676118989 0.000000e+00 1799.0
9 TraesCS1A01G430500 chr1B 89.488 1427 115 22 2317 3714 676150330 676148910 0.000000e+00 1772.0
10 TraesCS1A01G430500 chr1B 87.186 757 41 21 293 1016 676161767 676161034 0.000000e+00 809.0
11 TraesCS1A01G430500 chr1B 82.368 794 104 15 1014 1782 676151235 676150453 0.000000e+00 658.0
12 TraesCS1A01G430500 chr1B 93.750 256 11 5 3964 4217 138572911 138573163 3.310000e-101 379.0
13 TraesCS1A01G430500 chr1B 73.006 1141 264 39 2413 3520 676469372 676468243 1.200000e-95 361.0
14 TraesCS1A01G430500 chr1B 97.512 201 3 1 1899 2099 562160092 562160290 4.340000e-90 342.0
15 TraesCS1A01G430500 chr1B 93.607 219 14 0 4248 4466 138573149 138573367 1.220000e-85 327.0
16 TraesCS1A01G430500 chr1B 84.556 259 28 10 3966 4217 341520752 341520499 3.500000e-61 246.0
17 TraesCS1A01G430500 chr1B 88.811 143 14 2 431 573 676197629 676197489 1.680000e-39 174.0
18 TraesCS1A01G430500 chr1B 76.948 308 67 4 2675 2981 676391184 676390880 6.030000e-39 172.0
19 TraesCS1A01G430500 chr1B 85.542 166 16 5 417 580 570270485 570270644 2.800000e-37 167.0
20 TraesCS1A01G430500 chr1B 91.964 112 6 3 3854 3965 676148898 676148790 2.180000e-33 154.0
21 TraesCS1A01G430500 chr1B 88.350 103 5 4 4418 4513 138573392 138573494 2.870000e-22 117.0
22 TraesCS1A01G430500 chr5B 80.670 1702 250 44 2300 3936 585006003 585007690 0.000000e+00 1247.0
23 TraesCS1A01G430500 chr5B 94.378 249 12 2 3966 4213 528547232 528547479 9.200000e-102 381.0
24 TraesCS1A01G430500 chr5B 98.469 196 1 1 1902 2097 8541645 8541838 1.210000e-90 344.0
25 TraesCS1A01G430500 chr5B 94.118 204 12 0 4248 4451 528547468 528547671 1.220000e-80 311.0
26 TraesCS1A01G430500 chr5B 79.525 337 50 15 818 1149 585004982 585005304 5.900000e-54 222.0
27 TraesCS1A01G430500 chr5B 86.550 171 19 3 426 595 585004429 585004596 7.740000e-43 185.0
28 TraesCS1A01G430500 chr5B 89.011 91 3 4 4433 4516 528548045 528548135 6.200000e-19 106.0
29 TraesCS1A01G430500 chr5A 81.304 1503 220 36 2300 3752 596566082 596567573 0.000000e+00 1162.0
30 TraesCS1A01G430500 chr5A 98.477 197 1 1 1902 2098 541477918 541477724 3.360000e-91 346.0
31 TraesCS1A01G430500 chr5A 80.822 219 33 5 3754 3965 596567600 596567816 3.630000e-36 163.0
32 TraesCS1A01G430500 chr5D 81.225 1502 215 34 2300 3752 477378881 477380364 0.000000e+00 1149.0
33 TraesCS1A01G430500 chr5D 76.585 1025 153 44 781 1772 477377791 477378761 2.450000e-132 483.0
34 TraesCS1A01G430500 chr5D 80.822 219 33 7 3754 3965 477380391 477380607 3.630000e-36 163.0
35 TraesCS1A01G430500 chr1D 86.535 557 36 18 274 797 485573884 485573334 1.090000e-160 577.0
36 TraesCS1A01G430500 chr1D 72.791 713 151 31 2693 3374 485818845 485818145 7.690000e-48 202.0
37 TraesCS1A01G430500 chr7B 98.980 196 2 0 1901 2096 708843282 708843477 7.220000e-93 351.0
38 TraesCS1A01G430500 chr7B 97.487 199 3 1 1900 2098 718077358 718077162 5.620000e-89 339.0
39 TraesCS1A01G430500 chr7B 100.000 31 0 0 2249 2279 146076148 146076178 1.760000e-04 58.4
40 TraesCS1A01G430500 chr2B 96.172 209 6 1 1896 2104 47313074 47312868 1.560000e-89 340.0
41 TraesCS1A01G430500 chr2B 97.487 199 3 1 1902 2100 38073780 38073976 5.620000e-89 339.0
42 TraesCS1A01G430500 chr2B 92.655 177 6 2 3966 4135 73796267 73796091 9.740000e-62 248.0
43 TraesCS1A01G430500 chr2B 90.761 184 10 2 3966 4142 387087406 387087223 5.860000e-59 239.0
44 TraesCS1A01G430500 chr2B 100.000 31 0 0 2265 2295 494953837 494953807 1.760000e-04 58.4
45 TraesCS1A01G430500 chr3A 96.135 207 6 1 1893 2099 735357744 735357540 2.020000e-88 337.0
46 TraesCS1A01G430500 chr3A 95.714 210 7 1 1900 2109 746586320 746586113 2.020000e-88 337.0
47 TraesCS1A01G430500 chr2A 84.133 271 33 7 3486 3752 93885622 93885358 2.090000e-63 254.0
48 TraesCS1A01G430500 chrUn 88.889 198 13 5 3961 4151 83944869 83945064 7.580000e-58 235.0
49 TraesCS1A01G430500 chr6B 89.247 186 12 4 3966 4143 465140362 465140177 4.560000e-55 226.0
50 TraesCS1A01G430500 chr6B 87.755 196 15 3 3963 4151 715828351 715828544 2.120000e-53 220.0
51 TraesCS1A01G430500 chr6B 93.878 49 3 0 2249 2297 503544616 503544568 1.750000e-09 75.0
52 TraesCS1A01G430500 chr4A 83.333 186 25 4 3401 3584 46639313 46639132 2.800000e-37 167.0
53 TraesCS1A01G430500 chr7D 94.118 51 3 0 2249 2299 119897034 119896984 1.350000e-10 78.7
54 TraesCS1A01G430500 chr7D 100.000 29 0 0 2251 2279 180245449 180245477 2.000000e-03 54.7
55 TraesCS1A01G430500 chr6D 100.000 30 0 0 2262 2291 319691723 319691752 6.340000e-04 56.5
56 TraesCS1A01G430500 chr6A 100.000 30 0 0 2262 2291 457381661 457381632 6.340000e-04 56.5
57 TraesCS1A01G430500 chr3B 100.000 29 0 0 2250 2278 447023041 447023069 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G430500 chr1A 583113544 583118076 4532 False 8371.000000 8371 100.000000 1 4533 1 chr1A.!!$F2 4532
1 TraesCS1A01G430500 chr1A 583129609 583132659 3050 True 1026.666667 1526 88.367667 304 3712 3 chr1A.!!$R3 3408
2 TraesCS1A01G430500 chr1B 676117589 676120525 2936 False 2128.000000 2457 92.801500 208 3965 2 chr1B.!!$F4 3757
3 TraesCS1A01G430500 chr1B 676148790 676151235 2445 True 861.333333 1772 87.940000 1014 3965 3 chr1B.!!$R6 2951
4 TraesCS1A01G430500 chr1B 676161034 676161767 733 True 809.000000 809 87.186000 293 1016 1 chr1B.!!$R2 723
5 TraesCS1A01G430500 chr1B 676468243 676469372 1129 True 361.000000 361 73.006000 2413 3520 1 chr1B.!!$R5 1107
6 TraesCS1A01G430500 chr1B 138572911 138573494 583 False 274.333333 379 91.902333 3964 4513 3 chr1B.!!$F3 549
7 TraesCS1A01G430500 chr5B 585004429 585007690 3261 False 551.333333 1247 82.248333 426 3936 3 chr5B.!!$F3 3510
8 TraesCS1A01G430500 chr5B 528547232 528548135 903 False 266.000000 381 92.502333 3966 4516 3 chr5B.!!$F2 550
9 TraesCS1A01G430500 chr5A 596566082 596567816 1734 False 662.500000 1162 81.063000 2300 3965 2 chr5A.!!$F1 1665
10 TraesCS1A01G430500 chr5D 477377791 477380607 2816 False 598.333333 1149 79.544000 781 3965 3 chr5D.!!$F1 3184
11 TraesCS1A01G430500 chr1D 485573334 485573884 550 True 577.000000 577 86.535000 274 797 1 chr1D.!!$R1 523
12 TraesCS1A01G430500 chr1D 485818145 485818845 700 True 202.000000 202 72.791000 2693 3374 1 chr1D.!!$R2 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 615 0.397187 TATCGTCTCTCTCCTCCCCG 59.603 60.0 0.00 0.00 0.00 5.73 F
1944 2275 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.0 23.99 15.45 42.21 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2057 2388 0.032130 CTAAGCATCTTAGCGGCGGA 59.968 55.0 9.78 0.0 40.15 5.54 R
3731 4204 0.259938 GATGGACTGCCCCCTTCAAT 59.740 55.0 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.789262 CAAAGCCTTGAATAGGTTCTACATG 58.211 40.000 0.00 0.00 46.61 3.21
25 26 5.957771 AGCCTTGAATAGGTTCTACATGA 57.042 39.130 0.00 0.00 46.61 3.07
26 27 6.506538 AGCCTTGAATAGGTTCTACATGAT 57.493 37.500 0.00 0.00 46.61 2.45
27 28 6.529220 AGCCTTGAATAGGTTCTACATGATC 58.471 40.000 0.00 0.00 46.61 2.92
28 29 6.100279 AGCCTTGAATAGGTTCTACATGATCA 59.900 38.462 0.00 0.00 46.61 2.92
29 30 6.767902 GCCTTGAATAGGTTCTACATGATCAA 59.232 38.462 0.00 0.00 46.61 2.57
30 31 7.446625 GCCTTGAATAGGTTCTACATGATCAAT 59.553 37.037 0.00 0.00 46.61 2.57
31 32 9.347240 CCTTGAATAGGTTCTACATGATCAATT 57.653 33.333 0.00 0.00 39.39 2.32
39 40 8.896744 AGGTTCTACATGATCAATTAACACATG 58.103 33.333 0.00 0.00 42.37 3.21
41 42 9.494479 GTTCTACATGATCAATTAACACATGTG 57.506 33.333 24.25 24.25 46.69 3.21
42 43 7.696755 TCTACATGATCAATTAACACATGTGC 58.303 34.615 25.68 6.56 46.69 4.57
43 44 6.270156 ACATGATCAATTAACACATGTGCA 57.730 33.333 25.68 11.16 45.95 4.57
44 45 6.689554 ACATGATCAATTAACACATGTGCAA 58.310 32.000 25.68 19.14 45.95 4.08
45 46 6.587226 ACATGATCAATTAACACATGTGCAAC 59.413 34.615 25.68 8.23 45.95 4.17
62 63 3.839823 CAACAACATTTGCTTTCCACG 57.160 42.857 0.00 0.00 0.00 4.94
63 64 2.507339 ACAACATTTGCTTTCCACGG 57.493 45.000 0.00 0.00 0.00 4.94
64 65 2.028130 ACAACATTTGCTTTCCACGGA 58.972 42.857 0.00 0.00 0.00 4.69
65 66 2.627699 ACAACATTTGCTTTCCACGGAT 59.372 40.909 0.00 0.00 0.00 4.18
66 67 2.988493 CAACATTTGCTTTCCACGGATG 59.012 45.455 0.00 0.00 0.00 3.51
67 68 2.238521 ACATTTGCTTTCCACGGATGT 58.761 42.857 0.00 0.00 0.00 3.06
68 69 3.417101 ACATTTGCTTTCCACGGATGTA 58.583 40.909 0.00 0.00 0.00 2.29
69 70 4.016444 ACATTTGCTTTCCACGGATGTAT 58.984 39.130 0.00 0.00 0.00 2.29
70 71 4.462483 ACATTTGCTTTCCACGGATGTATT 59.538 37.500 0.00 0.00 0.00 1.89
71 72 5.047377 ACATTTGCTTTCCACGGATGTATTT 60.047 36.000 0.00 0.00 0.00 1.40
72 73 5.461032 TTTGCTTTCCACGGATGTATTTT 57.539 34.783 0.00 0.00 0.00 1.82
73 74 5.461032 TTGCTTTCCACGGATGTATTTTT 57.539 34.783 0.00 0.00 0.00 1.94
137 138 7.712264 TTTTAAATCAGCTGTCAATTTGGTG 57.288 32.000 14.67 0.00 0.00 4.17
138 139 6.647334 TTAAATCAGCTGTCAATTTGGTGA 57.353 33.333 14.67 0.00 41.43 4.02
139 140 5.733620 AAATCAGCTGTCAATTTGGTGAT 57.266 34.783 14.67 0.00 46.54 3.06
140 141 5.733620 AATCAGCTGTCAATTTGGTGATT 57.266 34.783 14.67 12.03 46.94 2.57
143 144 6.441093 TCAGCTGTCAATTTGGTGATTATC 57.559 37.500 14.67 0.00 34.00 1.75
144 145 5.357878 TCAGCTGTCAATTTGGTGATTATCC 59.642 40.000 14.67 0.00 34.00 2.59
145 146 5.359009 CAGCTGTCAATTTGGTGATTATCCT 59.641 40.000 5.25 0.00 0.00 3.24
146 147 5.954150 AGCTGTCAATTTGGTGATTATCCTT 59.046 36.000 0.00 0.00 0.00 3.36
147 148 6.096001 AGCTGTCAATTTGGTGATTATCCTTC 59.904 38.462 0.00 0.00 0.00 3.46
148 149 6.096001 GCTGTCAATTTGGTGATTATCCTTCT 59.904 38.462 0.00 0.00 0.00 2.85
149 150 7.283127 GCTGTCAATTTGGTGATTATCCTTCTA 59.717 37.037 0.00 0.00 0.00 2.10
150 151 8.506168 TGTCAATTTGGTGATTATCCTTCTAC 57.494 34.615 0.00 0.00 0.00 2.59
151 152 8.106462 TGTCAATTTGGTGATTATCCTTCTACA 58.894 33.333 0.00 0.00 0.00 2.74
152 153 8.956426 GTCAATTTGGTGATTATCCTTCTACAA 58.044 33.333 0.00 0.00 0.00 2.41
153 154 9.527157 TCAATTTGGTGATTATCCTTCTACAAA 57.473 29.630 0.00 0.00 0.00 2.83
156 157 9.699410 ATTTGGTGATTATCCTTCTACAAATGA 57.301 29.630 0.00 0.00 35.46 2.57
157 158 9.699410 TTTGGTGATTATCCTTCTACAAATGAT 57.301 29.630 0.00 0.00 0.00 2.45
158 159 9.699410 TTGGTGATTATCCTTCTACAAATGATT 57.301 29.630 0.00 0.00 0.00 2.57
159 160 9.342308 TGGTGATTATCCTTCTACAAATGATTC 57.658 33.333 0.00 0.00 0.00 2.52
160 161 8.787852 GGTGATTATCCTTCTACAAATGATTCC 58.212 37.037 0.00 0.00 0.00 3.01
161 162 9.566432 GTGATTATCCTTCTACAAATGATTCCT 57.434 33.333 0.00 0.00 0.00 3.36
162 163 9.784531 TGATTATCCTTCTACAAATGATTCCTC 57.215 33.333 0.00 0.00 0.00 3.71
166 167 8.744568 ATCCTTCTACAAATGATTCCTCTTTC 57.255 34.615 0.00 0.00 0.00 2.62
167 168 7.922382 TCCTTCTACAAATGATTCCTCTTTCT 58.078 34.615 0.00 0.00 0.00 2.52
168 169 8.386264 TCCTTCTACAAATGATTCCTCTTTCTT 58.614 33.333 0.00 0.00 0.00 2.52
169 170 9.018582 CCTTCTACAAATGATTCCTCTTTCTTT 57.981 33.333 0.00 0.00 0.00 2.52
170 171 9.837525 CTTCTACAAATGATTCCTCTTTCTTTG 57.162 33.333 0.00 0.00 0.00 2.77
171 172 9.573166 TTCTACAAATGATTCCTCTTTCTTTGA 57.427 29.630 0.00 0.00 0.00 2.69
172 173 9.224267 TCTACAAATGATTCCTCTTTCTTTGAG 57.776 33.333 0.00 0.00 0.00 3.02
180 181 4.566426 CCTCTTTCTTTGAGGGACATCT 57.434 45.455 2.09 0.00 45.39 2.90
181 182 4.260170 CCTCTTTCTTTGAGGGACATCTG 58.740 47.826 2.09 0.00 45.39 2.90
182 183 4.019860 CCTCTTTCTTTGAGGGACATCTGA 60.020 45.833 2.09 0.00 45.39 3.27
183 184 5.513788 CCTCTTTCTTTGAGGGACATCTGAA 60.514 44.000 2.09 0.00 45.39 3.02
184 185 5.940617 TCTTTCTTTGAGGGACATCTGAAA 58.059 37.500 0.00 0.00 0.00 2.69
185 186 6.364701 TCTTTCTTTGAGGGACATCTGAAAA 58.635 36.000 0.00 0.00 0.00 2.29
186 187 7.006509 TCTTTCTTTGAGGGACATCTGAAAAT 58.993 34.615 0.00 0.00 0.00 1.82
187 188 6.824305 TTCTTTGAGGGACATCTGAAAATC 57.176 37.500 0.00 0.00 0.00 2.17
188 189 5.879763 TCTTTGAGGGACATCTGAAAATCA 58.120 37.500 0.00 0.00 0.00 2.57
189 190 6.487828 TCTTTGAGGGACATCTGAAAATCAT 58.512 36.000 0.00 0.00 0.00 2.45
190 191 6.600822 TCTTTGAGGGACATCTGAAAATCATC 59.399 38.462 0.00 0.00 0.00 2.92
191 192 4.785301 TGAGGGACATCTGAAAATCATCC 58.215 43.478 0.00 0.00 0.00 3.51
192 193 4.476113 TGAGGGACATCTGAAAATCATCCT 59.524 41.667 0.00 0.00 0.00 3.24
193 194 5.046288 AGGGACATCTGAAAATCATCCTC 57.954 43.478 0.00 0.00 0.00 3.71
194 195 3.812053 GGGACATCTGAAAATCATCCTCG 59.188 47.826 0.00 0.00 0.00 4.63
195 196 4.443457 GGGACATCTGAAAATCATCCTCGA 60.443 45.833 0.00 0.00 0.00 4.04
196 197 5.303971 GGACATCTGAAAATCATCCTCGAT 58.696 41.667 0.00 0.00 0.00 3.59
197 198 5.178996 GGACATCTGAAAATCATCCTCGATG 59.821 44.000 0.00 0.00 41.00 3.84
261 262 9.377312 GAAAATTCTAGTCAAGTAGATTCAGCT 57.623 33.333 0.00 0.00 0.00 4.24
263 264 5.255710 TCTAGTCAAGTAGATTCAGCTGC 57.744 43.478 9.47 0.00 0.00 5.25
269 270 3.472283 AGTAGATTCAGCTGCTGGATG 57.528 47.619 27.44 4.07 28.43 3.51
270 271 1.872313 GTAGATTCAGCTGCTGGATGC 59.128 52.381 27.44 17.62 43.25 3.91
296 297 3.140141 CGGCCGACGTAACCCCTA 61.140 66.667 24.07 0.00 37.93 3.53
391 395 3.470888 CACCCCTTCGCCGGAGAT 61.471 66.667 9.30 0.00 0.00 2.75
422 447 2.126031 GCGGACGACAAGGAGGAC 60.126 66.667 0.00 0.00 0.00 3.85
590 615 0.397187 TATCGTCTCTCTCCTCCCCG 59.603 60.000 0.00 0.00 0.00 5.73
593 618 4.507916 TCTCTCTCCTCCCCGCCG 62.508 72.222 0.00 0.00 0.00 6.46
663 758 0.593008 TGTGGTATACGCGCGCTTAG 60.593 55.000 32.58 16.59 0.00 2.18
670 765 0.643310 TACGCGCGCTTAGTTCATTG 59.357 50.000 32.58 11.74 0.00 2.82
771 877 1.752498 TGCATTGCCAATCTCCATGAC 59.248 47.619 6.12 0.00 0.00 3.06
812 921 4.508124 CCTCTCTGCAATGTAATACGTTCC 59.492 45.833 0.00 0.00 0.00 3.62
813 922 5.339008 TCTCTGCAATGTAATACGTTCCT 57.661 39.130 0.00 0.00 0.00 3.36
814 923 5.109210 TCTCTGCAATGTAATACGTTCCTG 58.891 41.667 0.00 0.00 0.00 3.86
815 924 4.827692 TCTGCAATGTAATACGTTCCTGT 58.172 39.130 0.00 0.00 0.00 4.00
875 1148 5.163311 CCTTTTCCAGTTCCAGTTCCATTTT 60.163 40.000 0.00 0.00 0.00 1.82
954 1229 4.996434 CGCATCTCCATCCGGCCC 62.996 72.222 0.00 0.00 0.00 5.80
1026 1301 0.964358 GTCTGCCCAGCAAGCTCATT 60.964 55.000 0.00 0.00 38.41 2.57
1140 1415 2.447887 CGACTTTGCTCGAGCGCAT 61.448 57.895 30.75 17.03 45.83 4.73
1162 1437 3.438017 CTGCTCTCCCTGCGCCTAC 62.438 68.421 4.18 0.00 0.00 3.18
1254 1529 4.082081 CCATTTTCTGTAGCTCCATTTGCA 60.082 41.667 0.00 0.00 0.00 4.08
1351 1632 5.095490 CGATATTTGCTGTTGAAGTTTCCC 58.905 41.667 0.00 0.00 0.00 3.97
1362 1643 2.041081 TGAAGTTTCCCTGGTGGTATGG 59.959 50.000 0.00 0.00 34.77 2.74
1395 1687 4.899457 TCTCAACCAATATCCTATGTCCGT 59.101 41.667 0.00 0.00 0.00 4.69
1537 1844 8.071177 AGAATTTAGCTAATCTTGCCAATGTT 57.929 30.769 7.08 0.00 0.00 2.71
1552 1859 4.448732 GCCAATGTTTTTGTCCTGATTGTC 59.551 41.667 0.00 0.00 0.00 3.18
1657 1972 9.726438 ATAGTAGCAAGACTTAAATGTTTGTCT 57.274 29.630 0.00 0.00 40.95 3.41
1727 2055 4.519540 TCTTTTCCTACCTTGCAATTGC 57.480 40.909 23.69 23.69 42.50 3.56
1752 2080 1.137086 CTGTCCGTTGGTCAGGATAGG 59.863 57.143 2.65 0.00 40.63 2.57
1755 2083 2.963782 GTCCGTTGGTCAGGATAGGTAT 59.036 50.000 0.00 0.00 38.97 2.73
1762 2090 6.489361 CGTTGGTCAGGATAGGTATACTAGTT 59.511 42.308 0.00 0.00 34.56 2.24
1765 2093 5.185442 GGTCAGGATAGGTATACTAGTTGGC 59.815 48.000 0.00 0.00 34.56 4.52
1772 2100 4.796606 AGGTATACTAGTTGGCGGACTAA 58.203 43.478 0.00 0.00 32.10 2.24
1774 2102 6.546484 AGGTATACTAGTTGGCGGACTAATA 58.454 40.000 0.00 0.00 32.10 0.98
1776 2104 6.432472 GGTATACTAGTTGGCGGACTAATACT 59.568 42.308 0.00 0.00 32.02 2.12
1778 2106 4.275810 ACTAGTTGGCGGACTAATACTGA 58.724 43.478 0.00 0.00 32.10 3.41
1779 2107 4.708421 ACTAGTTGGCGGACTAATACTGAA 59.292 41.667 0.00 0.00 32.10 3.02
1780 2108 4.755266 AGTTGGCGGACTAATACTGAAT 57.245 40.909 0.00 0.00 0.00 2.57
1781 2109 5.864418 AGTTGGCGGACTAATACTGAATA 57.136 39.130 0.00 0.00 0.00 1.75
1782 2110 6.229936 AGTTGGCGGACTAATACTGAATAA 57.770 37.500 0.00 0.00 0.00 1.40
1783 2111 6.047231 AGTTGGCGGACTAATACTGAATAAC 58.953 40.000 0.00 0.00 0.00 1.89
1784 2112 5.864418 TGGCGGACTAATACTGAATAACT 57.136 39.130 0.00 0.00 0.00 2.24
1785 2113 6.964807 TGGCGGACTAATACTGAATAACTA 57.035 37.500 0.00 0.00 0.00 2.24
1786 2114 7.350744 TGGCGGACTAATACTGAATAACTAA 57.649 36.000 0.00 0.00 0.00 2.24
1787 2115 7.959175 TGGCGGACTAATACTGAATAACTAAT 58.041 34.615 0.00 0.00 0.00 1.73
1788 2116 9.081204 TGGCGGACTAATACTGAATAACTAATA 57.919 33.333 0.00 0.00 0.00 0.98
1789 2117 9.351570 GGCGGACTAATACTGAATAACTAATAC 57.648 37.037 0.00 0.00 0.00 1.89
1811 2139 9.531158 AATACTGGATAGGTATACTAGTTGGTC 57.469 37.037 0.00 0.00 34.56 4.02
1812 2140 6.919158 ACTGGATAGGTATACTAGTTGGTCA 58.081 40.000 0.00 0.00 34.56 4.02
1813 2141 7.005296 ACTGGATAGGTATACTAGTTGGTCAG 58.995 42.308 0.00 0.60 34.56 3.51
1836 2166 9.784531 TCAGAATATAGATGTTGGATTTCTTCC 57.215 33.333 0.00 0.00 45.69 3.46
1870 2201 3.577805 AGTGCACCCTAAAACTGTCTT 57.422 42.857 14.63 0.00 0.00 3.01
1876 2207 5.221762 TGCACCCTAAAACTGTCTTAGCTTA 60.222 40.000 0.00 0.00 0.00 3.09
1900 2231 6.648879 TTCTTTTGGTGCTTTAGTTGCTAT 57.351 33.333 0.00 0.00 0.00 2.97
1901 2232 6.254281 TCTTTTGGTGCTTTAGTTGCTATC 57.746 37.500 0.00 0.00 0.00 2.08
1902 2233 5.767665 TCTTTTGGTGCTTTAGTTGCTATCA 59.232 36.000 0.00 0.00 0.00 2.15
1903 2234 5.371115 TTTGGTGCTTTAGTTGCTATCAC 57.629 39.130 0.00 0.00 0.00 3.06
1904 2235 4.286297 TGGTGCTTTAGTTGCTATCACT 57.714 40.909 0.00 0.00 0.00 3.41
1905 2236 5.414789 TGGTGCTTTAGTTGCTATCACTA 57.585 39.130 0.00 0.00 0.00 2.74
1906 2237 5.989477 TGGTGCTTTAGTTGCTATCACTAT 58.011 37.500 0.00 0.00 0.00 2.12
1907 2238 6.414732 TGGTGCTTTAGTTGCTATCACTATT 58.585 36.000 0.00 0.00 0.00 1.73
1908 2239 6.884295 TGGTGCTTTAGTTGCTATCACTATTT 59.116 34.615 0.00 0.00 0.00 1.40
1909 2240 7.393234 TGGTGCTTTAGTTGCTATCACTATTTT 59.607 33.333 0.00 0.00 0.00 1.82
1910 2241 8.889717 GGTGCTTTAGTTGCTATCACTATTTTA 58.110 33.333 0.00 0.00 0.00 1.52
1918 2249 9.067986 AGTTGCTATCACTATTTTAAATAGCCC 57.932 33.333 20.75 5.86 42.54 5.19
1919 2250 7.667043 TGCTATCACTATTTTAAATAGCCCG 57.333 36.000 20.75 11.91 42.54 6.13
1920 2251 6.148811 TGCTATCACTATTTTAAATAGCCCGC 59.851 38.462 20.75 16.34 42.54 6.13
1921 2252 6.371825 GCTATCACTATTTTAAATAGCCCGCT 59.628 38.462 20.75 7.47 39.11 5.52
1922 2253 7.548075 GCTATCACTATTTTAAATAGCCCGCTA 59.452 37.037 20.75 0.00 39.11 4.26
1923 2254 9.601217 CTATCACTATTTTAAATAGCCCGCTAT 57.399 33.333 20.75 3.31 40.63 2.97
1925 2256 8.997621 TCACTATTTTAAATAGCCCGCTATAG 57.002 34.615 20.75 4.62 38.20 1.31
1926 2257 7.548075 TCACTATTTTAAATAGCCCGCTATAGC 59.452 37.037 20.75 15.09 38.20 2.97
1927 2258 7.549488 CACTATTTTAAATAGCCCGCTATAGCT 59.451 37.037 21.98 6.31 43.20 3.32
1928 2259 6.986904 ATTTTAAATAGCCCGCTATAGCTC 57.013 37.500 21.98 11.04 40.56 4.09
1929 2260 4.467198 TTAAATAGCCCGCTATAGCTCC 57.533 45.455 21.98 10.06 40.56 4.70
1930 2261 0.818296 AATAGCCCGCTATAGCTCCG 59.182 55.000 21.98 10.15 40.56 4.63
1931 2262 1.668101 ATAGCCCGCTATAGCTCCGC 61.668 60.000 21.98 18.46 40.56 5.54
1932 2263 2.766306 TAGCCCGCTATAGCTCCGCT 62.766 60.000 24.41 24.41 43.41 5.52
1933 2264 2.341101 GCCCGCTATAGCTCCGCTA 61.341 63.158 21.98 0.00 45.55 4.26
1941 2272 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
1942 2273 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
1943 2274 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
1944 2275 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
1945 2276 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
1963 2294 6.418585 GCTATAGCGTTTACAAAAGGTCTT 57.581 37.500 9.40 0.00 31.10 3.01
1964 2295 6.248631 GCTATAGCGTTTACAAAAGGTCTTG 58.751 40.000 9.40 0.00 31.10 3.02
1965 2296 3.349488 AGCGTTTACAAAAGGTCTTGC 57.651 42.857 0.00 0.00 0.00 4.01
1966 2297 2.041244 GCGTTTACAAAAGGTCTTGCG 58.959 47.619 0.00 0.00 0.00 4.85
1967 2298 2.041244 CGTTTACAAAAGGTCTTGCGC 58.959 47.619 0.00 0.00 0.00 6.09
1968 2299 2.286772 CGTTTACAAAAGGTCTTGCGCT 60.287 45.455 9.73 0.00 0.00 5.92
1969 2300 3.059461 CGTTTACAAAAGGTCTTGCGCTA 60.059 43.478 9.73 0.00 0.00 4.26
1970 2301 4.553156 CGTTTACAAAAGGTCTTGCGCTAA 60.553 41.667 9.73 0.00 0.00 3.09
1971 2302 4.742438 TTACAAAAGGTCTTGCGCTAAG 57.258 40.909 9.73 11.02 37.76 2.18
1972 2303 2.846193 ACAAAAGGTCTTGCGCTAAGA 58.154 42.857 9.73 13.31 43.01 2.10
1973 2304 2.808543 ACAAAAGGTCTTGCGCTAAGAG 59.191 45.455 18.44 10.73 45.71 2.85
1974 2305 3.067106 CAAAAGGTCTTGCGCTAAGAGA 58.933 45.455 18.44 9.99 45.71 3.10
1975 2306 2.371910 AAGGTCTTGCGCTAAGAGAC 57.628 50.000 18.44 18.59 45.71 3.36
1976 2307 1.551452 AGGTCTTGCGCTAAGAGACT 58.449 50.000 22.91 18.83 45.71 3.24
1977 2308 1.896465 AGGTCTTGCGCTAAGAGACTT 59.104 47.619 22.91 17.23 45.71 3.01
1978 2309 2.300437 AGGTCTTGCGCTAAGAGACTTT 59.700 45.455 22.91 14.31 45.71 2.66
1979 2310 2.413453 GGTCTTGCGCTAAGAGACTTTG 59.587 50.000 22.91 0.00 45.71 2.77
1980 2311 2.413453 GTCTTGCGCTAAGAGACTTTGG 59.587 50.000 18.44 0.00 45.71 3.28
1981 2312 2.037251 TCTTGCGCTAAGAGACTTTGGT 59.963 45.455 9.73 0.00 40.43 3.67
1982 2313 2.080286 TGCGCTAAGAGACTTTGGTC 57.920 50.000 9.73 0.00 42.41 4.02
1983 2314 1.337823 TGCGCTAAGAGACTTTGGTCC 60.338 52.381 9.73 0.00 43.05 4.46
1984 2315 1.337823 GCGCTAAGAGACTTTGGTCCA 60.338 52.381 0.00 0.00 43.05 4.02
1985 2316 2.870435 GCGCTAAGAGACTTTGGTCCAA 60.870 50.000 0.00 0.00 43.05 3.53
1986 2317 3.399330 CGCTAAGAGACTTTGGTCCAAA 58.601 45.455 16.26 16.26 43.05 3.28
1987 2318 3.186613 CGCTAAGAGACTTTGGTCCAAAC 59.813 47.826 13.26 4.96 43.05 2.93
1988 2319 4.134563 GCTAAGAGACTTTGGTCCAAACA 58.865 43.478 13.26 0.00 43.05 2.83
1989 2320 4.578928 GCTAAGAGACTTTGGTCCAAACAA 59.421 41.667 13.26 0.00 43.05 2.83
1990 2321 5.067283 GCTAAGAGACTTTGGTCCAAACAAA 59.933 40.000 13.26 0.00 43.05 2.83
1991 2322 6.239036 GCTAAGAGACTTTGGTCCAAACAAAT 60.239 38.462 13.26 0.00 43.05 2.32
1992 2323 5.520376 AGAGACTTTGGTCCAAACAAATG 57.480 39.130 13.26 6.01 43.05 2.32
1993 2324 5.200483 AGAGACTTTGGTCCAAACAAATGA 58.800 37.500 13.26 0.00 43.05 2.57
1994 2325 5.656416 AGAGACTTTGGTCCAAACAAATGAA 59.344 36.000 13.26 0.00 43.05 2.57
1995 2326 5.660460 AGACTTTGGTCCAAACAAATGAAC 58.340 37.500 13.26 4.31 43.05 3.18
1996 2327 5.186797 AGACTTTGGTCCAAACAAATGAACA 59.813 36.000 13.26 0.00 43.05 3.18
1997 2328 5.799213 ACTTTGGTCCAAACAAATGAACAA 58.201 33.333 13.26 0.00 37.22 2.83
1998 2329 6.234177 ACTTTGGTCCAAACAAATGAACAAA 58.766 32.000 13.26 0.00 41.86 2.83
1999 2330 6.712547 ACTTTGGTCCAAACAAATGAACAAAA 59.287 30.769 13.26 0.00 43.03 2.44
2000 2331 7.229506 ACTTTGGTCCAAACAAATGAACAAAAA 59.770 29.630 13.26 0.00 43.03 1.94
2001 2332 6.487689 TGGTCCAAACAAATGAACAAAAAC 57.512 33.333 0.00 0.00 0.00 2.43
2002 2333 5.997746 TGGTCCAAACAAATGAACAAAAACA 59.002 32.000 0.00 0.00 0.00 2.83
2003 2334 6.656693 TGGTCCAAACAAATGAACAAAAACAT 59.343 30.769 0.00 0.00 0.00 2.71
2004 2335 7.175641 TGGTCCAAACAAATGAACAAAAACATT 59.824 29.630 0.00 0.00 38.18 2.71
2005 2336 8.026026 GGTCCAAACAAATGAACAAAAACATTT 58.974 29.630 0.00 0.00 44.17 2.32
2006 2337 9.404348 GTCCAAACAAATGAACAAAAACATTTT 57.596 25.926 0.00 0.00 42.35 1.82
2015 2346 9.592720 AATGAACAAAAACATTTTAAATAGCGC 57.407 25.926 0.00 0.00 33.72 5.92
2016 2347 7.277205 TGAACAAAAACATTTTAAATAGCGCG 58.723 30.769 0.00 0.00 0.00 6.86
2017 2348 5.604389 ACAAAAACATTTTAAATAGCGCGC 58.396 33.333 26.66 26.66 0.00 6.86
2018 2349 5.404066 ACAAAAACATTTTAAATAGCGCGCT 59.596 32.000 38.01 38.01 0.00 5.92
2019 2350 6.583050 ACAAAAACATTTTAAATAGCGCGCTA 59.417 30.769 39.72 39.72 0.00 4.26
2020 2351 7.274686 ACAAAAACATTTTAAATAGCGCGCTAT 59.725 29.630 40.32 40.32 40.63 2.97
2021 2352 8.738554 CAAAAACATTTTAAATAGCGCGCTATA 58.261 29.630 43.81 31.73 38.20 1.31
2022 2353 8.488979 AAAACATTTTAAATAGCGCGCTATAG 57.511 30.769 43.81 29.40 38.20 1.31
2023 2354 5.618561 ACATTTTAAATAGCGCGCTATAGC 58.381 37.500 43.81 15.09 38.20 2.97
2024 2355 5.408604 ACATTTTAAATAGCGCGCTATAGCT 59.591 36.000 43.81 33.17 46.53 3.32
2025 2356 5.511088 TTTTAAATAGCGCGCTATAGCTC 57.489 39.130 43.81 13.77 43.44 4.09
2026 2357 1.997669 AAATAGCGCGCTATAGCTCC 58.002 50.000 43.81 10.26 43.44 4.70
2027 2358 0.179161 AATAGCGCGCTATAGCTCCG 60.179 55.000 43.81 22.32 43.44 4.63
2030 2361 2.868196 CGCGCTATAGCTCCGCTA 59.132 61.111 21.98 0.00 45.55 4.26
2038 2369 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
2039 2370 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
2040 2371 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
2041 2372 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
2042 2373 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
2051 2382 6.951256 CTATAGCACGCTATAGCATTTGAA 57.049 37.500 25.42 9.81 46.26 2.69
2052 2383 7.351414 CTATAGCACGCTATAGCATTTGAAA 57.649 36.000 25.42 9.51 46.26 2.69
2053 2384 4.542662 AGCACGCTATAGCATTTGAAAG 57.457 40.909 23.99 7.87 42.21 2.62
2054 2385 4.191544 AGCACGCTATAGCATTTGAAAGA 58.808 39.130 23.99 0.00 42.21 2.52
2055 2386 4.272018 AGCACGCTATAGCATTTGAAAGAG 59.728 41.667 23.99 6.48 42.21 2.85
2056 2387 4.553547 GCACGCTATAGCATTTGAAAGAGG 60.554 45.833 23.99 5.98 42.21 3.69
2057 2388 4.572389 CACGCTATAGCATTTGAAAGAGGT 59.428 41.667 23.99 6.60 42.21 3.85
2058 2389 4.811557 ACGCTATAGCATTTGAAAGAGGTC 59.188 41.667 23.99 0.00 42.21 3.85
2059 2390 4.212214 CGCTATAGCATTTGAAAGAGGTCC 59.788 45.833 23.99 0.00 42.21 4.46
2060 2391 4.212214 GCTATAGCATTTGAAAGAGGTCCG 59.788 45.833 20.01 0.00 41.59 4.79
2061 2392 1.168714 AGCATTTGAAAGAGGTCCGC 58.831 50.000 0.00 0.00 0.00 5.54
2062 2393 0.171231 GCATTTGAAAGAGGTCCGCC 59.829 55.000 0.00 0.00 0.00 6.13
2063 2394 0.447801 CATTTGAAAGAGGTCCGCCG 59.552 55.000 0.00 0.00 40.50 6.46
2064 2395 1.305930 ATTTGAAAGAGGTCCGCCGC 61.306 55.000 0.00 0.00 40.50 6.53
2066 2397 1.537814 TTGAAAGAGGTCCGCCGCTA 61.538 55.000 0.00 0.00 44.34 4.26
2067 2398 1.217244 GAAAGAGGTCCGCCGCTAA 59.783 57.895 0.00 0.00 44.34 3.09
2068 2399 0.806492 GAAAGAGGTCCGCCGCTAAG 60.806 60.000 0.00 0.00 44.34 2.18
2069 2400 1.255667 AAAGAGGTCCGCCGCTAAGA 61.256 55.000 0.00 0.00 44.34 2.10
2070 2401 1.043673 AAGAGGTCCGCCGCTAAGAT 61.044 55.000 0.00 0.00 44.34 2.40
2071 2402 1.300233 GAGGTCCGCCGCTAAGATG 60.300 63.158 0.00 0.00 40.50 2.90
2072 2403 2.967615 GGTCCGCCGCTAAGATGC 60.968 66.667 0.00 0.00 0.00 3.91
2073 2404 2.107141 GTCCGCCGCTAAGATGCT 59.893 61.111 0.00 0.00 0.00 3.79
2074 2405 1.521681 GTCCGCCGCTAAGATGCTT 60.522 57.895 0.00 0.00 0.00 3.91
2075 2406 0.249322 GTCCGCCGCTAAGATGCTTA 60.249 55.000 0.00 0.00 0.00 3.09
2076 2407 0.032130 TCCGCCGCTAAGATGCTTAG 59.968 55.000 9.30 9.30 0.00 2.18
2077 2408 1.560860 CCGCCGCTAAGATGCTTAGC 61.561 60.000 22.75 22.75 42.82 3.09
2081 2412 1.202816 GCTAAGATGCTTAGCGCGC 59.797 57.895 26.66 26.66 43.27 6.86
2082 2413 1.218230 GCTAAGATGCTTAGCGCGCT 61.218 55.000 38.01 38.01 43.27 5.92
2083 2414 1.930817 GCTAAGATGCTTAGCGCGCTA 60.931 52.381 35.48 35.48 43.27 4.26
2084 2415 2.600731 CTAAGATGCTTAGCGCGCTAT 58.399 47.619 38.51 26.50 43.27 2.97
2085 2416 1.871080 AAGATGCTTAGCGCGCTATT 58.129 45.000 38.51 26.01 43.27 1.73
2086 2417 1.871080 AGATGCTTAGCGCGCTATTT 58.129 45.000 38.51 23.54 43.27 1.40
2087 2418 3.026630 AGATGCTTAGCGCGCTATTTA 57.973 42.857 38.51 26.65 43.27 1.40
2088 2419 3.390135 AGATGCTTAGCGCGCTATTTAA 58.610 40.909 38.51 25.53 43.27 1.52
2089 2420 3.807622 AGATGCTTAGCGCGCTATTTAAA 59.192 39.130 38.51 25.16 43.27 1.52
2090 2421 4.272504 AGATGCTTAGCGCGCTATTTAAAA 59.727 37.500 38.51 24.43 43.27 1.52
2091 2422 3.676540 TGCTTAGCGCGCTATTTAAAAC 58.323 40.909 38.51 22.00 43.27 2.43
2092 2423 3.372822 TGCTTAGCGCGCTATTTAAAACT 59.627 39.130 38.51 14.50 43.27 2.66
2093 2424 4.142773 TGCTTAGCGCGCTATTTAAAACTT 60.143 37.500 38.51 13.94 43.27 2.66
2094 2425 4.791676 GCTTAGCGCGCTATTTAAAACTTT 59.208 37.500 38.51 13.72 0.00 2.66
2095 2426 5.275280 GCTTAGCGCGCTATTTAAAACTTTG 60.275 40.000 38.51 15.49 0.00 2.77
2096 2427 3.498082 AGCGCGCTATTTAAAACTTTGG 58.502 40.909 35.79 0.00 0.00 3.28
2097 2428 3.057806 AGCGCGCTATTTAAAACTTTGGT 60.058 39.130 35.79 0.63 0.00 3.67
2098 2429 3.671459 GCGCGCTATTTAAAACTTTGGTT 59.329 39.130 26.67 0.00 37.24 3.67
2099 2430 4.432373 GCGCGCTATTTAAAACTTTGGTTG 60.432 41.667 26.67 0.00 35.63 3.77
2100 2431 4.432373 CGCGCTATTTAAAACTTTGGTTGC 60.432 41.667 5.56 0.00 35.63 4.17
2101 2432 4.684242 GCGCTATTTAAAACTTTGGTTGCT 59.316 37.500 0.00 0.00 35.63 3.91
2102 2433 5.859648 GCGCTATTTAAAACTTTGGTTGCTA 59.140 36.000 0.00 0.00 35.63 3.49
2116 2447 8.674607 ACTTTGGTTGCTATGCTAATTTAGTAC 58.325 33.333 5.38 0.00 0.00 2.73
2117 2448 8.801882 TTTGGTTGCTATGCTAATTTAGTACT 57.198 30.769 0.00 0.00 0.00 2.73
2119 2450 8.208718 TGGTTGCTATGCTAATTTAGTACTTG 57.791 34.615 0.00 0.00 0.00 3.16
2120 2451 7.827236 TGGTTGCTATGCTAATTTAGTACTTGT 59.173 33.333 0.00 0.00 0.00 3.16
2121 2452 9.321562 GGTTGCTATGCTAATTTAGTACTTGTA 57.678 33.333 0.00 0.00 0.00 2.41
2123 2454 9.542462 TTGCTATGCTAATTTAGTACTTGTAGG 57.458 33.333 0.00 0.00 0.00 3.18
2124 2455 8.920174 TGCTATGCTAATTTAGTACTTGTAGGA 58.080 33.333 0.00 0.00 0.00 2.94
2125 2456 9.760077 GCTATGCTAATTTAGTACTTGTAGGAA 57.240 33.333 0.00 0.00 0.00 3.36
2205 2536 9.895138 TTATTACCTTAAGTTAATCTGACACCC 57.105 33.333 8.40 0.00 0.00 4.61
2206 2537 7.563724 TTACCTTAAGTTAATCTGACACCCT 57.436 36.000 0.97 0.00 0.00 4.34
2207 2538 8.669055 TTACCTTAAGTTAATCTGACACCCTA 57.331 34.615 0.97 0.00 0.00 3.53
2208 2539 7.563724 ACCTTAAGTTAATCTGACACCCTAA 57.436 36.000 0.97 0.00 0.00 2.69
2209 2540 7.981142 ACCTTAAGTTAATCTGACACCCTAAA 58.019 34.615 0.97 0.00 0.00 1.85
2210 2541 8.442374 ACCTTAAGTTAATCTGACACCCTAAAA 58.558 33.333 0.97 0.00 0.00 1.52
2211 2542 8.727910 CCTTAAGTTAATCTGACACCCTAAAAC 58.272 37.037 0.97 0.00 0.00 2.43
2212 2543 9.503399 CTTAAGTTAATCTGACACCCTAAAACT 57.497 33.333 0.00 0.00 0.00 2.66
2213 2544 7.745620 AAGTTAATCTGACACCCTAAAACTG 57.254 36.000 0.00 0.00 0.00 3.16
2214 2545 6.838382 AGTTAATCTGACACCCTAAAACTGT 58.162 36.000 0.00 0.00 0.00 3.55
2215 2546 6.935208 AGTTAATCTGACACCCTAAAACTGTC 59.065 38.462 0.00 0.00 35.79 3.51
2216 2547 4.974645 ATCTGACACCCTAAAACTGTCA 57.025 40.909 0.00 0.00 41.54 3.58
2217 2548 4.974645 TCTGACACCCTAAAACTGTCAT 57.025 40.909 0.44 0.00 42.55 3.06
2218 2549 6.620877 ATCTGACACCCTAAAACTGTCATA 57.379 37.500 0.44 0.00 42.55 2.15
2219 2550 6.037786 TCTGACACCCTAAAACTGTCATAG 57.962 41.667 0.44 0.00 42.55 2.23
2220 2551 5.542635 TCTGACACCCTAAAACTGTCATAGT 59.457 40.000 0.44 0.00 42.55 2.12
2221 2552 6.722590 TCTGACACCCTAAAACTGTCATAGTA 59.277 38.462 0.44 0.00 42.55 1.82
2222 2553 7.399191 TCTGACACCCTAAAACTGTCATAGTAT 59.601 37.037 0.44 0.00 42.55 2.12
2223 2554 8.598202 TGACACCCTAAAACTGTCATAGTATA 57.402 34.615 0.00 0.00 39.47 1.47
2224 2555 9.209048 TGACACCCTAAAACTGTCATAGTATAT 57.791 33.333 0.00 0.00 39.47 0.86
2234 2565 8.905660 AACTGTCATAGTATATACTCACTCGT 57.094 34.615 18.68 11.74 39.18 4.18
2235 2566 8.905660 ACTGTCATAGTATATACTCACTCGTT 57.094 34.615 18.68 0.00 38.04 3.85
2236 2567 8.991026 ACTGTCATAGTATATACTCACTCGTTC 58.009 37.037 18.68 4.38 38.04 3.95
2237 2568 8.320396 TGTCATAGTATATACTCACTCGTTCC 57.680 38.462 18.68 0.71 37.73 3.62
2238 2569 7.935210 TGTCATAGTATATACTCACTCGTTCCA 59.065 37.037 18.68 0.00 37.73 3.53
2239 2570 8.781196 GTCATAGTATATACTCACTCGTTCCAA 58.219 37.037 18.68 0.00 37.73 3.53
2240 2571 9.346005 TCATAGTATATACTCACTCGTTCCAAA 57.654 33.333 18.68 0.00 37.73 3.28
2241 2572 9.961265 CATAGTATATACTCACTCGTTCCAAAA 57.039 33.333 18.68 0.00 37.73 2.44
2247 2578 5.924475 ACTCACTCGTTCCAAAATAAGTG 57.076 39.130 0.00 0.00 33.99 3.16
2248 2579 5.365619 ACTCACTCGTTCCAAAATAAGTGT 58.634 37.500 0.00 0.00 34.19 3.55
2249 2580 5.820947 ACTCACTCGTTCCAAAATAAGTGTT 59.179 36.000 0.00 0.00 34.19 3.32
2250 2581 6.317893 ACTCACTCGTTCCAAAATAAGTGTTT 59.682 34.615 0.00 0.00 34.19 2.83
2251 2582 6.491394 TCACTCGTTCCAAAATAAGTGTTTG 58.509 36.000 0.00 0.00 34.19 2.93
2252 2583 6.316640 TCACTCGTTCCAAAATAAGTGTTTGA 59.683 34.615 0.00 0.00 38.05 2.69
2253 2584 6.970043 CACTCGTTCCAAAATAAGTGTTTGAA 59.030 34.615 0.00 0.00 38.05 2.69
2254 2585 6.970613 ACTCGTTCCAAAATAAGTGTTTGAAC 59.029 34.615 0.00 0.00 38.05 3.18
2255 2586 7.090953 TCGTTCCAAAATAAGTGTTTGAACT 57.909 32.000 0.00 0.00 38.05 3.01
2256 2587 8.211116 TCGTTCCAAAATAAGTGTTTGAACTA 57.789 30.769 0.00 0.00 38.05 2.24
2257 2588 8.675504 TCGTTCCAAAATAAGTGTTTGAACTAA 58.324 29.630 0.00 0.00 38.05 2.24
2258 2589 9.291664 CGTTCCAAAATAAGTGTTTGAACTAAA 57.708 29.630 0.00 0.00 38.05 1.85
2269 2600 6.243811 TGTTTGAACTAAAAACACGACACT 57.756 33.333 0.00 0.00 41.37 3.55
2270 2601 6.670233 TGTTTGAACTAAAAACACGACACTT 58.330 32.000 0.00 0.00 41.37 3.16
2271 2602 7.804712 TGTTTGAACTAAAAACACGACACTTA 58.195 30.769 0.00 0.00 41.37 2.24
2272 2603 8.452534 TGTTTGAACTAAAAACACGACACTTAT 58.547 29.630 0.00 0.00 41.37 1.73
2273 2604 9.281075 GTTTGAACTAAAAACACGACACTTATT 57.719 29.630 0.00 0.00 37.45 1.40
2274 2605 9.843334 TTTGAACTAAAAACACGACACTTATTT 57.157 25.926 0.00 0.00 0.00 1.40
2275 2606 9.843334 TTGAACTAAAAACACGACACTTATTTT 57.157 25.926 0.00 0.00 0.00 1.82
2276 2607 9.279904 TGAACTAAAAACACGACACTTATTTTG 57.720 29.630 0.00 0.00 0.00 2.44
2277 2608 8.623310 AACTAAAAACACGACACTTATTTTGG 57.377 30.769 0.00 0.00 0.00 3.28
2278 2609 7.987649 ACTAAAAACACGACACTTATTTTGGA 58.012 30.769 0.00 0.00 0.00 3.53
2279 2610 8.460428 ACTAAAAACACGACACTTATTTTGGAA 58.540 29.630 0.00 0.00 0.00 3.53
2280 2611 9.458374 CTAAAAACACGACACTTATTTTGGAAT 57.542 29.630 0.00 0.00 0.00 3.01
2281 2612 7.692908 AAAACACGACACTTATTTTGGAATG 57.307 32.000 0.00 0.00 0.00 2.67
2282 2613 5.371115 ACACGACACTTATTTTGGAATGG 57.629 39.130 0.00 0.00 0.00 3.16
2283 2614 5.067273 ACACGACACTTATTTTGGAATGGA 58.933 37.500 0.00 0.00 0.00 3.41
2284 2615 5.181245 ACACGACACTTATTTTGGAATGGAG 59.819 40.000 0.00 0.00 0.00 3.86
2285 2616 4.700213 ACGACACTTATTTTGGAATGGAGG 59.300 41.667 0.00 0.00 0.00 4.30
2286 2617 4.096382 CGACACTTATTTTGGAATGGAGGG 59.904 45.833 0.00 0.00 0.00 4.30
2287 2618 5.261216 GACACTTATTTTGGAATGGAGGGA 58.739 41.667 0.00 0.00 0.00 4.20
2288 2619 5.650283 ACACTTATTTTGGAATGGAGGGAA 58.350 37.500 0.00 0.00 0.00 3.97
2289 2620 6.263754 ACACTTATTTTGGAATGGAGGGAAT 58.736 36.000 0.00 0.00 0.00 3.01
2290 2621 7.418378 ACACTTATTTTGGAATGGAGGGAATA 58.582 34.615 0.00 0.00 0.00 1.75
2291 2622 8.067488 ACACTTATTTTGGAATGGAGGGAATAT 58.933 33.333 0.00 0.00 0.00 1.28
2292 2623 8.927411 CACTTATTTTGGAATGGAGGGAATATT 58.073 33.333 0.00 0.00 0.00 1.28
2293 2624 9.506042 ACTTATTTTGGAATGGAGGGAATATTT 57.494 29.630 0.00 0.00 0.00 1.40
2379 2713 3.328931 TCTTTCTGGAGAATGAGTGCCTT 59.671 43.478 1.79 0.00 34.56 4.35
2389 2723 7.233348 TGGAGAATGAGTGCCTTAAATTTCTTT 59.767 33.333 0.00 0.00 0.00 2.52
2399 2744 7.429051 GTGCCTTAAATTTCTTTTGCTTGTTTG 59.571 33.333 0.00 0.00 0.00 2.93
2851 3253 3.188048 GCAACAATGTCTCAGAGGTTCAG 59.812 47.826 0.00 0.00 0.00 3.02
2882 3284 2.029649 TGCTTCATCTTTTGCTTCTGCC 60.030 45.455 0.00 0.00 38.71 4.85
2902 3304 2.071778 GCCCTTCATTGGCTTATGGA 57.928 50.000 0.00 0.00 45.70 3.41
2961 3363 8.466798 CCCGATTTCTTCACAAGGTATTTATTT 58.533 33.333 0.00 0.00 0.00 1.40
3002 3418 6.259387 TCATCATGTCATTAGTGATGCAGAAC 59.741 38.462 8.64 0.00 45.44 3.01
3249 3695 7.112122 TGTGTTCTCCATCTTATGTATTTGCT 58.888 34.615 0.00 0.00 0.00 3.91
3378 3835 7.819900 AGAGTCACTTTCTGGTGTTATTCATAC 59.180 37.037 0.00 0.00 38.28 2.39
3533 3990 5.023533 TGATGCTAAGGATGACTGGTAAC 57.976 43.478 0.00 0.00 0.00 2.50
3584 4046 4.318332 CAGAGTCTGCACTAATTTCACCA 58.682 43.478 7.33 0.00 30.63 4.17
3652 4123 9.243637 CATCTTTTTACTTTCATTTTGTTCCGA 57.756 29.630 0.00 0.00 0.00 4.55
3683 4155 2.732844 TGTTTGGGGTACTTCCGTTT 57.267 45.000 0.00 0.00 37.00 3.60
3731 4204 3.324846 TGTGCTCTCTTTGCTCCTTTCTA 59.675 43.478 0.00 0.00 0.00 2.10
3752 4225 0.044092 TGAAGGGGGCAGTCCATCTA 59.956 55.000 0.00 0.00 37.22 1.98
3774 4272 9.736414 ATCTATTTCACAGGGAATTATCATCTG 57.264 33.333 0.00 0.00 34.91 2.90
3777 4275 5.378230 TCACAGGGAATTATCATCTGCTT 57.622 39.130 0.00 0.00 34.03 3.91
3819 4323 3.275617 AGCGACAATACCTTGGCATTA 57.724 42.857 0.00 0.00 40.74 1.90
3823 4327 4.036262 GCGACAATACCTTGGCATTATGAA 59.964 41.667 0.00 0.00 40.74 2.57
3825 4329 6.559810 CGACAATACCTTGGCATTATGAAAA 58.440 36.000 0.00 0.00 40.74 2.29
3833 4337 7.396418 ACCTTGGCATTATGAAAATTTGATGT 58.604 30.769 0.00 0.00 0.00 3.06
3839 4343 7.964011 GGCATTATGAAAATTTGATGTTTGTGG 59.036 33.333 0.00 0.00 0.00 4.17
3850 4354 3.752747 TGATGTTTGTGGTAGTGCATCAG 59.247 43.478 0.00 0.00 38.10 2.90
3861 4366 8.673711 TGTGGTAGTGCATCAGTTTTTATTATC 58.326 33.333 0.00 0.00 0.00 1.75
3998 4509 8.541234 TGTGTATAGTTTATTGTGTACATCCCA 58.459 33.333 0.00 0.00 0.00 4.37
3999 4510 9.555727 GTGTATAGTTTATTGTGTACATCCCAT 57.444 33.333 0.00 0.00 0.00 4.00
4000 4511 9.772973 TGTATAGTTTATTGTGTACATCCCATC 57.227 33.333 0.00 0.00 0.00 3.51
4001 4512 9.772973 GTATAGTTTATTGTGTACATCCCATCA 57.227 33.333 0.00 0.00 0.00 3.07
4066 4578 1.839424 CCTTTGGCCCTCAGTAAAGG 58.161 55.000 13.85 13.85 42.05 3.11
4067 4579 1.177401 CTTTGGCCCTCAGTAAAGGC 58.823 55.000 0.00 0.00 46.37 4.35
4069 4581 0.328258 TTGGCCCTCAGTAAAGGCTC 59.672 55.000 0.00 0.00 46.31 4.70
4105 4617 6.806668 TCCAACATGGTATCAGATGTTAGA 57.193 37.500 0.00 0.00 40.12 2.10
4112 4624 6.672266 TGGTATCAGATGTTAGATTCCTCC 57.328 41.667 0.00 0.00 34.09 4.30
4144 4656 3.290948 ACTCCGTGCTAGATCTTCTCT 57.709 47.619 0.00 0.00 38.06 3.10
4147 4659 2.173782 TCCGTGCTAGATCTTCTCTCCT 59.826 50.000 0.00 0.00 35.28 3.69
4213 4725 3.378399 GAGCTCTGCCCGGTCTTCC 62.378 68.421 6.43 0.00 0.00 3.46
4215 4727 2.896443 CTCTGCCCGGTCTTCCTC 59.104 66.667 0.00 0.00 0.00 3.71
4216 4728 3.068691 TCTGCCCGGTCTTCCTCG 61.069 66.667 0.00 0.00 0.00 4.63
4217 4729 4.821589 CTGCCCGGTCTTCCTCGC 62.822 72.222 0.00 0.00 0.00 5.03
4224 4736 4.208686 GTCTTCCTCGCCGCGGAT 62.209 66.667 33.48 0.00 0.00 4.18
4225 4737 3.900892 TCTTCCTCGCCGCGGATC 61.901 66.667 33.48 11.71 0.00 3.36
4226 4738 4.951963 CTTCCTCGCCGCGGATCC 62.952 72.222 33.48 10.82 0.00 3.36
4245 4757 2.361610 CCGGGGCTTGCTTGTCAT 60.362 61.111 0.00 0.00 0.00 3.06
4246 4758 2.703798 CCGGGGCTTGCTTGTCATG 61.704 63.158 0.00 0.00 0.00 3.07
4247 4759 1.973281 CGGGGCTTGCTTGTCATGT 60.973 57.895 0.00 0.00 0.00 3.21
4248 4760 1.588082 GGGGCTTGCTTGTCATGTG 59.412 57.895 0.00 0.00 0.00 3.21
4249 4761 1.080298 GGGCTTGCTTGTCATGTGC 60.080 57.895 0.00 0.00 0.00 4.57
4250 4762 1.080298 GGCTTGCTTGTCATGTGCC 60.080 57.895 0.00 0.00 0.00 5.01
4251 4763 1.080298 GCTTGCTTGTCATGTGCCC 60.080 57.895 0.00 0.00 0.00 5.36
4252 4764 1.210931 CTTGCTTGTCATGTGCCCG 59.789 57.895 0.00 0.00 0.00 6.13
4253 4765 2.203972 CTTGCTTGTCATGTGCCCGG 62.204 60.000 0.00 0.00 0.00 5.73
4254 4766 2.672996 GCTTGTCATGTGCCCGGT 60.673 61.111 0.00 0.00 0.00 5.28
4255 4767 2.690778 GCTTGTCATGTGCCCGGTC 61.691 63.158 0.00 0.00 0.00 4.79
4256 4768 1.003355 CTTGTCATGTGCCCGGTCT 60.003 57.895 0.00 0.00 0.00 3.85
4257 4769 0.606401 CTTGTCATGTGCCCGGTCTT 60.606 55.000 0.00 0.00 0.00 3.01
4258 4770 0.605319 TTGTCATGTGCCCGGTCTTC 60.605 55.000 0.00 0.00 0.00 2.87
4259 4771 1.745489 GTCATGTGCCCGGTCTTCC 60.745 63.158 0.00 0.00 0.00 3.46
4260 4772 2.438434 CATGTGCCCGGTCTTCCC 60.438 66.667 0.00 0.00 0.00 3.97
4342 4854 2.992689 TTGCTCGTCCCGTGCCTA 60.993 61.111 8.02 0.00 44.12 3.93
4492 5403 4.567385 CCTCTCCTCGAGCGCTGC 62.567 72.222 18.48 5.60 38.49 5.25
4530 5441 4.069232 CGCGGGGCTTCTCTCACA 62.069 66.667 0.00 0.00 0.00 3.58
4531 5442 2.586792 GCGGGGCTTCTCTCACAT 59.413 61.111 0.00 0.00 0.00 3.21
4532 5443 1.522580 GCGGGGCTTCTCTCACATC 60.523 63.158 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.896744 CATGTGTTAATTGATCATGTAGAACCT 58.103 33.333 0.00 0.00 33.53 3.50
14 15 8.677300 ACATGTGTTAATTGATCATGTAGAACC 58.323 33.333 16.34 0.00 44.37 3.62
15 16 9.494479 CACATGTGTTAATTGATCATGTAGAAC 57.506 33.333 18.03 0.00 44.38 3.01
16 17 8.183536 GCACATGTGTTAATTGATCATGTAGAA 58.816 33.333 26.01 0.00 44.38 2.10
17 18 7.336427 TGCACATGTGTTAATTGATCATGTAGA 59.664 33.333 26.01 8.94 44.38 2.59
18 19 7.474190 TGCACATGTGTTAATTGATCATGTAG 58.526 34.615 26.01 13.86 44.38 2.74
19 20 7.388460 TGCACATGTGTTAATTGATCATGTA 57.612 32.000 26.01 6.71 44.38 2.29
20 21 6.270156 TGCACATGTGTTAATTGATCATGT 57.730 33.333 26.01 13.85 46.20 3.21
21 22 6.586844 TGTTGCACATGTGTTAATTGATCATG 59.413 34.615 26.01 12.96 40.80 3.07
22 23 6.689554 TGTTGCACATGTGTTAATTGATCAT 58.310 32.000 26.01 0.00 0.00 2.45
23 24 6.081872 TGTTGCACATGTGTTAATTGATCA 57.918 33.333 26.01 9.97 0.00 2.92
24 25 6.420306 TGTTGTTGCACATGTGTTAATTGATC 59.580 34.615 26.01 7.46 0.00 2.92
25 26 6.279123 TGTTGTTGCACATGTGTTAATTGAT 58.721 32.000 26.01 0.00 0.00 2.57
26 27 5.654497 TGTTGTTGCACATGTGTTAATTGA 58.346 33.333 26.01 9.68 0.00 2.57
27 28 5.963140 TGTTGTTGCACATGTGTTAATTG 57.037 34.783 26.01 0.01 0.00 2.32
28 29 7.408123 CAAATGTTGTTGCACATGTGTTAATT 58.592 30.769 26.01 13.37 37.54 1.40
29 30 6.946165 CAAATGTTGTTGCACATGTGTTAAT 58.054 32.000 26.01 8.66 37.54 1.40
30 31 6.341880 CAAATGTTGTTGCACATGTGTTAA 57.658 33.333 26.01 18.27 37.54 2.01
31 32 5.963140 CAAATGTTGTTGCACATGTGTTA 57.037 34.783 26.01 13.53 37.54 2.41
32 33 4.861389 CAAATGTTGTTGCACATGTGTT 57.139 36.364 26.01 7.89 37.54 3.32
42 43 2.539274 CCGTGGAAAGCAAATGTTGTTG 59.461 45.455 0.00 0.00 0.00 3.33
43 44 2.428890 TCCGTGGAAAGCAAATGTTGTT 59.571 40.909 0.00 0.00 0.00 2.83
44 45 2.028130 TCCGTGGAAAGCAAATGTTGT 58.972 42.857 0.00 0.00 0.00 3.32
45 46 2.791383 TCCGTGGAAAGCAAATGTTG 57.209 45.000 0.00 0.00 0.00 3.33
46 47 2.627699 ACATCCGTGGAAAGCAAATGTT 59.372 40.909 0.00 0.00 0.00 2.71
47 48 2.238521 ACATCCGTGGAAAGCAAATGT 58.761 42.857 0.00 0.00 0.00 2.71
48 49 4.637483 ATACATCCGTGGAAAGCAAATG 57.363 40.909 0.00 0.00 0.00 2.32
49 50 5.659440 AAATACATCCGTGGAAAGCAAAT 57.341 34.783 0.00 0.00 0.00 2.32
50 51 5.461032 AAAATACATCCGTGGAAAGCAAA 57.539 34.783 0.00 0.00 0.00 3.68
51 52 5.461032 AAAAATACATCCGTGGAAAGCAA 57.539 34.783 0.00 0.00 0.00 3.91
112 113 7.984050 TCACCAAATTGACAGCTGATTTAAAAA 59.016 29.630 23.35 3.98 0.00 1.94
113 114 7.495901 TCACCAAATTGACAGCTGATTTAAAA 58.504 30.769 23.35 5.41 0.00 1.52
114 115 7.048629 TCACCAAATTGACAGCTGATTTAAA 57.951 32.000 23.35 7.21 0.00 1.52
115 116 6.647334 TCACCAAATTGACAGCTGATTTAA 57.353 33.333 23.35 9.74 0.00 1.52
116 117 6.839124 ATCACCAAATTGACAGCTGATTTA 57.161 33.333 23.35 2.72 0.00 1.40
117 118 5.733620 ATCACCAAATTGACAGCTGATTT 57.266 34.783 23.35 13.22 0.00 2.17
118 119 5.733620 AATCACCAAATTGACAGCTGATT 57.266 34.783 23.35 7.04 0.00 2.57
119 120 6.040166 GGATAATCACCAAATTGACAGCTGAT 59.960 38.462 23.35 4.35 0.00 2.90
120 121 5.357878 GGATAATCACCAAATTGACAGCTGA 59.642 40.000 23.35 0.00 0.00 4.26
121 122 5.359009 AGGATAATCACCAAATTGACAGCTG 59.641 40.000 13.48 13.48 0.00 4.24
122 123 5.513233 AGGATAATCACCAAATTGACAGCT 58.487 37.500 0.00 0.00 0.00 4.24
123 124 5.841957 AGGATAATCACCAAATTGACAGC 57.158 39.130 0.00 0.00 0.00 4.40
124 125 7.636150 AGAAGGATAATCACCAAATTGACAG 57.364 36.000 0.00 0.00 0.00 3.51
125 126 8.106462 TGTAGAAGGATAATCACCAAATTGACA 58.894 33.333 0.00 0.00 0.00 3.58
126 127 8.506168 TGTAGAAGGATAATCACCAAATTGAC 57.494 34.615 0.00 0.00 0.00 3.18
127 128 9.527157 TTTGTAGAAGGATAATCACCAAATTGA 57.473 29.630 0.00 0.00 0.00 2.57
130 131 9.699410 TCATTTGTAGAAGGATAATCACCAAAT 57.301 29.630 0.00 0.00 33.46 2.32
131 132 9.699410 ATCATTTGTAGAAGGATAATCACCAAA 57.301 29.630 0.00 0.00 0.00 3.28
132 133 9.699410 AATCATTTGTAGAAGGATAATCACCAA 57.301 29.630 0.00 0.00 0.00 3.67
133 134 9.342308 GAATCATTTGTAGAAGGATAATCACCA 57.658 33.333 0.00 0.00 0.00 4.17
134 135 8.787852 GGAATCATTTGTAGAAGGATAATCACC 58.212 37.037 0.00 0.00 0.00 4.02
135 136 9.566432 AGGAATCATTTGTAGAAGGATAATCAC 57.434 33.333 0.00 0.00 0.00 3.06
136 137 9.784531 GAGGAATCATTTGTAGAAGGATAATCA 57.215 33.333 0.00 0.00 0.00 2.57
140 141 9.838339 GAAAGAGGAATCATTTGTAGAAGGATA 57.162 33.333 0.00 0.00 0.00 2.59
141 142 8.555729 AGAAAGAGGAATCATTTGTAGAAGGAT 58.444 33.333 0.00 0.00 0.00 3.24
142 143 7.922382 AGAAAGAGGAATCATTTGTAGAAGGA 58.078 34.615 0.00 0.00 0.00 3.36
143 144 8.572855 AAGAAAGAGGAATCATTTGTAGAAGG 57.427 34.615 0.00 0.00 0.00 3.46
144 145 9.837525 CAAAGAAAGAGGAATCATTTGTAGAAG 57.162 33.333 0.00 0.00 0.00 2.85
145 146 9.573166 TCAAAGAAAGAGGAATCATTTGTAGAA 57.427 29.630 0.00 0.00 0.00 2.10
146 147 9.224267 CTCAAAGAAAGAGGAATCATTTGTAGA 57.776 33.333 0.00 0.00 0.00 2.59
160 161 5.157940 TCAGATGTCCCTCAAAGAAAGAG 57.842 43.478 0.00 0.00 0.00 2.85
161 162 5.567037 TTCAGATGTCCCTCAAAGAAAGA 57.433 39.130 0.00 0.00 0.00 2.52
162 163 6.639632 TTTTCAGATGTCCCTCAAAGAAAG 57.360 37.500 0.00 0.00 31.34 2.62
163 164 6.777091 TGATTTTCAGATGTCCCTCAAAGAAA 59.223 34.615 0.00 0.00 0.00 2.52
164 165 6.306199 TGATTTTCAGATGTCCCTCAAAGAA 58.694 36.000 0.00 0.00 0.00 2.52
165 166 5.879763 TGATTTTCAGATGTCCCTCAAAGA 58.120 37.500 0.00 0.00 0.00 2.52
166 167 6.183360 GGATGATTTTCAGATGTCCCTCAAAG 60.183 42.308 0.00 0.00 0.00 2.77
167 168 5.653769 GGATGATTTTCAGATGTCCCTCAAA 59.346 40.000 0.00 0.00 0.00 2.69
168 169 5.044624 AGGATGATTTTCAGATGTCCCTCAA 60.045 40.000 0.00 0.00 0.00 3.02
169 170 4.476113 AGGATGATTTTCAGATGTCCCTCA 59.524 41.667 0.00 0.00 0.00 3.86
170 171 5.046288 AGGATGATTTTCAGATGTCCCTC 57.954 43.478 0.00 0.00 0.00 4.30
171 172 4.444022 CGAGGATGATTTTCAGATGTCCCT 60.444 45.833 0.00 0.00 0.00 4.20
172 173 3.812053 CGAGGATGATTTTCAGATGTCCC 59.188 47.826 0.00 0.00 0.00 4.46
173 174 4.697514 TCGAGGATGATTTTCAGATGTCC 58.302 43.478 0.00 0.00 0.00 4.02
174 175 5.987953 TCATCGAGGATGATTTTCAGATGTC 59.012 40.000 0.00 0.00 43.11 3.06
175 176 5.922053 TCATCGAGGATGATTTTCAGATGT 58.078 37.500 0.00 0.00 43.11 3.06
176 177 6.856135 TTCATCGAGGATGATTTTCAGATG 57.144 37.500 0.00 0.00 46.52 2.90
177 178 9.163899 CATATTCATCGAGGATGATTTTCAGAT 57.836 33.333 0.00 1.64 46.52 2.90
178 179 8.152898 ACATATTCATCGAGGATGATTTTCAGA 58.847 33.333 0.00 0.00 46.52 3.27
179 180 8.320396 ACATATTCATCGAGGATGATTTTCAG 57.680 34.615 0.00 1.89 46.52 3.02
180 181 7.388776 GGACATATTCATCGAGGATGATTTTCA 59.611 37.037 0.00 0.00 46.52 2.69
181 182 7.388776 TGGACATATTCATCGAGGATGATTTTC 59.611 37.037 0.00 0.00 46.52 2.29
182 183 7.226441 TGGACATATTCATCGAGGATGATTTT 58.774 34.615 0.00 0.00 46.52 1.82
183 184 6.772605 TGGACATATTCATCGAGGATGATTT 58.227 36.000 0.00 3.69 46.52 2.17
184 185 6.364568 TGGACATATTCATCGAGGATGATT 57.635 37.500 0.00 8.29 46.52 2.57
185 186 6.556974 ATGGACATATTCATCGAGGATGAT 57.443 37.500 0.00 0.00 46.52 2.45
186 187 6.168389 CAATGGACATATTCATCGAGGATGA 58.832 40.000 0.00 4.27 45.78 2.92
187 188 5.163784 GCAATGGACATATTCATCGAGGATG 60.164 44.000 0.00 0.00 41.00 3.51
188 189 4.940046 GCAATGGACATATTCATCGAGGAT 59.060 41.667 0.00 0.00 0.00 3.24
189 190 4.202346 TGCAATGGACATATTCATCGAGGA 60.202 41.667 0.00 0.00 0.00 3.71
190 191 4.067192 TGCAATGGACATATTCATCGAGG 58.933 43.478 0.00 0.00 0.00 4.63
191 192 5.874895 ATGCAATGGACATATTCATCGAG 57.125 39.130 0.00 0.00 0.00 4.04
192 193 7.064966 GTCATATGCAATGGACATATTCATCGA 59.935 37.037 0.00 0.00 38.38 3.59
193 194 7.065443 AGTCATATGCAATGGACATATTCATCG 59.935 37.037 14.76 0.00 38.38 3.84
194 195 8.277490 AGTCATATGCAATGGACATATTCATC 57.723 34.615 14.76 0.00 38.38 2.92
195 196 9.392259 CTAGTCATATGCAATGGACATATTCAT 57.608 33.333 14.76 0.00 38.38 2.57
196 197 8.377799 ACTAGTCATATGCAATGGACATATTCA 58.622 33.333 14.76 0.00 38.38 2.57
197 198 8.783833 ACTAGTCATATGCAATGGACATATTC 57.216 34.615 14.76 0.00 38.38 1.75
200 201 9.657419 CATTACTAGTCATATGCAATGGACATA 57.343 33.333 14.76 0.00 35.30 2.29
201 202 8.377799 TCATTACTAGTCATATGCAATGGACAT 58.622 33.333 14.76 5.29 35.30 3.06
202 203 7.734942 TCATTACTAGTCATATGCAATGGACA 58.265 34.615 14.76 3.65 35.30 4.02
203 204 8.607441 TTCATTACTAGTCATATGCAATGGAC 57.393 34.615 0.00 0.00 33.71 4.02
204 205 9.625747 TTTTCATTACTAGTCATATGCAATGGA 57.374 29.630 0.00 0.00 0.00 3.41
240 241 5.420421 AGCAGCTGAATCTACTTGACTAGAA 59.580 40.000 20.43 0.00 0.00 2.10
269 270 3.195698 GTCGGCCGTTGGATCTGC 61.196 66.667 27.15 1.64 0.00 4.26
270 271 2.885644 CGTCGGCCGTTGGATCTG 60.886 66.667 27.15 3.23 0.00 2.90
296 297 3.633116 GGGTGTGTAGGCCGGTGT 61.633 66.667 1.90 0.00 0.00 4.16
422 447 4.498520 ATGCGGCACTCGTCCTCG 62.499 66.667 4.03 0.00 41.72 4.63
663 758 7.743838 CGAGATTGAAAAAGAGAGACAATGAAC 59.256 37.037 0.00 0.00 32.50 3.18
670 765 7.531716 TCTAGACGAGATTGAAAAAGAGAGAC 58.468 38.462 0.00 0.00 0.00 3.36
741 847 5.538118 AGATTGGCAATGCATCATTACATG 58.462 37.500 19.07 0.00 32.35 3.21
750 856 2.364324 GTCATGGAGATTGGCAATGCAT 59.636 45.455 19.07 9.78 0.00 3.96
812 921 5.049198 ACAACAGCAACAATATGACAGACAG 60.049 40.000 0.00 0.00 0.00 3.51
813 922 4.821260 ACAACAGCAACAATATGACAGACA 59.179 37.500 0.00 0.00 0.00 3.41
814 923 5.149273 CACAACAGCAACAATATGACAGAC 58.851 41.667 0.00 0.00 0.00 3.51
815 924 4.216042 CCACAACAGCAACAATATGACAGA 59.784 41.667 0.00 0.00 0.00 3.41
875 1148 0.321475 TCAGCGTTGGCATCACATCA 60.321 50.000 0.00 0.00 43.41 3.07
974 1249 3.842925 GAAACGGGCAGCCTCACCA 62.843 63.158 12.43 0.00 0.00 4.17
975 1250 3.056328 GAAACGGGCAGCCTCACC 61.056 66.667 12.43 0.00 0.00 4.02
1140 1415 3.086391 GCGCAGGGAGAGCAGATGA 62.086 63.158 0.30 0.00 43.16 2.92
1351 1632 4.949856 AGAAAGCAATAACCATACCACCAG 59.050 41.667 0.00 0.00 0.00 4.00
1537 1844 8.918202 ACTGTAAATAGACAATCAGGACAAAA 57.082 30.769 0.00 0.00 0.00 2.44
1552 1859 2.347452 CGCCGTGACCAACTGTAAATAG 59.653 50.000 0.00 0.00 0.00 1.73
1697 2025 4.724279 AGGTAGGAAAAGAAGCAAGGAA 57.276 40.909 0.00 0.00 0.00 3.36
1700 2028 3.569701 TGCAAGGTAGGAAAAGAAGCAAG 59.430 43.478 0.00 0.00 0.00 4.01
1727 2055 0.319900 CTGACCAACGGACAGAGGTG 60.320 60.000 6.65 0.00 45.53 4.00
1728 2056 1.472662 CCTGACCAACGGACAGAGGT 61.473 60.000 13.05 0.00 45.53 3.85
1752 2080 7.173907 TCAGTATTAGTCCGCCAACTAGTATAC 59.826 40.741 0.00 0.00 33.46 1.47
1755 2083 5.439721 TCAGTATTAGTCCGCCAACTAGTA 58.560 41.667 0.00 0.00 33.46 1.82
1762 2090 5.864418 AGTTATTCAGTATTAGTCCGCCA 57.136 39.130 0.00 0.00 0.00 5.69
1785 2113 9.531158 GACCAACTAGTATACCTATCCAGTATT 57.469 37.037 0.00 0.00 32.71 1.89
1786 2114 8.676020 TGACCAACTAGTATACCTATCCAGTAT 58.324 37.037 0.00 0.00 34.79 2.12
1787 2115 8.049165 TGACCAACTAGTATACCTATCCAGTA 57.951 38.462 0.00 0.00 0.00 2.74
1788 2116 6.919158 TGACCAACTAGTATACCTATCCAGT 58.081 40.000 0.00 0.00 0.00 4.00
1789 2117 7.232188 TCTGACCAACTAGTATACCTATCCAG 58.768 42.308 0.00 0.00 0.00 3.86
1790 2118 7.157947 TCTGACCAACTAGTATACCTATCCA 57.842 40.000 0.00 0.00 0.00 3.41
1791 2119 8.653036 ATTCTGACCAACTAGTATACCTATCC 57.347 38.462 0.00 0.00 0.00 2.59
1801 2129 8.424918 CCAACATCTATATTCTGACCAACTAGT 58.575 37.037 0.00 0.00 0.00 2.57
1802 2130 8.642432 TCCAACATCTATATTCTGACCAACTAG 58.358 37.037 0.00 0.00 0.00 2.57
1803 2131 8.547481 TCCAACATCTATATTCTGACCAACTA 57.453 34.615 0.00 0.00 0.00 2.24
1804 2132 7.437713 TCCAACATCTATATTCTGACCAACT 57.562 36.000 0.00 0.00 0.00 3.16
1805 2133 8.682936 AATCCAACATCTATATTCTGACCAAC 57.317 34.615 0.00 0.00 0.00 3.77
1806 2134 9.342308 GAAATCCAACATCTATATTCTGACCAA 57.658 33.333 0.00 0.00 0.00 3.67
1807 2135 8.717717 AGAAATCCAACATCTATATTCTGACCA 58.282 33.333 0.00 0.00 0.00 4.02
1808 2136 9.566432 AAGAAATCCAACATCTATATTCTGACC 57.434 33.333 0.00 0.00 0.00 4.02
1836 2166 4.398044 AGGGTGCACTTGAAATAATAACCG 59.602 41.667 17.98 0.00 0.00 4.44
1870 2201 7.996098 ACTAAAGCACCAAAAGAATAAGCTA 57.004 32.000 0.00 0.00 0.00 3.32
1876 2207 5.535753 AGCAACTAAAGCACCAAAAGAAT 57.464 34.783 0.00 0.00 0.00 2.40
1900 2231 7.548075 GCTATAGCGGGCTATTTAAAATAGTGA 59.452 37.037 17.49 0.00 39.65 3.41
1901 2232 7.685594 GCTATAGCGGGCTATTTAAAATAGTG 58.314 38.462 17.49 0.00 39.65 2.74
1902 2233 7.845066 GCTATAGCGGGCTATTTAAAATAGT 57.155 36.000 17.49 0.00 39.65 2.12
1925 2256 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
1926 2257 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
1940 2271 6.248631 CAAGACCTTTTGTAAACGCTATAGC 58.751 40.000 15.09 15.09 37.78 2.97
1941 2272 6.248631 GCAAGACCTTTTGTAAACGCTATAG 58.751 40.000 0.00 0.00 0.00 1.31
1942 2273 5.163933 CGCAAGACCTTTTGTAAACGCTATA 60.164 40.000 0.00 0.00 43.02 1.31
1943 2274 4.378046 CGCAAGACCTTTTGTAAACGCTAT 60.378 41.667 0.00 0.00 43.02 2.97
1944 2275 3.059461 CGCAAGACCTTTTGTAAACGCTA 60.059 43.478 0.00 0.00 43.02 4.26
1945 2276 2.286772 CGCAAGACCTTTTGTAAACGCT 60.287 45.455 0.00 0.00 43.02 5.07
1946 2277 2.041244 CGCAAGACCTTTTGTAAACGC 58.959 47.619 0.00 0.00 43.02 4.84
1947 2278 2.041244 GCGCAAGACCTTTTGTAAACG 58.959 47.619 0.30 0.00 43.02 3.60
1948 2279 3.349488 AGCGCAAGACCTTTTGTAAAC 57.651 42.857 11.47 0.00 43.02 2.01
1949 2280 4.817464 TCTTAGCGCAAGACCTTTTGTAAA 59.183 37.500 11.47 0.00 38.39 2.01
1950 2281 4.382291 TCTTAGCGCAAGACCTTTTGTAA 58.618 39.130 11.47 0.00 38.39 2.41
1951 2282 3.994392 CTCTTAGCGCAAGACCTTTTGTA 59.006 43.478 11.47 0.00 38.39 2.41
1952 2283 2.808543 CTCTTAGCGCAAGACCTTTTGT 59.191 45.455 11.47 0.00 38.39 2.83
1953 2284 3.067106 TCTCTTAGCGCAAGACCTTTTG 58.933 45.455 11.47 4.34 38.39 2.44
1954 2285 3.067833 GTCTCTTAGCGCAAGACCTTTT 58.932 45.455 11.47 0.00 38.39 2.27
1955 2286 2.300437 AGTCTCTTAGCGCAAGACCTTT 59.700 45.455 21.13 7.34 40.21 3.11
1956 2287 1.896465 AGTCTCTTAGCGCAAGACCTT 59.104 47.619 21.13 7.87 40.21 3.50
1957 2288 1.551452 AGTCTCTTAGCGCAAGACCT 58.449 50.000 21.13 14.93 40.21 3.85
1958 2289 2.371910 AAGTCTCTTAGCGCAAGACC 57.628 50.000 21.13 13.52 40.21 3.85
1959 2290 2.413453 CCAAAGTCTCTTAGCGCAAGAC 59.587 50.000 11.47 16.26 38.39 3.01
1960 2291 2.037251 ACCAAAGTCTCTTAGCGCAAGA 59.963 45.455 11.47 15.40 41.10 3.02
1961 2292 2.413453 GACCAAAGTCTCTTAGCGCAAG 59.587 50.000 11.47 11.67 40.10 4.01
1962 2293 2.413837 GACCAAAGTCTCTTAGCGCAA 58.586 47.619 11.47 0.50 40.10 4.85
1963 2294 1.337823 GGACCAAAGTCTCTTAGCGCA 60.338 52.381 11.47 0.00 43.05 6.09
1964 2295 1.337823 TGGACCAAAGTCTCTTAGCGC 60.338 52.381 0.00 0.00 43.05 5.92
1965 2296 2.743636 TGGACCAAAGTCTCTTAGCG 57.256 50.000 0.00 0.00 43.05 4.26
1966 2297 4.134563 TGTTTGGACCAAAGTCTCTTAGC 58.865 43.478 20.14 5.76 43.05 3.09
1967 2298 6.693315 TTTGTTTGGACCAAAGTCTCTTAG 57.307 37.500 20.14 0.00 43.05 2.18
1968 2299 6.831353 TCATTTGTTTGGACCAAAGTCTCTTA 59.169 34.615 20.14 1.24 43.05 2.10
1969 2300 5.656416 TCATTTGTTTGGACCAAAGTCTCTT 59.344 36.000 20.14 1.05 43.05 2.85
1970 2301 5.200483 TCATTTGTTTGGACCAAAGTCTCT 58.800 37.500 20.14 1.91 43.05 3.10
1971 2302 5.514274 TCATTTGTTTGGACCAAAGTCTC 57.486 39.130 20.14 8.94 43.05 3.36
1972 2303 5.186797 TGTTCATTTGTTTGGACCAAAGTCT 59.813 36.000 20.14 2.95 43.05 3.24
1973 2304 5.415221 TGTTCATTTGTTTGGACCAAAGTC 58.585 37.500 20.14 10.01 42.73 3.01
1974 2305 5.413309 TGTTCATTTGTTTGGACCAAAGT 57.587 34.783 20.14 4.29 35.45 2.66
1975 2306 6.734104 TTTGTTCATTTGTTTGGACCAAAG 57.266 33.333 20.14 8.25 35.45 2.77
1976 2307 7.013274 TGTTTTTGTTCATTTGTTTGGACCAAA 59.987 29.630 15.89 15.89 36.34 3.28
1977 2308 6.486657 TGTTTTTGTTCATTTGTTTGGACCAA 59.513 30.769 1.69 1.69 0.00 3.67
1978 2309 5.997746 TGTTTTTGTTCATTTGTTTGGACCA 59.002 32.000 0.00 0.00 0.00 4.02
1979 2310 6.487689 TGTTTTTGTTCATTTGTTTGGACC 57.512 33.333 0.00 0.00 0.00 4.46
1980 2311 8.962857 AAATGTTTTTGTTCATTTGTTTGGAC 57.037 26.923 0.00 0.00 40.98 4.02
1989 2320 9.592720 GCGCTATTTAAAATGTTTTTGTTCATT 57.407 25.926 0.00 0.00 36.07 2.57
1990 2321 7.949428 CGCGCTATTTAAAATGTTTTTGTTCAT 59.051 29.630 5.56 0.00 0.00 2.57
1991 2322 7.277205 CGCGCTATTTAAAATGTTTTTGTTCA 58.723 30.769 5.56 0.00 0.00 3.18
1992 2323 6.243444 GCGCGCTATTTAAAATGTTTTTGTTC 59.757 34.615 26.67 0.00 0.00 3.18
1993 2324 6.068300 GCGCGCTATTTAAAATGTTTTTGTT 58.932 32.000 26.67 0.00 0.00 2.83
1994 2325 5.404066 AGCGCGCTATTTAAAATGTTTTTGT 59.596 32.000 35.79 0.00 0.00 2.83
1995 2326 5.842377 AGCGCGCTATTTAAAATGTTTTTG 58.158 33.333 35.79 0.00 0.00 2.44
1996 2327 7.749539 ATAGCGCGCTATTTAAAATGTTTTT 57.250 28.000 40.32 19.71 35.92 1.94
1997 2328 7.112984 GCTATAGCGCGCTATTTAAAATGTTTT 59.887 33.333 46.76 27.57 39.65 2.43
1998 2329 6.577427 GCTATAGCGCGCTATTTAAAATGTTT 59.423 34.615 46.76 27.75 39.65 2.83
1999 2330 6.077838 GCTATAGCGCGCTATTTAAAATGTT 58.922 36.000 46.76 28.22 39.65 2.71
2000 2331 5.618561 GCTATAGCGCGCTATTTAAAATGT 58.381 37.500 46.76 28.88 39.65 2.71
2022 2353 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
2023 2354 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
2029 2360 7.151976 TCTTTCAAATGCTATAGCGTGCTATA 58.848 34.615 20.02 17.96 45.83 1.31
2030 2361 5.991606 TCTTTCAAATGCTATAGCGTGCTAT 59.008 36.000 20.02 17.65 45.83 2.97
2031 2362 5.356426 TCTTTCAAATGCTATAGCGTGCTA 58.644 37.500 20.02 3.73 45.83 3.49
2032 2363 4.191544 TCTTTCAAATGCTATAGCGTGCT 58.808 39.130 20.02 7.98 45.83 4.40
2033 2364 4.521943 CTCTTTCAAATGCTATAGCGTGC 58.478 43.478 20.02 0.00 45.83 5.34
2034 2365 4.572389 ACCTCTTTCAAATGCTATAGCGTG 59.428 41.667 20.02 16.47 45.83 5.34
2035 2366 4.770795 ACCTCTTTCAAATGCTATAGCGT 58.229 39.130 19.55 16.84 45.83 5.07
2036 2367 4.212214 GGACCTCTTTCAAATGCTATAGCG 59.788 45.833 19.55 5.67 45.83 4.26
2037 2368 4.212214 CGGACCTCTTTCAAATGCTATAGC 59.788 45.833 18.18 18.18 42.50 2.97
2038 2369 4.212214 GCGGACCTCTTTCAAATGCTATAG 59.788 45.833 0.00 0.00 0.00 1.31
2039 2370 4.127171 GCGGACCTCTTTCAAATGCTATA 58.873 43.478 0.00 0.00 0.00 1.31
2040 2371 2.945668 GCGGACCTCTTTCAAATGCTAT 59.054 45.455 0.00 0.00 0.00 2.97
2041 2372 2.356135 GCGGACCTCTTTCAAATGCTA 58.644 47.619 0.00 0.00 0.00 3.49
2042 2373 1.168714 GCGGACCTCTTTCAAATGCT 58.831 50.000 0.00 0.00 0.00 3.79
2043 2374 0.171231 GGCGGACCTCTTTCAAATGC 59.829 55.000 0.00 0.00 0.00 3.56
2044 2375 0.447801 CGGCGGACCTCTTTCAAATG 59.552 55.000 0.00 0.00 0.00 2.32
2045 2376 1.305930 GCGGCGGACCTCTTTCAAAT 61.306 55.000 9.78 0.00 0.00 2.32
2046 2377 1.964373 GCGGCGGACCTCTTTCAAA 60.964 57.895 9.78 0.00 0.00 2.69
2047 2378 1.537814 TAGCGGCGGACCTCTTTCAA 61.538 55.000 9.78 0.00 31.87 2.69
2048 2379 1.537814 TTAGCGGCGGACCTCTTTCA 61.538 55.000 9.78 0.00 31.87 2.69
2049 2380 0.806492 CTTAGCGGCGGACCTCTTTC 60.806 60.000 9.78 0.00 31.87 2.62
2050 2381 1.218316 CTTAGCGGCGGACCTCTTT 59.782 57.895 9.78 0.00 31.87 2.52
2051 2382 1.043673 ATCTTAGCGGCGGACCTCTT 61.044 55.000 9.78 0.00 31.87 2.85
2052 2383 1.455959 ATCTTAGCGGCGGACCTCT 60.456 57.895 9.78 0.00 34.60 3.69
2053 2384 1.300233 CATCTTAGCGGCGGACCTC 60.300 63.158 9.78 0.00 0.00 3.85
2054 2385 2.815308 CATCTTAGCGGCGGACCT 59.185 61.111 9.78 0.00 0.00 3.85
2055 2386 2.925162 AAGCATCTTAGCGGCGGACC 62.925 60.000 9.78 0.00 40.15 4.46
2056 2387 0.249322 TAAGCATCTTAGCGGCGGAC 60.249 55.000 9.78 0.00 40.15 4.79
2057 2388 0.032130 CTAAGCATCTTAGCGGCGGA 59.968 55.000 9.78 0.00 40.15 5.54
2058 2389 1.560860 GCTAAGCATCTTAGCGGCGG 61.561 60.000 18.95 0.00 38.12 6.13
2059 2390 1.856012 GCTAAGCATCTTAGCGGCG 59.144 57.895 18.95 0.51 38.12 6.46
2071 2402 3.936661 AGTTTTAAATAGCGCGCTAAGC 58.063 40.909 40.90 27.92 43.95 3.09
2072 2403 5.227184 CCAAAGTTTTAAATAGCGCGCTAAG 59.773 40.000 40.90 15.74 31.73 2.18
2073 2404 5.090083 CCAAAGTTTTAAATAGCGCGCTAA 58.910 37.500 40.90 26.03 31.73 3.09
2074 2405 4.154556 ACCAAAGTTTTAAATAGCGCGCTA 59.845 37.500 39.72 39.72 0.00 4.26
2075 2406 3.057806 ACCAAAGTTTTAAATAGCGCGCT 60.058 39.130 38.01 38.01 0.00 5.92
2076 2407 3.239254 ACCAAAGTTTTAAATAGCGCGC 58.761 40.909 26.66 26.66 0.00 6.86
2077 2408 4.432373 GCAACCAAAGTTTTAAATAGCGCG 60.432 41.667 0.00 0.00 32.45 6.86
2078 2409 4.684242 AGCAACCAAAGTTTTAAATAGCGC 59.316 37.500 0.00 0.00 32.45 5.92
2079 2410 7.462724 GCATAGCAACCAAAGTTTTAAATAGCG 60.463 37.037 0.00 0.00 32.45 4.26
2080 2411 7.545615 AGCATAGCAACCAAAGTTTTAAATAGC 59.454 33.333 0.00 0.00 32.45 2.97
2081 2412 8.986477 AGCATAGCAACCAAAGTTTTAAATAG 57.014 30.769 0.00 0.00 32.45 1.73
2083 2414 9.942850 ATTAGCATAGCAACCAAAGTTTTAAAT 57.057 25.926 0.00 0.00 32.45 1.40
2084 2415 9.771534 AATTAGCATAGCAACCAAAGTTTTAAA 57.228 25.926 0.00 0.00 32.45 1.52
2085 2416 9.771534 AAATTAGCATAGCAACCAAAGTTTTAA 57.228 25.926 0.00 0.00 32.45 1.52
2087 2418 9.423061 CTAAATTAGCATAGCAACCAAAGTTTT 57.577 29.630 0.00 0.00 32.45 2.43
2088 2419 8.585018 ACTAAATTAGCATAGCAACCAAAGTTT 58.415 29.630 0.00 0.00 32.45 2.66
2089 2420 8.122472 ACTAAATTAGCATAGCAACCAAAGTT 57.878 30.769 0.00 0.00 36.33 2.66
2090 2421 7.703058 ACTAAATTAGCATAGCAACCAAAGT 57.297 32.000 0.00 0.00 0.00 2.66
2091 2422 8.893727 AGTACTAAATTAGCATAGCAACCAAAG 58.106 33.333 0.00 0.00 0.00 2.77
2092 2423 8.801882 AGTACTAAATTAGCATAGCAACCAAA 57.198 30.769 0.00 0.00 0.00 3.28
2093 2424 8.673711 CAAGTACTAAATTAGCATAGCAACCAA 58.326 33.333 0.00 0.00 0.00 3.67
2094 2425 7.827236 ACAAGTACTAAATTAGCATAGCAACCA 59.173 33.333 0.00 0.00 0.00 3.67
2095 2426 8.209917 ACAAGTACTAAATTAGCATAGCAACC 57.790 34.615 0.00 0.00 0.00 3.77
2097 2428 9.542462 CCTACAAGTACTAAATTAGCATAGCAA 57.458 33.333 0.00 0.00 0.00 3.91
2098 2429 8.920174 TCCTACAAGTACTAAATTAGCATAGCA 58.080 33.333 0.00 0.00 0.00 3.49
2099 2430 9.760077 TTCCTACAAGTACTAAATTAGCATAGC 57.240 33.333 0.00 0.00 0.00 2.97
2179 2510 9.895138 GGGTGTCAGATTAACTTAAGGTAATAA 57.105 33.333 22.76 10.89 0.00 1.40
2180 2511 9.275572 AGGGTGTCAGATTAACTTAAGGTAATA 57.724 33.333 22.76 7.76 0.00 0.98
2181 2512 8.159229 AGGGTGTCAGATTAACTTAAGGTAAT 57.841 34.615 22.89 22.89 0.00 1.89
2182 2513 7.563724 AGGGTGTCAGATTAACTTAAGGTAA 57.436 36.000 15.16 15.16 0.00 2.85
2183 2514 8.669055 TTAGGGTGTCAGATTAACTTAAGGTA 57.331 34.615 7.53 0.80 0.00 3.08
2184 2515 7.563724 TTAGGGTGTCAGATTAACTTAAGGT 57.436 36.000 7.53 2.03 0.00 3.50
2185 2516 8.727910 GTTTTAGGGTGTCAGATTAACTTAAGG 58.272 37.037 7.53 0.00 0.00 2.69
2186 2517 9.503399 AGTTTTAGGGTGTCAGATTAACTTAAG 57.497 33.333 0.00 0.00 0.00 1.85
2187 2518 9.280174 CAGTTTTAGGGTGTCAGATTAACTTAA 57.720 33.333 0.00 0.00 0.00 1.85
2188 2519 8.434392 ACAGTTTTAGGGTGTCAGATTAACTTA 58.566 33.333 0.00 0.00 0.00 2.24
2189 2520 7.287810 ACAGTTTTAGGGTGTCAGATTAACTT 58.712 34.615 0.00 0.00 0.00 2.66
2190 2521 6.838382 ACAGTTTTAGGGTGTCAGATTAACT 58.162 36.000 0.00 0.00 0.00 2.24
2191 2522 6.708949 TGACAGTTTTAGGGTGTCAGATTAAC 59.291 38.462 0.32 0.00 44.35 2.01
2192 2523 6.833041 TGACAGTTTTAGGGTGTCAGATTAA 58.167 36.000 0.32 0.00 44.35 1.40
2193 2524 6.428083 TGACAGTTTTAGGGTGTCAGATTA 57.572 37.500 0.32 0.00 44.35 1.75
2194 2525 5.304686 TGACAGTTTTAGGGTGTCAGATT 57.695 39.130 0.32 0.00 44.35 2.40
2195 2526 4.974645 TGACAGTTTTAGGGTGTCAGAT 57.025 40.909 0.32 0.00 44.35 2.90
2208 2539 9.339850 ACGAGTGAGTATATACTATGACAGTTT 57.660 33.333 15.42 2.11 38.80 2.66
2209 2540 8.905660 ACGAGTGAGTATATACTATGACAGTT 57.094 34.615 15.42 1.64 38.80 3.16
2210 2541 8.905660 AACGAGTGAGTATATACTATGACAGT 57.094 34.615 15.42 11.48 41.62 3.55
2211 2542 8.444715 GGAACGAGTGAGTATATACTATGACAG 58.555 40.741 15.42 11.96 36.50 3.51
2212 2543 7.935210 TGGAACGAGTGAGTATATACTATGACA 59.065 37.037 15.42 6.64 36.50 3.58
2213 2544 8.320396 TGGAACGAGTGAGTATATACTATGAC 57.680 38.462 15.42 11.96 36.50 3.06
2214 2545 8.913487 TTGGAACGAGTGAGTATATACTATGA 57.087 34.615 15.42 0.42 36.50 2.15
2215 2546 9.961265 TTTTGGAACGAGTGAGTATATACTATG 57.039 33.333 15.42 6.58 36.50 2.23
2221 2552 9.314321 CACTTATTTTGGAACGAGTGAGTATAT 57.686 33.333 0.00 0.00 35.01 0.86
2222 2553 8.308931 ACACTTATTTTGGAACGAGTGAGTATA 58.691 33.333 8.15 0.00 35.87 1.47
2223 2554 7.159372 ACACTTATTTTGGAACGAGTGAGTAT 58.841 34.615 8.15 0.00 35.87 2.12
2224 2555 6.518493 ACACTTATTTTGGAACGAGTGAGTA 58.482 36.000 8.15 0.00 35.87 2.59
2225 2556 5.365619 ACACTTATTTTGGAACGAGTGAGT 58.634 37.500 8.15 0.00 35.87 3.41
2226 2557 5.924475 ACACTTATTTTGGAACGAGTGAG 57.076 39.130 8.15 0.00 35.87 3.51
2227 2558 6.316640 TCAAACACTTATTTTGGAACGAGTGA 59.683 34.615 8.15 0.00 35.87 3.41
2228 2559 6.491394 TCAAACACTTATTTTGGAACGAGTG 58.509 36.000 0.00 0.00 37.20 3.51
2229 2560 6.687081 TCAAACACTTATTTTGGAACGAGT 57.313 33.333 0.00 0.00 35.12 4.18
2230 2561 7.193595 AGTTCAAACACTTATTTTGGAACGAG 58.806 34.615 0.00 0.00 35.12 4.18
2231 2562 7.090953 AGTTCAAACACTTATTTTGGAACGA 57.909 32.000 0.00 0.00 35.12 3.85
2232 2563 8.844441 TTAGTTCAAACACTTATTTTGGAACG 57.156 30.769 0.00 0.00 35.12 3.95
2246 2577 6.243811 AGTGTCGTGTTTTTAGTTCAAACA 57.756 33.333 0.00 0.00 40.93 2.83
2247 2578 8.831000 ATAAGTGTCGTGTTTTTAGTTCAAAC 57.169 30.769 0.00 0.00 35.11 2.93
2248 2579 9.843334 AAATAAGTGTCGTGTTTTTAGTTCAAA 57.157 25.926 0.00 0.00 0.00 2.69
2249 2580 9.843334 AAAATAAGTGTCGTGTTTTTAGTTCAA 57.157 25.926 0.00 0.00 0.00 2.69
2250 2581 9.279904 CAAAATAAGTGTCGTGTTTTTAGTTCA 57.720 29.630 0.00 0.00 0.00 3.18
2251 2582 8.739461 CCAAAATAAGTGTCGTGTTTTTAGTTC 58.261 33.333 0.00 0.00 0.00 3.01
2252 2583 8.460428 TCCAAAATAAGTGTCGTGTTTTTAGTT 58.540 29.630 0.00 0.00 0.00 2.24
2253 2584 7.987649 TCCAAAATAAGTGTCGTGTTTTTAGT 58.012 30.769 0.00 0.00 0.00 2.24
2254 2585 8.844441 TTCCAAAATAAGTGTCGTGTTTTTAG 57.156 30.769 0.00 0.00 0.00 1.85
2255 2586 9.239002 CATTCCAAAATAAGTGTCGTGTTTTTA 57.761 29.630 0.00 0.00 0.00 1.52
2256 2587 7.223777 CCATTCCAAAATAAGTGTCGTGTTTTT 59.776 33.333 0.00 0.00 0.00 1.94
2257 2588 6.699642 CCATTCCAAAATAAGTGTCGTGTTTT 59.300 34.615 0.00 0.00 0.00 2.43
2258 2589 6.039941 TCCATTCCAAAATAAGTGTCGTGTTT 59.960 34.615 0.00 0.00 0.00 2.83
2259 2590 5.533154 TCCATTCCAAAATAAGTGTCGTGTT 59.467 36.000 0.00 0.00 0.00 3.32
2260 2591 5.067273 TCCATTCCAAAATAAGTGTCGTGT 58.933 37.500 0.00 0.00 0.00 4.49
2261 2592 5.391950 CCTCCATTCCAAAATAAGTGTCGTG 60.392 44.000 0.00 0.00 0.00 4.35
2262 2593 4.700213 CCTCCATTCCAAAATAAGTGTCGT 59.300 41.667 0.00 0.00 0.00 4.34
2263 2594 4.096382 CCCTCCATTCCAAAATAAGTGTCG 59.904 45.833 0.00 0.00 0.00 4.35
2264 2595 5.261216 TCCCTCCATTCCAAAATAAGTGTC 58.739 41.667 0.00 0.00 0.00 3.67
2265 2596 5.269554 TCCCTCCATTCCAAAATAAGTGT 57.730 39.130 0.00 0.00 0.00 3.55
2266 2597 6.796785 ATTCCCTCCATTCCAAAATAAGTG 57.203 37.500 0.00 0.00 0.00 3.16
2267 2598 9.506042 AAATATTCCCTCCATTCCAAAATAAGT 57.494 29.630 0.00 0.00 0.00 2.24
2273 2604 9.374711 GGTAATAAATATTCCCTCCATTCCAAA 57.625 33.333 0.00 0.00 0.00 3.28
2274 2605 8.742437 AGGTAATAAATATTCCCTCCATTCCAA 58.258 33.333 0.00 0.00 26.95 3.53
2275 2606 8.300752 AGGTAATAAATATTCCCTCCATTCCA 57.699 34.615 0.00 0.00 26.95 3.53
2294 2625 9.596308 ACAAGGGTCAAATTAACTTAAGGTAAT 57.404 29.630 18.25 18.25 0.00 1.89
2295 2626 8.999905 ACAAGGGTCAAATTAACTTAAGGTAA 57.000 30.769 15.16 15.16 0.00 2.85
2296 2627 8.999905 AACAAGGGTCAAATTAACTTAAGGTA 57.000 30.769 7.53 0.80 0.00 3.08
2297 2628 7.907841 AACAAGGGTCAAATTAACTTAAGGT 57.092 32.000 7.53 2.03 0.00 3.50
2389 2723 8.169977 AGATCATTCTAGAAACAAACAAGCAA 57.830 30.769 9.71 0.00 0.00 3.91
2851 3253 5.519206 GCAAAAGATGAAGCAATCAGGAATC 59.481 40.000 0.00 0.00 42.53 2.52
2902 3304 5.163754 CGGCGTAGATTCAAAAAGGAGAATT 60.164 40.000 0.00 0.00 34.79 2.17
3378 3835 7.040473 ACTACTTTACCAATGAGATACCTCG 57.960 40.000 0.00 0.00 42.33 4.63
3533 3990 3.156293 TGAATGAATGGAAGTGTGGGTG 58.844 45.455 0.00 0.00 0.00 4.61
3534 3991 3.424703 CTGAATGAATGGAAGTGTGGGT 58.575 45.455 0.00 0.00 0.00 4.51
3584 4046 8.814038 AATGTAGATTCAGTCAGGCTAAAAAT 57.186 30.769 0.00 0.00 0.00 1.82
3649 4120 3.371168 CCAAACAAACAGTGAACATCGG 58.629 45.455 0.00 0.00 0.00 4.18
3652 4123 3.103742 ACCCCAAACAAACAGTGAACAT 58.896 40.909 0.00 0.00 0.00 2.71
3683 4155 5.556915 CCAAAACTACTGTCTATCCACCAA 58.443 41.667 0.00 0.00 0.00 3.67
3731 4204 0.259938 GATGGACTGCCCCCTTCAAT 59.740 55.000 0.00 0.00 0.00 2.57
3752 4225 6.371278 AGCAGATGATAATTCCCTGTGAAAT 58.629 36.000 0.00 0.00 36.33 2.17
3774 4272 2.419324 CACTGAGCAGAGATCCAAAAGC 59.581 50.000 4.21 0.00 0.00 3.51
3777 4275 2.634453 TGACACTGAGCAGAGATCCAAA 59.366 45.455 4.21 0.00 0.00 3.28
3819 4323 7.171337 GCACTACCACAAACATCAAATTTTCAT 59.829 33.333 0.00 0.00 0.00 2.57
3823 4327 5.911752 TGCACTACCACAAACATCAAATTT 58.088 33.333 0.00 0.00 0.00 1.82
3825 4329 5.243507 TGATGCACTACCACAAACATCAAAT 59.756 36.000 0.00 0.00 40.50 2.32
3833 4337 5.590530 AAAAACTGATGCACTACCACAAA 57.409 34.783 0.00 0.00 0.00 2.83
3983 4494 8.548025 CCCTTATATGATGGGATGTACACAATA 58.452 37.037 0.00 0.00 44.07 1.90
3998 4509 4.829492 GTGCAGAAAAGCCCCTTATATGAT 59.171 41.667 0.00 0.00 0.00 2.45
3999 4510 4.079787 AGTGCAGAAAAGCCCCTTATATGA 60.080 41.667 0.00 0.00 0.00 2.15
4000 4511 4.210331 AGTGCAGAAAAGCCCCTTATATG 58.790 43.478 0.00 0.00 0.00 1.78
4001 4512 4.526438 AGTGCAGAAAAGCCCCTTATAT 57.474 40.909 0.00 0.00 0.00 0.86
4066 4578 3.691118 TGTTGGATGAATAGCAACTGAGC 59.309 43.478 0.00 0.00 0.00 4.26
4067 4579 5.220989 CCATGTTGGATGAATAGCAACTGAG 60.221 44.000 0.00 0.00 40.96 3.35
4069 4581 4.400251 ACCATGTTGGATGAATAGCAACTG 59.600 41.667 0.00 0.00 40.96 3.16
4144 4656 3.849951 GGCCGGAGCGAATCAGGA 61.850 66.667 5.05 0.00 45.45 3.86
4147 4659 4.838152 GCAGGCCGGAGCGAATCA 62.838 66.667 5.05 0.00 41.24 2.57
4184 4696 1.680651 CAGAGCTCGGGTCAGGAGT 60.681 63.158 8.37 0.00 34.00 3.85
4228 4740 2.361610 ATGACAAGCAAGCCCCGG 60.362 61.111 0.00 0.00 0.00 5.73
4229 4741 1.973281 ACATGACAAGCAAGCCCCG 60.973 57.895 0.00 0.00 0.00 5.73
4230 4742 1.588082 CACATGACAAGCAAGCCCC 59.412 57.895 0.00 0.00 0.00 5.80
4231 4743 1.080298 GCACATGACAAGCAAGCCC 60.080 57.895 0.00 0.00 0.00 5.19
4232 4744 1.080298 GGCACATGACAAGCAAGCC 60.080 57.895 0.00 0.00 36.37 4.35
4233 4745 1.080298 GGGCACATGACAAGCAAGC 60.080 57.895 0.00 0.00 0.00 4.01
4234 4746 1.210931 CGGGCACATGACAAGCAAG 59.789 57.895 0.00 0.00 0.00 4.01
4235 4747 2.267351 CCGGGCACATGACAAGCAA 61.267 57.895 0.00 0.00 0.00 3.91
4236 4748 2.672651 CCGGGCACATGACAAGCA 60.673 61.111 0.00 0.00 0.00 3.91
4237 4749 2.672996 ACCGGGCACATGACAAGC 60.673 61.111 6.32 0.00 0.00 4.01
4238 4750 0.606401 AAGACCGGGCACATGACAAG 60.606 55.000 11.69 0.00 0.00 3.16
4239 4751 0.605319 GAAGACCGGGCACATGACAA 60.605 55.000 11.69 0.00 0.00 3.18
4240 4752 1.003839 GAAGACCGGGCACATGACA 60.004 57.895 11.69 0.00 0.00 3.58
4241 4753 1.745489 GGAAGACCGGGCACATGAC 60.745 63.158 11.69 0.00 0.00 3.06
4242 4754 2.668632 GGAAGACCGGGCACATGA 59.331 61.111 11.69 0.00 0.00 3.07
4243 4755 2.438434 GGGAAGACCGGGCACATG 60.438 66.667 11.69 0.00 36.97 3.21
4252 4764 3.003763 AGGCTGGACGGGAAGACC 61.004 66.667 0.00 0.00 35.19 3.85
4253 4765 2.266055 CAGGCTGGACGGGAAGAC 59.734 66.667 6.61 0.00 0.00 3.01
4254 4766 3.003173 CCAGGCTGGACGGGAAGA 61.003 66.667 29.96 0.00 40.96 2.87
4255 4767 3.316573 GACCAGGCTGGACGGGAAG 62.317 68.421 38.99 11.06 40.96 3.46
4256 4768 3.319198 GACCAGGCTGGACGGGAA 61.319 66.667 38.99 0.00 40.96 3.97
4294 4806 4.735132 CGCGGCGAGGAGAACCAA 62.735 66.667 19.16 0.00 38.94 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.